RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12589
(149 letters)
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 145 bits (369), Expect = 5e-46
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDF 64
E+ +DE + ++ G I ++D S R LG++P+ + KK G L++ +
Sbjct: 11 EEKVDESDVRIYFNEKSSGGKI-SIDNASYNARKLGLAPSSIDEKKIKELYGDNLTYEQY 69
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124
L+ + +D +E++ F D +G + +K++L WG+ L+ +E
Sbjct: 70 LEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF 129
Query: 125 NVTMNSKVRYEDFVKI 140
+ + Y+ F +
Sbjct: 130 SS--EDNIDYKLFCED 143
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 131 bits (332), Expect = 2e-40
Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 9 DIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLK 66
D +++ F LF R+ G I + ++R+ G +PT+AE+ + + ++ FL+
Sbjct: 3 DDSPYKQAFSLFDRHGTGRI-PKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQ 61
Query: 67 VMHTHSKAED--IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124
V++ + + P+E V F+ D +G + L++VL + GE LS++E+D++ +
Sbjct: 62 VLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV 121
Query: 125 NVTMNSKVRYEDFVKIACA 143
V + V Y DFV++ A
Sbjct: 122 PVK-DGMVNYHDFVQMILA 139
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 128 bits (325), Expect = 2e-39
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 5 FREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLSFP 62
F + I EF+E F + +N G I ++L ++ S+G +PT L+ ++E G ++F
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFI-DKEDLHDMLASMGKNPTDEYLEGMMSEAPGPINFT 59
Query: 63 DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 122
FL + D + +AF D SG + +L+ +L G+ + +EVD+++R
Sbjct: 60 MFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYR 119
Query: 123 EANVTMNSKVRYEDFVKI 140
EA + Y +F +I
Sbjct: 120 EAPIDKKGNFNYVEFTRI 137
Score = 40.6 bits (96), Expect = 3e-05
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQDI-DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
D D R F F +G I D L ++ ++G T E+ + E
Sbjct: 65 FGEKLNGTDPEDVIRNAFACFDEEASGFI-HEDHLRELLTTMGDRFTDEEVDEMYREAPI 123
Query: 55 -KGGKLSFPDFLKVM 68
K G ++ +F +++
Sbjct: 124 DKKGNFNYVEFTRIL 138
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 128 bits (324), Expect = 6e-39
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 4 HFREQDIDEFRECFFLF----ARNGTIKTLDELSVIMRSLGMSPTIAELKKYL---AEKG 56
+ +I+E RE F LF R+G + ++ ++R LGM+PT A++ ++
Sbjct: 2 QLTKDEIEEVREVFDLFDFWDGRDGDV-DAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGE 60
Query: 57 GKLSFPDFLKVMHTHSKAED--IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
+ L + S + E ++AFK D G + + +++VL GE ++
Sbjct: 61 KAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITE 120
Query: 115 KEVDQIFREANVTMNS--KVRYEDFVK-IACAPVPD 147
+ + IF ++ + ++YED +K + P PD
Sbjct: 121 DQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPFPD 156
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 125 bits (317), Expect = 5e-38
Identities = 58/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%)
Query: 2 AHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----K 55
A E+ I EF+E F LF ++ GTI T EL +MRSLG +PT AEL+ + E
Sbjct: 1 AEQLTEEQIAEFKEAFALFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDADG 59
Query: 56 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK 115
G + FP+FL +M K +D +E+++AFK D +G + A L+HV+ N GE L+
Sbjct: 60 NGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDD 119
Query: 116 EVDQIFREANVTMNSKVRYEDFVKI 140
EVD++ REA++ + + YE+FV++
Sbjct: 120 EVDEMIREADIDGDGHINYEEFVRM 144
Score = 45.6 bits (109), Expect = 4e-07
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQD-IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
MA +EQD +E E F +F R NG I + EL +M +LG T E+ + + E
Sbjct: 72 MARKMKEQDSEEELIEAFKVFDRDGNGLI-SAAELRHVMTNLGEKLTDDEVDEMIREADI 130
Query: 55 -KGGKLSFPDFLKVM 68
G +++ +F+++M
Sbjct: 131 DGDGHINYEEFVRMM 145
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 125 bits (317), Expect = 7e-38
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLG-MSPTIAELKKYLAEKGG 57
+ F E +I++F+E F + +N G I D+L ++G ++ EL + E G
Sbjct: 15 VFSMFDETEIEDFKEAFTVIDQNADGII-DKDDLRETFAAMGRLNVKNEELDAMIKEASG 73
Query: 58 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 117
++F FL + K D ++ AFK D G++ +L+ +L G + +E+
Sbjct: 74 PINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEI 133
Query: 118 DQIFREANVTMNSKVRYEDFVKI 140
++ + V Y++ +
Sbjct: 134 KNMWAAFPPDVAGNVDYKNICYV 156
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 1 MAHHFREQD-IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
+ D D F + G+I L ++ + G T E+K A
Sbjct: 84 FGEKLKGADPEDVIMGAFKVLDPDGKGSI-KKSFLEELLTTGGGRFTPEEIKNMWAAFPP 142
Query: 55 -KGGKLSFPDFLKVMHTHSKAED 76
G + + + V+ TH + +
Sbjct: 143 DVAGNVDYKNICYVI-THGEDAE 164
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 125 bits (316), Expect = 7e-38
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 3 HHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGKLS 60
++ + E +E F + ++ G I +++L + SLG P EL L E G+L+
Sbjct: 8 VKLSQRQMQELKEAFTMIDQDRDGFI-GMEDLKDMFSSLGRVPPDDELNAMLKECPGQLN 66
Query: 61 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI 120
F FL + D + +AF D G +P YLK +L N G+ S +E+ +
Sbjct: 67 FTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNV 126
Query: 121 FREANVTMNSKVRYEDFVKI 140
+++A + N + Y V I
Sbjct: 127 WKDAPLK-NKQFNYNKMVDI 145
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 1 MAHHFREQD-IDEFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE---K 55
D D R F +F +G D L ++ ++G + + E+K + K
Sbjct: 74 FGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK 133
Query: 56 GGKLSFPDFLKVMHTHSKAED 76
+ ++ + + ++ ED
Sbjct: 134 NKQFNYNKMVDIK-GKAEDED 153
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 124 bits (315), Expect = 1e-37
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGK 58
+ ++ I E +E F + + G + + +++ I LG +P EL L E G
Sbjct: 8 VLTKLPQKQIQEMKEAFSMIDVDRDGFV-SKEDIKAISEQLGRAPDDKELTAMLKEAPGP 66
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD 118
L+F FL + D + + +AF D ++ + +Y+K +L N G+ + E+
Sbjct: 67 LNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMR 126
Query: 119 QIFREANVTMNSKVRYEDFVKI 140
F+EA V K Y F +
Sbjct: 127 MTFKEAPVE-GGKFDYVKFTAM 147
Score = 47.5 bits (114), Expect = 9e-08
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 1 MAHHFREQDI-DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
+ D + R F +F + ++ + ++ ++G + E++ E
Sbjct: 76 FSDKLSGTDSEETIRNAFAMFDEQETKKL-NIEYIKDLLENMGDNFNKDEMRMTFKEAPV 134
Query: 55 KGGKLSFPDFLKVMHTHSKAED 76
+GGK + F ++ S E+
Sbjct: 135 EGGKFDYVKFTAMI-KGSGEEE 155
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 124 bits (314), Expect = 3e-37
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 7/146 (4%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
MA E+ I EF+E F LF ++ GTI T EL +MRSLG +PT AEL+ + E
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDAD 59
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
G + FP+FL +M K D +E+ +AF+ D +G + A L+HV+ N GE L+
Sbjct: 60 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD 119
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
+EVD++ REA++ + +V YE+FV++
Sbjct: 120 EEVDEMIREADIDGDGQVNYEEFVQM 145
Score = 51.0 bits (123), Expect = 6e-09
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 1 MAHHFREQD-IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
MA ++ D +E RE F +F + NG I + EL +M +LG T E+ + + E
Sbjct: 73 MARKMKDTDSEEEIREAFRVFDKDGNGYI-SAAELRHVMTNLGEKLTDEEVDEMIREADI 131
Query: 55 -KGGKLSFPDFLKVMHTHSKAEDIP---KEVVDAFKAADTTKSGTV 96
G++++ +F+++M + + + +A
Sbjct: 132 DGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFS 177
Score = 36.7 bits (86), Expect = 9e-04
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 74 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 129
A+ + +E + FK A D GT+ K L V+ + G+ + E+ + E + N
Sbjct: 2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN 61
Query: 130 SKVRYEDFVKIA 141
+ + +F+ +
Sbjct: 62 GTIDFPEFLTMM 73
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 123 bits (311), Expect = 4e-37
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
M+ + E+ I EF+E F LF ++ G+I + EL+ +MRSLG+SP+ AE+ + E
Sbjct: 1 MSQNLTEEQIAEFKEAFALFDKDNSGSI-SASELATVMRSLGLSPSEAEVADLMNEIDVD 59
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
+ F +FL +M K D +E+++AFK D G + A LKHVL + GE L+
Sbjct: 60 GNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTD 119
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
EVD++ RE + + ++ + F +
Sbjct: 120 AEVDEMLREVSDG-SGEINIKQFAAL 144
Score = 46.7 bits (112), Expect = 2e-07
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 1 MAHHFREQDI-DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
M+ + D E E F +F + +G I + EL ++ S+G T AE+ + L E
Sbjct: 73 MSRQLKCNDSEQELLEAFKVFDKNGDGLI-SAAELKHVLTSIGEKLTDAEVDEMLREVSD 131
Query: 55 KGGKLSFPDFLKVM 68
G+++ F ++
Sbjct: 132 GSGEINIKQFAALL 145
Score = 36.3 bits (85), Expect = 9e-04
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 74 AEDIPKEVVDAFKAA----DTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMN 129
++++ +E + FK A D SG++ A L V+ + G S EV + E +V N
Sbjct: 2 SQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGN 61
Query: 130 SKVRYEDFVKIA 141
+ + +F+ +
Sbjct: 62 HAIEFSEFLALM 73
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 125 bits (315), Expect = 4e-37
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 4/142 (2%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKGGK 58
+ F + + EF+E F L ++ G I + +++ SLG T EL +AE G
Sbjct: 47 VFAMFTQHQVQEFKEAFQLIDQDKDGFI-SKNDIRATFDSLGRLCTEQELDSMVAEAPGP 105
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVD 118
++F FL + D +V+AF D G + LK L WGE S EVD
Sbjct: 106 INFTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVD 164
Query: 119 QIFREANVTMNSKVRYEDFVKI 140
Q EA + N + + F +I
Sbjct: 165 QALSEAPIDGNGLIDIKKFAQI 186
Score = 41.5 bits (98), Expect = 2e-05
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 1 MAHHFREQDI-DEFRECFFLFAR-NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
D D F LF +G + L + + G + E+ + L+E
Sbjct: 115 FGDRIAGTDEEDVIVNAFNLFDEGDGKC-KEETLKRSLTTWGEKFSQDEVDQALSEAPID 173
Query: 55 KGGKLSFPDFLKVMHTHSKAED 76
G + F +++ T E+
Sbjct: 174 GNGLIDIKKFAQIL-TKGAKEE 194
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 118 bits (299), Expect = 2e-35
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE-KGGKLSFPD 63
D+ +ECF +F ++ G + +++EL +RSLG +PT AEL + +
Sbjct: 2 AS-ADQIQECFQIFDKDNDGKV-SIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLAT 59
Query: 64 FLKVMHTHSKAEDIP-KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 122
F V K KE++DAF+A D +GT+ L+ +L+N G+ L+S EV+++ +
Sbjct: 60 FKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMK 119
Query: 123 EANVTMNSKVRYEDFVKIACAPVP 146
E +V+ + + YE FV + P
Sbjct: 120 EVSVSGDGAINYESFVDMLVTGYP 143
Score = 40.6 bits (96), Expect = 2e-05
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 6 REQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKL 59
+ E + F + NGTI EL ++ +LG + T +E+++ + E G +
Sbjct: 71 PTEQSKEMLDAFRALDKEGNGTI-QEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAI 129
Query: 60 SFPDFLKVM 68
++ F+ ++
Sbjct: 130 NYESFVDML 138
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 117 bits (296), Expect = 5e-35
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
+ + EF+E F LF G I T + L +++ G+ A + E GK+
Sbjct: 2 DDQVSEFKEAFELFDSERTGFI-TKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQ 60
Query: 61 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI 120
FP+FL +M K + AF+ D +G +P L+ L+N G+ L E +
Sbjct: 61 FPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEF 120
Query: 121 FREANVTMNSKVRYEDFVKI 140
++RY++F+
Sbjct: 121 LGITETE-KGQIRYDNFINT 139
Score = 42.1 bits (100), Expect = 6e-06
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 1 MAHHFREQDI-DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
M ++ D R+ F F G I L + +LG E ++L
Sbjct: 68 MGRRMKQTTSEDILRQAFRTFDPEGTGYI-PKAALQDALLNLGDRLKPHEFAEFLGITET 126
Query: 55 KGGKLSFPDFLKVMHT 70
+ G++ + +F+ M T
Sbjct: 127 EKGQIRYDNFINTMFT 142
Score = 38.2 bits (90), Expect = 2e-04
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 74 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 133
+D E +AF+ D+ ++G + + L+ VL +G + +++F EA+ T N K++
Sbjct: 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQ 60
Query: 134 YEDFVKIA 141
+ +F+ +
Sbjct: 61 FPEFLSMM 68
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 116 bits (294), Expect = 1e-34
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 5 FREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEK------G 56
F + D+F+E F LF R I T ++ I R+LG +PT AE+ K L
Sbjct: 2 FSKAAADDFKEAFLLFDRTGDAKI-TASQVGDIARALGQNPTNAEINKILGNPSKEEMNA 60
Query: 57 GKLSFPDFLKVMHTHSKAED--IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
++F +FL ++ + +D ++ V+ + D +GTV L+HVL GE ++
