Query psy12589
Match_columns 149
No_of_seqs 134 out of 1310
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 23:10:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 4.2E-30 9.1E-35 162.4 17.0 141 2-143 11-156 (160)
2 KOG0027|consensus 100.0 3.2E-27 7E-32 151.3 16.1 138 5-143 2-149 (151)
3 KOG0031|consensus 99.9 9.7E-25 2.1E-29 134.7 14.8 140 3-143 24-165 (171)
4 PTZ00183 centrin; Provisional 99.9 2E-23 4.4E-28 134.5 17.3 144 3-148 9-158 (158)
5 PTZ00184 calmodulin; Provision 99.9 2.3E-23 5E-28 132.9 17.1 142 1-143 1-148 (149)
6 KOG0028|consensus 99.9 2.5E-23 5.4E-28 129.4 15.0 139 4-143 26-170 (172)
7 KOG0030|consensus 99.9 1.7E-22 3.7E-27 122.9 13.1 139 3-143 3-151 (152)
8 KOG0034|consensus 99.9 4.7E-20 1E-24 120.5 15.6 140 4-146 26-177 (187)
9 KOG0037|consensus 99.8 3.9E-18 8.4E-23 111.6 13.8 125 10-142 56-187 (221)
10 KOG0044|consensus 99.8 2E-17 4.3E-22 108.3 13.6 139 3-143 21-175 (193)
11 KOG0036|consensus 99.7 6.4E-15 1.4E-19 104.5 14.7 133 4-143 7-146 (463)
12 KOG0038|consensus 99.6 5.5E-15 1.2E-19 91.1 10.8 141 5-148 22-181 (189)
13 cd05022 S-100A13 S-100A13: S-1 99.6 2.1E-14 4.6E-19 83.4 7.1 65 79-143 8-75 (89)
14 PF13499 EF-hand_7: EF-hand do 99.5 8.4E-14 1.8E-18 77.0 7.5 62 80-141 1-66 (66)
15 cd05027 S-100B S-100B: S-100B 99.5 3.9E-13 8.5E-18 78.2 8.2 65 79-143 8-79 (88)
16 PLN02964 phosphatidylserine de 99.4 5.2E-12 1.1E-16 96.2 13.0 116 4-123 136-273 (644)
17 KOG0377|consensus 99.4 3.2E-12 7E-17 91.9 11.1 131 11-142 464-614 (631)
18 KOG0044|consensus 99.4 4.7E-12 1E-16 83.2 9.9 114 28-143 10-128 (193)
19 cd05029 S-100A6 S-100A6: S-100 99.4 2.9E-12 6.3E-17 74.5 7.9 64 80-143 11-79 (88)
20 cd05031 S-100A10_like S-100A10 99.4 3.8E-12 8.3E-17 75.2 7.7 65 79-143 8-79 (94)
21 cd05026 S-100Z S-100Z: S-100Z 99.4 6.4E-12 1.4E-16 73.9 7.9 65 79-143 10-81 (93)
22 cd05025 S-100A1 S-100A1: S-100 99.4 7.8E-12 1.7E-16 73.6 8.0 66 78-143 8-80 (92)
23 PF13833 EF-hand_8: EF-hand do 99.3 1.1E-11 2.3E-16 65.7 6.4 52 92-143 1-53 (54)
24 cd00052 EH Eps15 homology doma 99.3 1.3E-11 2.9E-16 68.2 7.0 59 82-142 2-60 (67)
25 KOG0027|consensus 99.3 2.2E-11 4.7E-16 78.1 8.4 67 78-144 7-73 (151)
26 smart00027 EH Eps15 homology d 99.3 3E-11 6.6E-16 71.6 8.1 63 78-142 9-71 (96)
27 cd00213 S-100 S-100: S-100 dom 99.3 3E-11 6.6E-16 70.4 7.3 66 78-143 7-79 (88)
28 KOG4223|consensus 99.3 1.8E-11 3.9E-16 84.9 7.1 131 8-139 160-301 (325)
29 cd00051 EFh EF-hand, calcium b 99.2 7.8E-11 1.7E-15 63.6 7.3 61 81-141 2-62 (63)
30 cd05023 S-100A11 S-100A11: S-1 99.2 1E-10 2.2E-15 68.2 8.0 65 79-143 9-80 (89)
31 KOG0037|consensus 99.2 3.7E-10 8E-15 74.5 8.9 87 10-104 123-217 (221)
32 PTZ00183 centrin; Provisional 99.2 2.1E-09 4.5E-14 69.1 12.2 89 54-143 29-118 (158)
33 COG5126 FRQ1 Ca2+-binding prot 99.2 2E-09 4.3E-14 68.7 11.8 100 42-143 13-120 (160)
34 KOG4223|consensus 99.1 5.4E-10 1.2E-14 77.6 8.7 134 11-145 77-230 (325)
35 PF14658 EF-hand_9: EF-hand do 99.1 4.5E-10 9.7E-15 60.8 6.5 61 83-143 2-64 (66)
36 PTZ00184 calmodulin; Provision 99.1 5.2E-09 1.1E-13 66.5 12.0 89 54-143 23-112 (149)
37 cd00252 SPARC_EC SPARC_EC; ext 99.1 8.3E-10 1.8E-14 67.3 7.7 62 78-143 47-108 (116)
38 cd05030 calgranulins Calgranul 99.1 1.1E-09 2.4E-14 63.8 6.8 65 79-143 8-79 (88)
39 KOG0040|consensus 99.0 1E-08 2.2E-13 83.1 13.2 130 4-142 2246-2397(2399)
40 cd05022 S-100A13 S-100A13: S-1 99.0 2.3E-09 5.1E-14 62.3 6.8 64 7-71 4-76 (89)
41 cd05027 S-100B S-100B: S-100B 99.0 6.1E-09 1.3E-13 60.6 7.7 62 8-70 5-79 (88)
42 PF13499 EF-hand_7: EF-hand do 99.0 1.1E-09 2.4E-14 60.3 4.3 64 12-105 1-66 (66)
43 KOG0028|consensus 99.0 2.3E-08 5E-13 63.0 10.4 92 54-146 45-137 (172)
44 smart00027 EH Eps15 homology d 98.9 8.9E-09 1.9E-13 61.0 7.8 64 4-70 3-72 (96)
45 KOG0041|consensus 98.9 3.3E-09 7.2E-14 69.1 6.4 64 79-142 99-162 (244)
46 PLN02964 phosphatidylserine de 98.9 2.2E-08 4.8E-13 76.8 10.8 86 54-143 155-243 (644)
47 KOG2643|consensus 98.9 1.9E-08 4E-13 72.7 9.0 128 10-143 317-453 (489)
48 cd05029 S-100A6 S-100A6: S-100 98.8 4.8E-08 1E-12 56.8 7.8 64 7-71 6-80 (88)
49 cd00213 S-100 S-100: S-100 dom 98.8 4E-08 8.8E-13 57.2 7.2 64 7-71 4-80 (88)
50 PF00036 EF-hand_1: EF hand; 98.8 1.3E-08 2.8E-13 46.5 3.8 27 81-107 2-28 (29)
51 KOG0031|consensus 98.8 4.9E-08 1.1E-12 61.2 7.4 60 78-141 31-90 (171)
52 cd05025 S-100A1 S-100A1: S-100 98.7 9.3E-08 2E-12 56.1 7.5 62 9-71 7-81 (92)
53 cd05024 S-100A10 S-100A10: A s 98.7 2.2E-07 4.8E-12 53.8 8.1 63 80-143 9-76 (91)
54 cd05031 S-100A10_like S-100A10 98.7 1.5E-07 3.2E-12 55.5 7.3 61 9-70 6-79 (94)
55 PF13405 EF-hand_6: EF-hand do 98.7 3.8E-08 8.3E-13 45.8 3.8 30 80-109 1-31 (31)
56 PF13833 EF-hand_8: EF-hand do 98.7 5.7E-08 1.2E-12 51.2 4.6 51 56-106 2-52 (54)
57 cd05026 S-100Z S-100Z: S-100Z 98.6 2.8E-07 6E-12 54.2 7.6 63 8-71 7-82 (93)
58 KOG0034|consensus 98.6 1E-06 2.2E-11 58.1 10.4 96 43-143 27-132 (187)
59 KOG0030|consensus 98.6 2.8E-07 6E-12 56.9 6.6 66 77-142 9-76 (152)
60 cd00052 EH Eps15 homology doma 98.6 2.5E-07 5.4E-12 50.8 6.0 54 14-70 2-61 (67)
61 PF12763 EF-hand_4: Cytoskelet 98.6 7.8E-07 1.7E-11 53.2 7.6 62 77-141 8-69 (104)
62 KOG2562|consensus 98.5 2.4E-06 5.2E-11 62.5 11.0 129 7-140 274-421 (493)
63 KOG0041|consensus 98.5 1.4E-06 3E-11 57.1 8.4 103 4-107 92-203 (244)
64 cd00051 EFh EF-hand, calcium b 98.5 7.3E-07 1.6E-11 47.6 6.2 55 13-68 2-62 (63)
65 KOG0751|consensus 98.5 5.7E-06 1.2E-10 61.2 12.3 131 9-143 31-207 (694)
66 PF00036 EF-hand_1: EF hand; 98.5 2.8E-07 6E-12 42.1 3.2 28 116-143 1-28 (29)
67 cd05030 calgranulins Calgranul 98.4 2.2E-06 4.7E-11 49.9 6.8 63 7-70 4-79 (88)
68 PRK12309 transaldolase/EF-hand 98.3 2.8E-06 6E-11 62.2 7.4 53 78-143 333-385 (391)
69 PF14658 EF-hand_9: EF-hand do 98.3 1.9E-06 4.2E-11 46.7 4.7 54 16-70 3-64 (66)
70 PF13202 EF-hand_5: EF hand; P 98.3 1.6E-06 3.5E-11 38.1 3.2 24 81-104 1-24 (25)
71 cd05023 S-100A11 S-100A11: S-1 98.3 1.1E-05 2.3E-10 47.0 7.6 63 7-70 5-80 (89)
72 KOG0751|consensus 98.2 1.3E-05 2.8E-10 59.4 8.8 122 12-139 109-240 (694)
73 KOG2643|consensus 98.2 1.5E-05 3.3E-10 58.1 8.7 122 12-140 234-381 (489)
74 cd05024 S-100A10 S-100A10: A s 98.1 4.8E-05 1E-09 44.2 8.0 63 8-71 5-77 (91)
75 KOG4666|consensus 98.1 3.5E-06 7.5E-11 59.2 3.6 92 54-147 271-362 (412)
76 KOG1029|consensus 98.1 6.4E-05 1.4E-09 58.5 10.6 132 5-141 10-255 (1118)
77 cd00252 SPARC_EC SPARC_EC; ext 98.1 2.9E-05 6.2E-10 47.4 7.1 48 53-105 59-106 (116)
78 KOG0036|consensus 98.1 7.8E-05 1.7E-09 54.1 10.2 85 54-143 26-110 (463)
79 PF14788 EF-hand_10: EF hand; 98.0 3.5E-05 7.7E-10 39.5 5.7 47 96-142 2-48 (51)
80 PF12763 EF-hand_4: Cytoskelet 98.0 1.3E-05 2.8E-10 48.0 4.6 64 4-70 3-71 (104)
81 PF10591 SPARC_Ca_bdg: Secrete 97.9 5E-06 1.1E-10 50.6 1.7 61 78-140 53-113 (113)
82 PF13202 EF-hand_5: EF hand; P 97.9 2.3E-05 5.1E-10 34.3 3.2 25 117-141 1-25 (25)
83 KOG0040|consensus 97.8 8.2E-05 1.8E-09 61.6 6.8 66 79-144 2253-2325(2399)
84 KOG0169|consensus 97.8 0.0013 2.8E-08 51.4 12.6 133 6-144 131-275 (746)
85 PF13405 EF-hand_6: EF-hand do 97.7 3.9E-05 8.3E-10 35.4 2.7 28 12-40 1-31 (31)
86 KOG4251|consensus 97.7 0.00026 5.6E-09 48.3 6.7 133 9-142 99-263 (362)
87 PF09279 EF-hand_like: Phospho 97.6 0.00022 4.8E-09 40.8 5.5 65 80-145 1-71 (83)
88 KOG0046|consensus 97.6 0.00033 7.1E-09 52.5 7.1 68 3-71 11-86 (627)
89 KOG0046|consensus 97.5 0.00045 9.7E-09 51.8 7.1 62 79-141 19-83 (627)
90 smart00054 EFh EF-hand, calciu 97.4 0.00023 5E-09 31.3 3.0 27 81-107 2-28 (29)
91 PF14788 EF-hand_10: EF hand; 97.4 0.00065 1.4E-08 34.9 4.8 48 59-107 2-49 (51)
92 PRK12309 transaldolase/EF-hand 97.4 0.0012 2.6E-08 48.6 8.1 55 40-108 328-386 (391)
93 KOG4065|consensus 97.4 0.00082 1.8E-08 40.5 5.8 62 79-140 66-142 (144)
94 KOG4251|consensus 97.3 0.0016 3.5E-08 44.5 6.9 83 59-141 216-307 (362)
95 KOG0035|consensus 97.3 0.01 2.2E-07 47.6 12.2 130 3-141 739-884 (890)
96 KOG4666|consensus 97.0 0.003 6.6E-08 44.9 6.2 84 54-142 239-323 (412)
97 KOG1707|consensus 97.0 0.015 3.3E-07 44.6 10.1 134 2-142 186-376 (625)
98 KOG0377|consensus 97.0 0.0031 6.8E-08 46.6 6.3 67 43-109 547-617 (631)
99 smart00054 EFh EF-hand, calciu 96.9 0.0016 3.4E-08 28.4 2.8 27 117-143 2-28 (29)
100 KOG0038|consensus 96.7 0.032 6.9E-07 35.3 8.2 85 21-107 83-177 (189)
101 PLN02952 phosphoinositide phos 96.6 0.039 8.4E-07 43.0 10.0 89 54-143 12-110 (599)
102 PF08726 EFhand_Ca_insen: Ca2+ 96.6 0.00074 1.6E-08 37.2 0.6 57 77-141 4-67 (69)
103 KOG2562|consensus 96.4 0.015 3.3E-07 43.2 6.4 58 81-138 313-374 (493)
104 KOG4065|consensus 96.4 0.023 4.9E-07 34.4 5.9 61 4-67 62-142 (144)
105 KOG2243|consensus 96.1 0.013 2.8E-07 49.4 5.2 59 84-143 4062-4120(5019)
106 KOG1955|consensus 96.1 0.021 4.6E-07 43.0 5.8 62 78-141 230-291 (737)
107 PF05517 p25-alpha: p25-alpha 96.0 0.074 1.6E-06 34.2 7.4 61 82-142 2-68 (154)
108 KOG3555|consensus 95.9 0.025 5.3E-07 40.7 5.4 66 77-146 248-313 (434)
109 PF05042 Caleosin: Caleosin re 95.9 0.18 3.8E-06 32.9 8.8 127 12-140 8-163 (174)
110 PF09279 EF-hand_like: Phospho 95.9 0.066 1.4E-06 30.4 6.2 58 13-71 2-70 (83)
111 PF09069 EF-hand_3: EF-hand; 95.7 0.19 4.1E-06 29.2 7.9 64 78-144 2-76 (90)
112 KOG0042|consensus 95.3 0.05 1.1E-06 41.8 5.2 64 80-143 594-657 (680)
113 KOG1265|consensus 95.1 0.45 9.8E-06 38.7 10.2 113 23-143 162-299 (1189)
114 PF10591 SPARC_Ca_bdg: Secrete 95.0 0.02 4.4E-07 34.8 2.1 54 47-103 59-112 (113)
115 KOG0998|consensus 94.9 0.033 7.2E-07 45.2 3.7 132 5-141 123-343 (847)
116 PF05042 Caleosin: Caleosin re 94.7 0.27 5.8E-06 32.1 6.8 64 80-143 8-124 (174)
117 KOG4347|consensus 94.6 0.075 1.6E-06 41.3 4.6 71 59-129 535-605 (671)
118 PF05517 p25-alpha: p25-alpha 94.4 0.16 3.6E-06 32.6 5.3 57 13-70 1-69 (154)
119 KOG0042|consensus 94.4 0.17 3.6E-06 39.1 6.0 71 4-75 586-662 (680)
120 KOG4578|consensus 94.3 0.058 1.3E-06 38.6 3.2 63 80-142 334-397 (421)
121 PF08976 DUF1880: Domain of un 93.4 0.086 1.9E-06 31.9 2.5 32 111-142 3-34 (118)
122 KOG1955|consensus 93.0 0.45 9.8E-06 36.3 6.1 66 4-72 224-295 (737)
123 KOG0035|consensus 91.8 0.63 1.4E-05 38.0 6.0 67 79-145 747-818 (890)
124 PLN02222 phosphoinositide phos 91.1 2.1 4.5E-05 33.7 8.0 66 77-144 23-91 (581)
125 KOG0169|consensus 91.0 0.89 1.9E-05 36.3 6.0 61 80-140 137-197 (746)
126 KOG1029|consensus 90.4 1.4 3E-05 35.6 6.5 57 83-142 20-76 (1118)
127 PLN02230 phosphoinositide phos 90.4 3 6.5E-05 32.9 8.3 67 76-143 26-102 (598)
128 PLN02228 Phosphoinositide phos 90.0 3.4 7.3E-05 32.5 8.3 66 77-144 22-93 (567)
129 KOG3866|consensus 89.7 0.72 1.6E-05 33.1 4.2 58 84-141 249-322 (442)
130 KOG3449|consensus 87.4 3.1 6.7E-05 25.0 5.2 45 81-125 3-47 (112)
131 KOG1264|consensus 87.3 6 0.00013 32.5 8.1 139 5-144 137-294 (1267)
132 PF08414 NADPH_Ox: Respiratory 87.2 3.3 7.2E-05 24.5 5.2 24 12-36 31-54 (100)
133 PF07308 DUF1456: Protein of u 86.9 3.6 7.8E-05 22.6 5.0 45 97-141 15-59 (68)
134 PF09069 EF-hand_3: EF-hand; 86.2 4.9 0.00011 23.4 6.8 61 10-71 2-76 (90)
135 KOG0039|consensus 85.2 2.9 6.3E-05 33.4 5.6 80 56-143 2-89 (646)
136 PF08414 NADPH_Ox: Respiratory 85.1 6 0.00013 23.5 5.8 58 79-141 30-90 (100)
137 TIGR01848 PHA_reg_PhaR polyhyd 84.7 4.1 9E-05 24.4 4.8 20 87-106 11-30 (107)
138 PF07879 PHB_acc_N: PHB/PHA ac 84.5 2.3 5E-05 23.0 3.4 39 86-124 10-58 (64)
139 PTZ00373 60S Acidic ribosomal 84.3 6.9 0.00015 23.8 5.7 44 82-125 6-49 (112)
140 PLN02952 phosphoinositide phos 84.2 16 0.00034 29.1 9.0 84 23-107 14-110 (599)
141 PLN02223 phosphoinositide phos 84.0 9.2 0.0002 29.9 7.6 68 76-144 13-93 (537)
142 cd08807 CARD_CARD10_CARMA3 Cas 83.9 1.7 3.8E-05 24.8 2.9 55 93-149 28-82 (86)
143 KOG2871|consensus 83.3 1.3 2.9E-05 32.5 2.8 61 78-138 308-369 (449)
144 PF12174 RST: RCD1-SRO-TAF4 (R 81.7 1.6 3.4E-05 24.1 2.2 48 57-108 7-54 (70)
145 KOG4578|consensus 81.0 1.4 3E-05 31.9 2.2 55 54-108 345-399 (421)
146 KOG1707|consensus 81.0 3.9 8.4E-05 32.1 4.6 69 4-73 308-380 (625)
147 KOG4347|consensus 80.9 2 4.3E-05 33.9 3.1 95 4-101 497-612 (671)
148 cd05833 Ribosomal_P2 Ribosomal 80.9 9.4 0.0002 23.1 5.5 52 83-139 5-56 (109)
149 PF03672 UPF0154: Uncharacteri 80.9 4.5 9.9E-05 21.9 3.7 30 23-53 29-58 (64)
150 PF14513 DAG_kinase_N: Diacylg 80.5 1.9 4.2E-05 27.2 2.5 50 92-143 4-60 (138)
151 PF03672 UPF0154: Uncharacteri 78.8 6.8 0.00015 21.2 3.9 32 93-124 29-60 (64)
152 PF14513 DAG_kinase_N: Diacylg 78.7 11 0.00023 23.9 5.4 39 54-92 44-82 (138)
153 cd07313 terB_like_2 tellurium 78.6 3.8 8.3E-05 24.1 3.4 54 54-107 11-65 (104)
154 PF01023 S_100: S-100/ICaBP ty 78.2 6.7 0.00014 19.4 3.8 30 8-38 3-36 (44)
155 PF12174 RST: RCD1-SRO-TAF4 (R 78.0 5.6 0.00012 22.0 3.6 31 112-142 22-52 (70)
156 PF09068 EF-hand_2: EF hand; 77.7 4.3 9.3E-05 25.3 3.4 28 81-108 99-126 (127)
157 KOG2871|consensus 76.8 2.3 4.9E-05 31.4 2.2 58 11-69 309-373 (449)
158 PRK00523 hypothetical protein; 76.3 7.2 0.00016 21.6 3.6 30 23-53 37-66 (72)
159 cd08330 CARD_ASC_NALP1 Caspase 76.2 6.7 0.00015 22.3 3.7 51 93-148 27-77 (82)
160 TIGR03573 WbuX N-acetyl sugar 75.7 8.7 0.00019 28.2 5.1 44 92-141 299-342 (343)
161 PRK00523 hypothetical protein; 75.0 9.4 0.0002 21.2 3.9 33 92-124 36-68 (72)
162 COG3763 Uncharacterized protei 74.8 11 0.00023 20.8 4.0 34 92-125 35-68 (71)
163 PLN02508 magnesium-protoporphy 74.6 8.1 0.00018 28.1 4.5 78 40-128 35-123 (357)
164 PLN00138 large subunit ribosom 74.4 17 0.00037 22.2 5.7 42 84-125 6-47 (113)
165 PHA02105 hypothetical protein 73.9 8.7 0.00019 20.2 3.4 47 95-141 4-55 (68)
166 PLN02222 phosphoinositide phos 72.4 27 0.00058 27.8 7.1 58 12-70 26-90 (581)
167 PRK01844 hypothetical protein; 72.0 11 0.00023 21.0 3.6 30 23-53 36-65 (72)
168 PF01325 Fe_dep_repress: Iron 71.6 13 0.00029 19.7 4.7 52 4-61 1-54 (60)
169 PF00404 Dockerin_1: Dockerin 71.6 5.5 0.00012 16.4 1.9 14 90-103 2-15 (21)
170 TIGR01639 P_fal_TIGR01639 Plas 70.4 14 0.0003 19.7 3.9 32 93-124 7-38 (61)
171 cd08785 CARD_CARD9-like Caspas 69.7 5.9 0.00013 22.8 2.5 55 92-148 27-81 (86)
172 PRK01844 hypothetical protein; 69.3 15 0.00033 20.4 3.8 33 92-124 35-67 (72)
173 PF03979 Sigma70_r1_1: Sigma-7 69.2 5.6 0.00012 22.5 2.3 30 93-124 19-48 (82)
174 cd04411 Ribosomal_P1_P2_L12p R 68.3 23 0.00051 21.2 6.0 41 96-141 17-57 (105)
175 PF08461 HTH_12: Ribonuclease 68.2 9.3 0.0002 20.7 3.0 37 92-128 10-46 (66)
176 PF11116 DUF2624: Protein of u 68.2 21 0.00045 20.6 6.1 31 95-125 14-44 (85)
177 KOG2243|consensus 68.0 11 0.00025 33.3 4.5 52 17-70 4063-4120(5019)
178 PF06648 DUF1160: Protein of u 67.7 27 0.00058 21.7 5.1 48 74-124 32-80 (122)
179 PLN02228 Phosphoinositide phos 67.1 42 0.00092 26.7 7.2 63 44-106 22-91 (567)
180 PRK00819 RNA 2'-phosphotransfe 66.8 10 0.00022 25.1 3.5 42 20-62 28-70 (179)
181 PF06163 DUF977: Bacterial pro 66.4 15 0.00032 22.9 3.8 35 1-36 1-36 (127)
182 PF11829 DUF3349: Protein of u 66.1 22 0.00047 21.0 4.3 29 96-124 20-48 (96)
183 COG4103 Uncharacterized protei 65.4 21 0.00046 22.7 4.4 61 83-145 34-96 (148)
184 KOG2301|consensus 64.9 5.7 0.00012 35.2 2.4 67 76-143 1414-1484(1592)
185 cd08809 CARD_CARD9 Caspase act 64.7 6.8 0.00015 22.5 2.0 54 93-148 28-81 (86)
186 KOG1954|consensus 64.6 11 0.00023 28.4 3.5 56 81-139 446-501 (532)
187 PF09336 Vps4_C: Vps4 C termin 64.6 13 0.00028 20.0 3.0 27 95-121 29-55 (62)
188 PF12419 DUF3670: SNF2 Helicas 63.6 20 0.00043 22.6 4.3 49 92-140 80-138 (141)
189 KOG0998|consensus 63.2 4.9 0.00011 33.3 1.7 61 80-142 12-72 (847)
190 PF06569 DUF1128: Protein of u 62.6 16 0.00034 20.3 3.1 30 8-38 36-65 (71)
191 PF05099 TerB: Tellurite resis 61.8 4.7 0.0001 25.1 1.2 86 54-142 35-125 (140)
192 TIGR01267 Phe4hydrox_mono phen 59.7 59 0.0013 22.9 7.1 66 4-71 10-89 (248)
193 PF01885 PTS_2-RNA: RNA 2'-pho 58.9 24 0.00051 23.6 4.1 36 89-124 26-61 (186)
194 PF00046 Homeobox: Homeobox do 58.2 24 0.00052 18.0 4.1 41 4-50 6-46 (57)
195 cd08324 CARD_NOD1_CARD4 Caspas 58.1 26 0.00057 20.1 3.6 45 93-142 27-71 (85)
196 COG2818 Tag 3-methyladenine DN 57.6 15 0.00033 24.4 3.0 46 78-123 54-99 (188)
197 COG4807 Uncharacterized protei 57.2 46 0.001 20.9 8.4 87 30-125 19-128 (155)
198 cd08808 CARD_CARD11_CARMA1 Cas 56.6 13 0.00028 21.4 2.2 55 93-149 28-82 (86)
199 PRK11913 phhA phenylalanine 4- 55.8 74 0.0016 22.8 7.1 66 4-71 26-105 (275)
200 TIGR00135 gatC glutamyl-tRNA(G 54.5 36 0.00078 19.7 4.0 29 96-124 1-29 (93)
201 PF01885 PTS_2-RNA: RNA 2'-pho 54.2 23 0.00051 23.6 3.5 42 20-62 27-69 (186)
202 PRK00819 RNA 2'-phosphotransfe 53.8 39 0.00084 22.4 4.4 34 90-123 28-61 (179)
203 PF04876 Tenui_NCP: Tenuivirus 53.7 26 0.00056 22.5 3.4 14 93-106 97-110 (175)
204 PRK06402 rpl12p 50S ribosomal 53.4 48 0.0011 20.0 5.9 31 95-125 16-46 (106)
205 COG5394 Uncharacterized protei 53.1 40 0.00086 22.0 4.2 19 88-106 21-39 (193)
206 PF13608 Potyvirid-P3: Protein 53.1 14 0.00029 28.4 2.5 26 87-112 359-386 (445)
207 PLN02223 phosphoinositide phos 53.1 39 0.00085 26.6 4.9 59 11-70 16-92 (537)
208 PF09373 PMBR: Pseudomurein-bi 51.7 20 0.00043 16.4 2.1 15 93-107 2-16 (33)
209 KOG4004|consensus 51.7 7.8 0.00017 26.2 0.9 21 82-102 225-245 (259)
210 KOG2301|consensus 51.0 15 0.00032 32.8 2.7 66 4-70 1410-1484(1592)
211 KOG3555|consensus 50.7 22 0.00048 26.3 3.1 63 79-141 211-276 (434)
212 PF09724 DUF2036: Uncharacteri 50.5 96 0.0021 22.6 10.0 19 131-149 247-265 (325)
213 cd08329 CARD_BIRC2_BIRC3 Caspa 50.3 31 0.00067 20.2 3.2 51 93-148 35-85 (94)
214 PLN02230 phosphoinositide phos 50.2 1.1E+02 0.0025 24.6 7.1 59 11-70 29-102 (598)
215 cd03348 pro_PheOH Prokaryotic 50.2 84 0.0018 21.8 7.0 66 4-71 10-89 (228)
216 cd01671 CARD Caspase activatio 49.8 38 0.00082 18.6 3.5 48 93-145 25-72 (80)
217 PF13075 DUF3939: Protein of u 49.6 7.5 0.00016 24.5 0.6 46 94-143 8-53 (140)
218 TIGR02675 tape_meas_nterm tape 49.5 45 0.00098 18.5 4.8 33 5-38 10-42 (75)
219 KOG4070|consensus 49.0 23 0.0005 22.8 2.7 13 96-108 34-46 (180)
220 cd00361 arom_aa_hydroxylase Bi 49.0 87 0.0019 21.6 7.2 113 4-123 4-147 (221)
221 KOG4301|consensus 48.5 35 0.00076 25.2 3.8 57 83-140 114-170 (434)
222 COG4103 Uncharacterized protei 48.2 72 0.0016 20.4 6.4 89 15-107 34-129 (148)
223 COG4359 Uncharacterized conser 47.7 86 0.0019 21.2 6.2 16 56-71 11-26 (220)
224 cd08327 CARD_RAIDD Caspase act 47.7 57 0.0012 19.1 4.1 49 92-146 32-80 (94)
225 PF07553 Lipoprotein_Ltp: Host 47.7 38 0.00083 17.1 3.6 31 93-123 16-47 (48)
226 PF12631 GTPase_Cys_C: Catalyt 47.0 47 0.001 18.2 3.5 45 80-124 24-72 (73)
227 PRK00034 gatC aspartyl/glutamy 46.9 56 0.0012 18.9 4.1 29 96-124 3-31 (95)
228 PF07499 RuvA_C: RuvA, C-termi 46.9 37 0.00081 16.8 4.8 40 98-141 3-42 (47)
229 PRK14981 DNA-directed RNA poly 45.6 54 0.0012 19.9 3.9 26 98-123 81-106 (112)
230 PF08730 Rad33: Rad33; InterP 45.3 88 0.0019 20.6 10.5 39 4-43 7-46 (170)
231 KOG4286|consensus 43.7 43 0.00093 27.6 3.9 50 80-129 471-520 (966)
232 TIGR02787 codY_Gpos GTP-sensin 43.3 43 0.00094 23.5 3.5 33 3-36 175-208 (251)
233 PF02337 Gag_p10: Retroviral G 42.9 67 0.0015 18.7 3.8 38 30-67 12-58 (90)
234 PF12486 DUF3702: ImpA domain 42.8 43 0.00092 21.5 3.2 29 80-108 70-98 (148)
235 cd05831 Ribosomal_P1 Ribosomal 42.3 75 0.0016 19.0 4.6 44 92-140 14-57 (103)
236 COG5228 POP2 mRNA deadenylase 41.9 64 0.0014 22.4 4.1 57 92-149 135-201 (299)
237 cd08316 Death_FAS_TNFRSF6 Deat 40.2 79 0.0017 18.7 8.2 78 24-122 16-93 (97)
238 PF11848 DUF3368: Domain of un 40.1 51 0.0011 16.5 3.8 33 92-124 14-47 (48)
239 PF13623 SurA_N_2: SurA N-term 40.1 79 0.0017 20.2 4.2 41 100-140 94-144 (145)
240 PF07862 Nif11: Nitrogen fixat 39.6 43 0.00094 16.6 2.5 21 28-48 28-48 (49)
241 PF12266 DUF3613: Protein of u 39.5 15 0.00033 20.1 0.8 19 131-149 44-62 (67)
242 CHL00185 ycf59 magnesium-proto 39.4 44 0.00095 24.5 3.2 82 36-128 31-123 (351)
243 PF06384 ICAT: Beta-catenin-in 39.1 63 0.0014 18.3 3.2 23 100-122 21-43 (78)
244 COG0721 GatC Asp-tRNAAsn/Glu-t 38.8 83 0.0018 18.5 3.8 30 95-124 2-31 (96)
245 KOG0506|consensus 38.1 1.2E+02 0.0026 23.7 5.4 62 82-143 89-158 (622)
246 cd01047 ACSF Aerobic Cyclase S 38.0 57 0.0012 23.7 3.5 82 36-128 15-107 (323)
247 PRK08181 transposase; Validate 37.8 1.4E+02 0.003 21.3 5.5 45 24-69 5-50 (269)
248 COG1059 Thermostable 8-oxoguan 36.3 1.4E+02 0.003 20.3 5.0 23 91-113 66-88 (210)
249 COG1321 TroR Mn-dependent tran 35.4 1.2E+02 0.0027 19.5 5.5 55 3-63 2-58 (154)
250 PF02761 Cbl_N2: CBL proto-onc 35.4 92 0.002 18.0 6.0 63 44-107 5-70 (85)
251 cd00086 homeodomain Homeodomai 35.3 64 0.0014 16.2 4.7 43 4-52 6-48 (59)
252 PF00690 Cation_ATPase_N: Cati 35.3 74 0.0016 17.0 3.1 27 83-109 8-34 (69)
253 COG5562 Phage envelope protein 35.1 29 0.00064 21.8 1.6 47 93-143 54-100 (137)
254 smart00513 SAP Putative DNA-bi 35.0 52 0.0011 15.0 2.5 17 95-111 3-19 (35)
255 cd08315 Death_TRAILR_DR4_DR5 D 35.0 97 0.0021 18.2 8.5 86 12-121 5-90 (96)
256 PF13331 DUF4093: Domain of un 34.4 75 0.0016 18.3 3.1 27 93-121 60-86 (87)
257 PF12207 DUF3600: Domain of un 34.2 80 0.0017 20.3 3.4 53 54-108 64-118 (162)
258 PRK13654 magnesium-protoporphy 34.2 53 0.0011 24.2 2.9 82 36-128 35-127 (355)
259 PF02037 SAP: SAP domain; Int 34.1 55 0.0012 15.1 2.2 17 95-111 3-19 (35)
260 PF05872 DUF853: Bacterial pro 34.1 79 0.0017 24.6 3.9 36 4-40 121-158 (502)
261 TIGR03685 L21P_arch 50S riboso 33.8 1.1E+02 0.0024 18.4 5.9 31 95-125 16-46 (105)
262 PF04433 SWIRM: SWIRM domain; 33.7 78 0.0017 17.9 3.2 31 54-89 49-79 (86)
263 PF04558 tRNA_synt_1c_R1: Glut 33.1 45 0.00098 21.8 2.3 47 77-124 83-129 (164)
264 PF14848 HU-DNA_bdg: DNA-bindi 33.0 1.2E+02 0.0026 18.6 4.2 33 92-124 25-57 (124)
265 cd05521 Bromo_Rsc1_2_I Bromodo 32.7 33 0.00072 20.5 1.5 23 127-149 18-41 (106)
266 TIGR02029 AcsF magnesium-proto 32.4 59 0.0013 23.8 2.9 82 36-128 25-117 (337)
267 PF15507 DUF4649: Domain of un 32.1 44 0.00096 18.6 1.8 17 133-149 19-38 (72)
268 PF06207 DUF1002: Protein of u 31.5 1E+02 0.0022 21.4 3.8 47 97-143 173-223 (225)
269 PF07128 DUF1380: Protein of u 31.2 1E+02 0.0022 19.6 3.5 30 96-125 27-56 (139)
270 cd05832 Ribosomal_L12p Ribosom 30.9 1.3E+02 0.0027 18.2 5.8 40 95-139 16-55 (106)
271 cd07176 terB tellurite resista 30.5 30 0.00065 20.3 1.1 85 54-142 14-106 (111)
272 cd05517 Bromo_polybromo_II Bro 30.4 51 0.0011 19.6 2.1 23 127-149 17-40 (103)
273 PF04081 DNA_pol_delta_4: DNA 30.3 1.4E+02 0.0031 18.6 5.7 49 4-53 55-109 (124)
274 PF10548 P22_AR_C: P22AR C-ter 29.9 96 0.0021 17.3 3.0 40 2-43 5-44 (74)
275 PF10897 DUF2713: Protein of u 29.9 1.7E+02 0.0036 20.0 4.5 42 55-96 174-226 (246)
276 PF10437 Lip_prot_lig_C: Bacte 29.9 1.1E+02 0.0024 17.2 3.9 42 98-141 44-86 (86)
277 COG5069 SAC6 Ca2+-binding acti 29.7 1E+02 0.0022 24.2 3.8 79 7-89 481-564 (612)
278 COG2058 RPP1A Ribosomal protei 29.5 1.4E+02 0.0029 18.2 5.1 31 95-125 16-46 (109)
279 COG1460 Uncharacterized protei 29.3 1.2E+02 0.0026 18.6 3.5 28 97-124 81-108 (114)
280 PTZ00315 2'-phosphotransferase 29.1 91 0.002 25.0 3.7 41 21-62 401-442 (582)
281 TIGR03798 ocin_TIGR03798 bacte 29.1 99 0.0021 16.4 3.9 25 96-120 25-49 (64)
282 PF10208 Armet: Degradation ar 28.9 1.7E+02 0.0036 19.0 4.5 37 112-148 107-143 (154)
283 COG0735 Fur Fe2+/Zn2+ uptake r 28.9 1.6E+02 0.0034 18.7 5.2 23 95-117 36-58 (145)
284 cd06395 PB1_Map2k5 PB1 domain 28.8 76 0.0017 18.1 2.4 45 57-106 21-67 (91)
285 cd03345 eu_TyrOH Eukaryotic ty 28.7 2.3E+02 0.0051 20.6 11.2 113 5-124 60-206 (298)
286 cd07316 terB_like_DjlA N-termi 28.5 1.3E+02 0.0027 17.4 5.0 79 54-135 11-93 (106)
287 cd03035 ArsC_Yffb Arsenate Red 28.3 67 0.0015 19.1 2.3 48 93-143 33-83 (105)
288 PF14069 SpoVIF: Stage VI spor 28.3 1.2E+02 0.0026 17.2 5.4 45 97-142 29-77 (79)
289 cd08332 CARD_CASP2 Caspase act 28.2 1.3E+02 0.0027 17.4 3.9 46 93-143 32-77 (90)
290 PF08328 ASL_C: Adenylosuccina 28.1 1.5E+02 0.0033 18.2 4.3 20 95-116 83-102 (115)
291 KOG2303|consensus 27.6 3.2E+02 0.0069 21.8 7.9 27 97-123 612-638 (706)
292 PF04361 DUF494: Protein of un 27.4 1.8E+02 0.0039 18.8 5.3 42 81-124 5-47 (155)
293 KOG3449|consensus 27.2 1.5E+02 0.0033 18.0 6.3 51 15-67 5-57 (112)
294 PF03874 RNA_pol_Rpb4: RNA pol 27.2 86 0.0019 18.8 2.7 10 96-105 71-80 (117)
295 cd08815 Death_TNFRSF25_DR3 Dea 26.9 1.3E+02 0.0028 17.0 3.1 24 95-120 8-31 (77)
296 PF07848 PaaX: PaaX-like prote 26.6 1.2E+02 0.0026 16.6 3.5 42 81-124 6-47 (70)
297 PF10955 DUF2757: Protein of u 26.4 16 0.00035 20.6 -0.5 41 108-149 27-69 (76)
298 cd08325 CARD_CASP1-like Caspas 26.2 1.3E+02 0.0029 17.0 3.4 53 93-149 28-80 (83)
299 cd08784 Death_DRs Death Domain 25.6 1.3E+02 0.0029 16.8 6.7 67 28-115 10-76 (79)
300 PRK09462 fur ferric uptake reg 25.5 1.8E+02 0.0039 18.3 4.9 41 84-124 22-62 (148)
301 PHA02771 hypothetical protein; 25.3 1.5E+02 0.0033 17.3 3.4 13 112-124 32-44 (90)
302 cd08313 Death_TNFR1 Death doma 25.3 1.4E+02 0.003 16.9 3.2 26 95-122 8-33 (80)
303 PF02885 Glycos_trans_3N: Glyc 25.1 1.2E+02 0.0026 16.1 3.9 14 94-107 30-43 (66)
304 PF00325 Crp: Bacterial regula 25.0 85 0.0019 14.3 2.5 25 96-125 3-27 (32)
305 PRK00199 ihfB integration host 24.9 1.5E+02 0.0032 17.0 4.0 28 96-123 1-28 (94)
306 PF01726 LexA_DNA_bind: LexA D 24.8 1.3E+02 0.0027 16.2 4.8 53 3-59 2-56 (65)
307 PF08006 DUF1700: Protein of u 24.8 1.2E+02 0.0026 19.8 3.3 6 63-68 5-10 (181)
308 PHA02943 hypothetical protein; 24.7 2.1E+02 0.0045 18.7 5.9 90 1-106 1-105 (165)
309 smart00657 RPOL4c DNA-directed 24.6 1.6E+02 0.0034 18.0 3.5 28 97-124 84-111 (118)
310 PF08566 Pam17: Mitochondrial 24.5 27 0.00059 23.0 0.2 8 142-149 138-145 (173)
311 PF14164 YqzH: YqzH-like prote 24.4 1.3E+02 0.0029 16.3 3.4 29 80-108 9-38 (64)
312 PF08671 SinI: Anti-repressor 24.2 83 0.0018 14.2 1.7 11 96-106 17-27 (30)
313 PRK07571 bidirectional hydroge 24.1 1.6E+02 0.0035 19.3 3.7 21 2-22 13-33 (169)
314 PF07261 DnaB_2: Replication i 24.1 1E+02 0.0022 16.7 2.5 41 85-125 2-43 (77)
315 cd03347 eu_PheOH Eukaryotic ph 24.0 3E+02 0.0064 20.2 11.0 114 4-124 60-207 (306)
316 KOG2351|consensus 24.0 1.2E+02 0.0026 19.0 2.8 28 97-124 100-127 (134)
317 KOG4403|consensus 24.0 1.4E+02 0.003 23.1 3.6 51 54-108 80-130 (575)
318 PF09693 Phage_XkdX: Phage unc 24.0 60 0.0013 15.6 1.3 13 93-105 24-36 (40)
319 PF09873 DUF2100: Uncharacteri 23.8 1.9E+02 0.0042 19.8 4.0 62 54-126 37-98 (215)
320 cd08806 CARD_CARD14_CARMA2 Cas 23.4 43 0.00093 19.3 0.8 22 128-149 61-82 (86)
321 PF06226 DUF1007: Protein of u 23.4 94 0.002 21.1 2.6 25 84-108 55-79 (212)
322 KOG0403|consensus 23.3 3.8E+02 0.0082 21.2 7.6 78 11-108 510-587 (645)
323 TIGR02613 mob_myst_B mobile my 23.2 2E+02 0.0043 19.1 4.1 21 90-110 126-146 (186)
324 PF04282 DUF438: Family of unk 23.2 1.5E+02 0.0032 16.5 5.6 42 78-123 15-57 (71)
325 PF10982 DUF2789: Protein of u 23.1 1.3E+02 0.0028 16.9 2.6 31 100-130 7-37 (74)
326 PF09312 SurA_N: SurA N-termin 22.8 1.5E+02 0.0033 17.9 3.2 33 38-70 62-96 (118)
327 PF09066 B2-adapt-app_C: Beta2 22.7 73 0.0016 19.0 1.8 18 92-109 3-20 (114)
328 COG3636 Predicted transcriptio 22.7 1.7E+02 0.0036 17.5 3.1 21 21-42 71-91 (100)
329 COG2879 Uncharacterized small 22.5 86 0.0019 16.9 1.8 16 131-146 22-37 (65)
330 COG1859 KptA RNA:NAD 2'-phosph 22.5 2.1E+02 0.0046 19.7 4.0 36 90-125 54-89 (211)
331 TIGR00988 hip integration host 22.4 1.7E+02 0.0036 16.8 4.0 28 96-123 1-28 (94)
332 PF09966 DUF2200: Uncharacteri 22.3 1.3E+02 0.0028 18.2 2.7 36 97-141 24-60 (111)
333 PF11020 DUF2610: Domain of un 21.9 1E+02 0.0022 17.5 2.1 33 109-141 43-75 (82)
334 PF01316 Arg_repressor: Argini 21.9 1.6E+02 0.0034 16.2 3.8 32 94-125 18-49 (70)
335 PF12872 OST-HTH: OST-HTH/LOTU 21.7 1.4E+02 0.0031 15.9 2.8 37 93-141 21-57 (74)
336 cd00171 Sec7 Sec7 domain; Doma 21.5 2.6E+02 0.0056 18.6 11.8 39 87-125 141-181 (185)
337 PF01988 VIT1: VIT family; In 21.3 1.8E+02 0.0038 19.8 3.6 32 96-129 80-111 (213)
338 PF00351 Biopterin_H: Biopteri 21.2 2.2E+02 0.0048 21.1 4.2 114 4-124 60-207 (332)
339 PF01498 HTH_Tnp_Tc3_2: Transp 21.2 1.3E+02 0.0028 16.1 2.5 33 21-54 9-41 (72)
