RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12589
(149 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 116 bits (292), Expect = 4e-34
Identities = 61/149 (40%), Positives = 91/149 (61%), Gaps = 7/149 (4%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL----AE 54
MA E+ I EF+E F LF ++ GTI T EL +MRSLG +PT AEL+ + A+
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDAD 59
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
G + FP+FL +M K D +E+ +AFK D +G + A L+HV+ N GE L+
Sbjct: 60 GNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTD 119
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKIACA 143
+EVD++ REA+V + ++ YE+FVK+ +
Sbjct: 120 EEVDEMIREADVDGDGQINYEEFVKMMMS 148
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 89.7 bits (223), Expect = 1e-23
Identities = 49/143 (34%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 3 HHFREQDIDEFRECFFLFARNGT--IKTLDELSVIMRSLGMSPTIAELKKYLAE---KGG 57
E+ I E +E F LF R+ I +EL I+RSLG +P+ AE+ K E
Sbjct: 12 TQLTEEQIQELKEAFQLFDRDSDGLI-DRNELGKILRSLGFNPSEAEINKLFEEIDAGNE 70
Query: 58 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 117
+ FP+FL VM K D +E+ +AFK D G + L+ VL + GE LS +EV
Sbjct: 71 TVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEV 130
Query: 118 DQIFREANVTMNSKVRYEDFVKI 140
+++ +E + + ++ YE+F K+
Sbjct: 131 EKLLKEYDEDGDGEIDYEEFKKL 153
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 70.1 bits (172), Expect = 4e-16
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 5 FREQDIDEFRECFFLFARNGTIKTLD--ELSVIMRSLGMSPTIAELKKYLA----EKGGK 58
E E RE F LF +G+ T+D EL V MRSLG P E+K+ +A + GK
Sbjct: 11 LTEDQKKEIREAFDLFDTDGS-GTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGK 69
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD 118
+ F +FL +M D +E++ AF+ D K+G + K LK V GE ++ +E+
Sbjct: 70 IDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQ 129
Query: 119 QIFREANVTMNSKVRYEDFVKI 140
++ EA+ + ++ E+F +I
Sbjct: 130 EMIDEADRNGDGEISEEEFYRI 151
Score = 36.6 bits (85), Expect = 0.002
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 75 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 134
ED KE+ +AF DT SGT+ K LK + + G +E+ Q+ + + + K+ +
Sbjct: 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDF 72
Query: 135 EDFVKIA 141
E+F+ I
Sbjct: 73 EEFLDIM 79
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 40.6 bits (96), Expect = 9e-06
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 12 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 65
E RE F LF ++ GTI + DEL ++SLG + E+ + + E GK+ F +FL
Sbjct: 1 ELREAFRLFDKDGDGTI-SADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFL 59
Query: 66 KVMH 69
++M
Sbjct: 60 ELMA 63
Score = 36.0 bits (84), Expect = 5e-04
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
E+ +AF+ D GT+ A LK L + GEGLS +E+D++ RE + + K+ +E+F++
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 140 I 140
+
Sbjct: 61 L 61
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 30.4 bits (69), Expect = 0.056
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 86 KAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ----IFREANVTMNSKVRYEDFVKI 140
K D G + + L+ +L G L+ +EV++ F E + + ++ +E+F++
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEA 59
Score = 28.5 bits (64), Expect = 0.31
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 22 RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--------KGGKLSFPDFLKVM 68
+G I ++EL ++++LG+ T E+++ + G++SF +FL+ M
Sbjct: 7 GDGYI-DVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
>gnl|CDD|173855 cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 470
Score = 30.6 bits (70), Expect = 0.24
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 107 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141
N+G G S+ EVD + E + + R E +I
Sbjct: 401 NYG-GYSNPEVDALIEELRTEFDPEERAELAAEIQ 434
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 28.2 bits (64), Expect = 0.31
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 23 NGTIKTLDELSVIMRSLGMSPT---IAELKKYLAEKG-GKLSFPDFLKVM 68
G I T +EL + LG+S + + L + G GK+SF +F ++
Sbjct: 2 KGLI-TREELKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFCVLL 50
Score = 25.2 bits (56), Expect = 3.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 101 LKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
LK L G LS +EVD +FRE + + K+ +E+F
Sbjct: 10 LKRALALLGISLSEEEVDILFREFDTDGDGKISFEEFC 47
>gnl|CDD|149089 pfam07830, PP2C_C, Protein serine/threonine phosphatase 2C,
C-terminal domain. Protein phosphatase 2C (PP2C) is
involved in regulating cellular responses to stress in
various eukaryotes. It consists of two domains: an
N-terminal catalytic domain and a C-terminal domain
characteristic of mammalian PP2Cs. This domain consists
of three antiparallel alpha helices, one of which packs
against two corresponding alpha-helices of the
N-terminal domain. The C-terminal domain does not seem
to play a role in catalysis, but it may provide protein
substrate specificity due to the cleft that is created
between it and the catalytic domain.