Sbjct: 61 AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTE 120
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
+EV+++ + N + YE FVK
Sbjct: 121 EEVEELMKGQ-EDSNGCINYEAFVKH 145
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 116 bits (294), Expect = 2e-34
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 5 FREQDIDEFRECFFLF----ARNGTIKTLDELSVIMRSLGMSPTIAELKKYL---AEKGG 57
+ +ID+ ++ F LF R+G + +L + R LG++P ++
Sbjct: 3 LSQDEIDDLKDVFELFDFWDGRDGAV-DAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEK 61
Query: 58 KLSFPDFLKVMHTHSKAE-DIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE 116
L F +FL E + ++AFK D G + L+HVL GE LS ++
Sbjct: 62 SLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDED 121
Query: 117 VDQIFREANVTMNS--KVRYEDFVKIACA-PVPD 147
VD+I + ++ + V+YEDFVK A P PD
Sbjct: 122 VDEIIKLTDLQEDLEGNVKYEDFVKKVMAGPYPD 155
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 115 bits (290), Expect = 5e-34
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 10 IDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGKLSFP 62
++ F LF + G I D L +R++G +PT ++ + L+
Sbjct: 3 TRANKDIFTLFDKKGQGAI-AKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Query: 63 DFLKVMHTHSKAED-----IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 117
++ + K D ++ V AF+ D +G V L+++L GE L+ EV
Sbjct: 62 QITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEV 121
Query: 118 DQIFREANVTMNSKVRYEDFVKI 140
D++ + V N ++ Y+ F++
Sbjct: 122 DELLKGVEVDSNGEIDYKKFIED 144
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 1 MAHHFREQD------IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYL 52
+ + +E D ++F + F +F + G + ++ +L ++ LG T AE+ + L
Sbjct: 67 IEVNEKELDATTKAKTEDFVKAFQVFDKESTGKV-SVGDLRYMLTGLGEKLTDAEVDELL 125
Query: 53 AE----KGGKLSFPDFLKVM 68
G++ + F++ +
Sbjct: 126 KGVEVDSNGEIDYKKFIEDV 145
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 113 bits (285), Expect = 3e-33
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 5 FREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE------KG 56
F + ++EF+E F LF R G I + +MR+LG +PT AE+ K L K
Sbjct: 4 FNKDQLEEFKEAFELFDRVGDGKI-LYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKS 62
Query: 57 GKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
++ F FL ++ +K + ++ ++ F+ D +G V L+HVL GE ++
Sbjct: 63 RRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTE 122
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
+EV+ + + N + YE F+K
Sbjct: 123 EEVETVL-AGHEDSNGCINYEAFLKH 147
Score = 43.0 bits (102), Expect = 4e-06
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 1 MAHHFREQDID---EFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE- 54
+ + + ++ E F +F + NG + EL ++ +LG T E++ LA
Sbjct: 74 LQAVAKNRGQGTYEDYLEGFRVFDKEGNGKV-MGAELRHVLTTLGEKMTEEEVETVLAGH 132
Query: 55 --KGGKLSFPDFLKVM 68
G +++ FLK +
Sbjct: 133 EDSNGCINYEAFLKHI 148
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 112 bits (284), Expect = 4e-33
Identities = 50/140 (35%), Positives = 78/140 (55%), Gaps = 7/140 (5%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
E+ E RE F LF + GTI + EL V MR+LG P E+KK ++E GK++
Sbjct: 2 EEQKQEIREAFDLFDADGTGTI-DVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMN 60
Query: 61 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI 120
F DFL VM +D +E++ AFK D ++G + K LK V GE L+ +E+ ++
Sbjct: 61 FGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEM 120
Query: 121 FREANVTMNSKVRYEDFVKI 140
EA+ + +V ++F++I
Sbjct: 121 IDEADRDGDGEVSEQEFLRI 140
Score = 45.2 bits (108), Expect = 6e-07
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQD-IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
M E+D +E + F LF G I + L + + LG + T EL++ + E
Sbjct: 68 MTQKMSEKDTKEEILKAFKLFDDDETGKI-SFKNLKRVAKELGENLTDEELQEMIDEADR 126
Query: 55 -KGGKLSFPDFLKVM 68
G++S +FL++M
Sbjct: 127 DGDGEVSEQEFLRIM 141
Score = 36.7 bits (86), Expect = 7e-04
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
+E+ +AF D +GT+ K LK + G +E+ ++ E + K+ + DF+
Sbjct: 6 QEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFL 65
Query: 139 KIA 141
+
Sbjct: 66 TVM 68
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 113 bits (285), Expect = 5e-33
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 7/146 (4%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
+ E+ E E F LF N G + EL V M++LG E+ + E
Sbjct: 13 LNSELLEEQKQEIYEAFSLFDMNNDGFL-DYHELKVAMKALGFELPKREILDLIDEYDSE 71
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
+ + DF VM D E+ AF+ D +G + K L+ V GE L+
Sbjct: 72 GRHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTD 131
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
+E+ + E ++ + ++ +F+ I
Sbjct: 132 EELRAMIEEFDLDGDGEINENEFIAI 157
Score = 44.1 bits (105), Expect = 2e-06
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQD-IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
M ++D +DE + F LF G I ++ L + + LG + T EL+ + E
Sbjct: 85 MGEKILKRDPLDEIKRAFQLFDDDHTGKI-SIKNLRRVAKELGETLTDEELRAMIEEFDL 143
Query: 55 -KGGKLSFPDFLKVM 68
G+++ +F+ +
Sbjct: 144 DGDGEINENEFIAIC 158
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
+E+ +AF D G + LK + G L +E+ + E + ++Y+DF
Sbjct: 23 QEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFY 82
Query: 139 KIA 141
+
Sbjct: 83 IVM 85
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 117 bits (295), Expect = 3e-32
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 7/146 (4%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
E+ I EF+E F LF ++ GTI T EL +MRSLG +PT AEL+ + E
Sbjct: 302 TRDQLTEEQIAEFKEAFSLFDKDGDGTI-TTKELGTVMRSLGQNPTEAELQDMINEVDAD 360
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
G + FP+FL +M K D +E+ +AF+ D +G + A L+HV+ N GE L+
Sbjct: 361 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTD 420
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
+EVD++ REA++ + +V YE+FV++
Sbjct: 421 EEVDEMIREADIDGDGQVNYEEFVQM 446
Score = 66.1 bits (161), Expect = 1e-13
Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 27/150 (18%)
Query: 3 HHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE-----KGG 57
F+ + + + E ++ + G T AE+K +
Sbjct: 239 DFFKSAMPEGYIQ---------------ERTIFFKDDGNYKTRAEVKFEGDTLVNRIELK 283
Query: 58 KLSFPDFLKVMHTHSKA-------EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE 110
+ F + ++ + E+ E +AF D GT+ K L V+ + G+
Sbjct: 284 GIDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ 343
Query: 111 GLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ E+ + E + N + + +F+ +
Sbjct: 344 NPTEAELQDMINEVDADGNGTIDFPEFLTM 373
Score = 44.5 bits (105), Expect = 3e-06
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQD-IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
MA ++ D +E RE F +F + NG I + EL +M +LG T E+ + + E
Sbjct: 374 MARKMKDTDSEEEIREAFRVFDKDGNGYI-SAAELRHVMTNLGEKLTDEEVDEMIREADI 432
Query: 55 -KGGKLSFPDFLKVM 68
G++++ +F+++M
Sbjct: 433 DGDGQVNYEEFVQMM 447
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 109 bits (274), Expect = 2e-31
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 2 AHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----K 55
E+ E RE F LF + GTI EL V MR+LG P E+KK ++E
Sbjct: 19 RVGLTEEQKQEIREAFDLFDTDGSGTI-DAKELKVAMRALGFEPKKEEIKKMISEIDKDG 77
Query: 56 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK 115
G + F +FL +M D +E++ AF+ D SGT+ K L+ V GE L+ +
Sbjct: 78 SGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEE 137
Query: 116 EVDQIFREANVTMNSKVRYEDFVKI 140
E+ ++ EA+ ++++ ++F++I
Sbjct: 138 ELQEMIAEADRNDDNEIDEDEFIRI 162
Score = 45.3 bits (108), Expect = 7e-07
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQDI-DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
M E+D +E + F LF +GTI T+ +L + + LG + T EL++ +AE
Sbjct: 90 MTAKMGERDSREEILKAFRLFDDDNSGTI-TIKDLRRVAKELGENLTEEELQEMIAEADR 148
Query: 55 -KGGKLSFPDFLKVM 68
++ +F+++M
Sbjct: 149 NDDNEIDEDEFIRIM 163
Score = 37.6 bits (88), Expect = 4e-04
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
+E+ +AF DT SGT+ AK LK + G +E+ ++ E + + + +E+F+
Sbjct: 28 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFL 87
Query: 139 KIA 141
+
Sbjct: 88 TMM 90
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 108 bits (272), Expect = 4e-31
Identities = 37/150 (24%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 1 MAHHFREQDIDEFRECFFLF---ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
E+ +EF+ F +F A +G+I + EL +MR LG +PT EL++ + E
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSI-STKELGKVMRMLGQNPTPEELQEMIDEVDE 66
Query: 55 -KGGKLSFPDFLKVMHTHSKAEDIP---KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE 110
G + F +FL +M K + +E+ D F+ D G + + LK +L GE
Sbjct: 67 DGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGE 126
Query: 111 GLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
++ +++++ ++ + + ++ Y++F++
Sbjct: 127 TITEDDIEELMKDGDKNNDGRIDYDEFLEF 156
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/78 (19%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 1 MAHHFREQDI----DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE 54
M ++ +E + F +F + +G I L+EL +++++ G + T ++++ + +
Sbjct: 81 MVRSMKDDSKGKSEEELSDLFRMFDKNADGYI-DLEELKIMLQATGETITEDDIEELMKD 139
Query: 55 ----KGGKLSFPDFLKVM 68
G++ + +FL+ M
Sbjct: 140 GDKNNDGRIDYDEFLEFM 157
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 108 bits (271), Expect = 5e-31
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 12/151 (7%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
M R ++I+E RE F F ++ G I +L MR++G PT EL + +
Sbjct: 1 MDRSLRPEEIEELREAFREFDKDKDGYI-NCRDLGNCMRTMGYMPTEMELIELSQQINMN 59
Query: 55 KGGKLSFPDFLKVMHTHSKAED----IPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW-G 109
GG + F DF+++M AE KE+ DAF+ DT G + L+ + G
Sbjct: 60 LGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLG 119
Query: 110 EGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ +++++I R+ ++ + +V +E+FV++
Sbjct: 120 HQVGHRDIEEIIRDVDLNGDGRVDFEEFVRM 150
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/63 (22%), Positives = 34/63 (53%)
Query: 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
+E+ +AF+ D K G + + L + + G + E+ ++ ++ N+ + V ++DFV
Sbjct: 11 EELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFV 70
Query: 139 KIA 141
++
Sbjct: 71 ELM 73
Score = 36.7 bits (86), Expect = 8e-04
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 13/80 (16%)
Query: 1 MAHHFREQDID-----EFRECFFLFARNGT--IKTLDELSVIMRS-LGMSPTIAELKKYL 52
M + D E R+ F F NG I + EL MR+ LG ++++ +
Sbjct: 73 MGPKLLAETADMIGVKELRDAFREFDTNGDGEI-STSELREAMRALLGHQVGHRDIEEII 131
Query: 53 AE----KGGKLSFPDFLKVM 68
+ G++ F +F+++M
Sbjct: 132 RDVDLNGDGRVDFEEFVRMM 151
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 106 bits (267), Expect = 3e-30
Identities = 34/147 (23%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 3 HHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KG 56
E+ I EF+ F +F + G I + EL +MR LG +PT EL + E
Sbjct: 12 AFLSEEMIAEFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEEVDEDGS 70
Query: 57 GKLSFPDFLKVM---HTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLS 113
G + F +FL +M +E+ + F+ D G + + L +L GE ++
Sbjct: 71 GTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVT 130
Query: 114 SKEVDQIFREANVTMNSKVRYEDFVKI 140
++++ + ++++ + ++ +++F+K+
Sbjct: 131 EEDIEDLMKDSDKNNDGRIDFDEFLKM 157
Score = 42.6 bits (101), Expect = 7e-06
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 1 MAHHFREQDI----DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE 54
M +E +E CF +F + +G I ++EL I+R+ G T +++ + +
Sbjct: 82 MVRQMKEDAKGKSEEELANCFRIFDKNADGFI-DIEELGEILRATGEHVTEEDIEDLMKD 140
Query: 55 ----KGGKLSFPDFLKVM 68
G++ F +FLK+M
Sbjct: 141 SDKNNDGRIDFDEFLKMM 158
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 104 bits (263), Expect = 8e-30
Identities = 28/151 (18%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 1 MAHHFREQDIDEFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
+ F F +G + + D++ +I+ LG+ T + +++ + E
Sbjct: 3 DVSKLSSNQVKLLETAFRDFETPEGSGRV-STDQIGIILEVLGIQQTKSTIRQLIDEFDP 61
Query: 55 -KGGKLSFPDFLKVM----HTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG 109
G + F F + E + +E+ +AF+ D +G + ++ +L
Sbjct: 62 FGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELD 121
Query: 110 EGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
E LSS+++D + E + + V +E+F+ +
Sbjct: 122 ETLSSEDLDAMIDEIDADGSGTVDFEEFMGV 152
Score = 43.3 bits (103), Expect = 3e-06
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQDI-DEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
+ + + E RE F L+ + NG I + D + I+ L + + +L + E
Sbjct: 80 LGEEVNPEQMQQELREAFRLYDKEGNGYI-STDVMREILAELDETLSSEDLDAMIDEIDA 138
Query: 55 -KGGKLSFPDFLKVM 68
G + F +F+ VM
Sbjct: 139 DGSGTVDFEEFMGVM 153
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 72 SKAEDIPKEVVDAFKAA----DTT-KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANV 126
+ V + A +T SG V + +L G + + Q+ E +
Sbjct: 2 GDVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDP 61
Query: 127 TMNSKVRYEDFVKIA 141