340 TIGR01446 DnaD_dom DnaD and ph 21.2 1.4E+02 0.003 16.0 2.7 37 88-124 5-42 (73)
341 TIGR03849 arch_ComA phosphosul 21.1 3.1E+02 0.0066 19.3 5.7 49 92-140 167-222 (237)
342 PF05788 Orbi_VP1: Orbivirus R 21.0 1.8E+02 0.0039 25.3 4.0 36 92-127 1134-1169(1301)
343 COG3413 Predicted DNA binding 20.9 2.1E+02 0.0045 19.3 3.9 32 4-36 155-188 (215)
344 PRK10353 3-methyl-adenine DNA 20.8 98 0.0021 20.8 2.2 46 78-123 53-98 (187)
345 KOG4629|consensus 20.8 2.4E+02 0.0053 23.4 4.7 55 80-141 405-459 (714)
346 TIGR01529 argR_whole arginine 20.6 2.4E+02 0.0052 17.9 4.1 34 92-125 13-46 (146)
347 KOG2278|consensus 20.4 1.4E+02 0.003 19.9 2.7 35 89-123 28-62 (207)
348 PF04157 EAP30: EAP30/Vps36 fa 20.3 3E+02 0.0064 18.8 11.0 34 93-126 111-147 (223)
349 COG4465 CodY Pleiotropic trans 20.3 1.3E+02 0.0028 20.9 2.7 29 4-33 182-211 (261)
350 PRK00441 argR arginine repress 20.3 2.5E+02 0.0054 18.0 5.1 38 15-53 8-45 (149)
351 PF07328 VirD1: T-DNA border e 20.2 2.4E+02 0.0053 17.8 3.6 38 97-138 72-109 (147)
352 PRK04280 arginine repressor; P 20.1 1.8E+02 0.004 18.6 3.3 32 94-125 17-48 (148)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=4.2e-30 Score=162.43 Aligned_cols=141 Identities=35% Similarity=0.597 Sum_probs=133.4
Q ss_pred CCcCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHHhc---CCCcCHHHHHHHHcccccCCC
Q psy12589 2 AHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEK---GGKLSFPDFLKVMHTHSKAED 76 (149)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~g~i~~~ef~~~~~~~~~~~~ 76 (149)
..+|+.+++++|+++|+.+|++ |.| +..+|..+++.+|.+++.+++.+++..- ++.|+|.+|+.++.......+
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I-~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLI-DRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCC-cHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCC
Confidence 4579999999999999999984 999 9999999999999999999999999843 489999999999999888787
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..++++.+|+.||.|++|+|+..+++++++.+|..+++++++.+++.++.|++|.|+|++|+..+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999999998765
No 2
>KOG0027|consensus
Probab=99.96 E-value=3.2e-27 Score=151.31 Aligned_cols=138 Identities=34% Similarity=0.637 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCCC-
Q psy12589 5 FREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI- 77 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~- 77 (149)
++..++..++.+|+.+|++ |.| +..+|..+++.+|..++..++..++. +++|.|++.+|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i-~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKI-SVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc
Confidence 6788899999999999976 899 99999999999999999999999998 578999999999999876654433
Q ss_pred ---HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 78 ---PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 78 ---~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+.++.+|+.||++++|+||.+||+.+|..+|.+.+.++++.+++.++.|++|.|+|.+|++++..
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 458999999999999999999999999999999999999999999999999999999999999875
No 3
>KOG0031|consensus
Probab=99.93 E-value=9.7e-25 Score=134.73 Aligned_cols=140 Identities=29% Similarity=0.536 Sum_probs=134.1
Q ss_pred CcCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCcCHHHHHHHHcccccCCCCHHH
Q psy12589 3 HHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKE 80 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~ 80 (149)
.++++.++.+++++|+.+|.| |.| +.++|+..+.++|..++++++..++...+|-|+|.-|+.++-......++.+.
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~I-dkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~ 102 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFI-DKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEV 102 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHH
Confidence 468999999999999999965 999 99999999999999999999999999999999999999999998988888889
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+..+|..||++++|.|..+.++++|...|.++++++++.+++.+..+..|.++|..|+.++..
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999873
No 4
>PTZ00183 centrin; Provisional
Probab=99.92 E-value=2e-23 Score=134.55 Aligned_cols=144 Identities=33% Similarity=0.549 Sum_probs=129.0
Q ss_pred CcCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCC
Q psy12589 3 HHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED 76 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~ 76 (149)
..+++.++.++..+|..+|++ |.| +..+|..+++.+|..++...+..++. +++|.|+|.+|+..+........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i-~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTI-DPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 368899999999999999975 899 99999999999998888888888886 68899999999998776544444
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCC
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDY 148 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~ 148 (149)
..+.++.+|+.+|.+++|.|+.+||..++..+|.+++.+++..++..++.+++|.|++++|..++.. .|.+
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~-~~~~ 158 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK-TNLF 158 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc-ccCC
Confidence 5678999999999999999999999999999999999999999999999999999999999999887 6653
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.92 E-value=2.3e-23 Score=132.94 Aligned_cols=142 Identities=42% Similarity=0.733 Sum_probs=128.1
Q ss_pred CCCcCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccC
Q psy12589 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKA 74 (149)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~ 74 (149)
|+..++++++..++..|..+|.+ |.| +..+|..++..++..++...+..+++ +++|.|+|++|+..+......
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i-~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 79 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD 79 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcC-CHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC
Confidence 67889999999999999999975 999 99999999999998888888888887 678999999999998765444
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 75 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 75 ~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
......+..+|+.+|.+++|.|+.++|+.++..+|..++.+++..++..++.+++|.|+|.+|+.++..
T Consensus 80 ~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 80 TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 444567899999999999999999999999999998899999999999999999999999999998764
No 6
>KOG0028|consensus
Probab=99.92 E-value=2.5e-23 Score=129.36 Aligned_cols=139 Identities=35% Similarity=0.582 Sum_probs=130.5
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCCC
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI 77 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~ 77 (149)
.+++.+.++++..|..+|++ |.| +..+|..+++++|+.+...++..++. ++.|.|+|++|+..+.......++
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~i-D~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKI-DVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcc-cHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 57888999999999999976 899 99999999999999999999999887 568999999999998877777778
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+++..+|+.+|-|++|.|+..+|+.+...+|..++++++.+++..++.+++|.|+.++|..+|++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 7
>KOG0030|consensus
Probab=99.90 E-value=1.7e-22 Score=122.87 Aligned_cols=139 Identities=31% Similarity=0.554 Sum_probs=123.0
Q ss_pred CcCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH--hc----CCCcCHHHHHHHHcccccC
Q psy12589 3 HHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA--EK----GGKLSFPDFLKVMHTHSKA 74 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~----~g~i~~~ef~~~~~~~~~~ 74 (149)
-.+++++..+++++|..+|.. |.| +..+...+||++|.+|+.+++.+.+. .. -.+++|++|+.+++...+.
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki-~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKI-SGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccc-cHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 356788889999999999975 899 99999999999999999999999887 22 3689999999998765543
Q ss_pred C--CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 75 E--DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 75 ~--~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
. ...+.+...++.||++++|.|+..|++++|..+|.++++++++.++... .|.+|.|.|+.|++.+..
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 3 3567889999999999999999999999999999999999999999998 489999999999997753
No 8
>KOG0034|consensus
Probab=99.86 E-value=4.7e-20 Score=120.47 Aligned_cols=140 Identities=25% Similarity=0.456 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHHHHhhccC---CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCC-cCHHHHHHHHcccccCCCCH
Q psy12589 4 HFREQDIDEFRECFFLFARN---GTIKTLDELSVIMRSLGMSPTIAELKKYLA-EKGGK-LSFPDFLKVMHTHSKAEDIP 78 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~---g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~g~-i~~~ef~~~~~~~~~~~~~~ 78 (149)
.++..|+..|..+|..++++ |++ +.++|..+. .+..++-...+...+. .++|. |+|++|+..+..........
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~l-t~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~ 103 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYL-TKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR 103 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCcc-CHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH
Confidence 38899999999999999964 899 999999988 5555665555555554 56666 99999999999988777767
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCC--HHH----HHHHHHhhCCCCCCcccHHHHHHHHhcCCC
Q psy12589 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLS--SKE----VDQIFREANVTMNSKVRYEDFVKIACAPVP 146 (149)
Q Consensus 79 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~--~~~----~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p 146 (149)
++++.||+.||.+++|+|+.+|+.+++..+ |...+ ++. ++.++..+|.++||.|+++||.+.+.+ .|
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~-~P 177 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK-QP 177 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc-Cc
Confidence 799999999999999999999999999986 43444 444 556788899999999999999999877 44
No 9
>KOG0037|consensus
Probab=99.80 E-value=3.9e-18 Score=111.58 Aligned_cols=125 Identities=20% Similarity=0.378 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCC-CHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCCCHHHHH
Q psy12589 10 IDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSP-TIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVV 82 (149)
Q Consensus 10 ~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~-~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 82 (149)
...+...|...|++ |+| +.++|..+|...+... +.+.+..++. +.+|+|++.||..+|... ...+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i-~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr 127 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRI-LAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWR 127 (221)
T ss_pred cHHHHHHHHhhCccccccc-cHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHH
Confidence 34678889999986 899 9999999998766654 4444544444 799999999999999884 4589
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
.+|+.||.|++|.|+..||+++|..+|..++++-.+.+++.++.-++|.|.+++|+.++.
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCV 187 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHH
Confidence 999999999999999999999999999999999999999999977799999999999864
No 10
>KOG0044|consensus
Probab=99.78 E-value=2e-17 Score=108.33 Aligned_cols=139 Identities=19% Similarity=0.336 Sum_probs=114.1
Q ss_pred CcCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHH-HHHHHH----hcCCCcCHHHHHHHHcccccCCCC
Q psy12589 3 HHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAE-LKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI 77 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~-~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~ 77 (149)
..+++.++..+..-|..-.++|.+ +..+|+.+++++........ ...++. +++|.|+|.||+..++...++. .
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~-~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt-~ 98 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRL-TLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT-L 98 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCcc-CHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-H
Confidence 357888888888888887889999 99999999999876444333 333443 7999999999999999877665 4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW----GE-------GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+++..+|+.||.|++|+|+.+|+..++..+ |. ....+.++.+|+.+|.|+||.||+++|+.....
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 7789999999999999999999999998874 31 123556899999999999999999999987653
No 11
>KOG0036|consensus
Probab=99.67 E-value=6.4e-15 Score=104.54 Aligned_cols=133 Identities=17% Similarity=0.305 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHHHHHhhcc--CCCcCCHHHHHHHHHHcCCC-CCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCC
Q psy12589 4 HFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMS-PTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED 76 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~--~g~i~~~~~l~~~l~~~~~~-~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~ 76 (149)
...++...+++..|..+|. +|.+ +..++.+.+..++.+ +...-...+++ +.+|.++|.+|..++...
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~-d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~----- 80 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQV-DLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK----- 80 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCce-eHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----
Confidence 3456666889999999995 3999 999999999999887 55555555555 799999999999999873
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+.++..+|+..|.+.+|.|+.+|+.+.|+.+|.++++++++.++..+|.++++.|++++|...+..
T Consensus 81 -E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 81 -ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred -HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 457899999999999999999999999999999999999999999999999999999999988765
No 12
>KOG0038|consensus
Probab=99.64 E-value=5.5e-15 Score=91.09 Aligned_cols=141 Identities=25% Similarity=0.398 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHhhccC-------C------CcCCHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCCcCHHHHHHHHcc
Q psy12589 5 FREQDIDEFRECFFLFARN-------G------TIKTLDELSVIMRSLGMSPTIAELKKYLA-EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~-------g------~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~g~i~~~ef~~~~~~ 70 (149)
++..++-++...|+.+.++ | .+ + -++..-+..+.-++....+...++ ++.|.++|++|+.+++.
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~v-p-~e~i~kMPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV 99 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKV-P-FELIEKMPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSV 99 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceee-c-HHHHhhChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHH
Confidence 5677888888888887653 1 23 3 334444667777787888878777 89999999999999988
Q ss_pred cccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHH----HHHHHhhCCCCCCcccHHHHHHHHhcCC
Q psy12589 71 HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEV----DQIFREANVTMNSKVRYEDFVKIACAPV 145 (149)
Q Consensus 71 ~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~----~~~~~~~~~~~~g~i~~~eF~~~l~~~~ 145 (149)
.....+-.-++..+|+.||-|++++|...++.+.+..+- ..++++++ +.++.++|.|+||++++.+|..++.+ .
T Consensus 100 ~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r-a 178 (189)
T KOG0038|consen 100 FSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR-A 178 (189)
T ss_pred HHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-C
Confidence 776555455678899999999999999999999999874 45888875 45677789999999999999888776 7
Q ss_pred CCC
Q psy12589 146 PDY 148 (149)
Q Consensus 146 p~~ 148 (149)
|+|
T Consensus 179 PDF 181 (189)
T KOG0038|consen 179 PDF 181 (189)
T ss_pred cch
Confidence 775
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.56 E-value=2.1e-14 Score=83.42 Aligned_cols=65 Identities=17% Similarity=0.337 Sum_probs=60.5
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 79 KEVVDAFKAADT-TKSGTVPAKYLKHVLVN-WGEGLSS-KEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 79 ~~~~~~f~~~D~-~~~g~I~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..+..+|+.||+ +++|+|+..||+.++.. +|..++. ++++.+++.+|.|++|.|+|++|+.+|..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 457899999999 99999999999999999 8888888 99999999999999999999999998764
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=8.4e-14 Score=76.97 Aligned_cols=62 Identities=27% Similarity=0.571 Sum_probs=54.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
+++.+|+.+|.+++|+|+.+||..++..++...+++. ++.+++.+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3788999999999999999999999999997665544 5555999999999999999999874
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.48 E-value=3.9e-13 Score=78.17 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=59.9
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 79 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 79 ~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..+..+|+.|| ++|+| .|+.+||+.+|+. +|...++++++.+++.+|.|++|.|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35789999998 79999 6999999999999 888889999999999999999999999999998764
No 16
>PLN02964 phosphatidylserine decarboxylase
Probab=99.42 E-value=5.2e-12 Score=96.18 Aligned_cols=116 Identities=24% Similarity=0.357 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcC-CCCCHHH---HHHHHH----hcCCCcCHHHHHHHHcccccCC
Q psy12589 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLG-MSPTIAE---LKKYLA----EKGGKLSFPDFLKVMHTHSKAE 75 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~-~~~~~~~---~~~~~~----~~~g~i~~~ef~~~~~~~~~~~ 75 (149)
.++..|+++++++|..+|++|.- . .+..+++++| ..+++.+ +..+++ +++|.|+++||+.++.... ..
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG-~--iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-~~ 211 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSN-K--VVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG-NL 211 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCC-c--CHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-cC
Confidence 57788999999999999988532 1 2888899999 5888876 677766 6889999999999998643 33
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------------hCCCCCH-HHHHHHHHh
Q psy12589 76 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-------------WGEGLSS-KEVDQIFRE 123 (149)
Q Consensus 76 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~-------------~~~~~~~-~~~~~~~~~ 123 (149)
...+++..+|+.+|+|++|+|+.+||++++.. +|.+++. ++++.++..
T Consensus 212 ~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 212 VAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 45778999999999999999999999999998 5666665 556666533
No 17
>KOG0377|consensus
Probab=99.42 E-value=3.2e-12 Score=91.89 Aligned_cols=131 Identities=16% Similarity=0.302 Sum_probs=105.4
Q ss_pred HHHHHHHHhhccC--CCcCCHHHHHHHHHH-cCCCCCHHHHHHHHH--hcCCCcCHHHHHHHHcccccCCC---------
Q psy12589 11 DEFRECFFLFARN--GTIKTLDELSVIMRS-LGMSPTIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAED--------- 76 (149)
Q Consensus 11 ~~l~~~f~~~d~~--g~i~~~~~l~~~l~~-~~~~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~~--------- 76 (149)
..|...|+.+|.. |.| +......++.. +|++++...+..-+. +.+|.|.|.+....+........
T Consensus 464 sdL~~eF~~~D~~ksG~l-sis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKL-SISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hHHHHHHHhcChhhcCee-eHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 4667889999964 999 99999999876 577777766655444 67889999998887654321111
Q ss_pred --CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 77 --IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG----EGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 77 --~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
....+..+|+..|.|++|.|+.+||+++++.++ ..++++++.++.+.+|.|+||.|+++||++...
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 123477899999999999999999999999764 568899999999999999999999999998754
No 18
>KOG0044|consensus
Probab=99.40 E-value=4.7e-12 Score=83.20 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHH-----hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHH
Q psy12589 28 TLDELSVIMRSLGMSPTIAELKKYLA-----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 102 (149)
Q Consensus 28 ~~~~l~~~l~~~~~~~~~~~~~~~~~-----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~ 102 (149)
....+..+.+.. ..+..+++...+ ..+|.++.++|..++....+..+...-...+|+.+|.+++|.|+..||.
T Consensus 10 ~~~~~e~l~~~t--~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi 87 (193)
T KOG0044|consen 10 QPESLEQLVQQT--KFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFI 87 (193)
T ss_pred CcHHHHHHHHhc--CCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 344444444433 456788888776 4789999999999999988766666677899999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 103 HVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+|..+..+..++.+...|+.+|.|++|.|++.+++.++..
T Consensus 88 ~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 88 CALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred HHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 99999887788889999999999999999999999998753
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.40 E-value=2.9e-12 Score=74.51 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=57.8
Q ss_pred HHHHHHHhhcC-CC-CCcccHHHHHHHHH---HhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 80 EVVDAFKAADT-TK-SGTVPAKYLKHVLV---NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 80 ~~~~~f~~~D~-~~-~g~I~~~e~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+..+|..||. +| +|+|+.+||++++. .+|.++++++++.+++.+|.|++|.|+|++|+.++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 46778999997 67 89999999999997 3688999999999999999999999999999998764
No 20
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.38 E-value=3.8e-12 Score=75.16 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=58.4
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 79 KEVVDAFKAADT-TK-SGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 79 ~~~~~~f~~~D~-~~-~g~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..+..+|..||. ++ +|.|+.+|++.++.. +|...+.++++.+++.++.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 468899999997 87 699999999999986 466789999999999999999999999999988764
No 21
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.36 E-value=6.4e-12 Score=73.95 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=56.0
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 79 KEVVDAFKAAD-TTKSG-TVPAKYLKHVLVNW-----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 79 ~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..+..+|+.|| +|++| .|+.+||+.++... +...++.+++.+++.+|.|++|.|+|++|+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 35778899999 78998 59999999999762 33457789999999999999999999999998764
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.35 E-value=7.8e-12 Score=73.56 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 78 PKEVVDAFKAAD-TTKSG-TVPAKYLKHVLVN-WG----EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 78 ~~~~~~~f~~~D-~~~~g-~I~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+.++.+|..|| .+++| .|+..|++.+|+. +| ...++++++.+++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 356889999997 99999 5999999999985 54 3468899999999999999999999999998764
No 23
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.31 E-value=1.1e-11 Score=65.72 Aligned_cols=52 Identities=25% Similarity=0.520 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 92 KSGTVPAKYLKHVLVNWGEG-LSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+|.|+.++|+.+|..+|.+ ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999998864
No 24
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.31 E-value=1.3e-11 Score=68.16 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=54.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 82 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 82 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
+.+|..+|++++|.|+.+|+..++...| .+.+++..++..++.+++|.|++.+|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 5689999999999999999999999987 5888999999999999999999999998775
No 25
>KOG0027|consensus
Probab=99.30 E-value=2.2e-11 Score=78.07 Aligned_cols=67 Identities=19% Similarity=0.387 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP 144 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~ 144 (149)
...++.+|..||++++|+|+..++..+++.+|...+..++..++..++.+++|.|++.+|+.++...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 4568999999999999999999999999999999999999999999999999999999999998753
No 26
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=3e-11 Score=71.58 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
...+..+|..+|.+++|.|+.++++.++...| ++.++++.++..++.+++|.|++++|+.++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 45689999999999999999999999999976 7889999999999999999999999998775
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.27 E-value=3e-11 Score=70.44 Aligned_cols=66 Identities=23% Similarity=0.400 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 78 PKEVVDAFKAADT--TKSGTVPAKYLKHVLVN-WGEGL----SSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 78 ~~~~~~~f~~~D~--~~~g~I~~~e~~~~l~~-~~~~~----~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+.++.+|..+|+ +++|.|+.+++..+++. +|.++ +.++++.++..++.+++|.|+|++|+.++..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3468889999999 89999999999999986 55444 5899999999999999999999999998764
No 28
>KOG4223|consensus
Probab=99.27 E-value=1.8e-11 Score=84.87 Aligned_cols=131 Identities=20% Similarity=0.311 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCC-CC----HHHHHHHHHhcCCCcCHHHHHHHHcccccCCCCHH-
Q psy12589 8 QDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMS-PT----IAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPK- 79 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~-~~----~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~- 79 (149)
..+.+-+..|+..|.+ |.+ +.++|.++|.--..+ +. .+.+..+.++++|.|+++||+.-+.........++
T Consensus 160 km~~rDe~rFk~AD~d~dg~l-t~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeW 238 (325)
T KOG4223|consen 160 KMIARDEERFKAADQDGDGSL-TLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEW 238 (325)
T ss_pred HHHHHHHHHHhhcccCCCCcc-cHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccc
Confidence 3456667889998865 789 999999988533221 12 23334444489999999999998776654333332
Q ss_pred ---HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy12589 80 ---EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139 (149)
Q Consensus 80 ---~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~ 139 (149)
+-...+...|+|++|+++.+|+++.+..-+......++..++...|.|+||++|+++.+.