Length = 81
Score = 28.4 bits (64), Expect = 0.48
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 46 AELKKYLA-------EKGGKLSFPDFLKVMHTHSKAEDIP 78
AEL KYL EK + PD L VM T + +EDIP
Sbjct: 22 AELDKYLEQRVEEIIEKSSEDGVPDLLHVMKTLA-SEDIP 60
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 26.8 bits (60), Expect = 0.61
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWG 109
E+ +AFK D G + A+ L+ L + G
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
>gnl|CDD|151031 pfam10458, Val_tRNA-synt_C, Valyl tRNA synthetase tRNA binding
arm. This domain is found at the C-terminus of Valyl
tRNA synthetases.
Length = 66
Score = 27.6 bits (62), Expect = 0.77
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Query: 47 ELKKYLAEKG---GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 87
EL K E KLS P F+ +KA P EVV+ KA
Sbjct: 12 ELAKLQKEIERLQKKLSNPGFV------AKA---PAEVVEEEKA 46
>gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.
Length = 239
Score = 28.7 bits (65), Expect = 1.0
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 7 EQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLK 66
++DIDE + G I ++ S+ MSP I + K YL S FLK
Sbjct: 56 DEDIDEL--FEKVKEDGGKID------FLVHSIAMSPEIRKGKPYL-----DTSREGFLK 102
Query: 67 VMHT 70
+
Sbjct: 103 ALDI 106
>gnl|CDD|173869 cd08504, PBP2_OppA, The substrate-binding component of an ABC-type
oligopetide import system contains the type 2
periplasmic binding fold. This family represents the
periplasmic substrate-binding component of an
ATP-binding cassette (ABC)-type oligopeptide transport
system comprised of 5 subunits. The transport system
OppABCDEF contains two homologous integral membrane
proteins OppB and OppF that form the translocation pore;
two homologous nucleotide-binding domains OppD and OppF
that drive the transport process through binding and
hydrolysis of ATP; and the substrate-binding protein or
receptor OppA that determines the substrate specificity
of the transport system. The dipeptide (DppA) and
oligopeptide (OppA) binding proteins differ in several
ways. The DppA binds dipeptides and some tripeptides and
is involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 498
Score = 28.7 bits (65), Expect = 1.1
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 107 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
N+G G S+ E D++ +A + + R+E K
Sbjct: 422 NYG-GYSNPEYDKLLAKAATETDPEKRWELLAK 453
>gnl|CDD|206170 pfam14000, Packaging_FI, DNA packaging protein FI. This family
includes the lambda phage DNA-packaging protein FI.
Proteins in this family are typically between 124 and
140 amino acids in length. There is a conserved EEE
sequence motif.
Length = 125
Score = 27.8 bits (62), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 26 IKTLDELSVIM-RSLGMSPTIAELKKYLAE 54
+ L EL+ I+ R +S + AEL + +AE
Sbjct: 6 LARLRELAAILGREPDVSGSAAELAQRVAE 35
>gnl|CDD|167589 PRK03717, PRK03717, ribonuclease P protein component 2;
Provisional.
Length = 120
Score = 27.5 bits (61), Expect = 1.7
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 34 VIMRSLGMSPTIAELK-KYLAEKGGK 58
I+R+LG+S TI LK K+L+E G K
Sbjct: 95 AIIRTLGVSGTIKRLKRKFLSEFGWK 120
>gnl|CDD|223806 COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion
transport and metabolism].
Length = 145
Score = 27.6 bits (62), Expect = 1.9
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 41 MSPTIAELKKYLAEKGGKLSFP-----DFLKVMHTHSKAEDIPKEVVDAFK 86
M+ T+ + + L E G +L+ + L H AE++ +E+ +
Sbjct: 1 MTMTLEDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGP 51
>gnl|CDD|114264 pfam05533, Peptidase_C42, Beet yellows virus-type papain-like
endopeptidase C42. Members of the Closteroviridae and
Potyviridae families of plant positive-strand RNA
viruses encode one or two papain-like leader
proteinases, belonging to Merops peptidase family C42.