N + ++ F I
Sbjct: 62 FGNGDIDFDSFKIIG 76
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 93.9 bits (234), Expect = 4e-25
Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
D E E F + G I ++ EL+ + S G+ ++A +K L G+++
Sbjct: 23 MNDNQELMEWFRAVDTDGSGAI-SVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEIT 81
Query: 61 FPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQI 120
F +F + H + + F+ D++ G + + ++ L++ G +S + +
Sbjct: 82 FDEFKDLHHFI-------LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQAL 134
Query: 121 FREANVTMNSKVRYEDFVKI 140
R+ + + ++D+V++
Sbjct: 135 MRKFDRQRRGSLGFDDYVEL 154
Score = 47.7 bits (114), Expect = 1e-07
Identities = 14/85 (16%), Positives = 35/85 (41%)
Query: 56 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK 115
P V ++ + +E+++ F+A DT SG + L L + G S
Sbjct: 4 HHHHHMPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLA 63
Query: 116 EVDQIFREANVTMNSKVRYEDFVKI 140
+++ + + ++ +++F +
Sbjct: 64 TTEKLLHMYDKNHSGEITFDEFKDL 88
Score = 45.0 bits (107), Expect = 1e-06
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 10 IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPD 63
I RE F +G + +E+ + S G + +K+ ++ G L F D
Sbjct: 92 ILSMREGFRKRDSSGDGRL-DSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDD 150
Query: 64 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
++++ V + F D ++G V
Sbjct: 151 YVELSIFV-------CRVRNVFAFYDRERTGQV 176
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 93.0 bits (232), Expect = 5e-25
Identities = 26/146 (17%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
+A E++I +E F + + G I T +EL ++ +G + +E+ +
Sbjct: 17 IAESLSEEEIAGLKEMFNMIDADKSGQI-TFEELKAGLKRVGANLKESEILDLMQAADVD 75
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
G + + +F+ H + + AF D SG + L+ G+
Sbjct: 76 NSGTIDYKEFIAAT-LHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEE--FGVED 132
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
++++ R+ + + ++ Y +FV +
Sbjct: 133 VRIEELMRDVDQDNDGRIDYNEFVAM 158
Score = 41.3 bits (98), Expect = 2e-05
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124
L+V+ E+I + + F D KSG + + LK L G L E+ + + A
Sbjct: 14 LRVIAESLSEEEI-AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAA 72
Query: 125 NVTMNSKVRYEDFV 138
+V + + Y++F+
Sbjct: 73 DVDNSGTIDYKEFI 86
Score = 37.5 bits (88), Expect = 5e-04
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 1 MAHHFREQDIDEFRECFFLFARNGT--IKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
H + + D F F ++G+ I T DEL G+ +++ + +
Sbjct: 89 TLHLNKIEREDHLFAAFTYFDKDGSGYI-TPDELQQACEEFGVED--VRIEELMRDVDQD 145
Query: 55 KGGKLSFPDFLKVMHTHS 72
G++ + +F+ +M S
Sbjct: 146 NDGRIDYNEFVAMMQKGS 163
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 93.1 bits (232), Expect = 7e-25
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 2 AHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----K 55
A E++I +E F + + GTI T DEL ++ +G +E+K + K
Sbjct: 1 AERLSEEEIGGLKELFKMIDTDNSGTI-TFDELKDGLKRVGSELMESEIKDLMDAADIDK 59
Query: 56 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK 115
G + + +F+ H + + +V AF D SG + ++ + GL
Sbjct: 60 SGTIDYGEFIAAT-VHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKD--FGLDDI 116
Query: 116 EVDQIFREANVTMNSKVRYEDFVKI 140
+D + +E + + ++ Y +F +
Sbjct: 117 HIDDMIKEIDQDNDGQIDYGEFAAM 141
Score = 48.4 bits (116), Expect = 7e-08
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 16/117 (13%)
Query: 1 MAHHFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
H + + + F F + +G I TLDE+ + G+ + + E
Sbjct: 72 TVHLNKLEREENLVSAFSYFDKDGSGYI-TLDEIQQACKDFGLDD--IHIDDMIKEIDQD 128
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKE-------VVDAFKAADTTKSGTVPAKYLKHV 104
G++ + +F +M I + + DA D + + + H
Sbjct: 129 NDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKHHH 185
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 93.4 bits (233), Expect = 7e-25
Identities = 25/148 (16%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
+A H + +I+ R F + GT+ + E+ ++ +G ++ + L +
Sbjct: 47 IAKHLCDVEINNLRNIFIALDVDNSGTL-SSQEILDGLKKIGYQKIPPDIHQVLRDIDSN 105
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV--NWGEGL 112
G++ + DFL + + + FK D +G + + LK + + L
Sbjct: 106 ASGQIHYTDFLAAT-IDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPL 164
Query: 113 SSKEVDQIFREANVTMNSKVRYEDFVKI 140
K +D + +E ++ + ++ + +F+ +
Sbjct: 165 IDKAIDSLLQEVDLNGDGEIDFHEFMLM 192
Score = 45.7 bits (109), Expect = 7e-07
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124
L ++ H +I + + F A D SGT+ ++ + L G ++ Q+ R+
Sbjct: 44 LTIIAKHLCDVEI-NNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDI 102
Query: 125 NVTMNSKVRYEDFVKIA 141
+ + ++ Y DF+
Sbjct: 103 DSNASGQIHYTDFLAAT 119
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 89.8 bits (223), Expect = 2e-23
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 27/166 (16%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDEL-----SVIMRSLGMSPTIAELKKYLA 53
+ I + F N G I TLDE+ I L +P + +
Sbjct: 10 KTDFDNPRWIKRHKHMFDFLDINGNGKI-TLDEIVSKASDDICAKLEATPEQTKRHQVCV 68
Query: 54 E---------KGGKLSFPDFLKVMHTHSKAE----------DIPKEVVDAFKAADTTKSG 94
E G +++FP FL + +E I + F D SG
Sbjct: 69 EAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSG 128
Query: 95 TVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
T+ K G S ++ + FR ++ + ++ +
Sbjct: 129 TITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQ 174
Score = 38.6 bits (90), Expect = 2e-04
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 7 EQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
+ F +F + +GTI TLDE + G+SP+ + + G L
Sbjct: 109 TLIREWGDAVFDIFDKDGSGTI-TLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLD 167
Query: 61 FPDFLKVM 68
+ +
Sbjct: 168 VDEMTRQH 175
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 86.8 bits (215), Expect = 2e-22
Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDEL-----SVIMRSLGMSPTIAELKKYLAE----- 54
+ I + F N G I +LDE+ +++ +LG +P A+ K E
Sbjct: 12 PRWIGRHKHMFNFLDVNHNGKI-SLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGG 70
Query: 55 ----KGGKLSFPDFLKVM----------HTHSKAEDIPKEVVDAFKAADTTKSGTVPAKY 100
G + +P +++ + ++ I F D ++G +
Sbjct: 71 AGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDE 130
Query: 101 LKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
K G SS++ ++ FR ++ + ++ ++ +
Sbjct: 131 WKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
Score = 36.7 bits (85), Expect = 0.001
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 1 MAHHFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
A + F + + NG I TLDE ++ G+ + + ++
Sbjct: 99 YAKNEPTLIRIWGDALFDIVDKDQNGAI-TLDEWKAYTKAAGIIQSSEDCEETFRVCDID 157
Query: 55 KGGKLSFPDFLKVM 68
+ G+L + +
Sbjct: 158 ESGQLDVDEMTRQH 171
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 85.0 bits (211), Expect = 1e-21
Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 15/151 (9%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
+A + D+++ + F + + G I T ++L + G L +
Sbjct: 42 IAQQSNDYDVEKLKSTFLVLDEDGKGYI-TKEQLKKGLEKDG-LKLPYNFDLLLDQIDSD 99
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
GK+ + +F+ + K + AF+ D G + L H+L N + +
Sbjct: 100 GSGKIDYTEFIAAALDRKQLSK--KLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNI 157
Query: 115 -----KEVDQIFREANVTMNSKVRYEDFVKI 140
V ++ R+ + + K+ + +F ++
Sbjct: 158 TQRDVNRVKRMIRDVDKNNDGKIDFHEFSEM 188
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 82.7 bits (205), Expect = 5e-21
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 9 DIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSP-TIAELKKYLAE----KGGKLSF 61
D F ++ G I + EL + + +P ++ ++ ++F
Sbjct: 5 DQSFLWNVFQRVDKDRSGVI-SDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 63
Query: 62 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 121
+F V + + F+ D SG + LK L +G LS + D +
Sbjct: 64 SEFTGVWKY-------ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILI 116
Query: 122 REANVTMNSKVRYEDFVKI 140
R+ + ++ ++DF++
Sbjct: 117 RKFDRQGRGQIAFDDFIQG 135
Score = 41.5 bits (98), Expect = 2e-05
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 10 IDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAEL----KKYLAEKGGKLSFPD 63
I +++ F + +G I +EL + G + +K+ + G+++F D
Sbjct: 73 ITDWQNVFRTYDRDNSGMI-DKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDD 131
Query: 64 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
F++ + + D F+ DT + G +
Sbjct: 132 FIQGCIV-------LQRLTDIFRRYDTDQDGWI 157
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 84.2 bits (208), Expect = 9e-21
Identities = 27/171 (15%), Positives = 62/171 (36%), Gaps = 32/171 (18%)
Query: 1 MAHHFREQ---DIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIA------ELK 49
MA + +F E + F + G + EL +++ L + A E+K
Sbjct: 3 MAESHLQSSLITASQFFEIWLHFDADGSGYL-EGKELQNLIQELLQARKKAGLELSPEMK 61
Query: 50 KYLAE----KGGKLSFPDFLKVMHT--------HSKAEDIPKEVVDAFKAADTTKSGTVP 97
++ + GK+ + V+ T + +E + ++ DT SG +
Sbjct: 62 TFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIE 121
Query: 98 AKYLKHVLVNWGEGLSS--------KEVDQIFREANVTMNSKVRYEDFVKI 140
+ LK+ L + E + + D + + + + K+ + ++
Sbjct: 122 TEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARL 172
Score = 55.6 bits (134), Expect = 3e-10
Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 27/164 (16%)
Query: 6 REQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--------- 54
+ + +EF + + + +G I +EL ++ L LAE
Sbjct: 98 QLKSCEEFMKTWRKYDTDHSGFI-ETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLF 156
Query: 55 ---KGGKLSFPDFLKVMHT-------HSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHV 104
GKL + +++ + KE AF+ D +G + L +
Sbjct: 157 DSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDAL 216
Query: 105 LVNWGEGLSSKEVDQIFREANVTMNS-----KVRYEDFVKIACA 143
L + E + + + K+ D I A
Sbjct: 217 LKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALILSA 260
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 78.0 bits (193), Expect = 2e-19
Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG-GKLSFPD 63
+I + F + G++ +++E + L +P + + G G++ F +
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSL-SVEEFMS-LPELQQNPLVQRVIDIFDTDGNGEVDFKE 59
Query: 64 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-WGEGLSSKE----VD 118
F++ + S D +++ AF+ D K G + L VL G L + VD
Sbjct: 60 FIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVD 119
Query: 119 QIFREANVTMNSKVRYEDFVKI 140
+ A+ + ++ +E+F +
Sbjct: 120 KTIINADKDGDGRISFEEFCAV 141
Score = 32.6 bits (75), Expect = 0.019
Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 1 MAHHFREQDI-DEFRECFFLFARNGTIK-TLDELSVIMRSL-GMSPTIAELKKYLAE--- 54
++ + D + R F ++ + + EL +++ + G + +L++ + +
Sbjct: 64 VSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTII 123
Query: 55 -----KGGKLSFPDFLKVM 68
G++SF +F V+
Sbjct: 124 NADKDGDGRISFEEFCAVV 142
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 79.9 bits (197), Expect = 7e-19
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 15/146 (10%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
E+D + R+ F A + G + +L ++ + LKK
Sbjct: 112 SKPMLSEEDTNILRQLFLSSAVSGSGKF-SFQDLKQVLAKYADTIPEGPLKKLFVMVEND 170
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
G++S+ + V + +V F+ DT +GT+ K + V G
Sbjct: 171 TKGRMSYITLVAVANDL-------AALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KK 222
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
D +FR A+ + V + ++V +
Sbjct: 223 SVQDALFRYADEDESDDVGFSEYVHL 248
Score = 60.6 bits (147), Expect = 8e-12
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 8 QDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSF 61
D+ F N GT+ + E LG + + + F
Sbjct: 185 NDLAALVADFRKIDTNSNGTL-SRKEFREHFVRLGFDKK-SVQDALFRYADEDESDDVGF 242
Query: 62 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWG-EGLSSKEVDQI 120
+++ + + AD KSG + + ++ VL + + K+ +
Sbjct: 243 SEYVHLGLCLLVLRI-------LYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQ 295
Query: 121 FREANVTMNSKVRYEDFVKI 140
F +V + + Y++FV +
Sbjct: 296 FSVVDVDDSKSLSYQEFVML 315
Score = 48.3 bits (115), Expect = 1e-07
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 7/137 (5%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKY---LAEKGGKLSF 61
Q E + + + + R AE ++ L + S
Sbjct: 47 AQKEQEQKAKLAEYDQKVQNEFDARERAER-EREAARGDAAAEKQRLASLLKDLEDDASG 105
Query: 62 PDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 121
+ L+ ED + F ++ + SG + LK VL + + + + ++F
Sbjct: 106 YNRLRPSKPMLSEEDT-NILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLF 164
Query: 122 REANVTMNSKVRYEDFV 138
++ Y V
Sbjct: 165 VMVENDTKGRMSYITLV 181
Score = 30.9 bits (70), Expect = 0.14
Identities = 7/63 (11%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 11 DEFRECFFLFARNGTIKTLDELSVIMRSLGMS-PTIAELKKYLAE----KGGKLSFPDFL 65
+ F F ++G + + +E+ ++ + + + + LS+ +F+
Sbjct: 257 ILYA--FADFDKSGQL-SKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFV 313
Query: 66 KVM 68
++
Sbjct: 314 MLV 316
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 74.2 bits (183), Expect = 1e-18
