RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12587
(390 letters)
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus
abyssi [TaxId: 29292]}
Length = 437
Score = 81.4 bits (199), Expect = 2e-17
Identities = 57/345 (16%), Positives = 121/345 (35%), Gaps = 24/345 (6%)
Query: 56 ALCMYLRMIVIALYVAWYSEKPDLVFCD---LVSICIPILQAKQFKVLFYCHYPDQL--- 109
A+ +++ + PD+V V I + + +F H ++
Sbjct: 100 AVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKSKLP 159
Query: 110 -LSKQGSFLKSIYRFPLNKLEEWTTCKADKIVVNSEFTKSVVQATFRSLDHKCLDILYPS 168
+ L + +P E AD + S FR+ + K +
Sbjct: 160 AFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGI 219
Query: 169 VYTE----GLEKTTPEPIENVLNPLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLS 224
+ L + E +++L+ E + F+ I R++R + + L ++ S
Sbjct: 220 DCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVL--LKAIEILSS 277
Query: 225 DEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFC 284
+ ++ ++ G DP +E K + + S L+
Sbjct: 278 KKEFQEMRFIIIGKGDPELEGWARSLEE--------KHGNVKVITEMLSREFVRELYGSV 329
Query: 285 HCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES-NEEAFAKAMK 343
+I E FG+V +EAM IA GG ++ ++ TG L ++ + A A+
Sbjct: 330 DFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRD-IITNETGILVKAGDPGELANAIL 388
Query: 344 KIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVNNMLDKK 388
K ++ + + +F + R FS++ + + +D+
Sbjct: 389 KALELSRSDLSKFRENCKKR-AMSFSWEKSAERYVKAYTGSIDRA 432
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 75.5 bits (184), Expect = 1e-15
Identities = 28/208 (13%), Positives = 68/208 (32%), Gaps = 26/208 (12%)
Query: 188 PLPGKEDIVFLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENV 247
+ +F I+R +K ++L +++ + S +LVV G D +
Sbjct: 285 RIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSL-------GGRLVVLGAGDVALEGAL 337
Query: 248 EYYKELGVLVKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCK 307
+ V ++ + C II E G+ + A+
Sbjct: 338 LAAAS--------RHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYG 389
Query: 308 RPVIAVNSGGPKESVVDGR---------TGFLCES-NEEAFAKAMKKIVDNDGNIIQQFS 357
+ +GG ++V+D TG + +A+++ V + + ++
Sbjct: 390 CIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHD-PKLWT 448
Query: 358 QFGFNRFNEKFSFQAFSIQLNTIVNNML 385
Q S++ + + + ++
Sbjct: 449 QMQKLGMKSDVSWEKSAGLYAALYSQLI 476
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 72.6 bits (177), Expect = 1e-14
Identities = 21/201 (10%), Positives = 55/201 (27%), Gaps = 18/201 (8%)
Query: 164 ILYPSVYTEGLEKTTPEPIENVLNPLPG--KEDIVFLSINRYERKKNLELAIYSLNSLRS 221
+ + + + K P+ L L K S+ R + K L + +L
Sbjct: 222 VYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLE 281
Query: 222 RLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVLVKKLK-------LSDNVLFLTSPSD 274
+ +A + +L ++ +
Sbjct: 282 KYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDR 341
Query: 275 AAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRP-----VIAVNSGGPKESVVDGRTGF 329
+ +F++ + TP + +V E + + P ++ G +
Sbjct: 342 KLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELTS---AL 398
Query: 330 LCES-NEEAFAKAMKKIVDND 349
+ + + A A+ + +
Sbjct: 399 IVNPYDRDEVAAALDRALTMS 419
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 166
Score = 47.5 bits (111), Expect = 4e-07
Identities = 50/159 (31%), Positives = 75/159 (47%), Gaps = 15/159 (9%)
Query: 197 FLSINRYERKKNLELAIYSLNSLRSRLSDEMKTHVKLVVAGGYDPHNIENVEYYKELGVL 256
+LS+NR +K +EL + L+ KL + G + + K
Sbjct: 15 WLSVNRIYPEKRIELQLEVFKKLQ---------DEKLYIVGWFSKGDHAERYARK----- 60
Query: 257 VKKLKLSDNVLFLTSPSDAAKISLFKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSG 316
DNV FL S S+ I L+ C ++ T +E FG+ PIEAM +PVIAVN G
Sbjct: 61 -IMKIAPDNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEG 119
Query: 317 GPKESVVDGRTGFLCESNEEAFAKAMKKIVDNDGNIIQQ 355
G KE+V++ +TG+L ++ AMKK+ N +
Sbjct: 120 GFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDKFKKD 158
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 48.8 bits (114), Expect = 6e-07
Identities = 14/104 (13%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 281 FKFCHCIIYTPSNEHFGIVPIEAMFCKRPVIAVNSGGPKESVVDGRTGFLCES--NEEAF 338
+++ E GIV +EA+ PV+ G + D G + ++E
Sbjct: 267 MAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQL 326
Query: 339 AKAMKKIVDNDGNIIQQFSQFGFNRFNEKFSFQAFSIQLNTIVN 382
+ ++K + + +++ + + + + I+
Sbjct: 327 NEVLRKALTQS-PLRMAWAENARHYA-DTQDLYSLPEKAADIIT 368
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 30.2 bits (68), Expect = 0.20
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 243 NIENVEYYKELGVLVKKLKLSDNVLFLTSPSDAAKI--------SLFKFCHCIIYTPSNE 294
N + +Y + +G V+ L + +++FL + ++ S F I+ T ++
Sbjct: 17 NKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPF----AIVITQQHQ 72
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 26.8 bits (57), Expect = 4.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 232 KLVVAGGYDPHNIENVEYY 250
+ AGGY ++ +E Y
Sbjct: 6 LIYTAGGYFRQSLSYLEAY 24
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus
pyogenes [TaxId: 1314]}
Length = 238
Score = 26.5 bits (57), Expect = 5.1
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 227 MKTHVKLVVAGGYDPHNIENVEYYKELGVLVKK 259
M + LVV + NI+ V + + +G V
Sbjct: 205 MDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN 237
>d2yzca1 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthrobacter
globiformis [TaxId: 1665]}
Length = 131
Score = 25.4 bits (56), Expect = 7.8
Identities = 8/40 (20%), Positives = 9/40 (22%), Gaps = 4/40 (10%)
Query: 5 TARLTITATAWGATGPRTTAHDHCFKETKDGTLPVKVIGD 44
R W R HDH F K +
Sbjct: 95 GGRWAAQQFFW----DRINDHDHAFSRNKSEVRTAVLEIS 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.417
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,478,950
Number of extensions: 70221
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 11
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)