T Consensus 239 v~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 239 VLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 234567778999999999999999887777777788999999999999999999999775
No 29
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.24 E-value=7.8e-11 Score=63.57 Aligned_cols=61 Identities=34% Similarity=0.632 Sum_probs=57.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
+..+|..+|.+++|.|+.+++..++...+.+.+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998875
No 30
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.23 E-value=1e-10 Score=68.16 Aligned_cols=65 Identities=6% Similarity=0.259 Sum_probs=56.5
Q ss_pred HHHHHHHHh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 79 KEVVDAFKA-ADTTKSG-TVPAKYLKHVLVNW-----GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 79 ~~~~~~f~~-~D~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..+..+|+. +|.+|+| .|+.+||+.++... +...++.+++.+++.+|.|+||.|+|++|+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 457889999 6788876 99999999999875 34567889999999999999999999999998764
No 31
>KOG0037|consensus
Probab=99.16 E-value=3.7e-10 Score=74.49 Aligned_cols=87 Identities=24% Similarity=0.478 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH---h-cCCCcCHHHHHHHHcccccCCCCHHHHHH
Q psy12589 10 IDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA---E-KGGKLSFPDFLKVMHTHSKAEDIPKEVVD 83 (149)
Q Consensus 10 ~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~---~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 83 (149)
+..++.+|+.||+| |.| +..||+.+|.++|+.++.+..+.+++ + .+|.|.|++|++.+..+. .+-.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I-~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~-------~lt~ 194 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTI-DSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ-------RLTE 194 (221)
T ss_pred HHHHHHHHHhcccCCCCcc-cHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH-------HHHH
Confidence 56778889999876 889 99999999999999999988888887 2 378899999999887743 4678
Q ss_pred HHHhhcCCCCCcc--cHHHHHHH
Q psy12589 84 AFKAADTTKSGTV--PAKYLKHV 104 (149)
Q Consensus 84 ~f~~~D~~~~g~I--~~~e~~~~ 104 (149)
+|+.+|++..|.| +.++|.++
T Consensus 195 ~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 195 AFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHHHhccccceeEEEeHHHHHHH
Confidence 8999998888864 44555443
No 32
>PTZ00183 centrin; Provisional
Probab=99.16 E-value=2.1e-09 Score=69.05 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=75.3
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcc
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKV 132 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~i 132 (149)
+++|.|++.+|..++...... .....+..+|..+|.+++|.|+.++|..++... ......+.+..+|+.+|.+++|.|
T Consensus 29 ~~~G~i~~~e~~~~l~~~g~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i 107 (158)
T PTZ00183 29 DGSGTIDPKELKVAMRSLGFE-PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKI 107 (158)
T ss_pred CCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcC
Confidence 789999999999998754322 235678999999999999999999999988764 344567789999999999999999
Q ss_pred cHHHHHHHHhc
Q psy12589 133 RYEDFVKIACA 143 (149)
Q Consensus 133 ~~~eF~~~l~~ 143 (149)
+..+|..++..
T Consensus 108 ~~~e~~~~l~~ 118 (158)
T PTZ00183 108 SLKNLKRVAKE 118 (158)
T ss_pred cHHHHHHHHHH
Confidence 99999998864
No 33
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.16 E-value=2e-09 Score=68.68 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHH-------hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCC
Q psy12589 42 SPTIAELKKYLA-------EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLS 113 (149)
Q Consensus 42 ~~~~~~~~~~~~-------~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~ 113 (149)
.++..+++.+-+ +++|.|+..++..+++. .........+..+|..+|. ++|.|+..+|..+|.... ..-+
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCc
Confidence 345555544433 68999999999999984 4444457789999999999 999999999999998754 5566
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 114 SKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+++...|+.+|.|++|.|+..++...|..
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 899999999999999999999999998874
No 34
>KOG4223|consensus
Probab=99.12 E-value=5.4e-10 Score=77.65 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=95.9
Q ss_pred HHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHH----HhcCCCcCHHHHHHHHccccc------CCCCH
Q psy12589 11 DEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL----AEKGGKLSFPDFLKVMHTHSK------AEDIP 78 (149)
Q Consensus 11 ~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~----~~~~g~i~~~ef~~~~~~~~~------~~~~~ 78 (149)
+++..++..+|.+ |.| +..+++..+.+.--.....+..+-+ ++++|.|+|+++....-.... .....
T Consensus 77 ~rl~~l~~~iD~~~Dgfv-~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~ 155 (325)
T KOG4223|consen 77 ERLGKLVPKIDSDSDGFV-TESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDN 155 (325)
T ss_pred HHHHHHHhhhcCCCCCce-eHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhc
Confidence 7788888899853 999 9999998775432222222222222 379999999999988664321 11111
Q ss_pred H-------HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCC
Q psy12589 79 K-------EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG-LSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV 145 (149)
Q Consensus 79 ~-------~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~ 145 (149)
. +=+.-|+.-|.|++|.+|++||...|+.-..+ +.+-.+.+-+...|.|+||.|++++|+.-|....
T Consensus 156 ~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 156 EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 1 12456999999999999999999999765433 3344577778889999999999999999887654
No 35
>PF14658 EF-hand_9: EF-hand domain
Probab=99.12 E-value=4.5e-10 Score=60.80 Aligned_cols=61 Identities=26% Similarity=0.357 Sum_probs=57.1
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHhc
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMN-SKVRYEDFVKIACA 143 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-g~i~~~eF~~~l~~ 143 (149)
.+|.+||+++.|.|...+++..|+.++. ..++.+++.+.+.+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3799999999999999999999999987 7888999999999999987 99999999999875
No 36
>PTZ00184 calmodulin; Provisional
Probab=99.10 E-value=5.2e-09 Score=66.46 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=74.4
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCcc
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREANVTMNSKV 132 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~g~i 132 (149)
+++|.|++.+|..++...... ...+.+..+|+.+|.+++|.|+.++|..++.... .....+.+..+|..+|.+++|.|
T Consensus 23 ~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i 101 (149)
T PTZ00184 23 DGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFI 101 (149)
T ss_pred CCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeE
Confidence 789999999999988654322 2356789999999999999999999999988653 33456678999999999999999
Q ss_pred cHHHHHHHHhc
Q psy12589 133 RYEDFVKIACA 143 (149)
Q Consensus 133 ~~~eF~~~l~~ 143 (149)
+..+|..++..
T Consensus 102 ~~~e~~~~l~~ 112 (149)
T PTZ00184 102 SAAELRHVMTN 112 (149)
T ss_pred eHHHHHHHHHH
Confidence 99999988754
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.09 E-value=8.3e-10 Score=67.26 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
...+..+|..+|.|++|.|+.+|+..+. + ...+..+..++..+|.|++|.||++||..++..
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 4568999999999999999999999876 2 245677899999999999999999999999843
No 38
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.05 E-value=1.1e-09 Score=63.79 Aligned_cols=65 Identities=17% Similarity=0.396 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 79 KEVVDAFKAADTT--KSGTVPAKYLKHVLV-NWGEGLS----SKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 79 ~~~~~~f~~~D~~--~~g~I~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..+...|..|+.. .+|.|+.+||+.++. .+|..++ +++++.+++.+|.+++|.|+|++|+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3467789999855 479999999999997 5665566 899999999999999999999999998764
No 39
>KOG0040|consensus
Probab=99.03 E-value=1e-08 Score=83.13 Aligned_cols=130 Identities=22% Similarity=0.372 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCC-------HHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPT-------IAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~-------~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
..|++++.++.-+|+.||++ |.+ +..+|+.+|+++|++++ +++++.++. +.+|.|+..+|+.++-.
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~L-dhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRL-DHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCC-cHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 57899999999999999975 999 99999999999998762 236777776 68899999999999765
Q ss_pred cc-cCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC----C----CCCCcccHHHHHHHH
Q psy12589 71 HS-KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN----V----TMNSKVRYEDFVKIA 141 (149)
Q Consensus 71 ~~-~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~----~----~~~g~i~~~eF~~~l 141 (149)
.- .+-...+++..+|+.+|. +..+|+++++.+. +|+++++.++..+. . ...+.++|.+|++.+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 33 233345689999999999 8899999998754 57788888877752 2 223569999999876
Q ss_pred h
Q psy12589 142 C 142 (149)
Q Consensus 142 ~ 142 (149)
.
T Consensus 2397 ~ 2397 (2399)
T KOG0040|consen 2397 F 2397 (2399)
T ss_pred h
Confidence 4
No 40
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.01 E-value=2.3e-09 Score=62.30 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhcc-C--CCcCCHHHHHHHHHH-cCCCCCH-HHHHHHHH----hcCCCcCHHHHHHHHccc
Q psy12589 7 EQDIDEFRECFFLFAR-N--GTIKTLDELSVIMRS-LGMSPTI-AELKKYLA----EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~-~--g~i~~~~~l~~~l~~-~~~~~~~-~~~~~~~~----~~~g~i~~~ef~~~~~~~ 71 (149)
+.-+..+..+|+.||+ + |.| +..+|+.++++ +|-.++. .++..+++ +++|.|+|+||+.++...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i-~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESL-TASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeE-CHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3456889999999998 5 899 99999999998 8866777 78888886 789999999999887664
No 41
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.97 E-value=6.1e-09 Score=60.55 Aligned_cols=62 Identities=15% Similarity=0.338 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhc-cC--C-CcCCHHHHHHHHHH-----cCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 8 QDIDEFRECFFLFA-RN--G-TIKTLDELSVIMRS-----LGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 8 ~~~~~l~~~f~~~d-~~--g-~i~~~~~l~~~l~~-----~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
.-+..+..+|+.|| ++ | .| +..+|+.+|+. +|..+++.++..+++ +++|+|+|.+|+.++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I-~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKL-KKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEE-CHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45688999999997 44 7 59 99999999999 898899999999887 68899999999988765
No 42
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.96 E-value=1.1e-09 Score=60.26 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=47.3
Q ss_pred HHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhc
Q psy12589 12 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD 89 (149)
Q Consensus 12 ~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 89 (149)
+++.+|+.+|.+ |+| +..+|..+++.++...+...+ .+.+..+|+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i-~~~el~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~D 50 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYI-SKEELRRALKHLGRDMSDEES-----------------------------DEMIDQIFREFD 50 (66)
T ss_dssp HHHHHHHHHSTTSSSEE-EHHHHHHHHHHTTSHSTHHHH-----------------------------HHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCccCCC-CHHHHHHHHHHhcccccHHHH-----------------------------HHHHHHHHHHhC
Confidence 478899999975 899 999999999988876652211 224566777778
Q ss_pred CCCCCcccHHHHHHHH
Q psy12589 90 TTKSGTVPAKYLKHVL 105 (149)
Q Consensus 90 ~~~~g~I~~~e~~~~l 105 (149)
++++|.|+.+||..++
T Consensus 51 ~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 51 TDGDGRISFDEFLNFM 66 (66)
T ss_dssp TTSSSSEEHHHHHHHH
T ss_pred CCCcCCCcHHHHhccC
Confidence 8888888887777653
No 43
>KOG0028|consensus
Probab=98.96 E-value=2.3e-08 Score=63.03 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=77.2
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCcc
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKV 132 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~g~i 132 (149)
+..|.|++.++...+..+--.. ..+++.++..-+|+++.|.|+.++|+.++.. +|..-+.+++...|+.+|.|++|.|
T Consensus 45 ~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gki 123 (172)
T KOG0028|consen 45 DMAGKIDVEELKVAMRALGFEP-KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKI 123 (172)
T ss_pred CCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCc
Confidence 7899999999955555533222 3567889999999999999999999999775 5777799999999999999999999
Q ss_pred cHHHHHHHHhcCCC
Q psy12589 133 RYEDFVKIACAPVP 146 (149)
Q Consensus 133 ~~~eF~~~l~~~~p 146 (149)
|..+|...+...-|
T Consensus 124 s~~~lkrvakeLge 137 (172)
T KOG0028|consen 124 SQRNLKRVAKELGE 137 (172)
T ss_pred CHHHHHHHHHHhCc
Confidence 99999988776444
No 44
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.94 E-value=8.9e-09 Score=60.97 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
.+|++++..++.+|..+|++ |.| +..+++.+++..| ++..++..++. +++|.|+|++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~I-s~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTV-TGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeE-eHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 47889999999999999975 899 9999999999866 46677777776 56788888888887654
No 45
>KOG0041|consensus
Probab=98.94 E-value=3.3e-09 Score=69.14 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 79 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
..+..+|+.||.+.+|+|+..|++.+|..+|.+-|.=-+..+++..|.|.+|+|||.+|+=+..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4578899999999999999999999999999887877789999999999999999999986543
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=98.91 E-value=2.2e-08 Score=76.79 Aligned_cols=86 Identities=9% Similarity=0.252 Sum_probs=69.5
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHH---HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKE---VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS 130 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~---~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 130 (149)
+++|.+ +......+.. ..+ ..++ +..+|..+|.+++|.|+.+||..++..++...+++++..+|+.+|.|++|
T Consensus 155 dgdG~i-Lg~ilrslG~--~~p-te~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG 230 (644)
T PLN02964 155 SSSNKV-VGSIFVSCSI--EDP-VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDG 230 (644)
T ss_pred CCCCcC-HHHHHHHhCC--CCC-CHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCC
Confidence 677776 4443333321 122 2333 78999999999999999999999999998888999999999999999999
Q ss_pred cccHHHHHHHHhc
Q psy12589 131 KVRYEDFVKIACA 143 (149)
Q Consensus 131 ~i~~~eF~~~l~~ 143 (149)
.|++++|..+|..
T Consensus 231 ~Is~dEL~~vL~~ 243 (644)
T PLN02964 231 VVTIDELAALLAL 243 (644)
T ss_pred cCCHHHHHHHHHh
Confidence 9999999998876
No 47
>KOG2643|consensus
Probab=98.88 E-value=1.9e-08 Score=72.68 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=96.7
Q ss_pred HHHHHHHHHhhccC--CCcCCHHHHHHHHHHc-CCCCCHH--HHHHHHH---hcCCCcCHHHHHHHHcccccCCCCHHHH
Q psy12589 10 IDEFRECFFLFARN--GTIKTLDELSVIMRSL-GMSPTIA--ELKKYLA---EKGGKLSFPDFLKVMHTHSKAEDIPKEV 81 (149)
Q Consensus 10 ~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~-~~~~~~~--~~~~~~~---~~~g~i~~~ef~~~~~~~~~~~~~~~~~ 81 (149)
.+-++.-|..+|+. |.| +..+|+..|-.. +.+.... .++++-+ +.+..|+++||..++..... .+.+
T Consensus 317 ~Eil~lEF~~~~~~~~g~I-se~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~----l~df 391 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAI-SEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNN----LNDF 391 (489)
T ss_pred HHHHHHHHHHhCccccccc-CHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhh----hhHH
Confidence 34455668888864 899 999999977554 3333222 2333333 33557999999999887654 3346
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 82 VDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 82 ~~~f~~~D~~~~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..|...|-. ..+.|+..+|+++-.. .|.++++..++-+|..+|.|+||.++++||+..|.+
T Consensus 392 d~Al~fy~~-Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 392 DIALRFYHM-AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 667666643 4689999999999886 588999889999999999999999999999999875
No 48
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.82 E-value=4.8e-08 Score=56.81 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhcc-C---CCcCCHHHHHHHHH---HcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHccc
Q psy12589 7 EQDIDEFRECFFLFAR-N---GTIKTLDELSVIMR---SLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~-~---g~i~~~~~l~~~l~---~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~ 71 (149)
++.+..+-.+|..||. + |+| +..+|+.+++ .+|..++.+++..+++ +++|+|+|.+|+.++...
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~I-s~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTL-SKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEE-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3556788899999996 3 699 9999999996 3688899999999987 688999999999887653
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.80 E-value=4e-08 Score=57.17 Aligned_cols=64 Identities=22% Similarity=0.405 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhcc--C--CCcCCHHHHHHHHHH-cCCCC----CHHHHHHHHH----hcCCCcCHHHHHHHHccc
Q psy12589 7 EQDIDEFRECFFLFAR--N--GTIKTLDELSVIMRS-LGMSP----TIAELKKYLA----EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~--~--g~i~~~~~l~~~l~~-~~~~~----~~~~~~~~~~----~~~g~i~~~ef~~~~~~~ 71 (149)
+++++.++.+|..+|+ + |.| +..+|..+++. +|..+ +..++..++. +++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~I-s~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTL-SKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcC-cHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4678889999999998 5 899 99999999976 55443 4788888886 577899999999987764
No 50
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.79 E-value=1.3e-08 Score=46.51 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~ 107 (149)
++.+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 577888888888888888888888765
No 51
>KOG0031|consensus
Probab=98.78 E-value=4.9e-08 Score=61.21 Aligned_cols=60 Identities=23% Similarity=0.447 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
..+++.||...|.|++|.|.+++++.++.++|...++++++.++++. .|.|+|.-|+.++
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmf 90 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMF 90 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHH
Confidence 34789999999999999999999999999999989999988888775 3457776666653
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.74 E-value=9.3e-08 Score=56.14 Aligned_cols=62 Identities=13% Similarity=0.356 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhc-cC--CC-cCCHHHHHHHHHH-cC----CCCCHHHHHHHHH----hcCCCcCHHHHHHHHccc
Q psy12589 9 DIDEFRECFFLFA-RN--GT-IKTLDELSVIMRS-LG----MSPTIAELKKYLA----EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 9 ~~~~l~~~f~~~d-~~--g~-i~~~~~l~~~l~~-~~----~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~ 71 (149)
-+..+.++|+.+| ++ |+ | +..+|+.+|+. +| ..++.+++..+++ +++|.|+|.+|+.++..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~I-s~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKL-SKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeE-CHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3478999999997 65 84 9 99999999985 44 3567888888887 578899999999887763
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.71 E-value=2.2e-07 Score=53.81 Aligned_cols=63 Identities=13% Similarity=0.259 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+..+|..|.. +.+.+++.||+.++.. ++...+++.++.+++..|.|+||.|+|.||+.++..
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46678988874 4679999999999975 244567889999999999999999999999998753
No 54
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.69 E-value=1.5e-07 Score=55.47 Aligned_cols=61 Identities=20% Similarity=0.405 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhcc---C-CCcCCHHHHHHHHHH-----cCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 9 DIDEFRECFFLFAR---N-GTIKTLDELSVIMRS-----LGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 9 ~~~~l~~~f~~~d~---~-g~i~~~~~l~~~l~~-----~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
-...+..+|..+|. + |.| +..+|+.+++. +|..++.+++..+++ +++|.|+|.+|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~I-s~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTL-SRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeE-CHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35678899999975 3 789 99999999986 466778888888776 57788888888877654
No 55
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.69 E-value=3.8e-08 Score=45.81 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLV-NWG 109 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~-~~~ 109 (149)
+++.+|+.+|.+++|+|+.+||.++|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468899999999999999999999998 565
No 56
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.67 E-value=5.7e-08 Score=51.22 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy12589 56 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV 106 (149)
Q Consensus 56 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~ 106 (149)
+|.|+.++|..++...-...-..+++..+|..+|.+++|.|+.+||..++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 456666666666633211102344566666666666666666666666654
No 57
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.65 E-value=2.8e-07 Score=54.21 Aligned_cols=63 Identities=14% Similarity=0.327 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhc-cC--C-CcCCHHHHHHHHHH-c----CCCCCHHHHHHHHH----hcCCCcCHHHHHHHHccc
Q psy12589 8 QDIDEFRECFFLFA-RN--G-TIKTLDELSVIMRS-L----GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 8 ~~~~~l~~~f~~~d-~~--g-~i~~~~~l~~~l~~-~----~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~ 71 (149)
.-+..+..+|+.|| ++ | .| +..+|+.+++. + +...+..++..+++ +++|.|+|.||+.++...
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~I-s~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKL-SKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEE-CHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 44578889999998 43 6 49 99999999976 3 33446677777776 678899999999987764
No 58
>KOG0034|consensus
Probab=98.63 E-value=1e-06 Score=58.12 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=77.2
Q ss_pred CCHHHHHHHHH-------h-cCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHHhCCCCC
Q psy12589 43 PTIAELKKYLA-------E-KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT-VPAKYLKHVLVNWGEGLS 113 (149)
Q Consensus 43 ~~~~~~~~~~~-------~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~-I~~~e~~~~l~~~~~~~~ 113 (149)
++..++..+.. + +.|.++.+||..+....... -...++..++.+++|. |+.++|.+.+..+..+-+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np-----~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP-----LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc-----HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 44555555443 4 78999999999998443321 2577899999999998 999999999999876666
Q ss_pred HH-HHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 114 SK-EVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 114 ~~-~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+ .+.-.++.+|.+++|.|+.+++..++..
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 55 7899999999999999999999988764
No 59
>KOG0030|consensus
Probab=98.59 E-value=2.8e-07 Score=56.91 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=58.7
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHh
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT--MNSKVRYEDFVKIAC 142 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~g~i~~~eF~~~l~ 142 (149)
...+++.+|..||..++|.|+..+..++|+.+|.+.++.++...+..+..+ +--+|+|++|+.++.
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHH
Confidence 347899999999999999999999999999999999999999999998766 346799999988765
No 60
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.59 E-value=2.5e-07 Score=50.77 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=41.5
Q ss_pred HHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 14 RECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 14 ~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
+.+|..+|++ |.| +..++..+++.+|. +..++..+++ +++|.|+|.+|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i-~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLI-SGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcC-cHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4678888865 888 89999998888775 6666777766 56788888888887665
No 61
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.55 E-value=7.8e-07 Score=53.18 Aligned_cols=62 Identities=18% Similarity=0.376 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
....+..+|...++ ++|.|+.++.+.++...| ++.+.+..++...|.+++|.++++||+-.|
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 35678899999986 689999999999999887 899999999999999999999999998865
No 62
>KOG2562|consensus
Probab=98.53 E-value=2.4e-06 Score=62.46 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH--------hcCCCcCHHHHHHHHcccccCCC
Q psy12589 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA--------EKGGKLSFPDFLKVMHTHSKAED 76 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~--------~~~g~i~~~ef~~~~~~~~~~~~ 76 (149)
.+....+...|-.+|++ |.| +.++|+..=- -.++.--+++++. ..+|+++|++|+-++-... ..+
T Consensus 274 ~e~f~viy~kFweLD~Dhd~li-dk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~k~ 348 (493)
T KOG2562|consen 274 YEHFYVIYCKFWELDTDHDGLI-DKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-DKD 348 (493)
T ss_pred HHHHHHHHHHHhhhcccccccc-CHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-cCC
Confidence 33333444446667765 899 9999877532 2345666777776 4889999999999987754 334
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C-CCCC-HHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-------G-EGLS-SKEVDQIFREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-------~-~~~~-~~~~~~~~~~~~~~~~g~i~~~eF~~~ 140 (149)
....+...|+.+|-+++|.|+..|++-..... | ..++ ++.+.+++..+.....++|+.++|...
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 46679999999999999999999998776542 2 2222 455677777777777889999999873
No 63
>KOG0041|consensus
Probab=98.51 E-value=1.4e-06 Score=57.14 Aligned_cols=103 Identities=26% Similarity=0.393 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHhhcc--CCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCC-
Q psy12589 4 HFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAED- 76 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~--~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~- 76 (149)
.+|..++..+..+|+.||. +|+| +..+|+..|..+|.+-+---++.+++ +.+|+|+|.+|+.++.....+.-
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfI-dl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFI-DLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccc-cHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 4788999999999999996 4999 99999999999998766544455444 89999999999999877554321
Q ss_pred CHHHHHHHHH--hhcCCCCCcccHHHHHHHHHH
Q psy12589 77 IPKEVVDAFK--AADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 77 ~~~~~~~~f~--~~D~~~~g~I~~~e~~~~l~~ 107 (149)
....+...-+ ..|-..-|+.....|.++=-.
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI~ 203 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKIE 203 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHHHHH
Confidence 1223333333 367777888888888766433
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.50 E-value=7.3e-07 Score=47.60 Aligned_cols=55 Identities=38% Similarity=0.733 Sum_probs=39.5
Q ss_pred HHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHH
Q psy12589 13 FRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVM 68 (149)
Q Consensus 13 l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~ 68 (149)
+..+|..+|.+ |.| +..++..+++.++...+.+.+..++. +++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l-~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTI-SADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcC-cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45677777764 778 88888888888777777777666665 456677777776654
No 65
>KOG0751|consensus
Probab=98.50 E-value=5.7e-06 Score=61.17 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhh---ccCC--CcCCHHHHHHH-HHHcCCCCCHHHHHHHHH-----hcCCCcCHHHHHHHHcccccCCCC
Q psy12589 9 DIDEFRECFFLF---ARNG--TIKTLDELSVI-MRSLGMSPTIAELKKYLA-----EKGGKLSFPDFLKVMHTHSKAEDI 77 (149)
Q Consensus 9 ~~~~l~~~f~~~---d~~g--~i~~~~~l~~~-l~~~~~~~~~~~~~~~~~-----~~~g~i~~~ef~~~~~~~~~~~~~ 77 (149)
+-.+|+.+|-.| +.+| .+ +.++|.+. +.-++.+-..+++.+++. .++|.|+|.||+.+-..++. +
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~m-t~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~---p 106 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYM-TPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA---P 106 (694)
T ss_pred ChHHHHHHHHHHhHHhhcccccc-CHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC---c
Confidence 345556666555 4554 67 78888764 344455545566666665 58899999999988655443 2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC------CC-----------------------------HHHHHHHHH
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG------LS-----------------------------SKEVDQIFR 122 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~------~~-----------------------------~~~~~~~~~ 122 (149)
......+|+.||+.++|.+|.+++++++...... .+ .+...+.++
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999865311 11 122344455
Q ss_pred hhCCCCCCcccHHHHHHHHhc
Q psy12589 123 EANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 123 ~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+.+..++|.|+--+|..+|..
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HhcccCCCeeeeechHhhhhh
Confidence 557777887777777666544
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.46 E-value=2.8e-07 Score=42.06 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 116 EVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 116 ~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+++.+|+.+|.|++|.|+++||..+|.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4789999999999999999999999864
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.40 E-value=2.2e-06 Score=49.88 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhcc----CCCcCCHHHHHHHHH-HcCCCCC----HHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 7 EQDIDEFRECFFLFAR----NGTIKTLDELSVIMR-SLGMSPT----IAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d~----~g~i~~~~~l~~~l~-~~~~~~~----~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
+.-+..+-.+|+.|+. +|.| +..+|+.++. .+|..++ ..++..++. +++|.|+|++|+.++..
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~I-s~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTL-YKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccC-CHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3456788899999983 2689 9999999996 4554454 667777776 46777888888777654
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.33 E-value=2.8e-06 Score=62.16 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
...++.+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|++++|...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45678899999999999999999942 578999999999999999999998754
No 69
>PF14658 EF-hand_9: EF-hand domain
Probab=98.31 E-value=1.9e-06 Score=46.72 Aligned_cols=54 Identities=28% Similarity=0.544 Sum_probs=45.8
Q ss_pred HHHhhccC--CCcCCHHHHHHHHHHcCC-CCCHHHHHHHHH----hc-CCCcCHHHHHHHHcc
Q psy12589 16 CFFLFARN--GTIKTLDELSVIMRSLGM-SPTIAELKKYLA----EK-GGKLSFPDFLKVMHT 70 (149)
Q Consensus 16 ~f~~~d~~--g~i~~~~~l~~~l~~~~~-~~~~~~~~~~~~----~~-~g~i~~~ef~~~~~~ 70 (149)
+|..+|++ |.| ...++..+|++++. .+.+.+++.+.+ ++ +|.|+++.|+..++.
T Consensus 3 ~F~~fD~~~tG~V-~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRV-PVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceE-eHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 68899975 999 99999999999988 888888988887 33 478999999988765
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.27 E-value=1.6e-06 Score=38.12 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHH
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHV 104 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~ 104 (149)
++.+|+.+|.|++|.|+.+|+.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356788888888888888888765
No 71
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.27 E-value=1.1e-05 Score=47.01 Aligned_cols=63 Identities=17% Similarity=0.367 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhh-ccC--C-CcCCHHHHHHHHHHc-----CCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 7 EQDIDEFRECFFLF-ARN--G-TIKTLDELSVIMRSL-----GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 7 ~~~~~~l~~~f~~~-d~~--g-~i~~~~~l~~~l~~~-----~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
+..+..+..+|+.| |++ | .| +..||+.++... +......++..+++ +++|.|+|+||+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~L-s~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQL-SKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeE-CHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 34567888889885 443 3 78 899999888764 22344566666665 57778888888777655
No 72
>KOG0751|consensus
Probab=98.22 E-value=1.3e-05 Score=59.36 Aligned_cols=122 Identities=18% Similarity=0.302 Sum_probs=89.2
Q ss_pred HHHHHHHhhccC--CCcCCHHHHHHHHHHcCC------CCCHHHHHHHHH-hcCCCcCHHHHHHHHcccccCCCCHHHHH
Q psy12589 12 EFRECFFLFARN--GTIKTLDELSVIMRSLGM------SPTIAELKKYLA-EKGGKLSFPDFLKVMHTHSKAEDIPKEVV 82 (149)
Q Consensus 12 ~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~------~~~~~~~~~~~~-~~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 82 (149)
....+|..+|+. |.+ +.+++..++++..+ +...+-+...+. .....++|.+|.++++... .+...
T Consensus 109 l~~~aFqlFDr~~~~~v-s~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~-----~E~~~ 182 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEV-SFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ-----LEHAE 182 (694)
T ss_pred HHHHHHHHhcccCCCce-ehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH-----HHHHH
Confidence 345788889975 678 89999999987644 233445666555 4556799999999988754 34578
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC-cccHHHHHH
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS-KVRYEDFVK 139 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~eF~~ 139 (149)
.+|+..|+.++|+||.-++.+++-....++....++..+-......++ .+|+..|..
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 899999999999999999999998877666666677766665433333 366665543
No 73
>KOG2643|consensus
Probab=98.20 E-value=1.5e-05 Score=58.08 Aligned_cols=122 Identities=19% Similarity=0.358 Sum_probs=81.5
Q ss_pred HHHHHHHhhccC--CCcCCHHHHHHHHHH------cCC---------CCCHHHHHH-----HHH-hcCCCcCHHHHHHHH
Q psy12589 12 EFRECFFLFARN--GTIKTLDELSVIMRS------LGM---------SPTIAELKK-----YLA-EKGGKLSFPDFLKVM 68 (149)
Q Consensus 12 ~l~~~f~~~d~~--g~i~~~~~l~~~l~~------~~~---------~~~~~~~~~-----~~~-~~~g~i~~~ef~~~~ 68 (149)
.+..+|+.+|.| |.| +.+||..+.+- +|. +.-..+++. ++. ++++++++++|+.++
T Consensus 234 ~F~IAFKMFD~dgnG~I-dkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEI-DKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred cceeeeeeeecCCCCcc-cHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 455678889865 899 99999876531 121 011112222 222 788999999999999
Q ss_pred cccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHH--HHHHHHHhhCCCCCCcccHHHHHHH
Q psy12589 69 HTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSK--EVDQIFREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 69 ~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~g~i~~~eF~~~ 140 (149)
..+. .+-+..-|..+|+..+|.|+..+|..++-... .+.... .+..+-+.+..+ +..||++||..+
T Consensus 313 e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~F 381 (489)
T KOG2643|consen 313 ENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAF 381 (489)
T ss_pred HHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHH
Confidence 8864 34466779999999999999999999987653 222211 244455555443 556999888764
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.11 E-value=4.8e-05 Score=44.17 Aligned_cols=63 Identities=17% Similarity=0.353 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhccC-CCcCCHHHHHHHHHH-c----CCCCCHHHHHHHHH----hcCCCcCHHHHHHHHccc
Q psy12589 8 QDIDEFRECFFLFARN-GTIKTLDELSVIMRS-L----GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~~-g~i~~~~~l~~~l~~-~----~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~ 71 (149)
.-+..+-.+|..|..+ +.+ +..+|+.++.+ + +-.-....+..+++ +++|.|+|.||+.++...
T Consensus 5 ~ai~~lI~~FhkYaG~~~tL-sk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFAGEKNYL-NRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHcCCCCcC-CHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4457778889999865 788 89999988853 2 22234455666665 677788888888777653
No 75
>KOG4666|consensus
Probab=98.10 E-value=3.5e-06 Score=59.20 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=77.5
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCccc
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 133 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 133 (149)
+.+|.++|.+.+..+..........+-++.+|+.|+-+.+|.+...+|.-+|+... ++..=.+..++...+...+|+|+
T Consensus 271 ~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf~~i~q~d~~ki~ 349 (412)
T KOG4666|consen 271 GTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLFPSIEQKDDPKIY 349 (412)
T ss_pred CCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-CcceeeccccchhhhcccCccee
Confidence 78999999999999998887777788899999999999999999999988887642 23433477889999888999999
Q ss_pred HHHHHHHHhcCCCC
Q psy12589 134 YEDFVKIACAPVPD 147 (149)
Q Consensus 134 ~~eF~~~l~~~~p~ 147 (149)
+.+|.+++.. .|.
T Consensus 350 ~~~f~~fa~~-~p~ 362 (412)
T KOG4666|consen 350 ASNFRKFAAT-EPN 362 (412)
T ss_pred HHHHHHHHHh-Cch
Confidence 9999998765 443
No 76
>KOG1029|consensus
Probab=98.09 E-value=6.4e-05 Score=58.48 Aligned_cols=132 Identities=19% Similarity=0.293 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHhhccC-CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHccccc------
Q psy12589 5 FREQDIDEFRECFFLFARN-GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSK------ 73 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~-g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~------ 73 (149)
+|.++..+-...|..+.+. |.| +..+-+.++-+.|++ ...+-.|+. +++|+++..||.-.+.....