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
++ E++E F LF ++ + T +EL +MR+LG +PT ++ + + +
Sbjct: 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKL-TAEELGTVMRALGANPTKQKISEIVKDYDKD 62
Query: 55 KGGKLSFPDFLKVMHTHSKAED 76
GK FL +M + + D
Sbjct: 63 NSGKFDQETFLTIMLEYGQEVD 84
Score = 40.7 bits (96), Expect = 9e-06
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
+E +AF+ D + A+ L V+ G + +++ +I ++ + + K E F+
Sbjct: 14 QEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFL 73
Query: 139 KI 140
I
Sbjct: 74 TI 75
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 77.0 bits (190), Expect = 2e-18
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 16/154 (10%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
I F R+ ++ DE + LG+ AE + +
Sbjct: 27 QCLSRGASGIQGLARFFRQLDRDGSRSL-DADEFRQGLAKLGLVLDQAEAEGVCRKWDRN 85
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK-------HVLVN 107
G L +FL+ + ++ + AF D + G V L+ H V
Sbjct: 86 GSGTLDLEEFLRAL-RPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVR 144
Query: 108 WGEGLSSKEVDQIFREANVTMNS-KVRYEDFVKI 140
GE + + + + + +V +F
Sbjct: 145 SGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDY 178
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 63 DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 122
+ L+ A I + + F+ D S ++ A + L G L E + + R
Sbjct: 22 EKLRAQCLSRGASGI-QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCR 80
Query: 123 EANVTMNSKVRYEDFVKI 140
+ + + + E+F++
Sbjct: 81 KWDRNGSGTLDLEEFLRA 98
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 76.2 bits (188), Expect = 3e-18
Identities = 27/158 (17%), Positives = 57/158 (36%), Gaps = 22/158 (13%)
Query: 1 MAHHFREQD-IDEFRECFFLFARN--GTIKTLDELSV-----------IMRSLGMSPTIA 46
M + E + F N G + EL + L S A
Sbjct: 29 MGSKLTTLEETKELTQIFRQLDNNGDGQL-DRKELIEGYRKLMQWKGDTVSDLDSSQIEA 87
Query: 47 ELKKYLAE----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 102
E+ L + G + + +F+ V + + ++ AF+ D+ SG + + L
Sbjct: 88 EVDHILQSVDFDRNGYIEYSEFVTVC-MDKQLLLSRERLLAAFQQFDSDGSGKITNEELG 146
Query: 103 HVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ + + Q+ +E + + +V +E+FV++
Sbjct: 147 RLFGV--TEVDDETWHQVLQECDKNNDGEVDFEEFVEM 182
Score = 36.1 bits (84), Expect = 0.002
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 64 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK-----------HVLVNWGEGL 112
+ M + + KE+ F+ D G + K L + +
Sbjct: 25 AMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQ 84
Query: 113 SSKEVDQIFREANVTMNSKVRYEDFVKIA 141
EVD I + + N + Y +FV +
Sbjct: 85 IEAEVDHILQSVDFDRNGYIEYSEFVTVC 113
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 73.7 bits (182), Expect = 6e-18
Identities = 16/135 (11%), Positives = 43/135 (31%), Gaps = 13/135 (9%)
Query: 14 RECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKV 67
F N G + + +E+ + L+ G++ +F K
Sbjct: 3 EALFKEIDVNGDGAV-SYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 68 MHTHSKAEDIPKE--VVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREAN 125
+ + + + +K D G + + + G ++V + +A+
Sbjct: 62 YGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGI----EKVAEQVMKAD 117
Query: 126 VTMNSKVRYEDFVKI 140
+ + E+F++
Sbjct: 118 ANGDGYITLEEFLEF 132
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 75.0 bits (185), Expect = 6e-18
Identities = 24/156 (15%), Positives = 58/156 (37%), Gaps = 23/156 (14%)
Query: 1 MAHHF--REQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE-- 54
MAH I E F+ NG++ + E+ ++ S+G+ ++ + L
Sbjct: 27 MAHELSVINNHIKYINELFYKLDTNHNGSL-SHREIYTVLASVGIKK--WDINRILQALD 83
Query: 55 --KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGL 112
G +++ +F+ + E + AF D + G + + ++ + L
Sbjct: 84 INDRGNITYTEFMAGCYRWKNIES--TFLKAAFNKIDKDEDGYISKSDIVSLVH--DKVL 139
Query: 113 SSKEVDQIFREA--------NVTMNSKVRYEDFVKI 140
+ ++D F + +K+ +++F
Sbjct: 140 DNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDY 175
Score = 39.2 bits (92), Expect = 1e-04
Identities = 13/75 (17%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 65 LKVMHTH-SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFRE 123
+ +M S + K + + F DT +G++ + + VL + G + ++++I +
Sbjct: 24 INIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQA 81
Query: 124 ANVTMNSKVRYEDFV 138
++ + Y +F+
Sbjct: 82 LDINDRGNITYTEFM 96
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 70.9 bits (174), Expect = 3e-16
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 20/144 (13%)
Query: 7 EQDIDEFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYL---------AEKG 56
Q D F A ++G I DEL + G++ +
Sbjct: 29 GQTQDPLYGYFAAVAGQDGQI-DADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMS 87
Query: 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE 116
G + F +F ++ F + DT +SGTV + L+ L G LS +
Sbjct: 88 GTMGFNEFKELWAVL-------NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQA 140
Query: 117 VDQIFREANVTMNSKVRYEDFVKI 140
V+ I + + N K+ ++D++
Sbjct: 141 VNSIAKRYST--NGKITFDDYIAC 162
Score = 39.4 bits (92), Expect = 1e-04
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 8 QDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPD 63
++ +R+ F F + GT+ EL + ++G + + GK++F D
Sbjct: 100 AVLNGWRQHFISFDTDRSGTVDP-QELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDD 158
Query: 64 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
++ + + D+F+ DT + G V
Sbjct: 159 YIACCVKL-------RALTDSFRRRDTAQQGVV 184
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 70.6 bits (173), Expect = 5e-16
Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 28/164 (17%)
Query: 2 AHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLG--MSPTIAELKKYLAE--- 54
+ + + F F + G + +DE+ + ++ T +++K
Sbjct: 27 VEDLHPKMLSRLYKRFDTFDLDSDGKM-EMDEVLYWPDRMRQLVNATDEQVEKMRDAVRV 85
Query: 55 --------KGGKLSFPDFLKVMHTHSKAEDIPKEV----------VDAFKAADTTKSGTV 96
L D+++ ++AE + + D GTV
Sbjct: 86 FFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTV 145
Query: 97 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
LK ++ + + + F +A+ + K+ + V +
Sbjct: 146 DVDELKTMMKAF--DVPQEAAYTFFEKADTDKSGKLERTELVHL 187
Score = 31.7 bits (72), Expect = 0.059
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 5 FREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
+ D D +GT+ +DEL +M++ + + + K GKL
Sbjct: 134 YDVLDDD----------GDGTV-DVDELKTMMKAFDVPQ--EAAYTFFEKADTDKSGKLE 180
Query: 61 FPDFLKVMH 69
+ + +
Sbjct: 181 RTELVHLFR 189
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 67.6 bits (166), Expect = 5e-16
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 1 MAHHFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
E+ I EF+ F +F G I + EL +MR LG +PT EL + E
Sbjct: 10 ARAFLSEEMIAEFKAAFDMFDADGGGDI-STKELGTVMRMLGQNPTKEELDAIIEEVDED 68
Query: 55 KGGKLSFPDFLKVMHTHSKAE 75
G + F +FL +M K +
Sbjct: 69 GSGTIDFEEFLVMMVRQMKED 89
Score = 42.2 bits (100), Expect = 2e-06
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 75 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 134
E++ E AF D G + K L V+ G+ + +E+D I E + + + +
Sbjct: 16 EEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
Query: 135 EDFVKI 140
E+F+ +
Sbjct: 76 EEFLVM 81
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 70.2 bits (172), Expect = 5e-16
Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 22/161 (13%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSL----GMSPTIAE------- 47
+ R + + + G I + ++ +I + +S AE
Sbjct: 4 ITESERAYHLRKMKTRMQRVDVTGDGFI-SREDYELIAVRIAKIAKLSAEKAEETRQEFL 62
Query: 48 --LKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVV------DAFKAADTTKSGTVPAK 99
+ G ++S + ++ + + DT K G V
Sbjct: 63 RVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLP 122
Query: 100 YLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
K L G L+ + F + N ++ ++F+
Sbjct: 123 EFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVT 163
Score = 39.7 bits (93), Expect = 7e-05
Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 1 MAHHFREQDIDEFRECFFLFA-----RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE- 54
+ E+ + ++ ++G + +L E ++++G T +
Sbjct: 89 LLKMKGEEKAMAVIQSLIMYDCIDTDKDGYV-SLPEFKAFLQAVGPDLTDDKAITCFNTL 147
Query: 55 ---KGGKLSFPDFLKVMHTHSKAED 76
K G++S +FL ++ +
Sbjct: 148 DFNKNGQISRDEFLVTVNDFLFGLE 172
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 69.4 bits (170), Expect = 1e-15
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 26/161 (16%)
Query: 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAEL-KKYLAEKGGKLS 60
F + + F RN G + + +L + +L ++P + + + + ++
Sbjct: 22 GFSQASLLRLHHRFRALDRNKKGYL-SRMDLQQ-IGALAVNPLGDRIIESFFPDGSQRVD 79
Query: 61 FPDFLKVMHTHSKAEDIPKEVVD----------------AFKAADTTKSGTVPAKYLKHV 104
FP F++V+ ED E D AF+ D + G + + V
Sbjct: 80 FPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQV 139
Query: 105 LVN-WGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKI 140
L G ++ ++ D+ +EA+ + V + +F K
Sbjct: 140 LRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKS 180
Score = 31.6 bits (72), Expect = 0.057
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 6 REQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSL-GMSPTIAELKKYLAE-------- 54
++ F L+ +G I + E+ ++R + G+ T +L+
Sbjct: 109 LNSRRNKLHYAFQLYDLDRDGKI-SRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADED 167
Query: 55 KGGKLSFPDFLKVMHTHS 72
G +SF +F K +
Sbjct: 168 GDGAVSFVEFTKSLEKMD 185
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 69.4 bits (170), Expect = 2e-15
Identities = 19/145 (13%), Positives = 45/145 (31%), Gaps = 15/145 (10%)
Query: 2 AHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----K 55
+ + F R+ GT+ ++EL + G+ + + +
Sbjct: 42 LNTIPLDQYTRIYQWFMGVDRDRSGTL-EINELMMGQFPGGIRLSPQTALRMMRIFDTDF 100
Query: 56 GGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK 115
G +SF +F+ + + F +SGT+ + L G ++ +
Sbjct: 101 NGHISFYEFMAMYKFMEL-------AYNLFVMNARARSGTLEPHEILPALQQLGFYINQR 153
Query: 116 EVDQIFREANVTMNSKVRYEDFVKI 140
+ R + ++ I
Sbjct: 154 TSLLLHR-LFARGMAFCDLNCWIAI 177
Score = 45.2 bits (107), Expect = 1e-06
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124
+ + + F D +SGT+ L G LS + ++ R
Sbjct: 38 WFPLLNTIPLDQYT-RIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIF 96
Query: 125 NVTMNSKVRYEDFVK 139
+ N + + +F+
Sbjct: 97 DTDFNGHISFYEFMA 111
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 65.6 bits (161), Expect = 3e-15
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 7 EQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
E+ E +E F LF + G+I EL V MR+LG E+ + + E G +
Sbjct: 3 EEQKQEIKEAFDLFDTNKTGSI-DYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIG 61
Query: 61 FPDFLKVMHTHSKAED 76
F DFL +M K D
Sbjct: 62 FDDFLDIMTEKIKNRD 77
Score = 43.3 bits (103), Expect = 8e-07
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
+E+ +AF DT K+G++ LK + G + E+ ++ E + N + ++DF+
Sbjct: 7 QEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFL 66
Query: 139 KI 140
I
Sbjct: 67 DI 68
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 68.9 bits (168), Expect = 4e-15
Identities = 25/170 (14%), Positives = 50/170 (29%), Gaps = 35/170 (20%)
Query: 5 FREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLG--MSPTIAELKKYLAE------ 54
F D F + + F + G I EL R + + P + + +
Sbjct: 5 FANLDAAGFLQIWQHFDADDNGYI-EGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFM 63
Query: 55 ------KGGKLSFPDFLKVMHT----------HSKAEDIPKEVVDAFKAADTTKSGTVPA 98
G+L + ++ D E + ++ D SG + A
Sbjct: 64 SAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISA 123
Query: 99 KYLKHVLVNWGEGLSSK--------EVDQIFREANVTMNSKVRYEDFVKI 140
LK+ L + K D + + + + ++ D +I
Sbjct: 124 AELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARI 173
Score = 46.6 bits (110), Expect = 5e-07
Identities = 18/172 (10%), Positives = 51/172 (29%), Gaps = 32/172 (18%)
Query: 1 MAHHFREQDIDEFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE----- 54
+ EF + + + + + + EL ++ L + L E
Sbjct: 94 FRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAM 153
Query: 55 -------KGGKLSFPDFLKVMHT-----------HSKAEDIPKEVVDAFKAADTTKSGTV 96
K G+L D +++ S + ++ F D +++G +
Sbjct: 154 MKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGAL 213
Query: 97 PAKYLKHVLVNWGEGLSS--------KEVDQIFREANVTMNSKVRYEDFVKI 140
+ + + E + K + + ++ + K++ +
Sbjct: 214 EGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
Score = 28.5 bits (63), Expect = 0.88
Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 6 REQDIDEFRECFFLFARNGTIK-TLDELSVIMRSLGM----SPTIAELKKYLAE------ 54
+ + +F + F + + T E+ ++ + S + +L K+
Sbjct: 191 QVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCD 250
Query: 55 --KGGKLSFPDFLKVM 68
K GK+ + +
Sbjct: 251 MNKDGKIQKSELALCL 266
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 65.0 bits (159), Expect = 4e-15
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
MA QDI + F F N G I + EL +++LG T E+++ +AE
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKI-SSSELGDALKTLGS-VTPDEVRRMMAEIDTD 58
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAF 85