Length = 88
Score = 27.0 bits (60), Expect = 2.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 39 LGMSPTIAELKKYLAEKGGK 58
LGM PT+AEL+ L + GK
Sbjct: 31 LGMFPTVAELRARLVREYGK 50
>gnl|CDD|234996 PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit
HisF; Provisional.
Length = 253
Score = 27.3 bits (62), Expect = 2.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 44 TIAELKKYLAEKG 56
TI ELK YLAE+G
Sbjct: 236 TIGELKAYLAEQG 248
>gnl|CDD|173882 cd08517, PBP2_NikA_DppA_OppA_like_13, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 480
Score = 27.5 bits (62), Expect = 2.7
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 109 GEGLSSKEVDQIFREANVTMNSKVR---YEDFVKIACAPVPDYY 149
G S+ EVD + +A V + R Y++F KI +P
Sbjct: 420 ASGYSNPEVDALLEKAAVETDPAKRKALYKEFQKILAEDLPIIP 463
>gnl|CDD|235629 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 27.4 bits (61), Expect = 3.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 70 THSKAEDIPKEVVDAFKAADTTKSGTV 96
T AE+ + V A +AA T G V
Sbjct: 131 TAQSAENAGRLVDQALQAAVTPHRGPV 157
>gnl|CDD|173863 cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 481
Score = 27.5 bits (62), Expect = 3.2
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 106 VNWGEGLSSKEVDQIFREANVTMNSKVR---YEDFVKIA 141
N G G S+ EVD + A M+ R ++ +I
Sbjct: 415 YNRG-GYSNPEVDALIEAAASEMDPAKRAALLQEAQEIV 452
>gnl|CDD|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain
of putative mammalian glycerophosphodiester
phosphodiesterase GDE5 and similar proteins. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in putative
mammalian GDE5 and similar proteins. Mammalian GDE5 is
widely expressed in mammalian tissues, with highest
expression in the spinal chord. Although its biological
function remains unclear, mammalian GDE5 shows higher
sequence homology to fungal and plant
glycerophosphodiester phosphodiesterases (GP-GDEs, EC
3.1.4.46) than to other bacterial and mammalian GP-GDEs.
It may also hydrolyze glycerophosphodiesters to
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. In addition to C-terminal GDPD domain, all
members in this subfamily have a starch binding domain
(CBM20) in the N-terminus, which suggests these proteins
may play a distinct role in glycerol metabolism.
Length = 290
Score = 27.3 bits (61), Expect = 3.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 98 AKYLKHVLVNWGEGLSSKEVDQIFREANVT 127
AK L V+ WG+ L+ E + +E V
Sbjct: 254 AKSLGLVVFCWGDDLNDPENRKKLKELGVD 283
>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first
repeat of 2. ISG15 is a ubiquitin-like protein
containing two ubiquitin homology domains that becomes
conjugated to a variety of proteins when cells are
treated with type I interferon or lipopolysaccharide.
Although ISG15 has properties similar to those of other
ubiquitin-like molecules, it is a unique member of the
ubiquitin-like superfamily, whose expression and
conjugation to target proteins are tightly regulated by
specific signaling pathways, indicating it may have
specialized functions in the immune system.
Length = 80
Score = 26.0 bits (57), Expect = 3.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 35 IMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAED 76
+ SL S T++ELK+ +A+K G +F L + + +D
Sbjct: 15 FLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQD 56
>gnl|CDD|165700 PLN00131, PLN00131, hypothetical protein; Provisional.
Length = 218
Score = 26.5 bits (58), Expect = 4.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 13 FRECFFLFARNGTIKTL 29
FR CFF F R G I +L
Sbjct: 25 FRRCFFFFMRKGGIVSL 41
>gnl|CDD|218763 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit
Ribophorin II. This family contains eukaryotic
Ribophorin II (RPN2) proteins. The mammalian
oligosaccharyltransferase (OST) is a protein complex
that effects the cotranslational N-glycosylation of
newly synthesised polypeptides, and is composed of the
following proteins: ribophorins I and II (RI and RII),
OST48, and Dadl, N33/IAP, OST4, STT3. The family also
includes the SWP1 protein from yeast. In yeast the
oligosaccharyltransferase complex is composed 7 or 8
subunits, SWP1, being one of them.