T Consensus 10 vT~~Er~K~~~qF~~Lkp~~gfi-tg~qArnfflqS~LP--~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKPGQGFI-TGDQARNFFLQSGLP--TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhccCCCCCcc-chHhhhhhHHhcCCC--hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 5777777777788888776 899 999999988877765 345555555 89999999999877631110
Q ss_pred --------------------------------------------------------------------C-----------
Q psy12589 74 --------------------------------------------------------------------A----------- 74 (149)
Q Consensus 74 --------------------------------------------------------------------~----------- 74 (149)
+
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 0
Q ss_pred -CC-----------------------CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC
Q psy12589 75 -ED-----------------------IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNS 130 (149)
Q Consensus 75 -~~-----------------------~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 130 (149)
.. ..-+....|+.+|+..+|++|...-+.+|...+ ++...+-.++...|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 00 012456789999999999999999999998877 8888899999999999999
Q ss_pred cccHHHHHHHH
Q psy12589 131 KVRYEDFVKIA 141 (149)
Q Consensus 131 ~i~~~eF~~~l 141 (149)
+++-++|+-.|
T Consensus 245 kL~~dEfilam 255 (1118)
T KOG1029|consen 245 KLSADEFILAM 255 (1118)
T ss_pred cccHHHHHHHH
Confidence 99999998654
No 77
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.09 E-value=2.9e-05 Score=47.41 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=37.4
Q ss_pred HhcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy12589 53 AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL 105 (149)
Q Consensus 53 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l 105 (149)
.+++|.|+..|+..+. . ......+...|..+|.|++|.||.+||...+
T Consensus 59 ~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 59 GNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3788888888888765 1 1124567788999999999999999999888
No 78
>KOG0036|consensus
Probab=98.08 E-value=7.8e-05 Score=54.14 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=70.7
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCccc
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 133 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 133 (149)
+++|.+++.+....+..........+..+.+|+..|.|.+|.++.+||++-+.. .+.++-.+|...|.++||.|+
T Consensus 26 ~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~ 100 (463)
T KOG0036|consen 26 KNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKID 100 (463)
T ss_pred CCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccC
Confidence 689999999998887776655556778899999999999999999999998855 234578899999999999999
Q ss_pred HHHHHHHHhc
Q psy12589 134 YEDFVKIACA 143 (149)
Q Consensus 134 ~~eF~~~l~~ 143 (149)
-+|.-..+..
T Consensus 101 ~~Ei~~~l~~ 110 (463)
T KOG0036|consen 101 PNEIWRYLKD 110 (463)
T ss_pred HHHHHHHHHH
Confidence 9887776654
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.04 E-value=3.5e-05 Score=39.52 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
++..|++.+|+.+++.++++.+..+|+..|.+++|.+..+||..+..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67889999999999889999999999999999999999988887654
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.02 E-value=1.3e-05 Score=47.98 Aligned_cols=64 Identities=20% Similarity=0.384 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHhhccC-CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 4 HFREQDIDEFRECFFLFARN-GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~-g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
.++++|...+..+|...++. |.| +..+.+.++...|+ +.+.+..++. +++|.+++.||+-.++.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~~~g~i-sg~~a~~~f~~S~L--~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDPQDGKI-SGDQAREFFMKSGL--PRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp --SCCHHHHHHHHHHCTSSSTTEE-EHHHHHHHHHHTTS--SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCeE-eHHHHHHHHHHcCC--CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 57888999999999999865 899 89999998887765 4577777776 67888888888877654
No 81
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.93 E-value=5e-06 Score=50.56 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~ 140 (149)
...+...|..+|.+++|.|+..|++.+...+ ...+.-+..+++..|.|+||.||..|+..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 4567888999999999999999999887655 244445888999999999999999999764
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.90 E-value=2.3e-05 Score=34.34 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=22.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 117 VDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 117 ~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
++.+|+.+|.|++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 83
>KOG0040|consensus
Probab=97.79 E-value=8.2e-05 Score=61.63 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q psy12589 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS-------SKEVDQIFREANVTMNSKVRYEDFVKIACAP 144 (149)
Q Consensus 79 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~ 144 (149)
.++..+|..||++.+|.++..+|+-+|+++|..++ +.+++.++...|++.+|.|+..+++.+|.++
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 35677999999999999999999999999997653 2379999999999999999999999999864
No 84
>KOG0169|consensus
Probab=97.77 E-value=0.0013 Score=51.38 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCCCHH
Q psy12589 6 REQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPK 79 (149)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~ 79 (149)
.......+..+|+..|++ |.+ +..+...+++.++..+....+..+++ ..++++...+|..+.......+
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~-~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---- 205 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHM-SFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---- 205 (746)
T ss_pred cchHHHHHHHHHHHHcccccccc-chhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----
Confidence 345557888999999975 899 99999999999988877776666665 6888999999999877655433
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhcC
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWG--EGLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAP 144 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~g~i~~~eF~~~l~~~ 144 (149)
++...|..+-.+ .++++.+++...+...+ .+.+.+.++.++..+... ..+.++.+.|..+|.++
T Consensus 206 ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 206 EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 578888877654 89999999999999874 358888899999888433 45669999999998753
No 85
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.75 E-value=3.9e-05 Score=35.45 Aligned_cols=28 Identities=46% Similarity=0.883 Sum_probs=23.3
Q ss_pred HHHHHHHhhccC--CCcCCHHHHHHHHH-HcC
Q psy12589 12 EFRECFFLFARN--GTIKTLDELSVIMR-SLG 40 (149)
Q Consensus 12 ~l~~~f~~~d~~--g~i~~~~~l~~~l~-~~~ 40 (149)
+++.+|+.+|++ |.| +..+|..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I-~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFI-DFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEE-EHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcC-cHHHHHHHHHHhcC
Confidence 478899999975 899 9999999998 565
No 86
>KOG4251|consensus
Probab=97.66 E-value=0.00026 Score=48.27 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcC-CCC--CHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCCC--
Q psy12589 9 DIDEFRECFFLFARN--GTIKTLDELSVIMRSLG-MSP--TIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDI-- 77 (149)
Q Consensus 9 ~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~-~~~--~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~-- 77 (149)
-.+.+..+|+..|-+ |.| +..++++.+..-. -.+ +-++-+..++ +++|.|+|++|...+.........
T Consensus 99 srrklmviFsKvDVNtDrki-sAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKI-SAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHhhcccCccccc-cHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 347889999999954 999 9999998775321 000 0111112222 799999999998876553321110
Q ss_pred -----------HHHHHHHHHhhcCCCCCc---------ccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHH
Q psy12589 78 -----------PKEVVDAFKAADTTKSGT---------VPAKYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKVRYED 136 (149)
Q Consensus 78 -----------~~~~~~~f~~~D~~~~g~---------I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~i~~~e 136 (149)
.++-...|..-++++.|. +|.+||...|+.- ....-..-++.++..+|.|++..+|..+
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 011122233334444444 4558888877642 1223334578889999999999999999
Q ss_pred HHHHHh
Q psy12589 137 FVKIAC 142 (149)
Q Consensus 137 F~~~l~ 142 (149)
|++...
T Consensus 258 Fislpv 263 (362)
T KOG4251|consen 258 FISLPV 263 (362)
T ss_pred hhcCCC
Confidence 988644
No 87
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.65 E-value=0.00022 Score=40.85 Aligned_cols=65 Identities=12% Similarity=0.256 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhcCC
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWG-E-GLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAPV 145 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~-~-~~~~~~~~~~~~~~~~~----~~g~i~~~eF~~~l~~~~ 145 (149)
++..+|..+-. +.+.||.++|.+.|.... . .++.+++..++..+..+ ..+.++.++|...|.++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36788999965 789999999999998754 3 47899999999998544 478999999999998754
No 88
>KOG0046|consensus
Probab=97.61 E-value=0.00033 Score=52.49 Aligned_cols=68 Identities=19% Similarity=0.419 Sum_probs=57.6
Q ss_pred CcCCHHHHHHHHHHHHhhccC-CCcCCHHHHHHHHHHcCCCC---CHHHHHHHHH----hcCCCcCHHHHHHHHccc
Q psy12589 3 HHFREQDIDEFRECFFLFARN-GTIKTLDELSVIMRSLGMSP---TIAELKKYLA----EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~-g~i~~~~~l~~~l~~~~~~~---~~~~~~~~~~----~~~g~i~~~ef~~~~~~~ 71 (149)
.++|.+|+..++..|...|.+ |++ +..++..++.+.+... .+++++.++. +.+|.|+|++|+.++...
T Consensus 11 ~~~tq~El~~l~~kF~~~d~~~G~v-~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLDDQKGYV-TVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccccHHHHHHHHHHHHhhcCCCCee-ehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 478999999999999999954 999 9999999998876643 4678888887 789999999999976543
No 89
>KOG0046|consensus
Probab=97.54 E-value=0.00045 Score=51.78 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG---LSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 79 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
..+...|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|+|+|++|+...
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 45778899999 999999999999999987643 457889999999999999999999999954
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.44 E-value=0.00023 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~ 107 (149)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777777777777777777777653
No 91
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.43 E-value=0.00065 Score=34.90 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=30.6
Q ss_pred cCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12589 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 59 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 107 (149)
++|.|...+++..--.. ....+..+|+.+|++++|.+..+||...++.
T Consensus 2 msf~Evk~lLk~~NI~~-~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEM-DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCc-CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 45666666655433222 2456677888888888888888888887764
No 92
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.42 E-value=0.0012 Score=48.63 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 40 GMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 40 ~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
|.......+..+++ +++|.|+..||.. ...+|..+|.|++|.|+.+||.+++...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45555566666665 7999999999952 4678999999999999999999998764
No 93
>KOG4065|consensus
Probab=97.42 E-value=0.00082 Score=40.46 Aligned_cols=62 Identities=16% Similarity=0.306 Sum_probs=46.1
Q ss_pred HHHH-HHHHhhcCCCCCcccHHHHHHHHHHh------CC---C-CCHHHHHHH----HHhhCCCCCCcccHHHHHHH
Q psy12589 79 KEVV-DAFKAADTTKSGTVPAKYLKHVLVNW------GE---G-LSSKEVDQI----FREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 79 ~~~~-~~f~~~D~~~~g~I~~~e~~~~l~~~------~~---~-~~~~~~~~~----~~~~~~~~~g~i~~~eF~~~ 140 (149)
+.++ ..|++.|-|++|+|+--|+..++..+ |. + .++.+++.+ ++.-|.|+||.|+|.+|.+.
T Consensus 66 eqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 66 EQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3444 46899999999999999999998754 22 2 344555544 44558889999999999875
No 94
>KOG4251|consensus
Probab=97.30 E-value=0.0016 Score=44.53 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=53.4
Q ss_pred cCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----hCCCCCHHH----HHHHHHhhCCCCC
Q psy12589 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-----WGEGLSSKE----VDQIFREANVTMN 129 (149)
Q Consensus 59 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~-----~~~~~~~~~----~~~~~~~~~~~~~ 129 (149)
++=.+|..++...........-+..+-+.+|+||+..++..+|....-. -|..+.... ..++-..+|.|++
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhD 295 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHD 295 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCc
Confidence 3448888888876654444455667788888888888888888755321 122233222 2333344577888
Q ss_pred CcccHHHHHHHH
Q psy12589 130 SKVRYEDFVKIA 141 (149)
Q Consensus 130 g~i~~~eF~~~l 141 (149)
|.+++++....+
T Consensus 296 GivTaeELe~y~ 307 (362)
T KOG4251|consen 296 GIVTAEELEDYV 307 (362)
T ss_pred cceeHHHHHhhc
Confidence 888888877664
No 95
>KOG0035|consensus
Probab=97.30 E-value=0.01 Score=47.63 Aligned_cols=130 Identities=17% Similarity=0.111 Sum_probs=93.5
Q ss_pred CcCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCH-----HHHHHHHH--h--cCCCcCHHHHHHHHccc
Q psy12589 3 HHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTI-----AELKKYLA--E--KGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~-----~~~~~~~~--~--~~g~i~~~ef~~~~~~~ 71 (149)
...++....++...|+.+++. |.+ +..++.++|..+|.+.-. +++..++. + ..|+++|.+|...+...
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa-~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAA-SPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccC-CHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 446778889999999999964 778 999999999999998764 23344444 2 33889999999999998
Q ss_pred ccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh-CCCC----CCcccHHHHHHHH
Q psy12589 72 SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA-NVTM----NSKVRYEDFVKIA 141 (149)
Q Consensus 72 ~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~-~~~~----~g~i~~~eF~~~l 141 (149)
....+...++..+|..+-++.. +|..+|+.. ..++..-+...... ..+. -+.++|..|...+
T Consensus 818 ~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~-------~~d~lv~d~~~~e~~~~~~~~~~~r~Ld~~~~s~~~ 884 (890)
T KOG0035|consen 818 YEDLDTELRAILAFEDWAKTKA-YLLLEELVR-------ERDELVRDLDIQEMAAYDEDERLPRGLDQVKFSSSL 884 (890)
T ss_pred hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh-------hccHhhHHHHHHhhcccccCCcccccchHHHHHHHh
Confidence 8877777888899999977655 899999887 23333333233322 1222 3458888877654
No 96
>KOG4666|consensus
Probab=97.01 E-value=0.003 Score=44.87 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=70.0
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcc
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKV 132 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~i 132 (149)
.+.+.|...+|...++... .+.+...|..||.+++|.++..|....+.-+ |...+++-++..++.++.+.||.+
T Consensus 239 ~kg~~igi~efa~~l~vpv-----sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ 313 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLRVPV-----SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGIS 313 (412)
T ss_pred ccCCCcceeEeeeeeecch-----hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccccccccc
Confidence 4666788888777666543 4568999999999999999999998888764 667899999999999999999999
Q ss_pred cHHHHHHHHh
Q psy12589 133 RYEDFVKIAC 142 (149)
Q Consensus 133 ~~~eF~~~l~ 142 (149)
+-.+|..++.
T Consensus 314 ge~~ls~ilq 323 (412)
T KOG4666|consen 314 GEHILSLILQ 323 (412)
T ss_pred chHHHHHHHH
Confidence 9988877664
No 97
>KOG1707|consensus
Probab=96.99 E-value=0.015 Score=44.59 Aligned_cols=134 Identities=14% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCcCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHH-HHcCCCCCHHHHHHHHH---------hcCCCcCHHHHHHHHc
Q psy12589 2 AHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIM-RSLGMSPTIAELKKYLA---------EKGGKLSFPDFLKVMH 69 (149)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l-~~~~~~~~~~~~~~~~~---------~~~g~i~~~ef~~~~~ 69 (149)
.+.|.+.-+..|.++|...|.+ |.+ +-.++...= +.++.++...++..+.. =.++.+++.-|+-+..
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~L-sd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGAL-SDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred cccccHHHHHHHHHHHhhhcccccccc-chhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 4578888899999999999975 888 777776543 34677776665554443 1334555665655432
Q ss_pred ccccCC-----------------------------------------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 70 THSKAE-----------------------------------------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 70 ~~~~~~-----------------------------------------~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
...... ...+-+..+|..||.|++|.++..|+..++..+
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 211100 011346778999999999999999999999987
Q ss_pred CCCC----CHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 109 GEGL----SSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 109 ~~~~----~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
.... +..+. .-.+..|.++++.|++.++
T Consensus 345 P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 345 PGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCCCccccc------ceecccceeehhhHHHHHH
Confidence 5321 11111 1123678899999988653
No 98
>KOG0377|consensus
Probab=96.98 E-value=0.0031 Score=46.64 Aligned_cols=67 Identities=12% Similarity=0.226 Sum_probs=51.2
Q ss_pred CCHHHHHHHHH-hcCCCcCHHHHHHHHccccc---CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12589 43 PTIAELKKYLA-EKGGKLSFPDFLKVMHTHSK---AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 109 (149)
Q Consensus 43 ~~~~~~~~~~~-~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~ 109 (149)
.+.+.+..++. +++|.|+.+||...+..... ..-..+.+...-+..|-+++|.|+..||..+++...
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 34455555554 89999999999998875443 222356788889999999999999999999998754
No 99
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.89 E-value=0.0016 Score=28.43 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 117 VDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 117 ~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+..+++.++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998764
No 100
>KOG0038|consensus
Probab=96.68 E-value=0.032 Score=35.29 Aligned_cols=85 Identities=18% Similarity=0.286 Sum_probs=60.1
Q ss_pred ccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH------hcCCCcCHHHHHHHHcccccCCCCHHHHH----HHHHhhcC
Q psy12589 21 ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA------EKGGKLSFPDFLKVMHTHSKAEDIPKEVV----DAFKAADT 90 (149)
Q Consensus 21 d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~------~~~g~i~~~ef~~~~~~~~~~~~~~~~~~----~~f~~~D~ 90 (149)
|.+|.+ +.++|..++.-+. .....+++.... ++++.|.-++....+..+.+..-..+++. ++..--|-
T Consensus 83 DG~Gnl-sfddFlDmfSV~s-E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~ 160 (189)
T KOG0038|consen 83 DGRGNL-SFDDFLDMFSVFS-EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADL 160 (189)
T ss_pred CCCCcc-cHHHHHHHHHHHH-hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Confidence 445899 9999988775432 222334444433 78889999998888888776654455544 45556699
Q ss_pred CCCCcccHHHHHHHHHH
Q psy12589 91 TKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 91 ~~~g~I~~~e~~~~l~~ 107 (149)
||+|.|+..||.+++..
T Consensus 161 DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 161 DGDGKLSFAEFEHVILR 177 (189)
T ss_pred CCCCcccHHHHHHHHHh
Confidence 99999999999998754
No 101
>PLN02952 phosphoinositide phospholipase C
Probab=96.62 E-value=0.039 Score=42.99 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=64.7
Q ss_pred hcCCCcCHHHHHHHHccccc-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhC-----
Q psy12589 54 EKGGKLSFPDFLKVMHTHSK-AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE--GLSSKEVDQIFREAN----- 125 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~----- 125 (149)
++.|.++|.+|..+++.... ....+.++..+|..+-. +.+.|+.++|...|..... ..+.+.+..++..+-
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccc
Confidence 35689999999888776542 22246789999999965 4478999999999998653 366777777765441
Q ss_pred --CCCCCcccHHHHHHHHhc
Q psy12589 126 --VTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 126 --~~~~g~i~~~eF~~~l~~ 143 (149)
....+.++++.|..+|..
T Consensus 91 ~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccCcCHHHHHHHHcC
Confidence 112345899999999875
No 102
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.59 E-value=0.00074 Score=37.18 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-------CCCcccHHHHHHHH
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT-------MNSKVRYEDFVKIA 141 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~i~~~eF~~~l 141 (149)
..+.+..+|+.+ .+++++||.++|++.| ++++++.++..+..- ..|..+|..|++.|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 457899999999 7788999999999886 333457777776322 12679999987644
No 103
>KOG2562|consensus
Probab=96.40 E-value=0.015 Score=43.24 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=40.7
Q ss_pred HHHHHH----hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q psy12589 81 VVDAFK----AADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138 (149)
Q Consensus 81 ~~~~f~----~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~ 138 (149)
+..+|. .+-...+|.|+.++|...+-+.-.+-++.-++..|+.+|.+++|.++-.+..
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~ 374 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELR 374 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHH
Confidence 445666 2223456778888888887777666777778888888888888887776543
No 104
>KOG4065|consensus
Probab=96.37 E-value=0.023 Score=34.39 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHHhh--ccCCCcCCHHHHHHHHHHc------CC----CCCHHHHHHHHH--------hcCCCcCHHH
Q psy12589 4 HFREQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSL------GM----SPTIAELKKYLA--------EKGGKLSFPD 63 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~--d~~g~i~~~~~l~~~l~~~------~~----~~~~~~~~~~~~--------~~~g~i~~~e 63 (149)
.+|+++++- --|+.. |++|.+ +.-++.+++... |- -+++.++..++. +++|.|+|.|
T Consensus 62 ~mtpeqlqf--HYF~MHDldknn~l-DGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgE 138 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLDKNNFL-DGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGE 138 (144)
T ss_pred hCCHHHHhh--hhhhhhccCcCCcc-hHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHH
Confidence 456665432 224444 466888 888888777543 21 235566666554 5777888888
Q ss_pred HHHH
Q psy12589 64 FLKV 67 (149)
Q Consensus 64 f~~~ 67 (149)
|+..
T Consensus 139 flK~ 142 (144)
T KOG4065|consen 139 FLKR 142 (144)
T ss_pred HHhh
Confidence 7653
No 105
>KOG2243|consensus
Probab=96.12 E-value=0.013 Score=49.37 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=51.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 84 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 84 ~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.|+-||+||.|.|++.+|..++..- ...+..+++-++.-...|.+...+|.+|+...-.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 4888999999999999999999754 3477888999999999999999999999987544
No 106
>KOG1955|consensus
Probab=96.08 E-value=0.021 Score=43.00 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
++.+..-|+.+.+|..|+|+..--+.++.... ++-+++..|+...|.+.||.++..||+..+
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 35567889999999999999999888887654 777889999999999999999999999865
No 107
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.98 E-value=0.074 Score=34.21 Aligned_cols=61 Identities=23% Similarity=0.368 Sum_probs=46.6
Q ss_pred HHHHHhh---cCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 82 VDAFKAA---DTTKSGTVPAKYLKHVLVNWGE---GLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 82 ~~~f~~~---D~~~~g~I~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
+.+|..| ...+...|+...|..+++.++. +++...++-+|..+...+...|+|++|..+|.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 3444444 4556778999999999999763 58999999999998766667799999999875
No 108
>KOG3555|consensus
Probab=95.94 E-value=0.025 Score=40.71 Aligned_cols=66 Identities=9% Similarity=0.110 Sum_probs=55.3
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCC
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP 146 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p 146 (149)
+.+.+..+|+.+|.+.+|.++..|++.+-.. -.+.-++.+|...|...||.|+-.|+..+.....|
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 4567899999999999999999999977532 44556899999999999999999999988765443
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.91 E-value=0.18 Score=32.93 Aligned_cols=127 Identities=14% Similarity=0.176 Sum_probs=76.9
Q ss_pred HHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH-------hcCCCcCHHHHHHHH---cccccCC----
Q psy12589 12 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA-------EKGGKLSFPDFLKVM---HTHSKAE---- 75 (149)
Q Consensus 12 ~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-------~~~g~i~~~ef~~~~---~~~~~~~---- 75 (149)
.|++...-+|+| |.| .+.|--..++++|+.+....+-.++- ...+.+--.-|.-.+ .+-..+.
T Consensus 8 ~LQqHvaFFDrd~DGiI-~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGII-YPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCCeeE-CHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 455555566765 999 89998899999999875554433332 122222111111111 1111111
Q ss_pred ------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC-----HHHHHH--HHHhhCCCCCCcccHHHHHHH
Q psy12589 76 ------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS-----SKEVDQ--IFREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 76 ------~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~-----~~~~~~--~~~~~~~~~~g~i~~~eF~~~ 140 (149)
=.++++..+|..+++.+.+.+|..|+.++++.-....+ ...++. +... -.+++|.+..++-..+
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGV 163 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhh
Confidence 13578999999999999999999999999987432222 222332 2333 3578899988776543
No 110
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.87 E-value=0.066 Score=30.45 Aligned_cols=58 Identities=17% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHHhhccC-CCcCCHHHHHHHHHHcCC--CCCHHHHHHHHH--------hcCCCcCHHHHHHHHccc
Q psy12589 13 FRECFFLFARN-GTIKTLDELSVIMRSLGM--SPTIAELKKYLA--------EKGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 13 l~~~f~~~d~~-g~i~~~~~l~~~l~~~~~--~~~~~~~~~~~~--------~~~g~i~~~ef~~~~~~~ 71 (149)
+..+|..|..+ +.| +..+|...|+.--. ..+...+..++. ...+.++++.|..++...
T Consensus 2 i~~if~~ys~~~~~m-t~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSSDKEYM-TAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCTTSSSE-EHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhCCCCcC-CHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 56677777654 677 78888888865422 345666666664 145677777777776543
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.73 E-value=0.19 Score=29.25 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------CC----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-------GE----GLSSKEVDQIFREANVTMNSKVRYEDFVKIACAP 144 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-------~~----~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~ 144 (149)
.++++.+|+.+ .|++|.|+...|...|+.+ |+ +-.+..+..+|... .....|+.+.|+.-|...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 36789999999 5789999999999998853 22 23667788888886 356679999999988874
No 112
>KOG0042|consensus
Probab=95.27 E-value=0.05 Score=41.80 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=58.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
..+..|..+|.++.|+++..++.++|+..+.+.+.+.++++....+.+.+|.+...+|..++..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3456799999999999999999999999998899999999999999999999999999888753
No 113
>KOG1265|consensus
Probab=95.14 E-value=0.45 Score=38.75 Aligned_cols=113 Identities=12% Similarity=0.224 Sum_probs=80.2
Q ss_pred CCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH------hcCC-----CcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCC
Q psy12589 23 NGTIKTLDELSVIMRSLGMSPTIAELKKYLA------EKGG-----KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 91 (149)
Q Consensus 23 ~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~------~~~g-----~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 91 (149)
.|+| ....+.+.+.+-. .+..++..+. +.+. ..+++.|..++..... ..++..+|..+..+
T Consensus 162 ~gri-p~knI~k~F~~~k---~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~eie~iF~ki~~~ 233 (1189)
T KOG1265|consen 162 EGRI-PVKNIIKTFSADK---KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEIEEIFRKISGK 233 (1189)
T ss_pred cccc-cHHHHHHHhhcCC---chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhHHHHHHHhccC
Confidence 3777 7666665554321 2233333332 2222 3466667777777654 34699999999988
Q ss_pred CCCcccHHHHHHHHHHhC----------CCCCHHHHHHHHHhhCCCC----CCcccHHHHHHHHhc
Q psy12589 92 KSGTVPAKYLKHVLVNWG----------EGLSSKEVDQIFREANVTM----NSKVRYEDFVKIACA 143 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~----~g~i~~~eF~~~l~~ 143 (149)
+.-++|.++|..+|..-. ....+..+..++..+..+. .|.++-+.|+..|++
T Consensus 234 ~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 234 KKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 889999999999998532 3577889999999997664 589999999999886
No 114
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.00 E-value=0.02 Score=34.82 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy12589 47 ELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103 (149)
Q Consensus 47 ~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~ 103 (149)
.+..+..+++|.++-.|+..+.....+ ....+...|+.+|.|++|.||..|...
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l~~---~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPLMP---PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTTST---TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHHhh---hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344555589999999998887665432 233578889999999999999999754
No 115
>KOG0998|consensus
Probab=94.93 E-value=0.033 Score=45.24 Aligned_cols=132 Identities=15% Similarity=0.298 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHHhhccC-CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccC-----
Q psy12589 5 FREQDIDEFRECFFLFARN-GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKA----- 74 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~-g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~----- 74 (149)
++..+..++..+|....+. |.+ +....+.++..-++ ....+.+++. +.+|.++..+|.-.++.....
T Consensus 123 ~~~qe~aky~q~f~s~~p~~g~~-sg~~~~pil~~s~L--p~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~ 199 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSPSNGLL-SGDKAKPILLNSKL--PSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNS 199 (847)
T ss_pred CCHHHHHHHHHHHhccCCCCCcc-ccchhhhhhhcCCC--ChhhhccccccccccccCCCChhhhhhhhhHHHHHhhccc
Confidence 5677888888889999886 888 88888887765544 3344444443 678888888887765321100
Q ss_pred -------------------------------------------------------------------------------C
Q psy12589 75 -------------------------------------------------------------------------------E 75 (149)
Q Consensus 75 -------------------------------------------------------------------------------~ 75 (149)
.
T Consensus 200 ~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp 279 (847)
T KOG0998|consen 200 EPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSP 279 (847)
T ss_pred CCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccCh
Confidence 0
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 76 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 76 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
.....+..+|...|.+.+|.|+..+.+..+...| ++...+..++...+..+.|.+++.+|.-.+
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhh
Confidence 0113456689999999999999999999998866 788889999999999999999999887654
No 116
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.72 E-value=0.27 Score=32.12 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-------------------------------------------------
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGE------------------------------------------------- 110 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~------------------------------------------------- 110 (149)
.+++-...||.|++|.|..-|-.+.++.+|.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 3555556678888888887777666665531
Q ss_pred ----CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 111 ----GLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 111 ----~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.+.++.++++|+.++....+.+++.|...++..
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 233677999999998888889999999998875
No 117
>KOG4347|consensus
Probab=94.56 E-value=0.075 Score=41.34 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=44.8
Q ss_pred cCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC
Q psy12589 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 129 (149)
Q Consensus 59 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 129 (149)
++|.+|...+....+-.....-+..+|+.+|.+++|.|+..++...|..+...--.+.+..+++.++.+.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc
Confidence 34444444444433222222335677888888888888888888888776544445566777777776665
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.39 E-value=0.16 Score=32.63 Aligned_cols=57 Identities=18% Similarity=0.402 Sum_probs=41.4
Q ss_pred HHHHHHhhc----cC-CCcCCHHHHHHHHHHcCC---CCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 13 FRECFFLFA----RN-GTIKTLDELSVIMRSLGM---SPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 13 l~~~f~~~d----~~-g~i~~~~~l~~~l~~~~~---~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
|+.+|..|. .+ ..| +...|.++++..++ .++..++..++. .+..+|+|++|...+..
T Consensus 1 L~~~F~~f~~fG~~~~~~m-~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEM-DSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEE-EHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccc-cHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 456677762 33 578 89999999998765 477788888886 23456999999988765
No 119
>KOG0042|consensus
Probab=94.36 E-value=0.17 Score=39.11 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCC
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAE 75 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~ 75 (149)
.++++++..++..|..+|.+ |++ ...+..++|+..+...+.+.++.++. ..+|.+...+|.++++....+.
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~-~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQ-AIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 47899999999999999985 899 89999999999887778877777665 4688999999999988876554
No 120
>KOG4578|consensus
Probab=94.25 E-value=0.058 Score=38.62 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
.+..-|..+|+|.++.|.+.|++-+=.-+-. .....-...+++..|.|+|..|++.|+..+|-
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3566799999999999999997654333221 13344567788888999999999999999875
No 121
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=93.42 E-value=0.086 Score=31.94 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 111 GLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
.+++++++.++..+..|..|+|.|.+|++...
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 37899999999999999999999999998765
No 122
>KOG1955|consensus
Probab=92.96 E-value=0.45 Score=36.25 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHHhhcc--CCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccc
Q psy12589 4 HFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHS 72 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~--~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~ 72 (149)
.+++++.+.+..-|+..-+ +|.| +...-+.++.+..+ +-.++-.|+. +.+|-+++.||+..++...
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfi-sGsaAknFFtKSkl--pi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFI-SGSAAKNFFTKSKL--PIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCccccc-ccHHHHhhhhhccC--chHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 4678888888888888754 4888 77777777765543 3456666665 6778888888888776544
No 123
>KOG0035|consensus
Probab=91.78 E-value=0.63 Score=37.98 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH-----HHHHHHHhhCCCCCCcccHHHHHHHHhcCC
Q psy12589 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK-----EVDQIFREANVTMNSKVRYEDFVKIACAPV 145 (149)
Q Consensus 79 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~ 145 (149)
++++..|+.+++...|.++.+++...+..+|....++ ++..++...+.+..|.+++.+|...|.+.+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 5688899999999999999999999999999766642 233344444556668999999999987654
No 124
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.08 E-value=2.1 Score=33.68 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=50.9
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHhcC
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE--GLSSKEVDQIFREANV-TMNSKVRYEDFVKIACAP 144 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~g~i~~~eF~~~l~~~ 144 (149)
+..++..+|..+.. ++.|+.++|...|..... ..+.+.+..++..+.. ...+.++.+.|..+|.+.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 45689999999864 479999999999988653 3567788888887632 245679999999998763
No 125
>KOG0169|consensus
Probab=90.96 E-value=0.89 Score=36.34 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~ 140 (149)
.+..+|...|++.+|.++..+...+++.+...+....+..++++.+.-.++++...+|.+.
T Consensus 137 wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~ 197 (746)
T KOG0169|consen 137 WIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKF 197 (746)
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHH
Confidence 4566777778888888888888887777776666666777777775556677777766654
No 126
>KOG1029|consensus
Probab=90.45 E-value=1.4 Score=35.64 Aligned_cols=57 Identities=12% Similarity=0.266 Sum_probs=47.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
..|..+- -+.|+||...-+.++-..| ++...+..++...|.|+||+++..+|.-.|.
T Consensus 20 ~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 20 AQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 3455554 4689999999999998877 7888899999999999999999999965543
No 127
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.35 E-value=3 Score=32.94 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHhhC-------CCCCCcccHHHHHHHHhc
Q psy12589 76 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE---GLSSKEVDQIFREAN-------VTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 76 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~-------~~~~g~i~~~eF~~~l~~ 143 (149)
..+.++..+|..|-.++ +.|+.++|.+.|..... ..+.+.+..++..+. .-+.+.++.+.|..+|.+
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34678999999996444 89999999999998752 246677777776542 113456999999998876
No 128
>PLN02228 Phosphoinositide phospholipase C
Probab=90.04 E-value=3.4 Score=32.47 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhcC
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE--GLSSKEVDQIFREANVT----MNSKVRYEDFVKIACAP 144 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~----~~g~i~~~eF~~~l~~~ 144 (149)
.+.++..+|..+-. ++.|+.++|...|..... ..+.+.+..++..+... ..|.++.+.|..+|.+.
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 56778888888853 357999998888887642 24566678888877532 24568889998888653
No 129
>KOG3866|consensus
Probab=89.72 E-value=0.72 Score=33.09 Aligned_cols=58 Identities=12% Similarity=0.252 Sum_probs=43.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 84 AFKAADTTKSGTVPAKYLKHVLVNW-----GEGLSSKE-----------VDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 84 ~f~~~D~~~~g~I~~~e~~~~l~~~-----~~~~~~~~-----------~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
.|...|.+++|+++-.|+..++..- ..+-.+++ -+.+++..|.|.|..|+.++|++.-
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 4677899999999999999887642 22222222 2446888899999999999998863
No 130
>KOG3449|consensus
Probab=87.38 E-value=3.1 Score=25.03 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
+..+|-+++.-++-..+..+++.+|..+|...+++.++.+++.+.