G +SF +F + K+V F
Sbjct: 59 GDGFISFDEFTDFA---RANRGLVKDVSKIF 86
Score = 36.5 bits (85), Expect = 3e-04
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 68 MHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVT 127
M +DI + FK DT G + + L L G ++ EV ++ E +
Sbjct: 1 MAAEDTPQDI-ADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTD 58
Query: 128 MNSKVRYEDFVKI 140
+ + +++F
Sbjct: 59 GDGFISFDEFTDF 71
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 64.7 bits (158), Expect = 1e-14
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 2 AHHFREQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----K 55
+ ++ F+E + F NG I + L ++ LG+ T ELKK + E
Sbjct: 23 SDEDLPSKLEGFKEKYMEFDLNGNGDI-DIMSLKRMLEKLGVPKTHLELKKLIGEVSSGS 81
Query: 56 GGKLSFPDFLKVM 68
G S+PDFL++M
Sbjct: 82 GETFSYPDFLRMM 94
Score = 39.7 bits (93), Expect = 3e-05
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 79 KEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
+ + + D +G + LK +L G + E+ ++ E + Y DF+
Sbjct: 32 EGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFL 91
Query: 139 KI 140
++
Sbjct: 92 RM 93
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 64.7 bits (158), Expect = 2e-14
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 46 AELKKYLAE----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYL 101
K L E + + D L VM E+ E+ F + + A+ L
Sbjct: 3 PTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESL 62
Query: 102 KHVLVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ G EG+S ++ + RE ++ + + +F +
Sbjct: 63 RRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVL 102
Score = 39.6 bits (93), Expect = 6e-05
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 9/99 (9%)
Query: 1 MAHHFREQD-IDEFRECFFLFARNGTIK-TLDELSVIMRSLGMSP-TIAELKKYLAE--- 54
MA ++ + E + F L A T + L LG+ + + + + E
Sbjct: 29 MAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDL 88
Query: 55 -KGGKLSFPDFLKVMHTHSK--AEDIPKEVVDAFKAADT 90
G L+ +F +M S ED + A
Sbjct: 89 DGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQELC 127
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 64.7 bits (158), Expect = 4e-14
Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 20/138 (14%)
Query: 13 FRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYL---------AEKGGKLSFP 62
F A ++G + +EL + G++ T + + GK+ F
Sbjct: 2 VYTYFSAVAGQDGEV-DAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Query: 63 DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFR 122
F ++ + F D SGTV L+ + G LS + + I +
Sbjct: 61 AFKELWAA-------LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVK 113
Query: 123 EANVTMNSKVRYEDFVKI 140
+ N ++ ++D+V
Sbjct: 114 RYS--KNGRIFFDDYVAC 129
Score = 38.9 bits (91), Expect = 1e-04
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 10 IDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPDFL 65
++ ++E F ++ GT++ EL + +G + L + K G++ F D++
Sbjct: 69 LNAWKENFMTVDQDGSGTVEH-HELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYV 127
Query: 66 KVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
+ + D F+ D + G+
Sbjct: 128 ACCVKL-------RALTDFFRKRDHLQQGSA 151
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 62.5 bits (153), Expect = 5e-14
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
MA E++I +E F + + GTI T DEL ++ +G +E+K +
Sbjct: 13 MAERLSEEEIGGLKELFKMIDTDNSGTI-TFDELKDGLKRVGSELMESEIKDLMDAADID 71
Query: 55 KGGKLSFPDFLKVM 68
K G + + +F+
Sbjct: 72 KSGTIDYGEFIAAT 85
Score = 49.4 bits (119), Expect = 4e-09
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE 116
G + D K M E+I + + FK DT SGT+ LK L G L E
Sbjct: 4 GHIDDDD--KHMAERLSEEEI-GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE 60
Query: 117 VDQIFREANVTMNSKVRYEDFVKI 140
+ + A++ + + Y +F+
Sbjct: 61 IKDLMDAADIDKSGTIDYGEFIAA 84
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 64.3 bits (157), Expect = 5e-14
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 20/141 (14%)
Query: 10 IDEFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE---------KGGKL 59
+D F A ++G I DEL + G++ G +
Sbjct: 1 MDPLYGYFASVAGQDGQI-DADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 59
Query: 60 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQ 119
F +F ++ F + D+ +SGTV + L+ L G L+ + V+
Sbjct: 60 GFNEFKELWAV-------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNS 112
Query: 120 IFREANVTMNSKVRYEDFVKI 140
I + + + K+ ++D++
Sbjct: 113 IAKR--YSTSGKITFDDYIAC 131
Score = 38.5 bits (90), Expect = 2e-04
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 8 QDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE--KGGKLSFPD 63
++ +R+ F F + GT+ EL + ++G + GK++F D
Sbjct: 69 AVLNGWRQHFISFDSDRSGTVDP-QELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDD 127
Query: 64 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
++ + + D+F+ D+ + G V
Sbjct: 128 YIACCVK-------LRALTDSFRRRDSAQQGMV 153
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 62.3 bits (152), Expect = 8e-14
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 58 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 117
S + L + K D +E+ +AF+ D +G + A L+HV+ N GE L+ +EV
Sbjct: 9 HGSSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEV 67
Query: 118 DQIFREANVTMNSKVRYEDFVKI 140
D++ REA++ + +V YE+FV++
Sbjct: 68 DEMIREADIDGDGQVNYEEFVQM 90
Score = 47.7 bits (114), Expect = 2e-08
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 1 MAHHFREQD-IDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
++ D +E RE F + + NG I + EL +M +LG T E+ + + E
Sbjct: 18 FQSLMKDTDSEEEIREAFRVEDKDGNGYI-SAAELRHVMTNLGEKLTDEEVDEMIREADI 76
Query: 55 -KGGKLSFPDFLKVM 68
G++++ +F+++M
Sbjct: 77 DGDGQVNYEEFVQMM 91
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 63.3 bits (154), Expect = 8e-14
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGG 57
+ + F+E + F N G I L L +M LG+ T E+KK ++E
Sbjct: 43 ENLPEKLTAFKEKYMEFDLNNEGEI-DLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSD 101
Query: 58 KLSFPDFLKVMHTHSKAEDIPK--EVVDAFKAADTTKSGTVPAK 99
+S+ DF+ +M K + K + + + K P +
Sbjct: 102 TISYRDFVNMM--LGKRSAVLKLVMMFEGKANESSPKPVGPPPE 143
Score = 41.4 bits (97), Expect = 1e-05
Identities = 11/66 (16%), Positives = 25/66 (37%)
Query: 75 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 134
+ + + D G + LK ++ G + E+ ++ E ++ + Y
Sbjct: 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISY 105
Query: 135 EDFVKI 140
DFV +
Sbjct: 106 RDFVNM 111
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 62.1 bits (151), Expect = 3e-13
Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 30/157 (19%)
Query: 11 DEFRECFFLFARN--GTIKTLDELSVIMRSLG---------------MSPTIAELKKYLA 53
F F ++ G I + S +++ A +
Sbjct: 4 RRIAARFTTFDQDGNGHI-DRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG 62
Query: 54 E----KGGKLSFPDFLKVMHTHSK------AEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103
+++ +F+ + AE + A ADT G V
Sbjct: 63 IADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTAR 122
Query: 104 VLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
L + G+ Q + + KV + V
Sbjct: 123 ALTAF--GVPEDLARQAAAALDTDGDGKVGETEIVPA 157
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 62.1 bits (151), Expect = 5e-13
Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 31/161 (19%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSV----IMRSLGMSPTIAELKKYLAEKG---- 56
D ++ F + + G + + I + G AE++ G
Sbjct: 3 AIASDRLKKRFDRWDFDGNGAL-ERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 57 -----------GKLSFPDFLKVMHTHSKAED-------IPKEVVDAFKAADTTKSGTVPA 98
G L+ F++V + + V D G + A
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINA 121
Query: 99 KYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
L G+S E + F + + N ++ ++ +
Sbjct: 122 DEFAAWLTAL--GMSKAEAAEAFNQVDTNGNGELSLDELLT 160
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 61.8 bits (150), Expect = 1e-12
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELS-VIMRSLGMSPTIAELKKYL----- 52
+ + E F F +N G + DE+ + L + + ++
Sbjct: 38 IPREKTAEAKQRRIELFKKFDKNETGKL-CYDEVYSGCLEVLKLDEFTSRVRDITKRAFD 96
Query: 53 --------AEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHV 104
E G F +FL+ D E+ F D + + V + K
Sbjct: 97 KSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDF-FELTVMFDEIDASGNMLVDEEEFKRA 155
Query: 105 LVNWG-EGLSSKEVDQIFREANVTMNSKVRYEDFVKIACA 143
+ G ++ +F+E + V +++F A A
Sbjct: 156 VPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA 195
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 59.5 bits (145), Expect = 1e-12
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 46 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103
++KK L G + F ++ + + + +V FKA D SG + + LK
Sbjct: 10 DDIKKALDAVKAEGSFNHKKFFALVGLKAMSAN---DVKKVFKAIDADASGFIEEEELKF 66
Query: 104 VLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
VL + G L+ E + A+ + K+ ++F +
Sbjct: 67 VLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETL 106
Score = 34.9 bits (81), Expect = 0.002
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 4 HFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSL---GMSPTIAELKKYLAE---- 54
+ ++ ++ F +G I +EL +++S G T AE K +L
Sbjct: 35 GLKAMSANDVKKVFKAIDADASGFI-EEEELKFVLKSFAADGRDLTDAETKAFLKAADKD 93
Query: 55 KGGKLSFPDFLKVM 68
GK+ +F ++
Sbjct: 94 GDGKIGIDEFETLV 107
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 60.9 bits (148), Expect = 1e-12
Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 22/146 (15%)
Query: 8 QDIDEFRECFFLFA-RNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE------------ 54
+++ +FR F A + + + EL I+ + + + +
Sbjct: 1 EEVRQFRRLFAQLAGDDMEV-SATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS 114
GKL F +F + + K+ +K D +SGT+ + L G L+
Sbjct: 60 TTGKLGFEEFKYLWNN-------IKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNE 112
Query: 115 KEVDQIFREANVTMNSKVRYEDFVKI 140
I R + +++F+
Sbjct: 113 HLYSMIIR-RYSDEGGNMDFDNFISC 137
Score = 38.9 bits (91), Expect = 1e-04
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 10 IDEFRECFFLFARN--GTIKTLDELSVIMRSLGM--SPTIAEL--KKYLAEKGGKLSFPD 63
I +++ + F + GTI + EL + G + + + ++Y +++GG + F +
Sbjct: 76 IKKWQAIYKQFDVDRSGTIGS-SELPGAFEAAGFHLNEHLYSMIIRRY-SDEGGNMDFDN 133
Query: 64 FLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
F+ + + AFK+ D +G +
Sbjct: 134 FISCLVRL-------DAMFRAFKSLDKDGTGQI 159
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 60.9 bits (148), Expect = 2e-12
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 25/160 (15%)
Query: 4 HFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAEL-KKYLAEKGGKLS 60
F I F + GT+ + ++ I L ++P + + +E +++
Sbjct: 22 GFSHSQITRLYSRFTSLDKGENGTL-SREDFQRIP-ELAINPLGDRIINAFFSEGEDQVN 79
Query: 61 FPDFLKVMHTHSKAEDIPKEVVD---------------AFKAADTTKSGTVPAKYLKHVL 105
F F++ + ED K AF+ D K + L VL
Sbjct: 80 FRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVL 139
Query: 106 V-NWGEGLSSKE----VDQIFREANVTMNSKVRYEDFVKI 140
G +S ++ D+ +EA+ +S + + +FVK+
Sbjct: 140 RMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKV 179
Score = 27.4 bits (61), Expect = 1.4
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 6 REQDIDEFRECFFLFA--RNGTIKTLDELSVIMRSL-GMSPTIAELKKYLAE-------- 54
++ F L+ ++ I + DEL ++R + G++ + +L
Sbjct: 108 LNSRSNKLHFAFRLYDLDKDDKI-SRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQD 166
Query: 55 KGGKLSFPDFLKVM 68
+SF +F+KV+
Sbjct: 167 GDSAISFTEFVKVL 180
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 59.5 bits (144), Expect = 3e-12
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
++ F+ + F N G I + L ++ LG+ T ELK+ + E
Sbjct: 38 SNDEDLPSKLEAFKVKYMEFDLNGNGDI-DIMSLKRMLEKLGVPKTHLELKRLIREVSSG 96
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 102
S+ DFL++M A + + +G K +
Sbjct: 97 SEETFSYSDFLRMMLGKRSAILRMILMYEEKNKEHKRPTGPPAKKAIS 144
Score = 43.7 bits (103), Expect = 2e-06
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 37 RSLGMSPTIAELKKYLAEKG-GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 95
++ G+ A+ ++ L L P + + + D +G
Sbjct: 11 KAFGLLK--AQQEERLEGINKQFLDDPKYSNDEDL----PSKLEAFKVKYMEFDLNGNGD 64
Query: 96 VPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ LK +L G + E+ ++ RE + Y DF+++
Sbjct: 65 IDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRM 109
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 60.2 bits (146), Expect = 4e-12
Identities = 20/149 (13%), Positives = 55/149 (36%), Gaps = 13/149 (8%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
Q+ + F + +G TL E ++ G++ + + K G
Sbjct: 15 AVPTQETHVWYRTFMMEYPSGLQ-TLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGF 73
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE-- 116
+ F +F+ ++ + + K + FK D +G++ L + + +
Sbjct: 74 VDFLEFIAAVNLIMQEKMEQK-LKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLS 132
Query: 117 ----VDQIFREANVTMNSKVRYEDFVKIA 141
++ +F + ++ + ++ E+F+
Sbjct: 133 PEEFINLVFHKIDINNDGELTLEEFINGM 161
Score = 26.3 bits (58), Expect = 3.5
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 1 MAHHFREQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAE------LKKYL 52