Length = 636
Score = 27.0 bits (60), Expect = 5.1
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 5/126 (3%)
Query: 2 AHHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGM-----SPTIAELKKYLAEKG 56
+HH D F +++ V ++ LG+ +KK L
Sbjct: 26 SHHLTAADQARLAAVFAEGGPFTDLESAYYAVVGLKILGIPVPDEQKACKFVKKNLDSSS 85
Query: 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE 116
S DIP + D AA + S + Y L + G + +
Sbjct: 86 DFESLFYAAGSSKVLGCKIDIPNDTRDLLLAAVSEDSSLLQIYYAVGSLSSLGLPVDLPD 145
Query: 117 VDQIFR 122
++ +
Sbjct: 146 SQEVLK 151
>gnl|CDD|180236 PRK05753, PRK05753, nucleoside diphosphate kinase regulator;
Provisional.
Length = 137
Score = 26.1 bits (58), Expect = 5.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 126 VTMNSKVRYED 136
VTMNS+VR+ D
Sbjct: 55 VTMNSRVRFRD 65
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases. This
family of enzymes catalyzes the cyclization of the
triterpenes squalene or 2-3-oxidosqualene to a variety
of products including hopene , lanosterol ,
cycloartenol, amyrin, lupeol and isomultiflorenol.
Length = 621
Score = 26.6 bits (59), Expect = 6.3
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 24 GTIKTLDELSVIMRSLGMSPTIAELKK---YLAEKGGKLSFPDFLKVM 68
T+ V ++ LGMSP + + ++ ++GG ++ P F K
Sbjct: 73 STVFGTVLAYVALKILGMSPDDPAMVRARNFILKQGGAVASPVFTKFW 120
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit;
Reviewed.
Length = 571
Score = 26.3 bits (58), Expect = 8.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 73 KAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD 118
KA D+P+ + +AF A T + G V K ++V GE ++D
Sbjct: 145 KASDLPRIIKEAFHIATTGRPGPVLIDIPKDMVVEEGEFCYDVQMD 190
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 26.2 bits (59), Expect = 8.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 45 IAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 87
+A+L+K + KLS F+ +KA P+EVV+ +
Sbjct: 820 LAKLEKEIERVEKKLSNEGFV------AKA---PEEVVEKERE 853
>gnl|CDD|216773 pfam01900, RNase_P_Rpp14, Rpp14/Pop5 family. tRNA processing
enzyme ribonuclease P (RNase P) consists of an RNA
molecule associated with at least eight protein
subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30,
Rpp38, and Rpp40. This protein is known as Pop5 in
eukaryotes.
Length = 103
Score = 25.2 bits (56), Expect = 9.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 25 TIKTLDELSVIMRSLGMSPTIAELKKYL 52
I ++ VI+R LG+S TI + ++ L
Sbjct: 74 LITSIGGKPVIIRVLGVSGTIKKCEEKL 101
>gnl|CDD|216340 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.
Length = 217
Score = 25.6 bits (57), Expect = 9.3
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 1 MAHHFREQDIDEFRECFFLFARNGTIKTLDE--LSVIMRSLGMSPTI 45
M H + D F L+ L+ + SLG S +
Sbjct: 150 MTHFACADEPDYTERQLARFRE--LADRLEAAGLAPPVLSLGNSAAL 194
>gnl|CDD|227267 COG4930, COG4930, Predicted ATP-dependent Lon-type protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 683
Score = 26.0 bits (57), Expect = 9.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 11/41 (26%)
Query: 8 QDIDEFRECFFLFARNGTIKTLDE-LSVIMRSLGMSPTIAE 47
++++E R CF TLDE + V++RS+GM P + E
Sbjct: 177 KELEEGRGCF----------TLDEWIDVLIRSIGMEPAVYE 207
>gnl|CDD|227553 COG5228, POP2, mRNA deadenylase subunit [RNA processing and
modification].
Length = 299
Score = 26.0 bits (57), Expect = 10.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 133 RYEDFVKIACAPVPDYY 149
EDF P++Y
Sbjct: 185 NKEDFYWWLHQYFPNFY 201
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,708,044
Number of extensions: 684700
Number of successful extensions: 952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 939
Number of HSP's successfully gapped: 59
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.3 bits)