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 345666777778889999999999999999999999999999984
No 131
>KOG1264|consensus
Probab=87.33 E-value=6 Score=32.54 Aligned_cols=139 Identities=14% Similarity=0.209 Sum_probs=85.1
Q ss_pred CCHHHH-HHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHH--HHHHH--hcCCCcCHHHHHHHHcccccCCCC
Q psy12589 5 FREQDI-DEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAEL--KKYLA--EKGGKLSFPDFLKVMHTHSKAEDI 77 (149)
Q Consensus 5 l~~~~~-~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~--~~~~~--~~~g~i~~~ef~~~~~~~~~~~~~ 77 (149)
.++.++ ..++..+...|.. ..| +..+++..|.+.++.++.... +.+.. ...+.++|++|..+..+..-....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~i-sard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSI-SARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhhe-eHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccch
Confidence 445555 4556667777754 578 899999999988877665433 33433 467899999999987765533221
Q ss_pred H--HHHHHHHHhh--cCCCCCcccHHHHHHHHHHhCCCCCH---HHHHHHHHhhCCC-----CCCcccHHHHHHHHhcC
Q psy12589 78 P--KEVVDAFKAA--DTTKSGTVPAKYLKHVLVNWGEGLSS---KEVDQIFREANVT-----MNSKVRYEDFVKIACAP 144 (149)
Q Consensus 78 ~--~~~~~~f~~~--D~~~~g~I~~~e~~~~l~~~~~~~~~---~~~~~~~~~~~~~-----~~g~i~~~eF~~~l~~~ 144 (149)
. ......|-.= +...--.++..+|.+.|..-...... ..+..++..+-.| ....+.+.||+.+|-++
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhc
Confidence 1 1122223222 22223579999999998754322221 2355555555222 23458899999998654
No 132
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=87.17 E-value=3.3 Score=24.50 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=13.8
Q ss_pred HHHHHHHhhccCCCcCCHHHHHHHH
Q psy12589 12 EFRECFFLFARNGTIKTLDELSVIM 36 (149)
Q Consensus 12 ~l~~~f~~~d~~g~i~~~~~l~~~l 36 (149)
.+...|..+..+|++ +...|..++
T Consensus 31 ~VE~RFd~La~dG~L-~rs~Fg~CI 54 (100)
T PF08414_consen 31 EVEKRFDKLAKDGLL-PRSDFGECI 54 (100)
T ss_dssp HHHHHHHHH-BTTBE-EGGGHHHHH
T ss_pred HHHHHHHHhCcCCcc-cHHHHHHhc
Confidence 344455555566666 666666665
No 133
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=86.91 E-value=3.6 Score=22.60 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 97 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
+.+++..++...|..+++.++..+++.-+..+--..+-..+..+|
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 445788888888888888888888888654433334444444443
No 134
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.17 E-value=4.9 Score=23.42 Aligned_cols=61 Identities=18% Similarity=0.374 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhc-cCCCcCCHHHHHHHHHHc-------C----CCCCHHHHHHHHHh--cCCCcCHHHHHHHHccc
Q psy12589 10 IDEFRECFFLFA-RNGTIKTLDELSVIMRSL-------G----MSPTIAELKKYLAE--KGGKLSFPDFLKVMHTH 71 (149)
Q Consensus 10 ~~~l~~~f~~~d-~~g~i~~~~~l~~~l~~~-------~----~~~~~~~~~~~~~~--~~g~i~~~ef~~~~~~~ 71 (149)
.++++-+|+.+. .+|.+ +...|...|+.+ | +...+.-+...+.. ....|+..+|+..+...
T Consensus 2 ~dKyRylFslisd~~g~~-~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCM-DQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B--HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCC-cHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 367888898885 46999 899888877632 1 11145556666653 46678888888877664
No 135
>KOG0039|consensus
Probab=85.20 E-value=2.9 Score=33.43 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHhhCCC
Q psy12589 56 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---G-----EGLSSKEVDQIFREANVT 127 (149)
Q Consensus 56 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~~~~ 127 (149)
++ +++++|. ....+.+.+++..|..+|. ++|.++.+++..++... + ...+.+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 8888888 3344457789999999998 89999999999988753 1 234445566677777888
Q ss_pred CCCcccHHHHHHHHhc
Q psy12589 128 MNSKVRYEDFVKIACA 143 (149)
Q Consensus 128 ~~g~i~~~eF~~~l~~ 143 (149)
..|.+.+.++...+..
T Consensus 74 ~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQ 89 (646)
T ss_pred ccceeeecchhHHHHh
Confidence 8887777777666554
No 136
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.08 E-value=6 Score=23.46 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC---CCCCcccHHHHHHHH
Q psy12589 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV---TMNSKVRYEDFVKIA 141 (149)
Q Consensus 79 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~i~~~eF~~~l 141 (149)
..++.-|..+-. +|+++.+.|.+++ |.+-+.+-..++|..+.. -....|+.++...+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW 90 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFW 90 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHH
Confidence 345555666654 6777777777666 544455556666655521 123457776665554
No 137
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=84.73 E-value=4.1 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=12.0
Q ss_pred hhcCCCCCcccHHHHHHHHH
Q psy12589 87 AADTTKSGTVPAKYLKHVLV 106 (149)
Q Consensus 87 ~~D~~~~g~I~~~e~~~~l~ 106 (149)
.||...+.+||.++++++..
T Consensus 11 LYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred ccCCCccceeeHHHHHHHHH
Confidence 45555666666666666655
No 138
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=84.54 E-value=2.3 Score=22.95 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=29.2
Q ss_pred HhhcCCCCCcccHHHHHHHHHH----------hCCCCCHHHHHHHHHhh
Q psy12589 86 KAADTTKSGTVPAKYLKHVLVN----------WGEGLSSKEVDQIFREA 124 (149)
Q Consensus 86 ~~~D~~~~g~I~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~ 124 (149)
+.||...+.+||.++++++... .|..++..-+.+++.+-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHH
Confidence 4689999999999999999885 25566666666665554
No 139
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=84.26 E-value=6.9 Score=23.81 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=36.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 82 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 82 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
..++-....-|+..+|.+++..+|...|..+.+..+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34555555667778999999999999999999999999998884
No 140
>PLN02952 phosphoinositide phospholipase C
Probab=84.18 E-value=16 Score=29.13 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCCcCCHHHHHHHHHHcCC--CCCHHHHHHHHH---hcCCCcCHHHHHHHHcccccCC-CCHHHHHHHHHhh----c---
Q psy12589 23 NGTIKTLDELSVIMRSLGM--SPTIAELKKYLA---EKGGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAA----D--- 89 (149)
Q Consensus 23 ~g~i~~~~~l~~~l~~~~~--~~~~~~~~~~~~---~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----D--- 89 (149)
.|.+ +..+|..+.+.+.. .....++..++. .+.+.++.++|..++....... ...+.+..++..+ .
T Consensus 14 ~g~l-~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSY-NYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCc-CHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 4889 99999888887643 236788888887 4556899999999988765433 2234444444432 1
Q ss_pred CCCCCcccHHHHHHHHHH
Q psy12589 90 TTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 90 ~~~~g~I~~~e~~~~l~~ 107 (149)
..+.+.++.+.|...|.+
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 122346899999888853
No 141
>PLN02223 phosphoinositide phospholipase C
Probab=84.04 E-value=9.2 Score=29.90 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHh
Q psy12589 76 DIPKEVVDAFKAADTTKSGTVPAKYLKHVL---VNWG--EGLSSKEVDQIFREANVT--------MNSKVRYEDFVKIAC 142 (149)
Q Consensus 76 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l---~~~~--~~~~~~~~~~~~~~~~~~--------~~g~i~~~eF~~~l~ 142 (149)
...+.++.+|..+- .+.|.++.+.+.+.+ .... ...+.++++.++..+-.. ..+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35678999999994 578999999999998 4432 246777778877765321 235699999999987
Q ss_pred cC
Q psy12589 143 AP 144 (149)
Q Consensus 143 ~~ 144 (149)
++
T Consensus 92 s~ 93 (537)
T PLN02223 92 ST 93 (537)
T ss_pred Cc
Confidence 63
No 142
>cd08807 CARD_CARD10_CARMA3 Caspase activation and recruitment domain of CARD10-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD10, also known as CARMA3 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 3) or BIMP1. The CARMA3-BCL10-MALT1 signalosome plays a role in the GPCR-induced NF-kB activation. CARMA3 is more widely expressed than CARMA1, which is found only in hematopoietic cells. In endothelial and smooth muscle cells, CARMA3-mediated NF-kB activation induces pro-inflammatory signals within the vasculature and is a key factor in atherogenesis. In bronchial epithelial cells, CARMA3-mediated NF-kB signaling is important for the development of allergic airway inflammation. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains fo
Probab=83.91 E-value=1.7 Score=24.76 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCCC
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 149 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~~ 149 (149)
-|.|+..+..+++.+.....+...+..++... ...|.=.|..|+..|.-.+|+.|
T Consensus 28 ~~VL~~~deEEI~~~~~~~~~~~k~~~LLDIL--~trG~~gf~aFLeSLE~~yp~~y 82 (86)
T cd08807 28 CRVIDEQDEEEVLNSYRFPCRINRTGRLMDIL--RGRGKRGYEAFLEALEFYYPEHF 82 (86)
T ss_pred hCCCChhhHHHHHhccchhhHHHHHHHHHHHH--HhcCchHHHHHHHHHHhhhHHHh
Confidence 36677777777777665555666666677666 34567789999999997788866
No 143
>KOG2871|consensus
Probab=83.31 E-value=1.3 Score=32.51 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHhhCCCCCCcccHHHHH
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE-VDQIFREANVTMNSKVRYEDFV 138 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~g~i~~~eF~ 138 (149)
.+.++.+|..+|+.++|+|+-+-+++++...+..+++.. +..+-..++...-|.|-..+|.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 467999999999999999999999999998875555433 3333333444445555555543
No 144
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=81.66 E-value=1.6 Score=24.15 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 57 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
-.+.|.-....+..... .+.+..+...|+.=..+.|+++||.+.++.+
T Consensus 7 p~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45666666666666553 4556666667766678889999988888875
No 145
>KOG4578|consensus
Probab=81.01 E-value=1.4 Score=31.92 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=39.2
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
++++.|+-.|+..+=.............+..|+.+|-|++..|+..|++..|...
T Consensus 345 N~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 345 NSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred cccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 6777777666555433333223334567889999999999999999999888653
No 146
>KOG1707|consensus
Probab=80.99 E-value=3.9 Score=32.11 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=51.2
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCH--HHHHHHHHhcCCCcCHHHHHHHHccccc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTI--AELKKYLAEKGGKLSFPDFLKVMHTHSK 73 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~g~i~~~ef~~~~~~~~~ 73 (149)
+|++.-.+-+..+|..+|.+ |.+ +..++..+....+..++. ...........|.+++.-|+..|.....
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L-~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL~Tl 380 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGAL-SPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSLMTL 380 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCc-CHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHHHhh
Confidence 57888899999999999964 899 999999999887554422 1111111246799999999999876553
No 147
>KOG4347|consensus
Probab=80.94 E-value=2 Score=33.92 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHHHhhc--cC---C-----------CcCCHHHHHHHHHHc-CCCCCHHHHHHHHH----hcCCCcCHH
Q psy12589 4 HFREQDIDEFRECFFLFA--RN---G-----------TIKTLDELSVIMRSL-GMSPTIAELKKYLA----EKGGKLSFP 62 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d--~~---g-----------~i~~~~~l~~~l~~~-~~~~~~~~~~~~~~----~~~g~i~~~ 62 (149)
.++..+++.+..+|+.-= .. | ++ +...+..+.+.+ .+..+..-+.+++. +.+|.++|.
T Consensus 497 ~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi-~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~ 575 (671)
T KOG4347|consen 497 SLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYI-DYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFK 575 (671)
T ss_pred ccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHH-HHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHH
Confidence 467788888877776531 11 1 22 333333433332 12223333444444 688999999
Q ss_pred HHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHH
Q psy12589 63 DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYL 101 (149)
Q Consensus 63 ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~ 101 (149)
+++..+.....+. .-+++...|+.+|++++ ....++.
T Consensus 576 ~lv~gL~~l~~~~-~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 576 DLVSGLSILKAGD-ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHhhccCCcc-ccccccc
Confidence 9999998876544 46678899999999999 9998888
No 148
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=80.92 E-value=9.4 Score=23.10 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=40.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~ 139 (149)
.++-++...|+..+|.+++..+|+..|..+.+..+..+++.+.. .+..+.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa 56 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIA 56 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34555556677799999999999999999999999999988842 34455554
No 149
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=80.89 E-value=4.5 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=26.8
Q ss_pred CCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy12589 23 NGTIKTLDELSVIMRSLGMSPTIAELKKYLA 53 (149)
Q Consensus 23 ~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~ 53 (149)
|=-| +.+.++..+.++|.++|+..++.+++
T Consensus 29 NPpi-ne~mir~M~~QMG~kpSekqi~Q~m~ 58 (64)
T PF03672_consen 29 NPPI-NEKMIRAMMMQMGRKPSEKQIKQMMR 58 (64)
T ss_pred CCCC-CHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4568 88999999999999999999999876
No 150
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=80.47 E-value=1.9 Score=27.21 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC-------CCCCcccHHHHHHHHhc
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV-------TMNSKVRYEDFVKIACA 143 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~i~~~eF~~~l~~ 143 (149)
..+.||.+||.+.-+-+.. +...+..++.++.. +..+.|+|+.|..+|..
T Consensus 4 ~~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~ 60 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT 60 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH
T ss_pred ceeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH
Confidence 4678889999888765532 33456777777632 24458999999998864
No 151
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=78.76 E-value=6.8 Score=21.23 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
+-.|+.+-++.++.+.|.+.++..++.+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56799999999999999999999999998876
No 152
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=78.70 E-value=11 Score=23.94 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=24.6
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCC
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK 92 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 92 (149)
+..+.|+|+-|..++.......-+.+-.+..|..|-...
T Consensus 44 ~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 44 NPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp EETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 355689999999999887766644556678888886543
No 153
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.58 E-value=3.8 Score=24.08 Aligned_cols=54 Identities=6% Similarity=0.025 Sum_probs=28.0
Q ss_pred hcCCCcCHHHHHHHHcccccC-CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKA-EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 107 (149)
..+|.++-.|-..+-...... .-..+....+...+........+..++.+.+..
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 11 RADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 457888777755443322211 112334444555554444455667777666654
No 154
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=78.24 E-value=6.7 Score=19.43 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcc---C-CCcCCHHHHHHHHHH
Q psy12589 8 QDIDEFRECFFLFAR---N-GTIKTLDELSVIMRS 38 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~---~-g~i~~~~~l~~~l~~ 38 (149)
.-+..+-.+|..|.. + ..+ +..+|+.+|+.
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~L-sk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTL-SKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSE-EHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeE-cHHHHHHHHHH
Confidence 346778889999973 3 578 99999998864
No 155
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=78.01 E-value=5.6 Score=21.97 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 112 LSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
++......+...++.-..+.|+.++|+..|+
T Consensus 22 l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEFKKKKISREEFVRKLR 52 (70)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 5555555555555544556666666666554
No 156
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=77.65 E-value=4.3 Score=25.26 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=20.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
+...+..||++++|.|+.-.++.++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 4567889999999999999999988653
No 157
>KOG2871|consensus
Probab=76.81 E-value=2.3 Score=31.41 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=43.5
Q ss_pred HHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH-----hcCCCcCHHHHHHHHc
Q psy12589 11 DEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA-----EKGGKLSFPDFLKVMH 69 (149)
Q Consensus 11 ~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-----~~~g~i~~~ef~~~~~ 69 (149)
+.++++|+.+|+. |.| +..-++.++..++...++.....+++ +.-|.|-..+|...+.
T Consensus 309 ~q~rR~f~a~d~~d~nfi-s~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFI-SCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred HHHHhhhhccCccCCCee-ecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 5678999999974 799 99999999999998777777666665 3555555555555443
No 158
>PRK00523 hypothetical protein; Provisional
Probab=76.29 E-value=7.2 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.7
Q ss_pred CCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy12589 23 NGTIKTLDELSVIMRSLGMSPTIAELKKYLA 53 (149)
Q Consensus 23 ~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~ 53 (149)
|=-| +.+.++..+.++|.++|+..++.+++
T Consensus 37 NPpi-ne~mir~M~~QMGqKPSekki~Q~m~ 66 (72)
T PRK00523 37 NPPI-TENMIRAMYMQMGRKPSESQIKQVMR 66 (72)
T ss_pred CcCC-CHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4578 88999999999999999999999876
No 159
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=76.16 E-value=6.7 Score=22.30 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=31.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCC
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDY 148 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~ 148 (149)
.|.||.++.-.+.. .+-+.+....++... ...|...+.-|+++|....|..
T Consensus 27 ~~Vit~e~~~~I~a---~~T~~~kar~Lld~l--~~kG~~A~~~F~~~L~e~~p~L 77 (82)
T cd08330 27 KKVITQEQYSEVRA---EKTNQEKMRKLFSFV--RSWGASCKDIFYQILREEEPYL 77 (82)
T ss_pred CCCCCHHHHHHHHc---CCCcHHHHHHHHHHH--HccCHHHHHHHHHHHHHhChHH
Confidence 46777776666553 224456666666665 3356677777777777666643
No 160
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=75.67 E-value=8.7 Score=28.20 Aligned_cols=44 Identities=11% Similarity=0.304 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
+.|.||++|-.+.++......+++.++.+++.++ ||.++|..++
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4788888888888887655666778888888886 7778887664
No 161
>PRK00523 hypothetical protein; Provisional
Probab=74.97 E-value=9.4 Score=21.18 Aligned_cols=33 Identities=12% Similarity=0.363 Sum_probs=29.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
.+-.|+.+-++.++.+.|.+.++..++.+++..
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356899999999999999999999999998876
No 162
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.82 E-value=11 Score=20.80 Aligned_cols=34 Identities=15% Similarity=0.366 Sum_probs=30.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.+-.|+.+-++.++.+.|.+.++..++++++...
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3568999999999999999999999999988763
No 163
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=74.63 E-value=8.1 Score=28.13 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHH----h--cCCCcCHHHHHHHHcccccCCCCHHHHHHHHH-----hhcCCCCCcccHHHHHHHHHHh
Q psy12589 40 GMSPTIAELKKYLA----E--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK-----AADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 40 ~~~~~~~~~~~~~~----~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~-----~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
.+.+.+++++.++. + ...-+-=++|-..+... ..+.+..|- .+-..-+|++--.|+.+-++.
T Consensus 35 d~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l------~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~- 107 (357)
T PLN02508 35 NKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKI------QGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK- 107 (357)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhccchhhC------CHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc-
Confidence 55556667777665 1 11123333344333321 123444443 334555777777766655433
Q ss_pred CCCCCHHHHHHHHHhhCCCC
Q psy12589 109 GEGLSSKEVDQIFREANVTM 128 (149)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ 128 (149)
....+.++|..+.+|.
T Consensus 108 ----~nP~lae~F~lMaRDE 123 (357)
T PLN02508 108 ----TNPVVAEIFTLMSRDE 123 (357)
T ss_pred ----CChHHHHHHHHhCchh
Confidence 1235677777776664
No 164
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=74.42 E-value=17 Score=22.18 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=34.4
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 84 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 84 ~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
+|-+.-.-++..+|.+++..+|...|..+....+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 444444456778999999999999999999988888888884
No 165
>PHA02105 hypothetical protein
Probab=73.86 E-value=8.7 Score=20.24 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCC--CcccHHHHHHHH
Q psy12589 95 TVPAKYLKHVLVNWG---EGLSSKEVDQIFREANVTMN--SKVRYEDFVKIA 141 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~--g~i~~~eF~~~l 141 (149)
.+|++|++.++..-. .++..+.++.+-..+....- --++|++|-++|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 478888888887643 46777778887777765543 358999997765
No 166
>PLN02222 phosphoinositide phospholipase C 2
Probab=72.40 E-value=27 Score=27.81 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=42.4
Q ss_pred HHHHHHHhhccCCCcCCHHHHHHHHHHcCC--CCCHHHHHHHHH-----hcCCCcCHHHHHHHHcc
Q psy12589 12 EFRECFFLFARNGTIKTLDELSVIMRSLGM--SPTIAELKKYLA-----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 12 ~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~--~~~~~~~~~~~~-----~~~g~i~~~ef~~~~~~ 70 (149)
++..+|..|..++.+ +.++|..+|..... ..+.+.+..++. ...+.++++.|..++..
T Consensus 26 ei~~if~~~~~~~~m-t~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 26 EIKTIFEKYSENGVM-TVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHhcCCCCc-CHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 556777777656889 99999999987543 235566666555 24567999999999865
No 167
>PRK01844 hypothetical protein; Provisional
Probab=71.97 E-value=11 Score=20.97 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=26.6
Q ss_pred CCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy12589 23 NGTIKTLDELSVIMRSLGMSPTIAELKKYLA 53 (149)
Q Consensus 23 ~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~ 53 (149)
+=-| +.+.++..+.+.|.++|+..++.+++
T Consensus 36 NPpi-ne~mir~Mm~QMGqkPSekki~Q~m~ 65 (72)
T PRK01844 36 NPPI-NEQMLKMMMMQMGQKPSQKKINQMMS 65 (72)
T ss_pred CCCC-CHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3478 88999999999999999999998876
No 168
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=71.58 E-value=13 Score=19.67 Aligned_cols=52 Identities=12% Similarity=0.277 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH--hcCCCcCH
Q psy12589 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA--EKGGKLSF 61 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~g~i~~ 61 (149)
+||+.....|+.+|......+.+ ...++.+.| .++..-+..+++ ...|.|++
T Consensus 1 ~Lt~~~e~YL~~Iy~l~~~~~~v-~~~~iA~~L-----~vs~~tvt~ml~~L~~~GlV~~ 54 (60)
T PF01325_consen 1 MLTESEEDYLKAIYELSEEGGPV-RTKDIAERL-----GVSPPTVTEMLKRLAEKGLVEY 54 (60)
T ss_dssp TCSCHHHHHHHHHHHHHHCTSSB-BHHHHHHHH-----TS-HHHHHHHHHHHHHTTSEEE
T ss_pred CCCcHHHHHHHHHHHHHcCCCCc-cHHHHHHHH-----CCChHHHHHHHHHHHHCCCEEe
Confidence 46777788899999988866888 888888876 334455555444 44555544
No 169
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=71.55 E-value=5.5 Score=16.39 Aligned_cols=14 Identities=29% Similarity=0.199 Sum_probs=7.5
Q ss_pred CCCCCcccHHHHHH
Q psy12589 90 TTKSGTVPAKYLKH 103 (149)
Q Consensus 90 ~~~~g~I~~~e~~~ 103 (149)
-+++|.|+.-++..
T Consensus 2 vN~DG~vna~D~~~ 15 (21)
T PF00404_consen 2 VNGDGKVNAIDLAL 15 (21)
T ss_dssp TTSSSSSSHHHHHH
T ss_pred CCCCCcCCHHHHHH
Confidence 45566665555543
No 170
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=70.42 E-value=14 Score=19.70 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=26.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
+-.+|.+|+..++..++..++.+++-.++..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 34688899999999998888888888887776
No 171
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=69.69 E-value=5.9 Score=22.85 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=37.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCC
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDY 148 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~ 148 (149)
..|.+|.++...+...-......+....++.... ..|.=.|.-|+++|...+|+.
T Consensus 27 q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~--~rG~~Af~~F~~aL~~~yp~L 81 (86)
T cd08785 27 QCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILA--TRGKRGYVAFLESLEFYYPEL 81 (86)
T ss_pred hcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHH--hcCcchHHHHHHHHHHhCHHH
Confidence 3578888888888764433334466777777764 345567889999987667764
No 172
>PRK01844 hypothetical protein; Provisional
Probab=69.31 E-value=15 Score=20.38 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=29.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
.+-.|+.+-++.++.+.|.+.++..++.+.+..
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356899999999999999999999999998876
No 173
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=69.18 E-value=5.6 Score=22.55 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=14.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
.|+||.+++..+|.... ++++.++.++..+
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHH
Confidence 46666666666665333 5556666665554
No 174
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=68.30 E-value=23 Score=21.24 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
+|.+++..+|+..|..+++..+..+++.+. ..+.++.+...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 999999999999999999999999999873 13455555543
No 175
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=68.24 E-value=9.3 Score=20.72 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTM 128 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (149)
.++.++..++.+.|...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4578999999999988888888888888888886554
No 176
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=68.21 E-value=21 Score=20.60 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.||..||.+..+..|.+++.++++.++..+.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILR 44 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4666677777777777777776666666653
No 177
>KOG2243|consensus
Probab=68.03 E-value=11 Score=33.28 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=38.3
Q ss_pred HHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcc
Q psy12589 17 FFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 17 f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~ 70 (149)
|+.||++ |.| +..+|.+++..-. ..+..++.-++. +.+..++|.+|+.-+..
T Consensus 4063 fkeydpdgkgii-skkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4063 FKEYDPDGKGII-SKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred chhcCCCCCccc-cHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 4567877 678 9999999987432 345556666665 67789999999987654
No 178
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=67.73 E-value=27 Score=21.67 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhh
Q psy12589 74 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQIFREA 124 (149)
Q Consensus 74 ~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 124 (149)
.....+++..+|+.|- ++.|+.+.+-.++... |..+|..+++.+...+
T Consensus 32 d~tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 32 DETFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred CchHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 3334567777888885 3678888888888776 4678888877776665
No 179
>PLN02228 Phosphoinositide phospholipase C
Probab=67.11 E-value=42 Score=26.67 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=32.7
Q ss_pred CHHHHHHHHH--hcCCCcCHHHHHHHHcccccCC-CCHHHHHHHHHhhcCC----CCCcccHHHHHHHHH
Q psy12589 44 TIAELKKYLA--EKGGKLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTT----KSGTVPAKYLKHVLV 106 (149)
Q Consensus 44 ~~~~~~~~~~--~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~D~~----~~g~I~~~e~~~~l~ 106 (149)
+..++..++. .+++.++.++|..++....... ...+.+..++..+... ..|.++.+.|...|.
T Consensus 22 ~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 22 PPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 4455555554 2334667777666665543322 1234455555555332 235677777766664
No 180
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=66.85 E-value=10 Score=25.13 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=32.7
Q ss_pred hccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCCcCHH
Q psy12589 20 FARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA-EKGGKLSFP 62 (149)
Q Consensus 20 ~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~g~i~~~ 62 (149)
+|++|.+ +.++|.+.++.-+..++.+.+..+.. +..++..+.
T Consensus 28 ld~~G~v-~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWV-DIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS 70 (179)
T ss_pred cCCCCCE-EHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec
Confidence 3677999 99999998876566789999999888 455566554
No 181
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=66.45 E-value=15 Score=22.87 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=28.7
Q ss_pred CCCcCCHHHHHHHHHHHHhhcc-CCCcCCHHHHHHHH
Q psy12589 1 MAHHFREQDIDEFRECFFLFAR-NGTIKTLDELSVIM 36 (149)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~-~g~i~~~~~l~~~l 36 (149)
||+.+|+++.++++..--.+-+ +|++ +..++....
T Consensus 1 Ma~~~T~eer~eLk~rIvElVRe~GRi-Ti~ql~~~T 36 (127)
T PF06163_consen 1 MARVFTPEEREELKARIVELVREHGRI-TIKQLVAKT 36 (127)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCc-cHHHHHHHH
Confidence 8999999999999877766665 5999 888887654
No 182
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=66.06 E-value=22 Score=21.04 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
++..++.-.|.-+...++++++..+...+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L 48 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAEL 48 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHH
Confidence 44444444444444445555554444444
No 183
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.42 E-value=21 Score=22.71 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCC
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNW--GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV 145 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~ 145 (149)
.+|+..+. +|.++..|......-+ ..+++.++++.++.....-+...+++..|...|.++.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 45666654 5666666655443322 2457788888888777666667788888877776543
No 184
>KOG2301|consensus
Probab=64.86 E-value=5.7 Score=35.17 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC----CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 76 DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEG----LSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 76 ~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+..+.+..+|..+|++..|+|+..++..+++.+..+ ..... +.+.-.+....+|.|++.+-+-++..
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 345788999999999999999999999999987432 22212 22333345557777888777666653
No 185
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=64.70 E-value=6.8 Score=22.46 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=37.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCC
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDY 148 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~ 148 (149)
.|.|+.++..+++..-....+...+..++... ...|.=.|..|+..|...+|..
T Consensus 28 ~~Vl~~~deEeI~~~~~~~~~~~kvg~LLDIL--~~rG~~~f~aFLeSLE~~yP~l 81 (86)
T cd08809 28 CKVLNSDDEEQVLNDPSLVIRKRKVGVLLDIL--QRTGLKGYEAFLESLELYYPQL 81 (86)
T ss_pred hCCCChhhHHHHHcCcccchHHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHH
Confidence 46777788888877655455566666666665 3456667888888887656654
No 186
>KOG1954|consensus
Probab=64.61 E-value=11 Score=28.35 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~ 139 (149)
...+|-.+.+ -+|.|+-..-+.-+- +.+++...+-.+++..|.|.||.++-++|.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4556766655 468888776666553 4568888899999999999999999999953
No 187
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=64.59 E-value=13 Score=19.95 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIF 121 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~ 121 (149)
.|+.++|..+|+.....++.++++..-
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 588899999998888778888776654
No 188
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=63.61 E-value=20 Score=22.64 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=38.1
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhhCCCCCC-cccHHHHHHH
Q psy12589 92 KSGTVPAKYLKHVLVNWG---------EGLSSKEVDQIFREANVTMNS-KVRYEDFVKI 140 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~g-~i~~~eF~~~ 140 (149)
|+..||.+||.++...-. ..++++++..+.+.+.....+ .++..|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 678899999999988642 358899999999998766555 4888877654
No 189
>KOG0998|consensus
Probab=63.17 E-value=4.9 Score=33.29 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
.+...|+..|..++|.|+..+-...+...| +....+-.++...+..+.|.++...|...++
T Consensus 12 ~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lr 72 (847)
T KOG0998|consen 12 LFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALR 72 (847)
T ss_pred hHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccch
Confidence 467789999999999999999999998777 8888888888888888889999998887765
No 190
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=62.65 E-value=16 Score=20.26 Aligned_cols=30 Identities=7% Similarity=0.336 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhccCCCcCCHHHHHHHHHH
Q psy12589 8 QDIDEFRECFFLFARNGTIKTLDELSVIMRS 38 (149)
Q Consensus 8 ~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~ 38 (149)
..-+.++.++....+.+.+ +..+..++...
T Consensus 36 ~~yedl~diy~~V~~K~~f-S~sEm~aI~~E 65 (71)
T PF06569_consen 36 EKYEDLKDIYEMVMSKDSF-SPSEMQAIAEE 65 (71)
T ss_pred hhHHHHHHHHHHHHhccCC-CHHHHHHHHHH
Confidence 3333334433333333444 44444444333
No 191
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=61.84 E-value=4.7 Score=25.05 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=39.5
Q ss_pred hcCCCcCHHHHHHHHcccccCCC-CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHH----HHHhhCCCC
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAED-IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ----IFREANVTM 128 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~----~~~~~~~~~ 128 (149)
..||.|+-.|-..+......... .......+...++.-.....+..++ +..+...++.+.... ++.....|+
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~r~~ll~~l~~ia~ADG 111 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEEL---LRELRDSLSPEEREDLLRMLIAIAYADG 111 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHH---HHHHCTS--HHHHHHHHHHHHHHCTCTT
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHH---HHHHHHhhchHHHHHHHHHHHHHHhcCC
Confidence 67899998886665443311111 1334445555554333333444444 444454455554333 444444454
Q ss_pred CCcccHHHHHHHHh
Q psy12589 129 NSKVRYEDFVKIAC 142 (149)
Q Consensus 129 ~g~i~~~eF~~~l~ 142 (149)
.-.-....|+..+.
T Consensus 112 ~~~~~E~~~l~~ia 125 (140)
T PF05099_consen 112 EISPEEQEFLRRIA 125 (140)
T ss_dssp C-SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44445556666554
No 192
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase, monomeric form. This family is of biopterin and metal-dependent hydroxylases is related to a family of longer, multimeric aromatic amino acid hydroxylases that have additional N-terminal regulatory sequences. These include tyrosine 3-monooxygenase, phenylalanine-4-hydroxylase, and tryptophan 5-monoxygenase.
Probab=59.71 E-value=59 Score=22.89 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCC----CCHHHHHHHHH--------hcCCCcCHHHHHHHHc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMS----PTIAELKKYLA--------EKGGKLSFPDFLKVMH 69 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~----~~~~~~~~~~~--------~~~g~i~~~ef~~~~~ 69 (149)
.-|+++.+.++.+|+..-+- |+- +.++...+..+|+. +..+++...++ ...|.|+..+|...+.
T Consensus 10 ~YT~~e~~~W~~l~~r~~~~~~~~A--c~~yl~gl~~lgl~~d~IPql~~vn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA 87 (248)
T TIGR01267 10 HYSEEEHAVWNTLITRQLKLIEGRA--CQEYLDGIEQLGLPHDRIPDFDEINRKLQATTGWRIAAVPGLIPFQTFFEHLA 87 (248)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHh
Confidence 46889999999999888764 444 68888899988874 44577888776 4788999999999986
Q ss_pred cc
Q psy12589 70 TH 71 (149)
Q Consensus 70 ~~ 71 (149)
..
T Consensus 88 ~r 89 (248)
T TIGR01267 88 NR 89 (248)
T ss_pred cC
Confidence 43
No 193
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=58.86 E-value=24 Score=23.56 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=22.9
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 89 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 89 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
..+.+|+++.+++.+.+..-+..++.+++..+...-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 456789999999988888877778888888888764
No 194
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=58.22 E-value=24 Score=17.96 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHH
Q psy12589 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKK 50 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~ 50 (149)
.+|.+++..|...|.. +.++ +..+...+-..+|+ +...|..