+ +E+ + + F L+ NG+I +EL + ++ +
Sbjct: 83 VNLIMQEKMEQKLKWYFKLYDADGNGSI-DKNELLDMFMAVQALNGQQTLSPEEFINLVF 141
Query: 53 AE----KGGKLSFPDFLKVMHTHSK 73
+ G+L+ +F+ M
Sbjct: 142 HKIDINNDGELTLEEFINGMAKDQD 166
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 59.9 bits (145), Expect = 4e-12
Identities = 22/169 (13%), Positives = 55/169 (32%), Gaps = 33/169 (19%)
Query: 2 AHHFREQDIDEFRECFFLFA---RNGTIKTLDELSVIMRSLG-------MSPTIAELKKY 51
AH + ++ F F +G I D+ + ++ + E +
Sbjct: 3 AHQLSDFQRNKILRVFNTFYDCNHDGVI-EWDDFELAIKKICNLHSWPTDGKKHNEARAT 61
Query: 52 LAE------------KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA--------FKAADTT 91
L + +++ ++LK+ K+ + + + + F DT+
Sbjct: 62 LKLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTS 121
Query: 92 KSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ V +++ G+ + D F + + V E F ++
Sbjct: 122 GDNIIDKHEYSTVYMSY--GIPKSDCDAAFDTLSDGGKTMVTREIFARL 168
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 59.0 bits (143), Expect = 6e-12
Identities = 23/154 (14%), Positives = 42/154 (27%), Gaps = 24/154 (15%)
Query: 7 EQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTI-AELKKYLAE--------- 54
+ + + + F + G I T + + + AE K L +
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAI-TRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF 60
Query: 55 -----KGGKLSFPDFLKVMHTHSKAEDIPKEVVD----AFKAADTTKSGTVPAKYLKHVL 105
G + F+ M K + V F+A DT + +
Sbjct: 61 LTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF 120
Query: 106 VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
GL F + + + E+FV
Sbjct: 121 GML--GLDKTMAPASFDAIDTNNDGLLSLEEFVI 152
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 58.2 bits (141), Expect = 2e-11
Identities = 22/150 (14%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
+ ++ + F +G + TL E +SP+ + + + K G
Sbjct: 10 ELSATECHQWYKKFMTECPSGQL-TLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGY 68
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN------WGEGL 112
+ F +++ + K + K + FK D +G + L +++ E +
Sbjct: 69 IDFMEYVAALSLVLKGKVDQK-LRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAM 127
Query: 113 SSKE-VDQIFREANVTMNSKVRYEDFVKIA 141
+++E + +F + ++ + ++ E+F++
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGV 157
Score = 27.0 bits (60), Expect = 1.9
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 1 MAHHFREQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAE----------- 47
++ + + + R F L+ NG I EL I++++ E
Sbjct: 78 LSLVLKGKVDQKLRWYFKLYDVDGNGCI-DRGELLNIIKAIRAINRCNEAMTAEEFTNMV 136
Query: 48 LKKYLAEKGGKLSFPDFLKVMHTH 71
K G+LS +F++ +
Sbjct: 137 FDKIDINGDGELSLEEFMEGVQKD 160
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 55.4 bits (134), Expect = 5e-11
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 38 SLGMSPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 95
S+ + ++KK + F +++ K+ D +V F D KSG
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKSAD---DVKKVFHILDKDKSGF 57
Query: 96 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ L +L LS+KE + + + K+ E+F +
Sbjct: 58 IEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTL 105
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 6 REQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP---TIAELKKYLAE----KG 56
+++ D+ ++ F + + +G I DEL I++ + E K +A
Sbjct: 36 KKKSADDVKKVFHILDKDKSGFI-EEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGD 94
Query: 57 GKLSFPDFLKVMH 69
GK+ +F ++
Sbjct: 95 GKIGVEEFSTLVA 107
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 54.4 bits (131), Expect = 1e-10
Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 58 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEV 117
+ D L +H + + F+ DT K+ T+ + + + + L+ ++
Sbjct: 5 ATADRDILARLHKAVTSHY--HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQF 62
Query: 118 DQIFREANVTMNSKVRYEDFVK 139
D+++ E V +++Y DF+
Sbjct: 63 DRLWNEMPVNAKGRLKYPDFLS 84
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 54.2 bits (131), Expect = 1e-10
Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 38 SLGMSPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 95
+ A++ L ++ F + +K+ D ++ AF D KSG
Sbjct: 2 AFSGILADADVAAALKACEAADSFNYKAFFAKVGLTAKSAD---DIKKAFFVIDQDKSGF 58
Query: 96 VPAKYLKHVLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ LK L L+ E + + + + +++ +
Sbjct: 59 IEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 53.7 bits (130), Expect = 2e-10
Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 46 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103
++ K ++ G + F ++ K + +V + F+ D +SG + + LK
Sbjct: 9 DDINKAISAFKDPGTFDYKRFFHLVGLKGKTDA---QVKEVFEILDKDQSGFIEEEELKG 65
Query: 104 VLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
VL G L+ E + + + K+ ++F K+
Sbjct: 66 VLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKM 105
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 53.3 bits (129), Expect = 2e-10
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 46 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103
A++ LA +F + SK+ D +V AF D KSG + LK
Sbjct: 9 ADVAAALAACSAADSFKHKEFFAKVGLASKSLD---DVKKAFYVIDQDKSGFIEEDELKL 65
Query: 104 VLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
L N L+ E + + + + ++F +
Sbjct: 66 FLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAM 105
Score = 34.8 bits (81), Expect = 0.002
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 4 HFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP---TIAELKKYLAE---- 54
+ +D+ ++ F++ + +G I DEL + +++ S T AE K +LA+
Sbjct: 34 GLASKSLDDVKKAFYVIDQDKSGFI-EEDELKLFLQNFSPSARALTDAETKAFLADGDKD 92
Query: 55 KGGKLSFPDFLKVMH 69
G + +F ++
Sbjct: 93 GDGMIGVDEFAAMIK 107
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 54.9 bits (132), Expect = 4e-10
Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 19/157 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSV--------IMRSLGMSPTIAELKKYLAEK 55
+Q+I F L + L +P + + +
Sbjct: 44 FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTS 103
Query: 56 G--GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN-----W 108
LSF DFL ++ S + AF+ D GT+ + L ++
Sbjct: 104 PAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGE 163
Query: 109 GEGLSSKE----VDQIFREANVTMNSKVRYEDFVKIA 141
LS+ E +D I E+++ + + +F +
Sbjct: 164 DTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVI 200
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 54.2 bits (130), Expect = 5e-10
Identities = 17/164 (10%), Positives = 46/164 (28%), Gaps = 33/164 (20%)
Query: 7 EQDIDEFRECFFLFA---RNGTIKTLDELSVIMRSLGM-------SPTIAELKKYLAE-- 54
+ + + F F +G+I ++ +M ++ L +
Sbjct: 4 DFQKQKIKFTFDFFLDMNHDGSI-QDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEW 62
Query: 55 ----------KGGKLSFPDFLKVMHTHSKAEDIPKEVVDA--------FKAADTTKSGTV 96
K +S+ ++L + ++ FK D + G V
Sbjct: 63 RDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIV 122
Query: 97 PAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ ++ N+ L +V ++ + ++
Sbjct: 123 DLEEFQNYCKNF--QLQCADVPAVYNVITDGGKVTFDLNRYKEL 164
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 51.9 bits (125), Expect = 9e-10
Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 38 SLGMSPTIAELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGT 95
SL + +++ L + S F ++ K+ ++ + F+ D +SG
Sbjct: 1 SLTDILSPSDIAAALRDCQAPDSFSPKKFFQISGMSKKSSS---QLKEIFRILDNDQSGF 57
Query: 96 VPAKYLKHVLVNW---GEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ LK+ L + L++ E A+ + K+ E+F ++
Sbjct: 58 IEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEM 105
Score = 40.7 bits (96), Expect = 1e-05
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 7 EQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP---TIAELKKYLAE----KGG 57
++ + +E F + +G I DEL ++ T +E K +LA G
Sbjct: 37 KKSSSQLKEIFRILDNDQSGFI-EEDELKYFLQRFESGARVLTASETKTFLAAADHDGDG 95
Query: 58 KLSFPDFLKVMHT 70
K+ +F +++ +
Sbjct: 96 KIGAEEFQEMVQS 108
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 51.4 bits (124), Expect = 1e-09
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 75 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRY 134
D +E+ +AFK D ++G + A L+HV++N GE L+ +EV+Q+ +EA++ + +V Y
Sbjct: 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNY 64
Query: 135 EDFVKI 140
E+FVK+
Sbjct: 65 EEFVKM 70
Score = 49.5 bits (119), Expect = 5e-09
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 4 HFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGG 57
H +E +E F +F + NG I + EL +M +LG T E+++ + E G
Sbjct: 2 HMDTDAEEELKEAFKVFDKDQNGYI-SASELRHVMINLGEKLTDEEVEQMIKEADLDGDG 60
Query: 58 KLSFPDFLKVMHTHSK--AEDIPKEVVDAFKA 87
++++ +F+K+M T + + F +
Sbjct: 61 QVNYEEFVKMMMTVRGGGGGNGWSRLRRKFSS 92
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 51.1 bits (123), Expect = 2e-09
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 46 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103
++ L E F + + +V D F+ D +SG + LK+
Sbjct: 9 EDIAAALQECQDPDTFEPQKFFQTSGLSKMSAS---QVKDIFRFIDNDQSGYLDGDELKY 65
Query: 104 VLVN---WGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
L L+ E + A+ + K+ ++F ++
Sbjct: 66 FLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
Score = 41.1 bits (97), Expect = 1e-05
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 2 AHHFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP---TIAELKKYLAE-- 54
+ + ++ F +G + DEL ++ T +E K +
Sbjct: 32 TSGLSKMSASQVKDIFRFIDNDQSGYL-DGDELKYFLQKFQSDARELTESETKSLMDAAD 90
Query: 55 --KGGKLSFPDFLKVMHT 70
GK+ +F +++H+
Sbjct: 91 NDGDGKIGADEFQEMVHS 108
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 50.3 bits (121), Expect = 2e-09
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 11 DEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDF 64
D+ F F N G I +L EL+ +R+LG + E+++ +AE G + F +F
Sbjct: 3 DDMERIFKRFDTNGDGKI-SLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEF 60
Query: 65 LKVMHTHSKAEDIPKEVVDAF 85
+ + + K+V F
Sbjct: 61 ISFC---NANPGLMKDVAKVF 78
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
++ FK DT G + L L G S+ EV ++ E + + + + +F+
Sbjct: 4 DMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEFIS 62
Query: 140 I 140
Sbjct: 63 F 63
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 50.7 bits (122), Expect = 2e-09
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 46 AELKKYLAE--KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKH 103
+++ L+ ++ F + SK D ++ F D KSG + + L+
Sbjct: 10 KDIESALSSCQAADSFNYKSFFSTVGLSSKTPD---QIKKVFGILDQDKSGFIEEEELQL 66
Query: 104 VLVNWGEG---LSSKEVDQIFREANVTMNSKVRYEDFVKI 140
L N+ L+S E + + K+ E+F +
Sbjct: 67 FLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSL 106
Score = 36.5 bits (85), Expect = 5e-04
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 4 HFREQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP---TIAELKKYLAE---- 54
+ D+ ++ F + + +G I +EL + +++ S T AE K +LA
Sbjct: 35 GLSSKTPDQIKKVFGILDQDKSGFI-EEEELQLFLKNFSSSARVLTSAETKAFLAAGDTD 93
Query: 55 KGGKLSFPDFLKVM 68
GK+ +F ++
Sbjct: 94 GDGKIGVEEFQSLV 107
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 49.8 bits (120), Expect = 2e-09
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 74 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVR 133
A +++ AF+A D G + L+ + G+ L +E+D + REA+V + +V
Sbjct: 1 ARAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN 60
Query: 134 YEDFVKI 140
YE+F ++
Sbjct: 61 YEEFARM 67
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 7 EQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
+++ + F F + +G I T+DEL M LG EL + E + G+++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHI-TVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVN 60
Query: 61 FPDFLKVM 68
+ +F +++
Sbjct: 61 YEEFARML 68
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 51.4 bits (123), Expect = 5e-09
Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 3 HHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGG 57
F E +I E+ + F +G + +++E I + ++ +++ A G
Sbjct: 20 TDFTEHEIQEWYKGFLRDCPSGHL-SMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDG 78
Query: 58 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS--- 114
+ F +F+ + S+ + K + AF D +G + + ++ + +SS
Sbjct: 79 TIDFREFIIALSVTSRGKLEQK-LKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMK 137
Query: 115 ---------KEVDQIFREANVTMNSKVRYEDFVKIA 141
K ++IFR+ + + K+ E+F++ A
Sbjct: 138 MPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA 173
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 50.6 bits (121), Expect = 1e-08
Identities = 22/159 (13%), Positives = 58/159 (36%), Gaps = 26/159 (16%)
Query: 7 EQDIDEFRECFFLFAR---NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKL 59
D + +E + F +GT+ + E + ++ +
Sbjct: 18 AADAAQLQEWYKKFLEECPSGTL-FMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTI 76
Query: 60 SFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVN------------ 107
F +++ ++ + + ++ FK D ++G + + L ++ +
Sbjct: 77 DFLEYVAALNLVLRG-TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEV 135