T Consensus 6 ~~t~~q~~~L~~~f~~---~~~p-~~~~~~~la~~l~l--~~~~V~~ 46 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE---NPYP-SKEEREELAKELGL--TERQVKN 46 (57)
T ss_dssp SSSHHHHHHHHHHHHH---SSSC-HHHHHHHHHHHHTS--SHHHHHH
T ss_pred CCCHHHHHHHHHHHHH---hccc-cccccccccccccc--ccccccc
Confidence 5788999999888874 6667 67777666666655 3444444
No 195
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=58.06 E-value=26 Score=20.13 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=19.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
+|.|+.++.-.+-. .+-+.+.+..++... ...|....+-|...|.
T Consensus 27 n~~it~E~y~~V~a---~~T~qdkmRkLld~v--~akG~~~k~~F~~iL~ 71 (85)
T cd08324 27 NDYFSTEDAEIVCA---CPTQPDKVRKILDLV--QSKGEEVSEYFLYLLQ 71 (85)
T ss_pred cCCccHHHHHHHHh---CCCCHHHHHHHHHHH--HhcCchHHHHHHHHHH
Confidence 45555555544431 123444444444442 2334444444444443
No 196
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=57.65 E-value=15 Score=24.45 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
.+.++.+|..||+++=-.++.+++.++|...|+--....++.++..
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~N 99 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINN 99 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHH
Confidence 5679999999999888899999999999988865555555555444
No 197
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.19 E-value=46 Score=20.91 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH--hcCC-----CcCHHHHHHHHcccccCCC----------------CHHHHHHHHH
Q psy12589 30 DELSVIMRSLGMSPTIAELKKYLA--EKGG-----KLSFPDFLKVMHTHSKAED----------------IPKEVVDAFK 86 (149)
Q Consensus 30 ~~l~~~l~~~~~~~~~~~~~~~~~--~~~g-----~i~~~ef~~~~~~~~~~~~----------------~~~~~~~~f~ 86 (149)
..+.+++...+...+.+++..+++ +..| .+.+..|+..+....++.+ ...+++.+|.
T Consensus 19 n~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~ 98 (155)
T COG4807 19 NDLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFS 98 (155)
T ss_pred hHHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhh
Confidence 344555555566666666666665 2222 2334455555443333221 1245677776
Q ss_pred hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 87 AADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 87 ~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.-+ +++..++...+.+++..++..+|+.-+
T Consensus 99 lK~---------~Dm~~I~~~~~f~vS~pElsAlfR~~~ 128 (155)
T COG4807 99 LKT---------DDMLAILTEQQFRVSMPELSALFRAPD 128 (155)
T ss_pred ccc---------chHHHHHhccCcccccHHHHHHHhCCC
Confidence 544 358899999999999999999998864
No 198
>cd08808 CARD_CARD11_CARMA1 Caspase activation and recruitment domain of CARD11-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD11, also known as caspase recruitment domain-containing membrane-associated guanylate kinase protein 1 (CARMA1). CARMA1, together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), form the L-CBM signalosome (CBM complex in lymphoid immune cells) which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARMA1 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by as
Probab=56.62 E-value=13 Score=21.41 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=35.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCCC
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 149 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~~ 149 (149)
-|.|+..+..+++.+-........+..++... ...|.=.|.-|+..|.-.+|+.|
T Consensus 28 ~~Il~~~deEeI~s~~~~~~~~~k~g~LLDIL--~trG~~af~aFLeSLe~~yP~l~ 82 (86)
T cd08808 28 CKVIDEQDEDEVLNSPMLPSKINRAGRLLDIL--HTKGQRGYVVFLESLEFYYPELY 82 (86)
T ss_pred cCCCChhhHHHHHcCcccchHHHHHHHHHHHH--HhcCchHHHHHHHHHHhhCHHHH
Confidence 36667777777776554445555566666665 34566678888888886677643
No 199
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=55.82 E-value=74 Score=22.81 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCC----CCHHHHHHHHH--------hcCCCcCHHHHHHHHc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMS----PTIAELKKYLA--------EKGGKLSFPDFLKVMH 69 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~----~~~~~~~~~~~--------~~~g~i~~~ef~~~~~ 69 (149)
.-|+++.+.+..+|...-+- |+- +.++...+..+|+. +..+++...++ .-.|.|...+|...+.
T Consensus 26 ~YT~~e~~~W~~l~~r~~~~~~~~A--c~~yl~gl~~L~l~~d~IPql~~in~~L~~~TGw~~~pV~Glip~~~Ff~~LA 103 (275)
T PRK11913 26 DYTAEEHAIWQTLYERQLALLPGRA--CDEFLEGLEALGLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELLA 103 (275)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccc--CHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCccCCHHHHHHHHh
Confidence 36788999999999888764 444 68888889988874 45577888776 4788999999999986
Q ss_pred cc
Q psy12589 70 TH 71 (149)
Q Consensus 70 ~~ 71 (149)
..
T Consensus 104 ~r 105 (275)
T PRK11913 104 NR 105 (275)
T ss_pred cC
Confidence 43
No 200
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=54.53 E-value=36 Score=19.67 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
|+.+++.++-+.....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 56778888877777778888766665554
No 201
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=54.21 E-value=23 Score=23.58 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=25.2
Q ss_pred hccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCCcCHH
Q psy12589 20 FARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA-EKGGKLSFP 62 (149)
Q Consensus 20 ~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~g~i~~~ 62 (149)
+|++|.+ +.+++.+.++.-+..++.+++..+.. +..++..+.
T Consensus 27 ~d~~G~v-~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~ 69 (186)
T PF01885_consen 27 MDPDGWV-SVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELR 69 (186)
T ss_dssp --TT--E-EHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE
T ss_pred cCCCCCE-eHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEE
Confidence 4667999 99999998887777788999999887 444444443
No 202
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=53.76 E-value=39 Score=22.45 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=20.9
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 90 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 90 ~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
.|.+|++..+++.+.++.-+..++.+++.++...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 3556777777776666544445666666666555
No 203
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=53.74 E-value=26 Score=22.50 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=7.0
Q ss_pred CCcccHHHHHHHHH
Q psy12589 93 SGTVPAKYLKHVLV 106 (149)
Q Consensus 93 ~g~I~~~e~~~~l~ 106 (149)
+|.|+...|..+|+
T Consensus 97 n~~i~~~~ff~~lQ 110 (175)
T PF04876_consen 97 NGLIDIGKFFDILQ 110 (175)
T ss_pred ccceeHHHHHHHHH
Confidence 44455555555444
No 204
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=53.36 E-value=48 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.||.+.+..+|+..|..+.+..+..+++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 8999999999999999999999999988874
No 205
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.15 E-value=40 Score=22.05 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=9.5
Q ss_pred hcCCCCCcccHHHHHHHHH
Q psy12589 88 ADTTKSGTVPAKYLKHVLV 106 (149)
Q Consensus 88 ~D~~~~g~I~~~e~~~~l~ 106 (149)
|+...+-+||.++++++.+
T Consensus 21 YnT~TSTYVTL~dla~mVk 39 (193)
T COG5394 21 YNTGTSTYVTLEDLAQMVK 39 (193)
T ss_pred cccCCceeeeHHHHHHHHh
Confidence 3444444555555555554
No 206
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=53.13 E-value=14 Score=28.35 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=14.5
Q ss_pred hhcCCCCCcc--cHHHHHHHHHHhCCCC
Q psy12589 87 AADTTKSGTV--PAKYLKHVLVNWGEGL 112 (149)
Q Consensus 87 ~~D~~~~g~I--~~~e~~~~l~~~~~~~ 112 (149)
.||.+++..+ ...-|+.++..+|..+
T Consensus 359 ~FD~ERSD~VyKiLnKlK~v~st~~~~V 386 (445)
T PF13608_consen 359 MFDAERSDCVYKILNKLKGVFSTMGQDV 386 (445)
T ss_pred HhCchhhHHHHHHHHHHHHHHhccCCCc
Confidence 3455555433 3345777777777543
No 207
>PLN02223 phosphoinositide phospholipase C
Probab=53.07 E-value=39 Score=26.60 Aligned_cols=59 Identities=12% Similarity=-0.011 Sum_probs=40.7
Q ss_pred HHHHHHHHhhc-cCCCcCCHHHHHHHHHHc---C--CCCCHHHHHHHHH----h--------cCCCcCHHHHHHHHcc
Q psy12589 11 DEFRECFFLFA-RNGTIKTLDELSVIMRSL---G--MSPTIAELKKYLA----E--------KGGKLSFPDFLKVMHT 70 (149)
Q Consensus 11 ~~l~~~f~~~d-~~g~i~~~~~l~~~l~~~---~--~~~~~~~~~~~~~----~--------~~g~i~~~ef~~~~~~ 70 (149)
..++.+|..|. .+|.+ +...+.++|.-+ . ...+.++++.++. . ..+.++++.|..++..
T Consensus 16 ~~v~~~f~~~~~~~~~m-~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEFHGYDDD-MPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 45678899995 45899 999999988322 1 2445555555554 1 2356999999999865
No 208
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=51.74 E-value=20 Score=16.43 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=9.3
Q ss_pred CCcccHHHHHHHHHH
Q psy12589 93 SGTVPAKYLKHVLVN 107 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~ 107 (149)
.|.|+.+++.++...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466666666666554
No 209
>KOG4004|consensus
Probab=51.74 E-value=7.8 Score=26.18 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=10.7
Q ss_pred HHHHHhhcCCCCCcccHHHHH
Q psy12589 82 VDAFKAADTTKSGTVPAKYLK 102 (149)
Q Consensus 82 ~~~f~~~D~~~~g~I~~~e~~ 102 (149)
...|..+|.|++|+|+.+|..
T Consensus 225 ~~f~e~cd~~nd~~ial~ew~ 245 (259)
T KOG4004|consen 225 TRFFETCDLDNDKYIALDEWA 245 (259)
T ss_pred hhhhhcccCCCCCceeHHHhh
Confidence 344555555555555555544
No 210
>KOG2301|consensus
Probab=50.96 E-value=15 Score=32.77 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCCCCHHHHH--HHHH-----hcCCCcCHHHHHHHHcc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELK--KYLA-----EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~~~~~~~~--~~~~-----~~~g~i~~~ef~~~~~~ 70 (149)
.|++.+++.+.+++..+|++ |+| ...++...++.+..++.-..-+ +++. ..++.|++.+-+-.+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I-~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEI-PYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheee-eHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHHH
Confidence 48899999999999999987 899 9999999998874432111000 2222 47788998887777654
No 211
>KOG3555|consensus
Probab=50.66 E-value=22 Score=26.28 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWG---EGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 79 ~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
.+++..|+.+=.+.++......+..+-..+. .+....++-.||..+|.|.|+.++..|...+=
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 3567788888777777777766665544332 23556789999999999999999999886653
No 212
>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC. This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].
Probab=50.49 E-value=96 Score=22.56 Aligned_cols=19 Identities=11% Similarity=0.550 Sum_probs=17.2
Q ss_pred cccHHHHHHHHhcCCCCCC
Q psy12589 131 KVRYEDFVKIACAPVPDYY 149 (149)
Q Consensus 131 ~i~~~eF~~~l~~~~p~~~ 149 (149)
.+..++|...+....|++|
T Consensus 247 ~~~~~eFl~~Wk~~lP~~~ 265 (325)
T PF09724_consen 247 SFPLDEFLEAWKSSLPEFF 265 (325)
T ss_pred CCCHHHHHHHHHHhCCCcC
Confidence 7999999999999999865
No 213
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=50.32 E-value=31 Score=20.19 Aligned_cols=51 Identities=6% Similarity=0.041 Sum_probs=31.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCC
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDY 148 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~ 148 (149)
.|.|+.+|.-.+-.. ..+.+....++.... ..|.--+.-|++.|....|.+
T Consensus 35 ~~Vlt~ee~e~I~~~---~t~~~qAr~Lld~l~--~KG~~A~~~F~~~L~e~~~~L 85 (94)
T cd08329 35 ANVITEQEYDVIKQK---TQTPLQARELIDTVL--VKGNAAAEVFRNCLKKNDPVL 85 (94)
T ss_pred cCCCCHHHHHHHHcC---CChHHHHHHHHHHHH--hhhHHHHHHHHHHHHhcCHhH
Confidence 567777777555432 234456666666653 445667778888887666654
No 214
>PLN02230 phosphoinositide phospholipase C 4
Probab=50.24 E-value=1.1e+02 Score=24.56 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=41.7
Q ss_pred HHHHHHHHhhccC-CCcCCHHHHHHHHHHcCC---CCCHHHHHHHHH----h-------cCCCcCHHHHHHHHcc
Q psy12589 11 DEFRECFFLFARN-GTIKTLDELSVIMRSLGM---SPTIAELKKYLA----E-------KGGKLSFPDFLKVMHT 70 (149)
Q Consensus 11 ~~l~~~f~~~d~~-g~i~~~~~l~~~l~~~~~---~~~~~~~~~~~~----~-------~~g~i~~~ef~~~~~~ 70 (149)
.++..+|..|..+ +.+ +.++|..+|..-.. ..+.+.+..++. . ..+.++++.|..++..
T Consensus 29 ~ei~~lf~~~s~~~~~m-t~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGDAHM-SPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCCCcc-CHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4668889998654 789 99999999987642 234555555553 1 2346999999998754
No 215
>cd03348 pro_PheOH Prokaryotic phenylalanine-4-hydroxylase (pro_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes the eukaryotic proteins, phenylalanine-4-hydroxylase (eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan hydroxylase (TrpOH). PheOH catalyzes the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor.
Probab=50.18 E-value=84 Score=21.83 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCC----CCHHHHHHHHH--------hcCCCcCHHHHHHHHc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMS----PTIAELKKYLA--------EKGGKLSFPDFLKVMH 69 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~----~~~~~~~~~~~--------~~~g~i~~~ef~~~~~ 69 (149)
.-|++|.+.++.+|...-+- |+- +.++...+..+++. +..+++...++ ...|.|...+|...+.
T Consensus 10 ~YT~~e~~~W~~l~~r~~~~~~~~A--c~~yl~gl~~L~l~~d~IPql~~vn~~L~~~TGw~~~pV~Glip~~~Ff~~LA 87 (228)
T cd03348 10 DYTPEEHAVWRTLYERQAKLLPGRA--CDAFLEGLEKLGLPTDRIPDFADVSERLKAATGWTVVAVPGLIPDDEFFEHLA 87 (228)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhccc--CHHHHHHHHHcCCCCCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHh
Confidence 46889999999999888764 444 68888889888763 34577888776 4788999999999986
Q ss_pred cc
Q psy12589 70 TH 71 (149)
Q Consensus 70 ~~ 71 (149)
..
T Consensus 88 ~r 89 (228)
T cd03348 88 NR 89 (228)
T ss_pred cC
Confidence 53
No 216
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=49.78 E-value=38 Score=18.63 Aligned_cols=48 Identities=4% Similarity=0.106 Sum_probs=29.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCC
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPV 145 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~ 145 (149)
.|.++.++...+.... .+.+....++..... .|.=.|..|+..|....
T Consensus 25 ~~vlt~~e~~~i~~~~---~~~~k~~~Lld~l~~--kg~~af~~F~~~L~~~~ 72 (80)
T cd01671 25 DGVLTEEEYEKIRSES---TRQDKARKLLDILPR--KGPKAFQSFLQALQETD 72 (80)
T ss_pred cCCCCHHHHHHHHcCC---ChHHHHHHHHHHHHh--cChHHHHHHHHHHHhcC
Confidence 5777777776655432 255556666666643 34456777777776544
No 217
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=49.56 E-value=7.5 Score=24.50 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 94 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 94 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
-.||.+|++++.+.+...++. .+....=.+.|..|+|+.....|-.
T Consensus 8 ~~vTldevr~Av~~f~~~lp~----gi~rt~lv~~d~~iD~~~L~~yL~g 53 (140)
T PF13075_consen 8 VDVTLDEVRRAVHQFEEDLPK----GINRTILVNDDQSIDFERLAPYLGG 53 (140)
T ss_pred ccccHHHHHHHHHHHHHhCcc----CCceEEEEcCCceecHHHHhhhcCC
Confidence 346777777777665432221 1222222455666777666665544
No 218
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=49.47 E-value=45 Score=18.51 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHH
Q psy12589 5 FREQDIDEFRECFFLFARNGTIKTLDELSVIMRS 38 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~ 38 (149)
.+.++.......|...=..|.+ ..++|..++..
T Consensus 10 ~s~e~~~~~~~ql~Q~~~~Gkv-~~ee~n~~~e~ 42 (75)
T TIGR02675 10 ASAEEADGALIQLSQMLASGKL-RGEEINSLLEA 42 (75)
T ss_pred CCHHHHHHHHHHHHHHHHcCcc-cHHHHHHHHHH
Confidence 4566666666666666667888 88888887754
No 219
>KOG4070|consensus
Probab=49.00 E-value=23 Score=22.83 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=6.0
Q ss_pred ccHHHHHHHHHHh
Q psy12589 96 VPAKYLKHVLVNW 108 (149)
Q Consensus 96 I~~~e~~~~l~~~ 108 (149)
|+...+..+++.+
T Consensus 34 m~gkn~~KlcKdc 46 (180)
T KOG4070|consen 34 MNGKNWDKLCKDC 46 (180)
T ss_pred cccccHHHHHhhc
Confidence 4444444444444
No 220
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=48.95 E-value=87 Score=21.65 Aligned_cols=113 Identities=15% Similarity=0.264 Sum_probs=71.9
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHcCCC----CCHHHHHHHHH--------hcCCCcCHHHHHHHHc
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMS----PTIAELKKYLA--------EKGGKLSFPDFLKVMH 69 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~~~~----~~~~~~~~~~~--------~~~g~i~~~ef~~~~~ 69 (149)
..|+++.+.+..+|+..-+- |+- +.++...+..+++. +..+++...++ ...|.|...+|...+.
T Consensus 4 ~YT~~e~~~W~~l~~r~~~~~~~~A--c~~yl~gl~~l~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA 81 (221)
T cd00361 4 DYTEEEHATWRTLYRRLKKLLPTHA--CREYLEGLELLGLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLA 81 (221)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccc--CHHHHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHh
Confidence 46888999999999888764 444 68888889888753 45577777776 4788999999999986
Q ss_pred ccccCC-------------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---CCCCCH-HHHHHHHHh
Q psy12589 70 THSKAE-------------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSS-KEVDQIFRE 123 (149)
Q Consensus 70 ~~~~~~-------------~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~---~~~~~~-~~~~~~~~~ 123 (149)
...-.. ..++-+..+|-+. -.++-..|.+.++.+ |.+.++ +++..+-+.
T Consensus 82 ~r~Fp~t~~iR~~~~~~YtpEPDifHe~~GH~-----P~L~~p~fAdf~q~~G~~~l~a~~~~~~~~Larl 147 (221)
T cd00361 82 FRVFPVTQYIRHPEEPDYTPEPDIFHELFGHV-----PLLADPSFADFSQEYGLASLGASDLEEIEKLARL 147 (221)
T ss_pred cCCCceeeeecCcCCCCCCCCChhHHHHhccc-----hhhcCHHHHHHHHHHHHHHhCcCCHHHHHHHHHh
Confidence 533111 1234556666332 123333455555544 344444 555555444
No 221
>KOG4301|consensus
Probab=48.52 E-value=35 Score=25.20 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=41.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~ 140 (149)
....++|..+.|.++.--.+-+|.....+--.+.+..++.... |.+|-+.+-.|..+
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~f 170 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQF 170 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHH
Confidence 3455789999999999999999988654445567888888885 66775554444433
No 222
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.15 E-value=72 Score=20.42 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=54.4
Q ss_pred HHHHhhccCCCcCCHHHHHH---HHHHcCCCCCHHHHHHHHH----hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHh
Q psy12589 15 ECFFLFARNGTIKTLDELSV---IMRSLGMSPTIAELKKYLA----EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 87 (149)
Q Consensus 15 ~~f~~~d~~g~i~~~~~l~~---~l~~~~~~~~~~~~~~~~~----~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 87 (149)
-+|.....+|.+ +..+..+ +++. .+.++..++..++. -+...+++-.|...+........-.+-+..+|..
T Consensus 34 Llf~Vm~ADG~v-~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEADGTV-SESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhcccCc-CHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 678888889988 6666544 4432 33445666666665 3555788888888877644322112233445555
Q ss_pred hcCCCCCcccHHHHHHHHHH
Q psy12589 88 ADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 88 ~D~~~~g~I~~~e~~~~l~~ 107 (149)
.- .+|.++..|-.-+++.
T Consensus 112 a~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 112 AY--ADGELDESEDHVIWRV 129 (148)
T ss_pred HH--ccccccHHHHHHHHHH
Confidence 53 4678888777666654
No 223
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=47.74 E-value=86 Score=21.23 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=8.8
Q ss_pred CCCcCHHHHHHHHccc
Q psy12589 56 GGKLSFPDFLKVMHTH 71 (149)
Q Consensus 56 ~g~i~~~ef~~~~~~~ 71 (149)
+|.|+..++..++...
T Consensus 11 DGTITl~Ds~~~itdt 26 (220)
T COG4359 11 DGTITLNDSNDYITDT 26 (220)
T ss_pred CCceEecchhHHHHhc
Confidence 4556666655555443
No 224
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=47.71 E-value=57 Score=19.15 Aligned_cols=49 Identities=8% Similarity=0.187 Sum_probs=31.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCC
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVP 146 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p 146 (149)
++|.||.++...+-. .+-+.+.+..++..+ ..-|.--|..|+.+|.. +|
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiL--p~RG~~AF~~F~~aL~e-~~ 80 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDIL--PSRGPKAFHAFLDSLEE-FP 80 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHH--HhhChhHHHHHHHHHHH-HH
Confidence 357777777666653 234556667777665 34455678888888765 54
No 225
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=47.66 E-value=38 Score=17.15 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCcccHHHHHHHHHH-hCCCCCHHHHHHHHHh
Q psy12589 93 SGTVPAKYLKHVLVN-WGEGLSSKEVDQIFRE 123 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~ 123 (149)
.+.+|++.+..-|.. .|.++|.++++..+..
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 467999999999976 4788999998887654
No 226
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=46.97 E-value=47 Score=18.23 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNW----GEGLSSKEVDQIFREA 124 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 124 (149)
.+..+...++..-.--+-..+++.++..+ |...+++-++.+|+.|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 35555666654444456777888887765 5566777788888765
No 227
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=46.94 E-value=56 Score=18.86 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
|+.++++++.+.....+++++++.+...+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 77888888888877788887766665544
No 228
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=46.92 E-value=37 Score=16.83 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 98 AKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 98 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
.+|...+|..+| .++.++..+++.... ...++-++.++..
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 367788888888 788889998888854 3345666666543
No 229
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=45.55 E-value=54 Score=19.88 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 98 AKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 98 ~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
.+|++.++......+++++++.++..
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 44555555555445555555555544
No 230
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=45.28 E-value=88 Score=20.61 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHhhcc-CCCcCCHHHHHHHHHHcCCCC
Q psy12589 4 HFREQDIDEFRECFFLFAR-NGTIKTLDELSVIMRSLGMSP 43 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~-~g~i~~~~~l~~~l~~~~~~~ 43 (149)
.+.++-..++.++|..+-. ++-+ ...++-.++..|.++-
T Consensus 7 ki~~EiEDEILe~Ya~~~~~~~D~-~l~~Lp~~f~~L~IP~ 46 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTEDEQDM-TLKDLPNYFEDLQIPK 46 (170)
T ss_pred cCChHHHHHHHHHHHHhcCCccce-eHHHHHHHHHHcCCCh
Confidence 4566777888999988876 5778 8899999999887763
No 231
>KOG4286|consensus
Probab=43.66 E-value=43 Score=27.58 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 129 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 129 (149)
.+...++.||+.++|.|..-+|+-.+..+......+....+|+....++.
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s 520 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS 520 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh
Confidence 35667899999999999999999999888766677778899999864443
No 232
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=43.29 E-value=43 Score=23.48 Aligned_cols=33 Identities=6% Similarity=0.193 Sum_probs=25.4
Q ss_pred CcCCHHHHHHHHHHHHhhcc-CCCcCCHHHHHHHH
Q psy12589 3 HHFREQDIDEFRECFFLFAR-NGTIKTLDELSVIM 36 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~-~g~i~~~~~l~~~l 36 (149)
..||..|++.++.++..++. +|++ +..++...+
T Consensus 175 ~tLSySEleAv~~IL~~L~~~egrl-se~eLAerl 208 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGNEGLL-VASKIADRV 208 (251)
T ss_pred HhccHhHHHHHHHHHHHhccccccc-cHHHHHHHH
Confidence 35788888888888888888 4888 777776654
No 233
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=42.87 E-value=67 Score=18.75 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH---------hcCCCcCHHHHHHH
Q psy12589 30 DELSVIMRSLGMSPTIAELKKYLA---------EKGGKLSFPDFLKV 67 (149)
Q Consensus 30 ~~l~~~l~~~~~~~~~~~~~~~~~---------~~~g~i~~~ef~~~ 67 (149)
..++.+|+.-|+.++.+++..++. ...|.|+.+.+...
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 445566666688888877777665 35667777766554
No 234
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=42.83 E-value=43 Score=21.54 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
.+..-....|+.+.++||.+|++.+.-.+
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 35556777888888999999999887654
No 235
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=42.25 E-value=75 Score=18.98 Aligned_cols=44 Identities=9% Similarity=0.032 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~ 140 (149)
.+-.+|.+++..+++..|..+....+..+.+.+.. .+..+++..
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-----k~i~elIa~ 57 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALEG-----KDIKDLLSN 57 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHhhc
Confidence 34589999999999999998888888877777731 345555543
No 236
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification]
Probab=41.93 E-value=64 Score=22.37 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=40.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCH----------HHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCCC
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSS----------KEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 149 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~~ 149 (149)
.+--|...||.++|...|.-+++ -++-.+++.+..+ --.-.+++|...+..-.|.+|
T Consensus 135 e~~GI~v~eF~elLm~SGLvm~e~VtWitfHsaYDfgyLikilt~~-plP~~~EdFy~~l~~yfP~fY 201 (299)
T COG5228 135 ENLGIDVFEFSELLMDSGLVMDESVTWITFHSAYDFGYLIKILTND-PLPNNKEDFYWWLHQYFPNFY 201 (299)
T ss_pred hhcCCCHHHHHHHHhccCceeccceEEEEeecchhHHHHHHHHhcC-CCCccHHHHHHHHHHHCcccc
Confidence 34569999999999887754332 2466677776433 223467999999999889887
No 237
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=40.21 E-value=79 Score=18.66 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=47.8
Q ss_pred CCcCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy12589 24 GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103 (149)
Q Consensus 24 g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~ 103 (149)
..+ +..+.+++.+.+| +++.+++.+..+..... .++-.+++...... . ...=+...+.+
T Consensus 16 ~~~-~~~~wK~faR~lg--lse~~Id~I~~~~~~d~-~Eq~~qmL~~W~~~-------------~----G~~a~~~~Li~ 74 (97)
T cd08316 16 DVM-TLKDVKKFVRKSG--LSEPKIDEIKLDNPQDT-AEQKVQLLRAWYQS-------------H----GKTGAYRTLIK 74 (97)
T ss_pred HHc-CHHHHHHHHHHcC--CCHHHHHHHHHcCCCCh-HHHHHHHHHHHHHH-------------h----CCCchHHHHHH
Confidence 346 7788888889888 47788888766543332 55544444432211 1 11122467778
Q ss_pred HHHHhCCCCCHHHHHHHHH
Q psy12589 104 VLVNWGEGLSSKEVDQIFR 122 (149)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~ 122 (149)
+|+.++.....+.++.++.
T Consensus 75 aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 75 TLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHccchhHHHHHHHHHH
Confidence 8888887777777766654
No 238
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.14 E-value=51 Score=16.46 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=21.6
Q ss_pred CCCccc-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 92 KSGTVP-AKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 92 ~~g~I~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
..|.|+ ...+.+.|...|..++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 356776 444455555667788888888777653
No 239
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=40.07 E-value=79 Score=20.17 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH----------hhCCCCCCcccHHHHHHH
Q psy12589 100 YLKHVLVNWGEGLSSKEVDQIFR----------EANVTMNSKVRYEDFVKI 140 (149)
Q Consensus 100 e~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~g~i~~~eF~~~ 140 (149)
=+.+-...+|..++++++..++. .+-.+..|..+...|.++
T Consensus 94 ll~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 94 LLEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 34455556788888888777771 123456788887777654
No 240
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=39.61 E-value=43 Score=16.63 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcCCCCCHHHH
Q psy12589 28 TLDELSVIMRSLGMSPTIAEL 48 (149)
Q Consensus 28 ~~~~l~~~l~~~~~~~~~~~~ 48 (149)
+.+++..+.+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 678888888888998887765
No 241
>PF12266 DUF3613: Protein of unknown function (DUF3613); InterPro: IPR022053 This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.
Probab=39.49 E-value=15 Score=20.08 Aligned_cols=19 Identities=16% Similarity=0.726 Sum_probs=14.7
Q ss_pred cccHHHHHHHHhcCCCCCC
Q psy12589 131 KVRYEDFVKIACAPVPDYY 149 (149)
Q Consensus 131 ~i~~~eF~~~l~~~~p~~~ 149 (149)
.++|..+++....+.|+||
T Consensus 44 ~layqRYL~SF~~~IPe~f 62 (67)
T PF12266_consen 44 TLAYQRYLDSFKHPIPEFF 62 (67)
T ss_pred HHHHHHHHHHccCCCchHh
Confidence 3677788888888888876
No 242
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=39.40 E-value=44 Score=24.54 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=42.5
Q ss_pred HHHcCCCCCHHHHHHHHH----h--cCCCcCHHHHHHHHcccccCCCCHHHHHHHHH-----hhcCCCCCcccHHHHHHH
Q psy12589 36 MRSLGMSPTIAELKKYLA----E--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK-----AADTTKSGTVPAKYLKHV 104 (149)
Q Consensus 36 l~~~~~~~~~~~~~~~~~----~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~-----~~D~~~~g~I~~~e~~~~ 104 (149)
+.++.+.+.+++++.++. + ...-+-=++|-..+... ..+.+..|. .+-..-+|++--.|+.+-
T Consensus 31 m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l------~~e~r~~FidFLerScTaEFSGflLYKEl~rr 104 (351)
T CHL00185 31 MANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNL------DEKTKSLFVEFLERSCTAEFSGFLLYKELSRK 104 (351)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhC------CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 445667777777777776 2 11123333444433321 223444443 334555777777776665
Q ss_pred HHHhCCCCCHHHHHHHHHhhCCCC
Q psy12589 105 LVNWGEGLSSKEVDQIFREANVTM 128 (149)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~ 128 (149)
++.- ...+.++|..+.+|.
T Consensus 105 lk~~-----nP~lae~F~lMaRDE 123 (351)
T CHL00185 105 LKDK-----NPLLAEGFLLMSRDE 123 (351)
T ss_pred hccC-----CcHHHHHHHHHhhhh
Confidence 5432 134666777666554
No 243
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=39.12 E-value=63 Score=18.30 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q psy12589 100 YLKHVLVNWGEGLSSKEVDQIFR 122 (149)
Q Consensus 100 e~~~~l~~~~~~~~~~~~~~~~~ 122 (149)
|+..+|+.+|.++++++..-+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 56677888999999988655543
No 244
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=38.81 E-value=83 Score=18.51 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
.|+.++++++-+.....+++++.+.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 478888888888777778888777665554
No 245
>KOG0506|consensus
Probab=38.05 E-value=1.2e+02 Score=23.74 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---CC-----CCCCcccHHHHHHHHhc
Q psy12589 82 VDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA---NV-----TMNSKVRYEDFVKIACA 143 (149)
Q Consensus 82 ~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~---~~-----~~~g~i~~~eF~~~l~~ 143 (149)
..+|..+-...++.++.-.|..+|++.|..-++-.+..++..+ +. ...+.++.+-|.+++..
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 3467777555569999999999999999877776777776664 21 22356888888887654
No 246
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=38.02 E-value=57 Score=23.67 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=43.8
Q ss_pred HHHcCCCCCHHHHHHHHH----h--cCCCcCHHHHHHHHcccccCCCCHHHHHHHHH-----hhcCCCCCcccHHHHHHH
Q psy12589 36 MRSLGMSPTIAELKKYLA----E--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK-----AADTTKSGTVPAKYLKHV 104 (149)
Q Consensus 36 l~~~~~~~~~~~~~~~~~----~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~-----~~D~~~~g~I~~~e~~~~ 104 (149)
+.++.+.+.+++++.++. + ...-+-=++|-..+... ..+++..|. .+-..-+|++--.|+.+-
T Consensus 15 m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~------~~e~r~~FidFLerSctaEFSGflLYKEl~rr 88 (323)
T cd01047 15 MAALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKI------DPELRQIFLEFLERSCTSEFSGFLLYKELGRR 88 (323)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhC------CHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 445677777778877776 2 11123333444433331 123444443 344555777777777665
Q ss_pred HHHhCCCCCHHHHHHHHHhhCCCC
Q psy12589 105 LVNWGEGLSSKEVDQIFREANVTM 128 (149)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~ 128 (149)
++.- ...+.+++..+.+|.
T Consensus 89 lk~~-----nP~lae~F~lMaRDE 107 (323)
T cd01047 89 LKNT-----NPVVAELFRLMARDE 107 (323)
T ss_pred cccC-----CcHHHHHHHHHhhhH
Confidence 5432 134667777776554
No 247
>PRK08181 transposase; Validated
Probab=37.83 E-value=1.4e+02 Score=21.26 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCcCCHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCCcCHHHHHHHHc
Q psy12589 24 GTIKTLDELSVIMRSLGMSPTIAELKKYLA-EKGGKLSFPDFLKVMH 69 (149)
Q Consensus 24 g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~g~i~~~ef~~~~~ 69 (149)
..| +...+...+++++++--.+.+..+.. ...+..+|.+|+..+-
T Consensus 5 ~~~-~~~~l~~~l~~LkL~~~~~~~~~~~~~a~~~~~~~~e~L~~ll 50 (269)
T PRK08181 5 NVI-DEARLGLLLNELRLPTIKTLWPQFAEQADKEGWPAARFLAAIA 50 (269)
T ss_pred Ccc-cHHHHHHHHHHcCchHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 346 77778888998888754555555544 4556789999998763
No 248
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.26 E-value=1.4e+02 Score=20.28 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=17.8
Q ss_pred CCCCcccHHHHHHHHHHhCCCCC
Q psy12589 91 TKSGTVPAKYLKHVLVNWGEGLS 113 (149)
Q Consensus 91 ~~~g~I~~~e~~~~l~~~~~~~~ 113 (149)
+|-.+.+.+|++..|+.+|...-
T Consensus 66 ~gfly~~~eEL~e~Lk~~g~Rf~ 88 (210)
T COG1059 66 DGFLYLSEEELREKLKEVGYRFY 88 (210)
T ss_pred cccccCCHHHHHHHHHHhcchhc
Confidence 55667799999999999875433
No 249
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=35.42 E-value=1.2e+02 Score=19.49 Aligned_cols=55 Identities=13% Similarity=0.275 Sum_probs=35.5
Q ss_pred CcCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH--hcCCCcCHHH
Q psy12589 3 HHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA--EKGGKLSFPD 63 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~g~i~~~e 63 (149)
.++++.....++.++......|.+ ...++...|. . +...+..+++ ...|.|++..
T Consensus 2 ~~~s~~~edYL~~Iy~l~~~~~~~-~~~diA~~L~---V--sp~sVt~ml~rL~~~GlV~~~~ 58 (154)
T COG1321 2 AMLSETEEDYLETIYELLEEKGFA-RTKDIAERLK---V--SPPSVTEMLKRLERLGLVEYEP 58 (154)
T ss_pred CccchHHHHHHHHHHHHHhccCcc-cHHHHHHHhC---C--CcHHHHHHHHHHHHCCCeEEec
Confidence 456777888888888888877888 8888888763 2 3333333333 4445555543
No 250
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=35.41 E-value=92 Score=17.99 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=26.1
Q ss_pred CHHHHHHHHH---hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12589 44 TIAELKKYLA---EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 44 ~~~~~~~~~~---~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 107 (149)
+..+...+.+ +..-.|.+.+|...+........ ..+....=..+|-..+|+||.=||--..+-
T Consensus 5 TK~eA~~FW~~~Fg~r~IVPW~~F~~~L~~~h~~~~-~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 5 TKAEAAEFWKTSFGKRTIVPWSEFRQALQKVHPISS-GLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp SSHHHHHHHHHHHTT-SEEEHHHHHHHHHHHS--SS-HHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCeEeeHHHHHHHHHHhcCCCc-hHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 3344444444 23334555555555555433222 112222222345555555555555444433
No 251
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=35.32 E-value=64 Score=16.20 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHH
Q psy12589 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL 52 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~ 52 (149)
.++..++..|...|.. +.+. +..+...+-..+|+ +...|..-+
T Consensus 6 ~~~~~~~~~Le~~f~~---~~~P-~~~~~~~la~~~~l--~~~qV~~WF 48 (59)
T cd00086 6 RFTPEQLEELEKEFEK---NPYP-SREEREELAKELGL--TERQVKIWF 48 (59)
T ss_pred cCCHHHHHHHHHHHHh---CCCC-CHHHHHHHHHHHCc--CHHHHHHHH
Confidence 4678888888888887 5577 77777777777764 445555544
No 252
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=35.29 E-value=74 Score=16.98 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=13.2
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12589 83 DAFKAADTTKSGTVPAKYLKHVLVNWG 109 (149)
Q Consensus 83 ~~f~~~D~~~~g~I~~~e~~~~l~~~~ 109 (149)
.+++.++.+...-++.+|..+-....|
T Consensus 8 ~v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 8 EVLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 344444444444455555555555554
No 253
>COG5562 Phage envelope protein [General function prediction only]
Probab=35.07 E-value=29 Score=21.84 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=27.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+|.|...-.+.+..-. ...+. ..+...+..+..|..+|++|+..|..
T Consensus 54 ~~~Il~~g~k~~~~V~-~~~n~---~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 54 DGVILIKGVKKVVGVA-EVFNT---TLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred CCEEEeecccccccee-cccCH---HHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 5566555555444221 12233 33444445577899999999998764
No 254
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=35.05 E-value=52 Score=15.04 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHHhCCC
Q psy12589 95 TVPAKYLKHVLVNWGEG 111 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~ 111 (149)
.++..++++.++..|.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 46677788888777654
No 255
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.04 E-value=97 Score=18.17 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCC
Q psy12589 12 EFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTT 91 (149)
Q Consensus 12 ~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 91 (149)
.+...|..+-. .+ +..+.+.+.+.+|+ ++.++..+-.+..+. .++-.+++.. +-..
T Consensus 5 ~l~~~f~~i~~--~V-~~~~Wk~laR~LGL--se~~I~~i~~~~~~~--~eq~~qmL~~-----------------W~~~ 60 (96)
T cd08315 5 TLRRSFDHFIK--EV-PFDSWNRLMRQLGL--SENEIDVAKANERVT--REQLYQMLLT-----------------WVNK 60 (96)
T ss_pred HHHHHHHHHHH--HC-CHHHHHHHHHHcCC--CHHHHHHHHHHCCCC--HHHHHHHHHH-----------------HHHh
Confidence 34444444433 34 56778888888884 678888876654332 3333333322 2111
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 121 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 121 (149)
....=|...+.++|..++.....+.++..+
T Consensus 61 ~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 61 TGRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred hCCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 122345777888888888887777776654
No 256
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=34.39 E-value=75 Score=18.34 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=20.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIF 121 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 121 (149)
=|+.+..+|.+.|..+| +|.++++.++
T Consensus 60 iGy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 60 IGYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred CCCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 38888888888888877 7777776654
No 257
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=34.22 E-value=80 Score=20.32 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=25.9
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCC--CCcccHHHHHHHHHHh
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTK--SGTVPAKYLKHVLVNW 108 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~--~g~I~~~e~~~~l~~~ 108 (149)
+.+|.|+++.+...=+...+. ...+++-.|..+...+ ...++.+|+-+.+..+
T Consensus 64 D~NGnidye~ls~~eqee~k~--~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~eAL 118 (162)
T PF12207_consen 64 DKNGNIDYEKLSKEEQEEYKK--LTMELQPYFDKLNGHKSSKEVLTQEEYDQYIEAL 118 (162)
T ss_dssp -TTS-B-GGGS-HHHHHHHHH--HHHHHHHHHHHHTT---HHHHS-HHHHHHHHHHH
T ss_pred ccCCCcCHHhCCHHHHHHHHH--HHHhcchHHHHhcCCcchhhhcCHHHHHHHHHHH
Confidence 789999998766553332211 1223555566665433 2357777777766543
No 258
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=34.17 E-value=53 Score=24.21 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=43.7
Q ss_pred HHHcCCCCCHHHHHHHHH----h--cCCCcCHHHHHHHHcccccCCCCHHHHHHHHH-----hhcCCCCCcccHHHHHHH
Q psy12589 36 MRSLGMSPTIAELKKYLA----E--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK-----AADTTKSGTVPAKYLKHV 104 (149)
Q Consensus 36 l~~~~~~~~~~~~~~~~~----~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~-----~~D~~~~g~I~~~e~~~~ 104 (149)
+.++.+.+.+++++.++. + ...-+-=++|-..+... ..+.+.+|. .+-..-+|++--.|+.+-
T Consensus 35 m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l------~~e~r~~FidFLerSctaEFSGflLYKEl~rr 108 (355)
T PRK13654 35 MAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHL------DPETRKEFIDFLERSCTAEFSGFLLYKELSRR 108 (355)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhC------CHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 445677777777777776 2 11123333444433321 223444443 334555777777777665
Q ss_pred HHHhCCCCCHHHHHHHHHhhCCCC
Q psy12589 105 LVNWGEGLSSKEVDQIFREANVTM 128 (149)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~ 128 (149)
++.- ...+.++|..+.+|.
T Consensus 109 lk~~-----nP~lae~F~lMaRDE 127 (355)
T PRK13654 109 LKDR-----NPLLAELFQLMARDE 127 (355)
T ss_pred cccc-----CcHHHHHHHHHhhhH
Confidence 5432 235677777776554
No 259
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=34.12 E-value=55 Score=15.07 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHHhCCC
Q psy12589 95 TVPAKYLKHVLVNWGEG 111 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~ 111 (149)
.++..|+++.+...|.+
T Consensus 3 ~l~v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 3 KLTVAELKEELKERGLS 19 (35)
T ss_dssp TSHHHHHHHHHHHTTS-
T ss_pred cCcHHHHHHHHHHCCCC
Confidence 46677888888877754
No 260
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=34.11 E-value=79 Score=24.61 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHHhhccCC--CcCCHHHHHHHHHHcC
Q psy12589 4 HFREQDIDEFRECFFLFARNG--TIKTLDELSVIMRSLG 40 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~g--~i~~~~~l~~~l~~~~ 40 (149)
.|++-|..-+..+|+-.|.+| .| +..||+++|+.++
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLl-DLkDLra~l~~v~ 158 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLL-DLKDLRAMLQYVS 158 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccc-cHHHHHHHHHHHH
Confidence 467788888999999999987 46 9999999987653
No 261
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=33.77 E-value=1.1e+02 Score=18.40 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=28.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.||.+.+..+|...|..+....+..+.+.+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999999988999988884
No 262
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=33.71 E-value=78 Score=17.88 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=16.2
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhc
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAAD 89 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 89 (149)
+..+.++..+-...+.. .....+..+|..+.
T Consensus 49 n~~~~lt~~~~~~~i~~-----~d~~~~~ri~~FL~ 79 (86)
T PF04433_consen 49 NPNKYLTKTDARKLIKG-----IDVNKIRRIYDFLE 79 (86)
T ss_dssp HTTS---HHHHHHHTTS-----SSHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHccc-----cCHHHHHHHHHHHH
Confidence 56677777776666551 13455666666654
No 263
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=33.12 E-value=45 Score=21.78 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 77 IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 77 ~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
....+..++..+-..+...++..+|.+.+ -+|..+|+++++..+..+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 35567888888866666689999998876 456779999988877765
No 264
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=32.97 E-value=1.2e+02 Score=18.63 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
..|.++.+++.+-+..-+..++..++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367888888877776556667877777766654
No 265
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=32.69 E-value=33 Score=20.54 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=12.7
Q ss_pred CCCCcccHHHHHHHHhc-CCCCCC
Q psy12589 127 TMNSKVRYEDFVKIACA-PVPDYY 149 (149)
Q Consensus 127 ~~~g~i~~~eF~~~l~~-~~p~~~ 149 (149)
+.+|+....-|...-.+ ..|+||
T Consensus 18 ~~~g~~~~~~F~~lp~~~~~pdYy 41 (106)
T cd05521 18 EENGIEIHPIFNVLPLRKDYPDYY 41 (106)
T ss_pred CcCCCCchHhhhcCCccccCccHH
Confidence 34466666666654333 566665
No 266
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=32.42 E-value=59 Score=23.76 Aligned_cols=82 Identities=23% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHcCCCCCHHHHHHHHH----h--cCCCcCHHHHHHHHcccccCCCCHHHHHHHHH-----hhcCCCCCcccHHHHHHH
Q psy12589 36 MRSLGMSPTIAELKKYLA----E--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFK-----AADTTKSGTVPAKYLKHV 104 (149)
Q Consensus 36 l~~~~~~~~~~~~~~~~~----~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~-----~~D~~~~g~I~~~e~~~~ 104 (149)
+.++.+.+.+++++.++. + ...-+-=++|-..+... ..+.+..|- .+-..-+|++--.|+.+-
T Consensus 25 m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l------~~e~r~~FidFLerScTaEFSGflLYKEl~rr 98 (337)
T TIGR02029 25 MANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHI------DGELRQAFIEFLERSCTSEFSGFLLYKELSRR 98 (337)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhhC------CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 445677777778877776 2 11123333444433321 223444443 334555777777666655
Q ss_pred HHHhCCCCCHHHHHHHHHhhCCCC
Q psy12589 105 LVNWGEGLSSKEVDQIFREANVTM 128 (149)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~ 128 (149)
++. .+..+.++|..+.+|.
T Consensus 99 lk~-----~~P~lae~F~~MaRDE 117 (337)
T TIGR02029 99 LKN-----RDPVVAELFQLMARDE 117 (337)
T ss_pred cCC-----CChHHHHHHHHHhhhh
Confidence 533 2334677777776554
No 267
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=32.13 E-value=44 Score=18.59 Aligned_cols=17 Identities=35% Similarity=0.958 Sum_probs=10.2
Q ss_pred cHHHHHHHHhcC---CCCCC
Q psy12589 133 RYEDFVKIACAP---VPDYY 149 (149)
Q Consensus 133 ~~~eF~~~l~~~---~p~~~ 149 (149)
++++|+...... .||||
T Consensus 19 ~~~ef~~s~~~C~vtipD~~ 38 (72)
T PF15507_consen 19 DYNEFMRSQSGCIVTIPDYY 38 (72)
T ss_pred CHHHHHHHhccCcccCCCce
Confidence 556676665543 66664
No 268
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=31.55 E-value=1e+02 Score=21.42 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=33.2
Q ss_pred cHHHHHHHHHH----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 97 PAKYLKHVLVN----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 97 ~~~e~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
+.++++.+... .+..+++++++.+...+..=.+-.+++.+|...|..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 67777666553 467788888888877775555556778888777653
No 269
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=31.24 E-value=1e+02 Score=19.64 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.|.+++..+.......+|++++..++..++
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~ 56 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIG 56 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Confidence 466677766655555677777777777764
No 270
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=30.93 E-value=1.3e+02 Score=18.23 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~ 139 (149)
.||.+.+..+|...|..+....+..+.+.+.. .+.++.+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g-----kdIeElIa 55 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE-----VNIDEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 89999999999999999999889999888842 34455544
No 271
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=30.49 E-value=30 Score=20.27 Aligned_cols=85 Identities=7% Similarity=0.003 Sum_probs=41.5
Q ss_pred hcCCCcCHHHHHHHHccccc----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC--CC
Q psy12589 54 EKGGKLSFPDFLKVMHTHSK----AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN--VT 127 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~----~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~--~~ 127 (149)
..+|.++-.|-..+...... .......+...|+..-..- ...+..++...+... .++++...++...- ..
T Consensus 14 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~ia~ 89 (111)
T cd07176 14 AADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKL---LPPELRETAFAVAVDIAA 89 (111)
T ss_pred HhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 56888888886655444321 1233456666776654331 023334444444443 23445444443321 23
Q ss_pred CCCcccH--HHHHHHHh
Q psy12589 128 MNSKVRY--EDFVKIAC 142 (149)
Q Consensus 128 ~~g~i~~--~eF~~~l~ 142 (149)
.||.++- ..++..+.
T Consensus 90 aDG~~~~~E~~~L~~l~ 106 (111)
T cd07176 90 ADGEVDPEERAVLEKLY 106 (111)
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 4566655 34554443
No 272
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=30.37 E-value=51 Score=19.57 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=14.8
Q ss_pred CCCCcccHHHHHHHHh-cCCCCCC
Q psy12589 127 TMNSKVRYEDFVKIAC-APVPDYY 149 (149)
Q Consensus 127 ~~~g~i~~~eF~~~l~-~~~p~~~ 149 (149)
|.+|+....-|..... ...|+||
T Consensus 17 d~~gr~~~~~F~~lp~~~~~pdYy 40 (103)
T cd05517 17 DPSGRLISELFQKLPSKVLYPDYY 40 (103)
T ss_pred CcCCCChhHHHhcCCCCCCCCCHH
Confidence 4567777777777543 2467776
No 273
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=30.31 E-value=1.4e+02 Score=18.60 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHHhhccC---C-CcCCHHHHHHHH--HHcCCCCCHHHHHHHHH
Q psy12589 4 HFREQDIDEFRECFFLFARN---G-TIKTLDELSVIM--RSLGMSPTIAELKKYLA 53 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~---g-~i~~~~~l~~~l--~~~~~~~~~~~~~~~~~ 53 (149)
.+..++......+++.||-+ | -+ ...-+.+.- ..+|++++.+...-+..
T Consensus 55 ~vh~e~~~~~e~~Lr~FDl~~~yGPC~-GitRl~RW~RA~~lgL~PP~ev~~vL~~ 109 (124)
T PF04081_consen 55 RVHQEDLSQHEKILRQFDLSSQYGPCI-GITRLERWERAKRLGLNPPIEVLAVLLL 109 (124)
T ss_pred CcccchhhHHHHHHHHhccccccCCcc-CchHHHHHHHHHHcCCCCCHHHHHHHHh
Confidence 34455667777788888854 4 33 444555544 34788877666555544
No 274
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=29.92 E-value=96 Score=17.30 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=28.7
Q ss_pred CCcCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCC
Q psy12589 2 AHHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSP 43 (149)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~ 43 (149)
+.+||+.|+..|--++...+.--. ....+..+|+.+|-+.
T Consensus 5 t~~fTe~El~~L~Wlw~~~~~m~~--~~~~l~p~L~~lgS~~ 44 (74)
T PF10548_consen 5 TFQFTEEELQSLVWLWFAAERMRE--LCQELYPALKALGSNY 44 (74)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCCc
Confidence 357899999998888887765422 2477778888877654
No 275
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=29.91 E-value=1.7e+02 Score=19.99 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=24.6
Q ss_pred cCCCcCHHHHHHHHcccccCCC-----------CHHHHHHHHHhhcCCCCCcc
Q psy12589 55 KGGKLSFPDFLKVMHTHSKAED-----------IPKEVVDAFKAADTTKSGTV 96 (149)
Q Consensus 55 ~~g~i~~~ef~~~~~~~~~~~~-----------~~~~~~~~f~~~D~~~~g~I 96 (149)
..|.++|..++.-+..+..... ..+.+...-+.||++..|.|
T Consensus 174 d~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 174 DKGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred hcCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCce
Confidence 4578888888877765442211 11233444566777777754
No 276
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=29.87 E-value=1.1e+02 Score=17.20 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC-CCcccHHHHHHHH
Q psy12589 98 AKYLKHVLVNWGEGLSSKEVDQIFREANVTM-NSKVRYEDFVKIA 141 (149)
Q Consensus 98 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~eF~~~l 141 (149)
.+++.++| .|.+.+.+.+...+...+... =+.++-++|+..+
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 45555555 456677777877777774433 3467777777654
No 277
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=29.74 E-value=1e+02 Score=24.18 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhc-cCC-CcCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCC---CcCHHHHHHHHcccccCCCCHHHH
Q psy12589 7 EQDIDEFRECFFLFA-RNG-TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGG---KLSFPDFLKVMHTHSKAEDIPKEV 81 (149)
Q Consensus 7 ~~~~~~l~~~f~~~d-~~g-~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g---~i~~~ef~~~~~~~~~~~~~~~~~ 81 (149)
.+.++..-.+|...- ++| .+ +..++..++.++|......+--..+.+..+ .+.|..++..+...... .+.+
T Consensus 481 ~q~l~~~t~~f~h~lkk~~~~l-sdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel~D---~d~v 556 (612)
T COG5069 481 WQVLRSNTALFNHVLKKDGCGL-SDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSELVD---YDLV 556 (612)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHHHHHhhhhcC---hhhh
Confidence 344555566676664 344 57 899999999999987665554455554444 45666666666554432 3445
Q ss_pred HHHHHhhc
Q psy12589 82 VDAFKAAD 89 (149)
Q Consensus 82 ~~~f~~~D 89 (149)
...|..++
T Consensus 557 ~~~~~~f~ 564 (612)
T COG5069 557 TRGFTEFD 564 (612)
T ss_pred hhhHHHHH
Confidence 55555554
No 278
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=29.53 E-value=1.4e+02 Score=18.17 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=28.9
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
-|+.+.++.++...|..+.+..++.+...+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 8999999999999999999999999998884
No 279
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.33 E-value=1.2e+02 Score=18.56 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 97 PAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
|..|++.++..-+..+++++++.++...
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 5667777777777777777777776554
No 280
>PTZ00315 2'-phosphotransferase; Provisional
Probab=29.09 E-value=91 Score=24.97 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=31.2
Q ss_pred ccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH-hcCCCcCHH
Q psy12589 21 ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA-EKGGKLSFP 62 (149)
Q Consensus 21 d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~g~i~~~ 62 (149)
|.+|.+ +.+++.+..+.-+..++.+.+..+.+ +..++..+.
T Consensus 401 d~~Gwv-~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~ 442 (582)
T PTZ00315 401 TSNGYV-LLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLA 442 (582)
T ss_pred CCCCCE-EHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEe
Confidence 567999 89999988876666788999999998 444555543
No 281
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=29.05 E-value=99 Score=16.42 Aligned_cols=25 Identities=4% Similarity=0.027 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQI 120 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~ 120 (149)
.+.+++..+.+..|..++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3478888888899999998888764
No 282
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=28.93 E-value=1.7e+02 Score=19.03 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCC
Q psy12589 112 LSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDY 148 (149)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~ 148 (149)
+.-.++..++...+.+-.|.+-..+|++.+....|.|
T Consensus 107 lrVk~LK~iL~~~g~~C~GC~EK~dfv~ri~el~~k~ 143 (154)
T PF10208_consen 107 LRVKQLKKILDDWGEDCKGCLEKSDFVRRIEELKPKY 143 (154)
T ss_dssp TCHHHHHHHHHHHTTT-SS-CSHHHHHHHCHCCCCCC
T ss_pred CcHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhhc
Confidence 3344455555555566677777777777776655544
No 283
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.87 E-value=1.6e+02 Score=18.69 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=14.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHH
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEV 117 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~ 117 (149)
.+|.+++...+..-+..++...+
T Consensus 36 ~~sAeei~~~l~~~~p~islaTV 58 (145)
T COG0735 36 HLSAEELYEELREEGPGISLATV 58 (145)
T ss_pred CCCHHHHHHHHHHhCCCCCHhHH
Confidence 37777777776666655554443
No 284
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=28.76 E-value=76 Score=18.11 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=30.6
Q ss_pred CCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCc--ccHHHHHHHHH
Q psy12589 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT--VPAKYLKHVLV 106 (149)
Q Consensus 57 g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~--I~~~e~~~~l~ 106 (149)
-.++|.+.+..+....+. ....+|..=|.+|+.. -|-+|++.++.
T Consensus 21 ~~L~F~DvL~~I~~vlp~-----aT~tAFeYEDE~gDRITVRSDeEm~AMls 67 (91)
T cd06395 21 PQLLFRDVLDVIGQVLPE-----ATTTAFEYEDEDGDRITVRSDEEMKAMLS 67 (91)
T ss_pred ccccHHHHHHHHHHhccc-----ccccceeeccccCCeeEecchHHHHHHHH
Confidence 468888888887765543 3467888888887662 45566666664
No 285
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=28.69 E-value=2.3e+02 Score=20.62 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHc----CCC----CCHHHHHHHHH--------hcCCCcCHHHHHH
Q psy12589 5 FREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSL----GMS----PTIAELKKYLA--------EKGGKLSFPDFLK 66 (149)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~----~~~----~~~~~~~~~~~--------~~~g~i~~~ef~~ 66 (149)
-|++|.+.+..+|+..-+- ++- +.++...+..+ |+. +..+++...++ ...|.|+..+|..
T Consensus 60 YT~eE~~~W~~l~~r~~~l~~~~A--c~eyl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~ 137 (298)
T cd03345 60 YTAEEIATWKEVYKTLKDLHATHA--CKEYLDAFQLLEKECGYSEDRIPQLEDVSEFLKERTGFQLRPVAGLLSARDFLA 137 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHHH
Confidence 5788888899988887654 443 57777777766 543 34577888776 4778999999999
Q ss_pred HHcccccCC-------------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---CCCCCHHHHHHHHHhh
Q psy12589 67 VMHTHSKAE-------------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSKEVDQIFREA 124 (149)
Q Consensus 67 ~~~~~~~~~-------------~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~---~~~~~~~~~~~~~~~~ 124 (149)
.+....-.. ..++-+..+|-+. -.++-.+|.+.++.+ +.+-++++++.+-+.+
T Consensus 138 ~LA~R~Fp~t~yIR~~~~~~YtpEPDi~HEl~GHv-----PlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlY 206 (298)
T cd03345 138 SLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHV-----PMLADPTFAQFSQDIGLASLGASDEEIEKLSTLY 206 (298)
T ss_pred HHhcCcccccceecCCcccCCCCCCchHHHHhccc-----hhhCCHHHHHHHHHHHHHhcCCCHHHHHHHhHhh
Confidence 986533111 1234556666432 123334555555554 4567777777765553
No 286
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=28.53 E-value=1.3e+02 Score=17.44 Aligned_cols=79 Identities=9% Similarity=0.049 Sum_probs=37.1
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHhhCCCCC
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE----VDQIFREANVTMN 129 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 129 (149)
..+|.++-.|-..+-...............+...+..-....-+..++.+.+.... +.+++. +..++...- .|
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~r~~~l~~l~~vA~--AD 87 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRAC-GGRPELLLQLLEFLFQIAY--AD 87 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH--Hc
Confidence 46788888875554333222222222333444444332222355566666665532 244444 333444443 35
Q ss_pred CcccHH
Q psy12589 130 SKVRYE 135 (149)
Q Consensus 130 g~i~~~ 135 (149)
|.++-.
T Consensus 88 G~~~~~ 93 (106)
T cd07316 88 GELSEA 93 (106)
T ss_pred CCCCHH
Confidence 566554
No 287
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=28.33 E-value=67 Score=19.07 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=24.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHH---HHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEV---DQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.-.+|.+|+..++...|. .+-+ ...++....+....++-++.+..|..
T Consensus 33 ~~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~ 83 (105)
T cd03035 33 KDGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLE 83 (105)
T ss_pred cCCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHh
Confidence 345777777777776651 1111 11233333222234666777777665
No 288
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=28.27 E-value=1.2e+02 Score=17.21 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=30.5
Q ss_pred cHHHHHHHHHH----hCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q psy12589 97 PAKYLKHVLVN----WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIAC 142 (149)
Q Consensus 97 ~~~e~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~ 142 (149)
+...++++++. .|.+++++..+.+....-.++- ..++..+..+|.
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 34455555554 4788999888888888754444 677777777664
No 289
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.24 E-value=1.3e+02 Score=17.40 Aligned_cols=46 Identities=4% Similarity=0.056 Sum_probs=25.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~ 143 (149)
.|.+|.++...+-. .+.+.+....++..+ ..-|.--|..|+.+|..
T Consensus 32 ~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L--~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIMA---KPTSFSQNVALLNLL--PKRGPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHHc---CCCcHHHHHHHHHHH--HHhChhHHHHHHHHHHh
Confidence 46666666555442 223445555666654 33445567777777754
No 290
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=28.08 E-value=1.5e+02 Score=18.20 Aligned_cols=20 Identities=5% Similarity=0.240 Sum_probs=8.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHH
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKE 116 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~ 116 (149)
.|+.+.++.++..+. ++++.
T Consensus 83 ~it~~~l~~fI~~L~--ip~~~ 102 (115)
T PF08328_consen 83 KITKEDLREFIESLD--IPEEA 102 (115)
T ss_dssp ---HHHHHHHHHTSS--S-HHH
T ss_pred CCCHHHHHHHHHhCC--CCHHH
Confidence 566666666665555 44443
No 291
>KOG2303|consensus
Probab=27.63 E-value=3.2e+02 Score=21.82 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 97 PAKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
+-.=|.+.+..+|.++++.++.+-.+.
T Consensus 612 PysMF~kLl~~W~~klsp~qvaEKVk~ 638 (706)
T KOG2303|consen 612 PYSMFCKLLHQWGDKLSPRQVAEKVKR 638 (706)
T ss_pred cHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 444577788888888887775554333
No 292
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=27.37 E-value=1.8e+02 Score=18.84 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=32.3
Q ss_pred HHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 81 VVDAFKAA-DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 81 ~~~~f~~~-D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
+-..|..| +.+.+-+.+.+++.+-|...| +..++|...+..+
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL 47 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWL 47 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 45567766 444577889999999999999 7888888776665
No 293
>KOG3449|consensus
Probab=27.18 E-value=1.5e+02 Score=18.00 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=39.4
Q ss_pred HHHHhhccCC--CcCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCcCHHHHHHH
Q psy12589 15 ECFFLFARNG--TIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKV 67 (149)
Q Consensus 15 ~~f~~~d~~g--~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 67 (149)
..|-.....| .. +..+++.+|...|.....+.++.+++.-+|+ +.+|.+.-
T Consensus 5 aAYLL~~lgGn~~p-sa~DikkIl~sVG~E~d~e~i~~visel~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 5 AAYLLAVLGGNASP-SASDIKKILESVGAEIDDERINLVLSELKGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHhcCCCCC-CHHHHHHHHHHhCcccCHHHHHHHHHHhcCC-CHHHHHHH
Confidence 3444445433 56 7899999999999999999999999977777 78887665
No 294
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=27.17 E-value=86 Score=18.82 Aligned_cols=10 Identities=0% Similarity=0.125 Sum_probs=4.1
Q ss_pred ccHHHHHHHH
Q psy12589 96 VPAKYLKHVL 105 (149)
Q Consensus 96 I~~~e~~~~l 105 (149)
++..|..+++
T Consensus 71 L~~~E~~qi~ 80 (117)
T PF03874_consen 71 LTEFEILQII 80 (117)
T ss_dssp S-HHHHHHHH
T ss_pred CCHHHHHHHh
Confidence 4444444444
No 295
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.93 E-value=1.3e+02 Score=17.04 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQI 120 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~ 120 (149)
.|+....++.++.+| +++.+++..
T Consensus 8 ~VP~~~wk~F~R~LG--Lsdn~Ie~~ 31 (77)
T cd08815 8 AVPARRWKEFVRTLG--LREAEIEAV 31 (77)
T ss_pred cCChHHHHHHHHHcC--CcHhHHHHH
Confidence 466777777777777 565554443
No 296
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=26.57 E-value=1.2e+02 Score=16.62 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 81 VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 81 ~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
+..+|-.+=....+.|+...+..++..+| +++..+...+..+
T Consensus 6 i~tl~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl 47 (70)
T PF07848_consen 6 IVTLLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRL 47 (70)
T ss_dssp HHHHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHH
T ss_pred hHHHHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 44556555666779999999999999998 7777777766665
No 297
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=26.40 E-value=16 Score=20.55 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=21.2
Q ss_pred hCC-CCCHHHHHHHHHhhCCCCCCccc-HHHHHHHHhcCCCCCC
Q psy12589 108 WGE-GLSSKEVDQIFREANVTMNSKVR-YEDFVKIACAPVPDYY 149 (149)
Q Consensus 108 ~~~-~~~~~~~~~~~~~~~~~~~g~i~-~~eF~~~l~~~~p~~~ 149 (149)
+|. .+++++-..++.-- .+++-.|. .-|.+.-.....|+||
T Consensus 27 LGf~~Lt~eEr~dmI~~~-~~G~i~V~~iCe~C~eaL~~nPe~~ 69 (76)
T PF10955_consen 27 LGFHHLTPEERQDMISYD-ENGDIHVKVICEDCQEALERNPEYH 69 (76)
T ss_pred cCcccCCHHHHhhheEEc-CCCCEEEEEecHHHHHHHHhCcchh
Confidence 453 47877777766543 23332221 1244444444488875
No 298
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=26.18 E-value=1.3e+02 Score=16.99 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=31.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCCCC
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPDYY 149 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l~~~~p~~~ 149 (149)
.+.++.+|...+..... ...+....++... -..|..-..-|++.+....|..|
T Consensus 28 ~~Vl~~~E~e~i~~~~~--t~~dkar~Lid~v--~~KG~~A~~iF~~~L~~~d~~l~ 80 (83)
T cd08325 28 KNVLNEEEMEKIKEENN--TIMDKARVLVDSV--TEKGQEAGQIFIKHLLNRDKQLS 80 (83)
T ss_pred cCCCCHHHHHHHHhccC--CHHHHHHHHHHHH--HHHhHHHHHHHHHHHHhcChhhh
Confidence 36777777776665422 2344555565555 23455667778887777666543
No 299
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.60 E-value=1.3e+02 Score=16.75 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12589 28 TLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN 107 (149)
Q Consensus 28 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~ 107 (149)
+..+.+.+.+.+|+ ++.++..+-.+..+ .-++ ...++..+=......=|.+.+.++|..