Query: 108 ----WGEGLSSKE-VDQIFREANVTMNSKVRYEDFVKIA 141
G+ L+ +E VD+IF + + ++ +FV+ A
Sbjct: 136 EAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 50.5 bits (121), Expect = 1e-08
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 19/157 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLD--------ELSVIMRSLGMSPTIAELKKYLAEK 55
+Q+I F E + + L +P + + +
Sbjct: 13 FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTS 72
Query: 56 G--GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL-----VNW 108
LSF DFL ++ S + AF+ D GT+ + L ++
Sbjct: 73 PAKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGE 132
Query: 109 GEGLSSKE----VDQIFREANVTMNSKVRYEDFVKIA 141
LS+ E +D I E+++ + + +F +
Sbjct: 133 DTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVI 169
Score = 25.5 bits (56), Expect = 6.6
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 19/82 (23%)
Query: 11 DEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG------------ 56
+ F +F +GT+ ++LS ++ L L ++
Sbjct: 98 IKSHYAFRIFDFDDDGTL-NREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
Query: 57 -GKLSFPDFLKVMHTHSKAEDI 77
G ++ +F V+ S++ D
Sbjct: 157 DGTINLSEFQHVI---SRSPDF 175
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 47.9 bits (115), Expect = 1e-08
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 12 EFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFL 65
+ F F +N G + +LDE + + T ++ K+ E G+L+ +F
Sbjct: 2 SAKRVFEKFDKNKDGKL-SLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFT 60
Query: 66 KVM 68
+
Sbjct: 61 SCI 63
Score = 45.2 bits (108), Expect = 1e-07
Identities = 10/61 (16%), Positives = 25/61 (40%)
Query: 80 EVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
F+ D K G + + V + + + +++ + F E +V N ++ ++F
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61
Query: 140 I 140
Sbjct: 62 C 62
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 43.5 bits (103), Expect = 9e-07
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 1 MAHHFREQDIDEFRECFFLFARN--GTIKTLDELSVIMRSLGMSPTIAELKKYLAE---- 54
+++ R F N G + +E + L + P A+ +
Sbjct: 17 QGADGDGEELARLRSVFAACDANRSGRL-EREEFRALCTELRVRP--ADAEAVFQRLDAD 73
Query: 55 KGGKLSFPDFLKVM 68
+ G ++F +F +
Sbjct: 74 RDGAITFQEFARGF 87
Score = 38.1 bits (89), Expect = 1e-04
Identities = 9/74 (12%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREA 124
L E++ + F A D +SG + + + + + + + +F+
Sbjct: 14 LYFQGADGDGEEL-ARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRL 70
Query: 125 NVTMNSKVRYEDFV 138
+ + + +++F
Sbjct: 71 DADRDGAITFQEFA 84
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 42.2 bits (100), Expect = 2e-06
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 6 REQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP-TIAELKKYLAE----KGGK 58
R+ D +E F +F +G I DE IM+ +G P T AE+++ + E G
Sbjct: 3 RQDDEEEILRAFKVFDANGDGVI-DFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGV 61
Query: 59 LSFPDFLKVM 68
+ P+F+ ++
Sbjct: 62 IDIPEFMDLI 71
Score = 42.2 bits (100), Expect = 2e-06
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 75 EDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE-GLSSKEVDQIFREANVTMNSKVR 133
+D +E++ AFK D G + K ++ GE L+ EV++ +EA+ N +
Sbjct: 4 QDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVID 63
Query: 134 YEDFVKI 140
+F+ +
Sbjct: 64 IPEFMDL 70
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 44.1 bits (104), Expect = 2e-06
Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 19/155 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
+F ++I ++ + F +G + ++ I + + + +L + G
Sbjct: 21 YFDRREIQQWHKGFLRDCPSGQL-AREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGF 79
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL------------V 106
+ F +F+ V+ T S+ K + AF+ D G + + ++ +
Sbjct: 80 IHFEEFITVLSTTSRGTLEEK-LSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTL 138
Query: 107 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141
N E V +IF+ + + + ++F + +
Sbjct: 139 NEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGS 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 4e-06
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 39/171 (22%)
Query: 5 FREQDIDEFRECF---FLFARNGTI--KTL---------DELSVIMRSLGMSPTIAELKK 50
+ E+R+ F +F + I L ++ V++ L K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL--------HKY 414
Query: 51 YLAEKGGK---LSFPDFLKVMHTHSKAEDIP---KEVVDAFKAADTTKSGTVPAK----- 99
L EK K +S P + K E+ + +VD + T S +
Sbjct: 415 SLVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 100 ---YLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIACAPVPD 147
++ H L N +F + + K+R++ A + +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILN 522
Score = 39.5 bits (91), Expect = 2e-04
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 29/115 (25%)
Query: 1 MAHHFRE----QDIDEFRECF--FLFARNGTIKTLDELSVIMRSLGMSPTIAELKKY--- 51
+ HH + + + FR F F F K + + S + T+ +LK Y
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 52 LAEKGGKL-----SFPDFLKVMHTH---SKAEDI-------PKEVV--DAFKAAD 89
+ + K + DFL + + SK D+ E + +A K
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 33.3 bits (75), Expect = 0.025
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 30/100 (30%)
Query: 63 DF-LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIF 121
DF K DI DAF K V K +L S +E+D I
Sbjct: 8 DFETGEHQYQYK--DILSVFEDAFVDNFDCKD--VQ-DMPKSIL-------SKEEIDHII 55
Query: 122 REANVTMNSKVR-------------YEDFVKIACAPVPDY 148
+ S + FV+ +Y
Sbjct: 56 MSKDAV--SGTLRLFWTLLSKQEEMVQKFVEEVLR--INY 91
Score = 29.8 bits (66), Expect = 0.37
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 40/152 (26%)
Query: 8 QDIDEFR-ECFFLF-ARNGTI------KTLDELSVIMRSLGMSPTIAELKKYLAEKGGKL 59
+ + F C L R + T +S+ S+ ++P E+K L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLL------ 308
Query: 60 SFPDFLKVMHTHSKAEDIPKEVVD----AFK-AADTTKSGTVPAKYLKHVLVNWGEGLSS 114
K + + +D+P+EV+ A++ + G KHV +
Sbjct: 309 ------KYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-----KL 355
Query: 115 KEVDQIFREANVTMNSKVRYEDF------VKI 140
+ + + ++ I
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 43.9 bits (104), Expect = 5e-06
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 19/155 (12%)
Query: 1 MAHHFR-EQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
MA +++ E + F +G + EL L +
Sbjct: 335 MASKLTSQEETKELTDIFRHIDKNGDGQL-DRQELIDGYSKLSGEEVAVFDLPQIESEVD 393
Query: 55 ---------KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL 105
+ G + + +F+ V K + AF+ D +G + L V
Sbjct: 394 AILGAADFDRNGYIDYSEFVTVAMDRKSLLSKDK-LESAFQKFDQDGNGKISVDELASVF 452
Query: 106 VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ L SK ++ + + V +E+F K+
Sbjct: 453 G--LDHLESKTWKEMISGIDSNNDGDVDFEEFCKM 485
Score = 37.8 bits (88), Expect = 7e-04
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL--------VNWGEGLSSKE 116
L M + +++ KE+ D F+ D G + + L + E
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391
Query: 117 VDQIFREANVTMNSKVRYEDFV 138
VD I A+ N + Y +FV
Sbjct: 392 VDAILGAADFDRNGYIDYSEFV 413
Score = 30.1 bits (68), Expect = 0.23
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 14 RECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKV 67
F F + NG I ++DEL+ + + K+ ++ G + F +F K+
Sbjct: 429 ESAFQKFDQDGNGKI-SVDELASVFGLDHLES--KTWKEMISGIDSNNDGDVDFEEFCKM 485
Query: 68 MHTHS 72
+
Sbjct: 486 IQKLC 490
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 41.5 bits (98), Expect = 5e-06
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 13/74 (17%)
Query: 7 EQDIDEFRECFFLFAR--NGTIKTLDELSVIMRSLGMSP------TIAELKKYLAE---- 54
+ E F +G + T EL M +L K +
Sbjct: 3 CKVKAELEAAFKKLDANGDGYV-TALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN 61
Query: 55 KGGKLSFPDFLKVM 68
GK+S +FL
Sbjct: 62 SDGKISKEEFLNAN 75
Score = 38.8 bits (91), Expect = 5e-05
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 74 AEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSK------EVDQIFREANVT 127
A + E+ AFK D G V A L+ +V + ++ + A+
Sbjct: 2 ACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN 61
Query: 128 MNSKVRYEDFVKI 140
+ K+ E+F+
Sbjct: 62 SDGKISKEEFLNA 74
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 42.3 bits (99), Expect = 1e-05
Identities = 20/157 (12%), Positives = 58/157 (36%), Gaps = 21/157 (13%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
F E+++ + + F G I T + I +++ + G
Sbjct: 29 KFSEEELCSWYQSFLKDCPTGRI-TQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGT 87
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE-- 116
L F +++ +H + + K + AF D +GT+ + +++ + ++ ++
Sbjct: 88 LDFKEYVIALHMTTAGKTNQK-LEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVK 146
Query: 117 ------------VDQIFREANVTMNSKVRYEDFVKIA 141
++I++ + K+ ++F++
Sbjct: 147 LLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGT 183
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 42.1 bits (99), Expect = 2e-05
Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 20/155 (12%)
Query: 4 HFREQDIDEFRECFFLFA----RNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AE 54
F +I+ E F + +G I +E + + + + +
Sbjct: 41 VFSVSEIEALYELFKKISSAVIDDGLI-NKEEFQLALFKTNKKES--LFADRVFDLFDTK 97
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLV-------- 106
G L F +F + + I ++ +F+ D + G + + +K ++V
Sbjct: 98 HNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGM 157
Query: 107 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141
N + + +D+ F EA+ + K+ E++ +
Sbjct: 158 NLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 41.7 bits (98), Expect = 2e-05
Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 20/155 (12%)
Query: 4 HFREQDIDEFRECFFLFARN----GTIKTLDELSVIMRSLGMSPTIAELKKYL-----AE 54
F ++++ E F + + G I +E + + + +
Sbjct: 30 PFTVEEVEALYELFKKLSSSIIDDGLI-HKEEFQLALFRNRNRRN--LFADRIFDVFDVK 86
Query: 55 KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL--------V 106
+ G + F +F++ + + + ++V AFK D ++G + + LK ++ +
Sbjct: 87 RNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESEL 146
Query: 107 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKIA 141
E + VD+ F +A+ + K+ +++
Sbjct: 147 VLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFV 181
Score = 25.5 bits (56), Expect = 6.8
Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 19/92 (20%)
Query: 1 MAHHFREQDIDE-FRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
+ + E + F L+ + G I +EL ++ +L + + +
Sbjct: 100 LGVFHPSAPVHEKVKFAFKLYDLRQTGFI-EREELKEMVVALLHESELVLSEDMIEVMVD 158
Query: 55 ---------KGGKLSFPDFLKVMHTHSKAEDI 77
GK+ ++ + S +
Sbjct: 159 KAFVQADRKNDGKIDIDEWKDFV---SLNPSL 187
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 39.5 bits (93), Expect = 2e-05
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 11 DEFRECFFLFAR----NGTIKTLDELSVIMRSLG--MSPTIAELKKYLAE----KGGKLS 60
+E + F +FA I + +EL ++M++LG + ++ L + + E G++S
Sbjct: 5 EEIKGAFEVFAAKEGDPNQI-SKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63
Query: 61 FPDFLKVM 68
F +FL +M
Sbjct: 64 FEEFLVMM 71
Score = 37.2 bits (87), Expect = 2e-04
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 78 PKEVVDAFKAADTT--KSGTVPAKYLKHVLVNWGEGL--SSKEVDQIFREANVTMNSKVR 133
P+E+ AF+ + + LK V+ G L +D++ E + + +V
Sbjct: 4 PEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVS 63
Query: 134 YEDFVKI 140
+E+F+ +
Sbjct: 64 FEEFLVM 70
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 41.6 bits (98), Expect = 3e-05
Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 19/155 (12%)
Query: 1 MAHHFREQD-IDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE--- 54
+ + E + F +G + EL L K + E
Sbjct: 344 IGSKLTTLEERKELTDIFKKLDKNGDGQL-DKKELIEGYNVLRNFKNELGELKNVEEEVD 402
Query: 55 ---------KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL 105
K G + + +F+ V + + AF DT KSG + + L ++
Sbjct: 403 NILKEVDFDKNGYIEYSEFISVCMDKQILFSEER-LRRAFNLFDTDKSGKITKEELANLF 461
Query: 106 VNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+S K + + EA+ ++ + +++FV +
Sbjct: 462 G--LTSISEKTWNDVLGEADQNKDNMIDFDEFVSM 494
Score = 37.0 bits (86), Expect = 0.001
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 65 LKVMHTH-SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGE--------GLSSK 115
+ + + + E+ KE+ D FK D G + K L +
Sbjct: 341 ILFIGSKLTTLEER-KELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEE 399
Query: 116 EVDQIFREANVTMNSKVRYEDFV 138
EVD I +E + N + Y +F+
Sbjct: 400 EVDNILKEVDFDKNGYIEYSEFI 422
Score = 30.4 bits (69), Expect = 0.18
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 14 RECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAE--LKKYLAEKGGKLSFPDFLKVMH 69
R F LF +G I T +EL+ + +S L + K + F +F+ +MH
Sbjct: 438 RRAFNLFDTDKSGKI-TKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMH 496
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 38.7 bits (91), Expect = 3e-05
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 83 DAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
FK D G V + +K + + + + IF+ + N ++ +F K
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Score = 27.9 bits (63), Expect = 0.34