T Consensus 10 ~~~~Wk~laR~LGl--s~~~I~~ie~~~~~--~~eq-----------------~~~mL~~W~~k~G~~At~~~L~~aL~~ 68 (79)
T cd08784 10 PFDQHKRFFRKLGL--SDNEIKVAELDNPQ--HRDR-----------------VYELLRIWRNKEGRKATLNTLIKALKD 68 (79)
T ss_pred CHHHHHHHHHHcCC--CHHHHHHHHHcCCc--hHHH-----------------HHHHHHHHHhccCcCcHHHHHHHHHHH
Confidence 67778888888875 56777776554333 2222 233333331111224467778888888
Q ss_pred hCCCCCHH
Q psy12589 108 WGEGLSSK 115 (149)
Q Consensus 108 ~~~~~~~~ 115 (149)
+|...+.+
T Consensus 69 ~~~~~~Ae 76 (79)
T cd08784 69 LDQRRTAE 76 (79)
T ss_pred cccHhHHH
Confidence 77554443
No 300
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.53 E-value=1.8e+02 Score=18.30 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 84 AFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 84 ~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
+++.+-...++.+|.+|+.+.+..-+..++...+=..+..+
T Consensus 22 Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 22 ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 44444333456788888888888777666655444444443
No 301
>PHA02771 hypothetical protein; Provisional
Probab=25.32 E-value=1.5e+02 Score=17.29 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHhh
Q psy12589 112 LSSKEVDQIFREA 124 (149)
Q Consensus 112 ~~~~~~~~~~~~~ 124 (149)
++.++.+++++..
T Consensus 32 ite~ey~ELi~n~ 44 (90)
T PHA02771 32 VSYNQFEEIIKDG 44 (90)
T ss_pred ecHHHHHHHHcCC
Confidence 4444555555444
No 302
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=25.26 E-value=1.4e+02 Score=16.91 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy12589 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFR 122 (149)
Q Consensus 95 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 122 (149)
.|+..+.+++.+.+| +++.+|+.+-.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 356666777777776 66666655543
No 303
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=25.07 E-value=1.2e+02 Score=16.12 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=5.7
Q ss_pred CcccHHHHHHHHHH
Q psy12589 94 GTVPAKYLKHVLVN 107 (149)
Q Consensus 94 g~I~~~e~~~~l~~ 107 (149)
|.++..++..+|..
T Consensus 30 g~~s~~qiaAfL~a 43 (66)
T PF02885_consen 30 GEVSDAQIAAFLMA 43 (66)
T ss_dssp TSS-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444444443
No 304
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=25.01 E-value=85 Score=14.34 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
|+.+|+.+.+ | ++.+.+..+++.+.
T Consensus 3 mtr~diA~~l---G--~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYL---G--LTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHH---T--S-HHHHHHHHHHHH
T ss_pred cCHHHHHHHh---C--CcHHHHHHHHHHHH
Confidence 5677777766 4 67777777777653
No 305
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=24.86 E-value=1.5e+02 Score=17.04 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
|+..||...+..-...++..++..++..
T Consensus 1 mtk~eli~~ia~~~~~~s~~~~~~vv~~ 28 (94)
T PRK00199 1 MTKSELIERLAARNPHLSAKDVENAVKE 28 (94)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566676666553333566555554444
No 306
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.79 E-value=1.3e+02 Score=16.21 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=26.1
Q ss_pred CcCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH--hcCCCc
Q psy12589 3 HHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA--EKGGKL 59 (149)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~g~i 59 (149)
..||+.|.+-|.-+-..+..+|+--+..|+.. .+|+. |..-+...++ ...|.|
T Consensus 2 ~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~---~~g~~-S~~tv~~~L~~Le~kG~I 56 (65)
T PF01726_consen 2 KELTERQKEVLEFIREYIEENGYPPTVREIAE---ALGLK-STSTVQRHLKALERKGYI 56 (65)
T ss_dssp ----HHHHHHHHHHHHHHHHHSS---HHHHHH---HHTSS-SHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHH---HhCCC-ChHHHHHHHHHHHHCcCc
Confidence 45777787666666666667776413445544 44655 4444444443 344544
No 307
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.76 E-value=1.2e+02 Score=19.84 Aligned_cols=6 Identities=33% Similarity=0.855 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy12589 63 DFLKVM 68 (149)
Q Consensus 63 ef~~~~ 68 (149)
||++.+
T Consensus 5 efL~~L 10 (181)
T PF08006_consen 5 EFLNEL 10 (181)
T ss_pred HHHHHH
Confidence 333333
No 308
>PHA02943 hypothetical protein; Provisional
Probab=24.68 E-value=2.1e+02 Score=18.70 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=56.8
Q ss_pred CCCcCCHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH--hcCCCcCH-------------HHHH
Q psy12589 1 MAHHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA--EKGGKLSF-------------PDFL 65 (149)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~g~i~~-------------~ef~ 65 (149)
|.+..|+.-.+++.++...+ +.|.- +..++.+.+ |+ |..+++-++. ...|.|.- +++.
T Consensus 1 MPr~~sd~v~~R~~eILE~L-k~G~~-TtseIAkaL---Gl--S~~qa~~~LyvLErEG~VkrV~~G~~tyw~l~~day~ 73 (165)
T PHA02943 1 MPRGMSDTVHTRMIKTLRLL-ADGCK-TTSRIANKL---GV--SHSMARNALYQLAKEGMVLKVEIGRAAIWCLDEDAYT 73 (165)
T ss_pred CCcchhHHHHHHHHHHHHHH-hcCCc-cHHHHHHHH---CC--CHHHHHHHHHHHHHcCceEEEeecceEEEEEChHHHH
Confidence 66778888888888888888 77877 777877665 44 4445544443 44444322 2222
Q ss_pred HHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy12589 66 KVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV 106 (149)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~ 106 (149)
+.+ .+-++.+++..-.++-.+|+...+.+.+.
T Consensus 74 ~~v---------~~~~Relwrlv~s~~~kfi~p~~l~~li~ 105 (165)
T PHA02943 74 NLV---------FEIKRELWRLVCNSRLKFITPSRLLRLIA 105 (165)
T ss_pred HHH---------HHHHHHHHHHHHhccccccChHHHHHHHH
Confidence 221 12245566666666777888888887774
No 309
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=24.63 E-value=1.6e+02 Score=17.97 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 97 PAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
+.++.+.++..+...+++++++.++...
T Consensus 84 s~~E~~~lI~sl~~r~~ee~l~~iL~~i 111 (118)
T smart00657 84 TAEEAQLLIPSLEERIDEEELEELLDDL 111 (118)
T ss_pred CHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 3444555555555455555655555543
No 310
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=24.48 E-value=27 Score=23.02 Aligned_cols=8 Identities=75% Similarity=1.609 Sum_probs=6.5
Q ss_pred hcCCCCCC
Q psy12589 142 CAPVPDYY 149 (149)
Q Consensus 142 ~~~~p~~~ 149 (149)
.++.||||
T Consensus 138 sNPvPDYY 145 (173)
T PF08566_consen 138 SNPVPDYY 145 (173)
T ss_pred CCCCCchh
Confidence 46799998
No 311
>PF14164 YqzH: YqzH-like protein
Probab=24.39 E-value=1.3e+02 Score=16.31 Aligned_cols=29 Identities=0% Similarity=0.055 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCC-CCCcccHHHHHHHHHHh
Q psy12589 80 EVVDAFKAADTT-KSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 80 ~~~~~f~~~D~~-~~g~I~~~e~~~~l~~~ 108 (149)
.++.+|+.|..| ..-.++..|++.+...+
T Consensus 9 mi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 467888888776 45567777777766554
No 312
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.25 E-value=83 Score=14.18 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=4.6
Q ss_pred ccHHHHHHHHH
Q psy12589 96 VPAKYLKHVLV 106 (149)
Q Consensus 96 I~~~e~~~~l~ 106 (149)
||.+|+++.|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45555555543
No 313
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=24.13 E-value=1.6e+02 Score=19.35 Aligned_cols=21 Identities=5% Similarity=-0.027 Sum_probs=16.1
Q ss_pred CCcCCHHHHHHHHHHHHhhcc
Q psy12589 2 AHHFREQDIDEFRECFFLFAR 22 (149)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~ 22 (149)
...++++.++++..+...|..
T Consensus 13 ~~~~~~~~~~~i~~ii~~~~~ 33 (169)
T PRK07571 13 THPSGDKRFKVLEATMKRNQY 33 (169)
T ss_pred cCcCcHHHHHHHHHHHHHcCC
Confidence 456788888888888888763
No 314
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=24.10 E-value=1e+02 Score=16.65 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=25.3
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhC
Q psy12589 85 FKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREAN 125 (149)
Q Consensus 85 f~~~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~ 125 (149)
|..+.....|.++..+...+-.-+. .+++++-+..++...-
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~ 43 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYAL 43 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555555567777777777666554 2567777777777764
No 315
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=24.04 E-value=3e+02 Score=20.21 Aligned_cols=114 Identities=13% Similarity=0.192 Sum_probs=70.1
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHH----HHcCCC----CCHHHHHHHHH--------hcCCCcCHHHHH
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIM----RSLGMS----PTIAELKKYLA--------EKGGKLSFPDFL 65 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l----~~~~~~----~~~~~~~~~~~--------~~~g~i~~~ef~ 65 (149)
.-|++|.+.+..+|...-+- ++- +.++...+ +.+|+. +..+++...++ ...|.|+..+|.
T Consensus 60 ~YT~eE~~~W~~l~~r~~~l~~~~A--c~eyl~~l~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff 137 (306)
T cd03347 60 EYTEEEKKTWGTVFRELKSLYPTHA--CYEYNHVFPLLEKNCGFSEDNIPQLEDVSNFLQTCTGFRLRPVAGLLSSRDFL 137 (306)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhcCCCcCCCCCHHHHHHHHHhccCCEEEecCccCCHHHHH
Confidence 35788999999999887653 443 45555544 444654 44577888776 477899999999
Q ss_pred HHHcccccCC-------------CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---CCCCCHHHHHHHHHhh
Q psy12589 66 KVMHTHSKAE-------------DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSKEVDQIFREA 124 (149)
Q Consensus 66 ~~~~~~~~~~-------------~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~---~~~~~~~~~~~~~~~~ 124 (149)
..+....-.. ..++-+..+|-.. -.++-..|.+.++.+ +.+-++++++.+-+.+
T Consensus 138 ~~LA~R~Fp~t~yIR~~~~~~YtpEPDifHEl~GHv-----PlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlY 207 (306)
T cd03347 138 AGLAFRVFHSTQYIRHPSKPMYTPEPDICHELLGHV-----PLFADPSFAQFSQEIGLASLGAPDEYIEKLATVY 207 (306)
T ss_pred HHHhcCccceeeeecCccccCCCCCCchHHHHhccc-----hhhcCHHHHHHHHHHHHHhcCCCHHHHHHHhhhe
Confidence 9986433111 1234556666332 123334555555544 4567777777766554
No 316
>KOG2351|consensus
Probab=24.02 E-value=1.2e+02 Score=18.97 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12589 97 PAKYLKHVLVNWGEGLSSKEVDQIFREA 124 (149)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (149)
+.+|-+.+..+++.++++++++.+++.+
T Consensus 100 taEEAkaLvPSL~nkidD~~le~iL~dl 127 (134)
T KOG2351|consen 100 TAEEAKALVPSLENKIDDDELEQILKDL 127 (134)
T ss_pred cHHHHHHhccccccccCHHHHHHHHHHH
Confidence 4555555666666666777777666654
No 317
>KOG4403|consensus
Probab=23.96 E-value=1.4e+02 Score=23.08 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=33.1
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
+.+|.|+.+|--.+++.-.+-.+...+=...|.- .+-.||.+++..++...
T Consensus 80 D~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 80 DHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKES 130 (575)
T ss_pred ccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHhh
Confidence 7889999988666665543333322223335532 35789999999998764
No 318
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=23.96 E-value=60 Score=15.60 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=9.0
Q ss_pred CCcccHHHHHHHH
Q psy12589 93 SGTVPAKYLKHVL 105 (149)
Q Consensus 93 ~g~I~~~e~~~~l 105 (149)
-|.||.+|+..+.
T Consensus 24 ~g~IT~eey~eIT 36 (40)
T PF09693_consen 24 AGWITKEEYKEIT 36 (40)
T ss_pred cCeECHHHHHHhh
Confidence 4777777777654
No 319
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=23.77 E-value=1.9e+02 Score=19.81 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=34.7
Q ss_pred hcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q psy12589 54 EKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV 126 (149)
Q Consensus 54 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 126 (149)
...|.|+-++|...+....... ..++ -.-....++.++-..+++.+- -....++.++..|+.
T Consensus 37 ak~G~Id~~e~kkav~~liEAd------e~lY---ksaP~H~L~~E~AkeFck~l~--~~~k~l~~iL~~FG~ 98 (215)
T PF09873_consen 37 AKPGKIDVEEFKKAVYSLIEAD------EYLY---KSAPSHELNGEEAKEFCKLLF--KAQKHLDKILSDFGF 98 (215)
T ss_pred CCCCcccHHHHHHHHHHHHHHH------HHHH---hcCCcccccHhHHHHHHHHHH--HHHHHHHHHHHHcCc
Confidence 4677888888887777654211 1122 223456666666666555542 234556666666643
No 320
>cd08806 CARD_CARD14_CARMA2 Caspase activation and recruitment domain of CARD14-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD14, also known as BIMP2 or CARMA2 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 2). CARD14 has been identified as a novel member of the MAGUK (membrane-associated guanylate kinase) family that functions as upstream activators of BCL10 (B-cell lymphoma 10) and NF-kB signaling. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways
Probab=23.39 E-value=43 Score=19.33 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=15.6
Q ss_pred CCCcccHHHHHHHHhcCCCCCC
Q psy12589 128 MNSKVRYEDFVKIACAPVPDYY 149 (149)
Q Consensus 128 ~~g~i~~~eF~~~l~~~~p~~~ 149 (149)
..|.=.|.-|+..|.-.+|+.|
T Consensus 61 trG~~g~~aFLeSLe~~yP~ly 82 (86)
T cd08806 61 TRGKNGAIAFLESLKFHNPDVY 82 (86)
T ss_pred hcCchHHHHHHHHHHHHCHHHH
Confidence 3456678888888886677643
No 321
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=23.38 E-value=94 Score=21.14 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.6
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh
Q psy12589 84 AFKAADTTKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 84 ~f~~~D~~~~g~I~~~e~~~~l~~~ 108 (149)
+..-+|.+++|.++.+|+.++....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 4446899999999999999887754
No 322
>KOG0403|consensus
Probab=23.29 E-value=3.8e+02 Score=21.19 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCcCHHHHHHHHcccccCCCCHHHHHHHHHhhcC
Q psy12589 11 DEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADT 90 (149)
Q Consensus 11 ~~l~~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~ 90 (149)
.++......|--.|.| .+-.++++.+|.++...++..- ..+..+...-......+-++.+|
T Consensus 510 dkI~~LLeEY~~~Gdi---sEA~~CikeLgmPfFhHEvVkk-----------AlVm~mEkk~d~t~~ldLLk~cf----- 570 (645)
T KOG0403|consen 510 DKIDMLLEEYELSGDI---SEACHCIKELGMPFFHHEVVKK-----------ALVMVMEKKGDSTMILDLLKECF----- 570 (645)
T ss_pred HHHHHHHHHHHhccch---HHHHHHHHHhCCCcchHHHHHH-----------HHHHHHHhcCcHHHHHHHHHHHH-----
Confidence 4555555566666755 6778888999888776654331 11111111100000011244455
Q ss_pred CCCCcccHHHHHHHHHHh
Q psy12589 91 TKSGTVPAKYLKHVLVNW 108 (149)
Q Consensus 91 ~~~g~I~~~e~~~~l~~~ 108 (149)
+.|.||..++.+-+..+
T Consensus 571 -~sglIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 571 -KSGLITTNQMTKGFERV 587 (645)
T ss_pred -hcCceeHHHhhhhhhhh
Confidence 47999999988887765
No 323
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=23.21 E-value=2e+02 Score=19.12 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=17.0
Q ss_pred CCCCCcccHHHHHHHHHHhCC
Q psy12589 90 TTKSGTVPAKYLKHVLVNWGE 110 (149)
Q Consensus 90 ~~~~g~I~~~e~~~~l~~~~~ 110 (149)
.||+|.+.+-=+..+|...|.
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGY 146 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCC
Confidence 478899888888888888775
No 324
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=23.15 E-value=1.5e+02 Score=16.46 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHh
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-GEGLSSKEVDQIFRE 123 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 123 (149)
.+.++.-|... -+.|+..|+..+-+.+ ..+++.+++..++..
T Consensus 15 ~e~vk~~F~~~----~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 15 PEEVKEEFKKL----FSDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred HHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 44455554432 2445566665554432 233666666665544
No 325
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=23.12 E-value=1.3e+02 Score=16.89 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCCCCCC
Q psy12589 100 YLKHVLVNWGEGLSSKEVDQIFREANVTMNS 130 (149)
Q Consensus 100 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 130 (149)
.+...+.++|.+-+++.|+.++.......+-
T Consensus 7 ~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~~ 37 (74)
T PF10982_consen 7 TLSNLFAQLGLDSSDEAIEAFIETHQLPADV 37 (74)
T ss_dssp HHHHHHHHHTS---HHHHHHHHHHS---TTS
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHhCCCCCCC
Confidence 4666777888888888888888887654443
No 326
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=22.77 E-value=1.5e+02 Score=17.88 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=15.0
Q ss_pred HcCCCCCHHHHHHHHH--hcCCCcCHHHHHHHHcc
Q psy12589 38 SLGMSPTIAELKKYLA--EKGGKLSFPDFLKVMHT 70 (149)
Q Consensus 38 ~~~~~~~~~~~~~~~~--~~~g~i~~~ef~~~~~~ 70 (149)
..|+.+++.++...+. -....++.++|...+..
T Consensus 62 ~~gI~vsd~evd~~i~~ia~~n~ls~~ql~~~L~~ 96 (118)
T PF09312_consen 62 RLGIKVSDEEVDEAIANIAKQNNLSVEQLRQQLEQ 96 (118)
T ss_dssp HCT----HHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4577777777666555 22334466666665544
No 327
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=22.69 E-value=73 Score=19.00 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=11.2
Q ss_pred CCCcccHHHHHHHHHHhC
Q psy12589 92 KSGTVPAKYLKHVLVNWG 109 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~ 109 (149)
.+|.|++++|.+.|.++.
T Consensus 3 ~d~~~~~~~F~~~W~sl~ 20 (114)
T PF09066_consen 3 EDGSMDPEEFQEMWKSLP 20 (114)
T ss_dssp TT----HHHHHHHHHHS-
T ss_pred CCCccCHHHHHHHHHhCC
Confidence 369999999999999864
No 328
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=22.67 E-value=1.7e+02 Score=17.46 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=9.0
Q ss_pred ccCCCcCCHHHHHHHHHHcCCC
Q psy12589 21 ARNGTIKTLDELSVIMRSLGMS 42 (149)
Q Consensus 21 d~~g~i~~~~~l~~~l~~~~~~ 42 (149)
.++|.- +...+.++++.+|+.
T Consensus 71 S~~GNP-tf~Til~V~kAlG~r 91 (100)
T COG3636 71 SPGGNP-TFDTILAVLKALGLR 91 (100)
T ss_pred CCCCCC-cHHHHHHHHHHcCce
Confidence 333444 344444444444443
No 329
>COG2879 Uncharacterized small protein [Function unknown]
Probab=22.52 E-value=86 Score=16.95 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=7.8
Q ss_pred cccHHHHHHHHhcCCC
Q psy12589 131 KVRYEDFVKIACAPVP 146 (149)
Q Consensus 131 ~i~~~eF~~~l~~~~p 146 (149)
.-+|+.+++.|..+.|
T Consensus 22 vpdYdnYVehmr~~hP 37 (65)
T COG2879 22 VPDYDNYVEHMRKKHP 37 (65)
T ss_pred CCcHHHHHHHHHHhCc
Confidence 3445555555554444
No 330
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=22.46 E-value=2.1e+02 Score=19.65 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=29.0
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 90 TTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 90 ~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.|..|....+++...++..+..++.+.+..+...-+
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 467889999999999988888899888877776643
No 331
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=22.41 E-value=1.7e+02 Score=16.77 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
|+..||.+.+..-...++..++..++..
T Consensus 1 m~k~eli~~i~~~~~~~s~~~v~~vv~~ 28 (94)
T TIGR00988 1 MTKSELIERIATQQSHLPAKDVEDAVKT 28 (94)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3566666666543333565555554444
No 332
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=22.30 E-value=1.3e+02 Score=18.22 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 97 PAKYLKHVLVNW-GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 97 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
|.+|+.+++..+ | .++++++..+ +..++|++|..-.
T Consensus 24 t~~Evd~vi~WLTG--y~~~~l~~~~-------~~~~~~~~FF~~A 60 (111)
T PF09966_consen 24 TKEEVDQVIRWLTG--YDQEELQAQI-------ESKVTFETFFAQA 60 (111)
T ss_dssp -HHHHHHHHHHHH-----HHHHHHHT-------TS--BHHHHHHT-
T ss_pred CHHHHHHHHHHHhc--CCHHHHHHHH-------HcCCCHHHHHHHc
Confidence 456666666553 4 4444444432 2247888887654
No 333
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=21.94 E-value=1e+02 Score=17.53 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 109 GEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
|-.++++-.+.+-+.+.......|++++.+...
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344666666666666665556668888887654
No 334
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.90 E-value=1.6e+02 Score=16.24 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=22.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 94 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 94 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
..-+-+|+.+.|...|..++...+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 46688999999999999999998888888763
No 335
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=21.73 E-value=1.4e+02 Score=15.87 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 93 SGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
+|.|+..++...+.. ....++...-|.-++.+|+..+
T Consensus 21 ~g~v~ls~l~~~~~~------------~~~~f~~~~yG~~~l~~ll~~~ 57 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKK------------KYPDFDPRDYGFSSLSELLESL 57 (74)
T ss_dssp TSSEEHHHHHHHHHH------------HHTT--TCCTTSSSHHHHHHT-
T ss_pred CceEEHHHHHHHHHH------------HCCCCCccccCCCcHHHHHHhC
Confidence 567777777766532 2245666777888888887653
No 336
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=21.51 E-value=2.6e+02 Score=18.57 Aligned_cols=39 Identities=5% Similarity=0.100 Sum_probs=29.1
Q ss_pred hhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhC
Q psy12589 87 AADTTKSGTVPAKYLKHVLVNWG--EGLSSKEVDQIFREAN 125 (149)
Q Consensus 87 ~~D~~~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~ 125 (149)
.+.++....+|.++|.+.++... ..++.+.++.+...+.
T Consensus 141 lHn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 141 LHNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred hcCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 34555567899999999988763 4788888888877653
No 337
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=21.30 E-value=1.8e+02 Score=19.77 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC
Q psy12589 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 129 (149)
Q Consensus 96 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 129 (149)
-.++|+.++++..| +++++.+.+.+.+..+++
T Consensus 80 ~e~~el~~iy~~~G--l~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 80 EEKEELVEIYRAKG--LSEEDAEEIAEELSKDKD 111 (213)
T ss_pred hHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCch
Confidence 44558888888876 788888888888766554
No 338
>PF00351 Biopterin_H: Biopterin-dependent aromatic amino acid hydroxylase; InterPro: IPR019774 Phenylalanine, tyrosine and tryptophan hydroxylases constitute a family of tetrahydrobiopterin-dependent aromatic amino acid hydroxylases, all of which are rate-limiting catalysts for important metabolic pathways []. The proteins are structurally and functionally related, each containing iron, and catalysing ring hydroxylation of aromatic amino acids, using tetra-hydrobiopterin (BH4) as a substrate. All are regulated by phosphorylation at serines in their N-termini. It has been suggested that the proteins each contain a conserved C-terminal catalytic (C) domain and an unrelated N-terminal regulatory (R) domain. It is possible that the R domains arose from genes that were recruited from different sources to combine with the common gene for the catalytic core. Thus, by combining with the same C domain, the proteins acquired the unique regulatory properties of the separate R domains. A variety of enzymes belong to this family that includes, phenylalanine-4-hydroxylase from Chromobacterium violaceum where it is copper-dependent; it is iron-dependent in Pseudomonas aeruginosa, phenylalanine-4-hydroxylase catalyzes the conversion of phenylalanine to tyrosine. In humans, deficiencies are the cause of phenylketonuria, the most common inborn error of amino acid metabolism [], tryptophan 5-hydroxylase catalyzes the rate-limiting step in serotonin biosynthesis: the conversion of tryptophan to 3-hydroxy-anthranilate and tyrosine 3-hydroxylase catalyzes the rate limiting step in catecholamine biosynthesis: the conversion of tyrosine to 3,4-dihydroxy-L-phenylalanine.; GO: 0016714 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1PHZ_A 2PHM_A 2V28_A 2V27_A 1PAH_A 1DMW_A 1TG2_A 1KW0_A 1MMT_A 1TDW_A ....
Probab=21.24 E-value=2.2e+02 Score=21.11 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHhhccC--CCcCCHHHHHHHHHHc----CCC----CCHHHHHHHHH--------hcCCCcCHHHHH
Q psy12589 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSL----GMS----PTIAELKKYLA--------EKGGKLSFPDFL 65 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~--g~i~~~~~l~~~l~~~----~~~----~~~~~~~~~~~--------~~~g~i~~~ef~ 65 (149)
..|++|.+.++.+|...-+- ++- +.++...+..+ |+. +..+++...++ ...|.|+..+|.
T Consensus 60 ~YT~eE~~tW~~v~~rl~~l~~~~A--C~eyl~~~~~L~~~~G~~~d~IPqL~dvs~~L~~~TGw~l~pV~Gll~~rdF~ 137 (332)
T PF00351_consen 60 EYTEEEHATWRTVYRRLMKLYPTHA--CREYLEGFPLLEKYCGYPEDRIPQLEDVSEFLKERTGWQLRPVAGLLSARDFF 137 (332)
T ss_dssp G--HHHHHHHHHHHHHHHHHHHHHB---HHHHHHHHHHHHHHT-BTTB---HHHHHHHHHHHHS-EEEEESSEB-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHhccCCCccCCCCHHHHhHHHHhhcCeEEEEeCcccCHHHHH
Confidence 35788889999999887653 333 45555544433 432 44567777776 477999999999
Q ss_pred HHHccccc-------------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---CCCCCHHHHHHHHHhh
Q psy12589 66 KVMHTHSK-------------AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW---GEGLSSKEVDQIFREA 124 (149)
Q Consensus 66 ~~~~~~~~-------------~~~~~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~---~~~~~~~~~~~~~~~~ 124 (149)
..+....- -...++-+..+|...= .+.-..|.+..+.+ +.+-+++++..+-+.+
T Consensus 138 ~~LA~RvFp~TqyIRh~~~p~YtpEPDi~HEl~GHvP-----mLadp~FA~f~q~~G~asl~asde~i~~Larly 207 (332)
T PF00351_consen 138 AGLAFRVFPCTQYIRHHSEPDYTPEPDIFHELFGHVP-----MLADPSFADFSQEIGLASLGASDEDIEKLARLY 207 (332)
T ss_dssp HHHTTTEEEEESS---TTSTTS-SS--HHHHHHHTHH-----HHTSHHHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHhcCcCceEeeecCCCCCCCCCCCccHhHHhccch-----hhhcHHHHHHHHHHHHHHhhhhHHHHHHHHhhe
Confidence 99864331 0123456666664431 11223455555444 3556777777776654
No 339
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=21.22 E-value=1.3e+02 Score=16.07 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=16.0
Q ss_pred ccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy12589 21 ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE 54 (149)
Q Consensus 21 d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 54 (149)
..+..+ +..++...+...|..++...+...+..
T Consensus 9 ~~~p~~-s~~~i~~~l~~~~~~vS~~TI~r~L~~ 41 (72)
T PF01498_consen 9 RRNPRI-SAREIAQELQEAGISVSKSTIRRRLRE 41 (72)
T ss_dssp --------HHHHHHHT---T--S-HHHHHHHHHH
T ss_pred HHCCCC-CHHHHHHHHHHccCCcCHHHHHHHHHH
Confidence 345567 788888877666888888888887763
No 340
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=21.20 E-value=1.4e+02 Score=16.02 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=17.9
Q ss_pred hcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Q psy12589 88 ADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQIFREA 124 (149)
Q Consensus 88 ~D~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~~ 124 (149)
+.....+.+|..++..+..-+. .+.+.+-+..++...
T Consensus 5 ~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a 42 (73)
T TIGR01446 5 FEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALKEA 42 (73)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3333334555555544443321 125566666666654
No 341
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.10 E-value=3.1e+02 Score=19.30 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCcccHHHHHHHHHHhCC------CCCHHHHHHHHHhhCCCCC-CcccHHHHHHH
Q psy12589 92 KSGTVPAKYLKHVLVNWGE------GLSSKEVDQIFREANVTMN-SKVRYEDFVKI 140 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~-g~i~~~eF~~~ 140 (149)
+.|.+-.+.+.+++..++. -..+++...+++.+..+-| +.|+..+-+..
T Consensus 167 ~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 167 EKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 4577888888999987763 2456778899999998888 88998887653
No 342
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.99 E-value=1.8e+02 Score=25.31 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT 127 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 127 (149)
--|+||.+.+..++..+|...+.+++.-+|..+..+
T Consensus 1134 MRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~ 1169 (1301)
T PF05788_consen 1134 MRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLE 1169 (1301)
T ss_pred hhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhccc
Confidence 369999999999999999999999988888887554
No 343
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=20.91 E-value=2.1e+02 Score=19.35 Aligned_cols=32 Identities=13% Similarity=0.397 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHHHh--hccCCCcCCHHHHHHHH
Q psy12589 4 HFREQDIDEFRECFFL--FARNGTIKTLDELSVIM 36 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~--~d~~g~i~~~~~l~~~l 36 (149)
.||+.|.+-++.+|.. ||....+ +..++.+.|
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~-~l~dLA~~l 188 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRV-SLKDLAKEL 188 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccC-CHHHHHHHh
Confidence 4677777777666654 4544555 555555543
No 344
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=20.79 E-value=98 Score=20.78 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 78 PKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 78 ~~~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
.+.++.+|..||+..=-..+.+++.+++..-+.-.....++.++..
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGN 98 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHH
Confidence 5578999999998776667888999888877654455555555543
No 345
>KOG4629|consensus
Probab=20.78 E-value=2.4e+02 Score=23.37 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q psy12589 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141 (149)
Q Consensus 80 ~~~~~f~~~D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~~~l 141 (149)
..+.+|+..-+.+.-.+..+++... ..+++++..+..++...++.|++..|..-.
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 4567888888877778887777644 456788888888877666669998887654
No 346
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=20.59 E-value=2.4e+02 Score=17.94 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=28.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 92 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
.+...|.+|+.+.|+..|..++...+-..++.+.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 4567899999999999999999888888888764
No 347
>KOG2278|consensus
Probab=20.41 E-value=1.4e+02 Score=19.94 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=22.2
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12589 89 DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 123 (149)
Q Consensus 89 D~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 123 (149)
..+++|++..+++.+.=.--|.+.+-+++..+.+.
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ 62 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKR 62 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhc
Confidence 45677777777776655444555666666666554
No 348
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=20.31 E-value=3e+02 Score=18.83 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=16.9
Q ss_pred CCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCC
Q psy12589 93 SGTVPAKYLKHVLVNWG---EGLSSKEVDQIFREANV 126 (149)
Q Consensus 93 ~g~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~ 126 (149)
.|.|+..|+...+.... ..++++++...++.+..
T Consensus 111 GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~ 147 (223)
T PF04157_consen 111 GGIISLSDLYCRYNRARGGSELISPEDILRACKLLEV 147 (223)
T ss_dssp TSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCC
T ss_pred CCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHH
Confidence 35666666665555532 23555555555555543
No 349
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=20.30 E-value=1.3e+02 Score=20.88 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHHHhhccC-CCcCCHHHHH
Q psy12589 4 HFREQDIDEFRECFFLFARN-GTIKTLDELS 33 (149)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~-g~i~~~~~l~ 33 (149)
.||..+++.+..+|..+|.+ |.+ ..+-++
T Consensus 182 tLSYSEleAve~I~eELdG~EG~l-vASkiA 211 (261)
T COG4465 182 TLSYSELEAVEHIFEELDGNEGLL-VASKIA 211 (261)
T ss_pred hccHHHHHHHHHHHHhcCCcccee-eehhhh
Confidence 58899999999999999976 766 444443
No 350
>PRK00441 argR arginine repressor; Provisional
Probab=20.27 E-value=2.5e+02 Score=17.99 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=29.1
Q ss_pred HHHHhhccCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy12589 15 ECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA 53 (149)
Q Consensus 15 ~~f~~~d~~g~i~~~~~l~~~l~~~~~~~~~~~~~~~~~ 53 (149)
.+-...-.++.. +..++...|+.-|+.++...+-+-++
T Consensus 8 ~I~~ll~~~~~~-~q~eL~~~L~~~G~~vSqaTisRDl~ 45 (149)
T PRK00441 8 KILEIINSKEIE-TQEELAEELKKMGFDVTQATVSRDIK 45 (149)
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHhcCCCcCHHHHHHHHH
Confidence 334444556777 89999999999999999888777554
No 351
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=20.16 E-value=2.4e+02 Score=17.82 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q psy12589 97 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138 (149)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~eF~ 138 (149)
+.+.+..++.++|.- ...++.+.+.+ +.+|..+|+.|.
T Consensus 72 tr~~l~~il~sIg~l--a~Nin~i~~Aa--~~~~~pd~e~f~ 109 (147)
T PF07328_consen 72 TRQKLEDILRSIGGL--ATNINQILKAA--NRTPRPDYEAFR 109 (147)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHH--hcCCCccHHHHH
Confidence 344555566665522 22356666665 334445555554
No 352
>PRK04280 arginine repressor; Provisional
Probab=20.15 E-value=1.8e+02 Score=18.58 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12589 94 GTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125 (149)
Q Consensus 94 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (149)
..=|-+|+.+.|...|...|...+..-++++.
T Consensus 17 ~I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~ 48 (148)
T PRK04280 17 EIETQDELVDRLREEGFNVTQATVSRDIKELH 48 (148)
T ss_pred CCCCHHHHHHHHHHcCCCeehHHHHHHHHHcC
Confidence 44578899999999999999988888888763
Done!