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Query: 5 FREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
F+E D++ +G + + +E+ + L+ G++
Sbjct: 6 FKEIDVN----------GDGAV-SYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEID 54
Query: 61 FPDFLKVMHT 70
+F K +
Sbjct: 55 QNEFAKFYGS 64
Score = 27.1 bits (61), Expect = 0.68
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
G +S+ + + ++ + + FK+ D +G +
Sbjct: 15 GAVSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDADGNGEI 53
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 41.2 bits (97), Expect = 4e-05
Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 23/161 (14%)
Query: 1 MAHHFREQD-IDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAEKG- 56
MA D + E F +G + DEL + E
Sbjct: 320 MASKLTTLDETKQLTEIFRKLDTNNDGML-DRDELVRGYHEFMRLKGVDSNSLIQNEGST 378
Query: 57 -----------------GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAK 99
G + + +F+ + + + AFK D SG + K
Sbjct: 379 IEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRER-MERAFKMFDKDGSGKISTK 437
Query: 100 YLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
L + + +E++ I + + + +V + +FV++
Sbjct: 438 ELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEM 478
Score = 35.4 bits (82), Expect = 0.004
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 65 LKVMHTH-SKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL--------------VNWG 109
L M + + ++ K++ + F+ DT G + L +
Sbjct: 317 LLYMASKLTTLDET-KQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNE 375
Query: 110 EGLSSKEVDQIFREANVTMNSKVRYEDFV 138
++D + ++ + + Y +F+
Sbjct: 376 GSTIEDQIDSLMPLLDMDGSGSIEYSEFI 404
Score = 35.0 bits (81), Expect = 0.005
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 14 RECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLSFPDFLKV 67
F +F + +G I + EL + S + EL+ + + K G++ F +F+++
Sbjct: 420 ERAFKMFDKDGSGKI-STKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEM 478
Query: 68 MHTHSKAE 75
+ + E
Sbjct: 479 LQNFVRNE 486
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 40.8 bits (96), Expect = 6e-05
Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 22/158 (13%)
Query: 1 MAHHFR-EQDIDEFRECFFLF--ARNGTIKTLDEL-----------SVIMRSLGMSPTIA 46
M + + E F +G + EL L S
Sbjct: 324 MGSKLTSQDETKELTAIFHKMDKNGDGQL-DRAELIEGYKELMRMKGQDASMLDASAVEH 382
Query: 47 ELKKYLAE----KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLK 102
E+ + L K G + + +F+ V + + AF+ D+ SG + + L
Sbjct: 383 EVDQVLDAVDFDKNGYIEYSEFVTVAMDRKTLLSRER-LERAFRMFDSDNSGKISSTELA 441
Query: 103 HVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
+ + S+ + E + + +V +++F ++
Sbjct: 442 TIFG--VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQM 477
Score = 38.9 bits (91), Expect = 3e-04
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL-----------VNWGEGLS 113
L M + ++D KE+ F D G + L
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 114 SKEVDQIFREANVTMNSKVRYEDFV 138
EVDQ+ + N + Y +FV
Sbjct: 381 EHEVDQVLDAVDFDKNGYIEYSEFV 405
Score = 30.8 bits (70), Expect = 0.15
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 14 RECFFLFAR--NGTIKTLDELSVIMRSLGMSPTIAE--LKKYLAEKGGKLSFPDFLKVMH 69
F +F +G I + EL+ I + + L + G++ F +F +++
Sbjct: 421 ERAFRMFDSDNSGKI-SSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL 479
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 39.5 bits (92), Expect = 1e-04
Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 19/155 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
F ++++ F +G + + I +L + G
Sbjct: 60 KFTKKELQILYRGFKNECPSGVV-NEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGA 118
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL------VNWGEGL 112
+SF DF+K + + K + AF D K G + + + ++ +
Sbjct: 119 VSFEDFIKGLSILLRGTVQEK-LNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYP 177
Query: 113 SSKE------VDQIFREANVTMNSKVRYEDFVKIA 141
KE V+ F++ + + V ++F++
Sbjct: 178 VLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESC 212
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 39.5 bits (91), Expect = 2e-04
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 6 REQDIDEFRECFFLFARNGTIK-TLDELSVIMRSLGMSPTIAELKKYLAE----KGGKLS 60
++ ++EFR F F R T ++ + S+G + AE + ++ + G ++
Sbjct: 720 SQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVT 779
Query: 61 FPDFLKVMHTHSKAEDIPKEVVDAFKA 87
F F+ M + D +V+ +FK
Sbjct: 780 FQAFIDFMSRETADTDTADQVMASFKI 806
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 38.7 bits (90), Expect = 2e-04
Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 19/155 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
+F E+++ ++ + F +G + I + + ++ K G+
Sbjct: 21 YFTEKEVQQWYKGFIKDCPSGQL-DAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGR 79
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS---- 114
+ F +F++ + S+ K + AFK D G + + ++ + + +
Sbjct: 80 IEFSEFIQALSVTSRGTLDEK-LRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVEL 138
Query: 115 --------KEVDQIFREANVTMNSKVRYEDFVKIA 141
K VD+IF + + K+ ++F + +
Sbjct: 139 PEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGS 173
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 37.9 bits (88), Expect = 4e-04
Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
F ++++ ++ + FF +G + E I + + +Y+ A+K G
Sbjct: 21 RFDKKELQQWYKGFFKDCPSGHL-NKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY 79
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSS---- 114
+ F +F+ + S+ E K ++ AF+ D +G + + ++ + + S
Sbjct: 80 IDFKEFICALSVTSRGELNDK-LIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKL 138
Query: 115 --------KEVDQIFREANVTMNSKVRYEDFVKIA 141
K V++IF + + ++ E+F + +
Sbjct: 139 PEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGS 173
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 36.6 bits (84), Expect = 0.001
Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 HHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGG 57
F ++++ F G + D +I +L A+ G
Sbjct: 86 TKFTKKELQSLYRGFKNECPTGLV-DEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNG 144
Query: 58 KLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE- 116
+ F DF+ + + K + AF D K G + + + ++ + + +
Sbjct: 145 AIHFEDFVVGLSILLRGTVHEK-LKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTY 203
Query: 117 -----------VDQIFREANVTMNSKVRYEDFVKIA 141
V++ F++ + + V ++F++
Sbjct: 204 PILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETC 239
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 35.9 bits (83), Expect = 0.002
Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 19/153 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
+F ++++ F +G + + I + YL + G
Sbjct: 14 NFTKRELQVLYRGFKNEXPSGVV-NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 72
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHV------LVNWGEGL 112
+ F DF+ + + K + F D K G + + + + ++
Sbjct: 73 VKFEDFVTALSILLRGTVHEK-LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYP 131
Query: 113 SSKE------VDQIFREANVTMNSKVRYEDFVK 139
KE VD F++ + + V ++F++
Sbjct: 132 VLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLE 164
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 33.6 bits (77), Expect = 0.006
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 85 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
F++ S + K+ LS E+ I+ ++ + + +F
Sbjct: 28 FRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALTLPEFC 79
Score = 27.8 bits (62), Expect = 0.83
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 7 EQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA--EKGGKLSFP 62
E+ + + F + I + +S L+ + G L+ P
Sbjct: 18 EEQREYYVNQFRSLQPDPSSFI-SGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLP 76
Query: 63 DFLKVMH 69
+F H
Sbjct: 77 EFCAAFH 83
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 33.6 bits (77), Expect = 0.007
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 85 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
F + D T SG + + +L+ L ++ I+ +++ + K+ E+F+
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLTAEEFI 71
Score = 26.7 bits (59), Expect = 2.0
Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 7 EQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKK--YLA--EKGGKLS 60
+ ++R+ F +G + T + I+ + A+L L+ ++ GKL+
Sbjct: 10 QSSRLKYRQLFNSHDKTMSGHL-TGPQARTILMQSSLPQ--AQLASIWNLSDIDQDGKLT 66
Query: 61 FPDFLKVMH---THSKAEDIPKEV 81
+F+ MH + +P +
Sbjct: 67 AEEFILAMHLIDVAMSGQPLPPVL 90
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 34.4 bits (78), Expect = 0.010
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 29/109 (26%)
Query: 3 HHFRE--QDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGM--SPTIAEL--KKYLAE 54
F+ +I +++ + F R+GTI + +EL + G + I + ++Y ++
Sbjct: 794 EEFKYLWNNIKKWQGIYKRFETDRSGTIGS-NELPGAFEAAGFHLNQHIYSMIIRRY-SD 851
Query: 55 KGGKLSFPDF------LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVP 97
+ G + F +F L M AF++ D +G +
Sbjct: 852 ETGNMDFDNFISCLVRLDAMF-------------RAFRSLDKNGTGQIQ 887
Score = 33.2 bits (75), Expect = 0.027
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 26/157 (16%)
Query: 1 MAHHFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYLAE------ 54
E+ D F+ F A + ++ EL I+ + + E
Sbjct: 524 EKVLSEEEIDDNFKTLFSKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMV 583
Query: 55 ------KGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNW 108
GKL +F + + I F+ D KSG++ A ++ +
Sbjct: 584 NLMDRDGNGKLGLVEFNILWNRIRNYLTI-------FRKFDLDKSGSMSAYEMRMAIEAA 636
Query: 109 GEGLSSKEVDQI---FREANVTMNSKVRYEDFVKIAC 142
G L + I F + + ++ +++FV+
Sbjct: 637 GFKLPCQLHQVIVARFADDELIID----FDNFVRCLV 669
Score = 29.0 bits (64), Expect = 0.61
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE 116
GKL F +F + + +I K+ +K +T +SGT+ + L G L+
Sbjct: 789 GKLGFEEFKYLWN------NI-KKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHI 841
Query: 117 VDQIF-REANVTMNSKVRYEDFV 138
I R ++ T N + +++F+
Sbjct: 842 YSMIIRRYSDETGN--MDFDNFI 862
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 32.4 bits (74), Expect = 0.015
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 85 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
F D G V ++ + + G L S + I+ + K+ + F
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLSKDQFA 67
Score = 28.9 bits (65), Expect = 0.22
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 7 EQDIDEFRECFFLF--ARNGTIKTLDELSVIMRSLGMSPTIAELKKYLA--EKGGKLSFP 62
+ ++ E F +G + + E+ I G+ T+ L + GKLS
Sbjct: 6 PAEKAKYDEIFLKTDKDMDGFV-SGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKD 64
Query: 63 DFLKVMH----THSKAEDIPKEV 81
F H K D P +
Sbjct: 65 QFALAFHLISQKLIKGIDPPHVL 87
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 31.2 bits (71), Expect = 0.035
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 85 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
FK +G +P K L E+ I+ ++ + + ++F
Sbjct: 15 FKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALTLDEFC 66
Score = 30.1 bits (68), Expect = 0.086
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 7 EQDIDEFRECFFLFA--RNGTIKTLDELSVIMRSLGMSPTIAELKKYLA--EKGGKLSFP 62
++ + F NG I + L+ +K G L+
Sbjct: 5 DEQRQYYVNQFKTIQPDLNGFI-PGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLD 63
Query: 63 DFLKVMHTHSKA---EDIPKEV 81
+F H D+P+++
Sbjct: 64 EFCAAFHLVVARKNGYDLPEKL 85
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 31.5 bits (71), Expect = 0.063
Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 4 HFREQDIDEFRECFFLFARNGTIKTLDELSVIMRSLGMSPTIAELKKYL-----AEKGGK 58
+F ++++ F +G + + I + YL + G
Sbjct: 47 NFTKRELQVLYRGFKNECPSGVVN-EETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 105
Query: 59 LSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVL------VNWGEGL 112
+ F DF+ + + K + F D K G + + + ++ +
Sbjct: 106 VKFEDFVTALSILLRGTVHEK-LRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYP 164
Query: 113 SSKE------VDQIFREANVTMNSKVRYEDFVKIA 141
KE VD F++ + + V ++F++
Sbjct: 165 VLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.075
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 28/87 (32%)
Query: 5 FREQDIDEFRECF-----FLFARNGTIKT-----LDELSV--IMRSLGMSPTIA------ 46
F+E + F L A T T L E + ++S G+ P A
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSA---TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 47 --ELKKY--LAEKGGKLSFPDFLKVMH 69
E Y LA +S ++V+
Sbjct: 1764 LGE---YAALASLADVMSIESLVEVVF 1787
Score = 28.1 bits (62), Expect = 1.3
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 27/79 (34%)
Query: 1 MAHHFREQDIDEFREC------FFLFARN-----------GTIKTLDELSVIMRSLGM-- 41
+A F ++ + E + + N G ++ LD ++ ++ + +
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
Query: 42 --------SPTIAELKKYL 52
S ++ E++ +L
Sbjct: 1877 IDIIELQKSLSLEEVEGHL 1895
Score = 26.9 bits (59), Expect = 3.8
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 59/129 (45%)
Query: 34 VIMRSLGMSPTIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDA--FKAADTT 91
V + LG +P EL+ YL G HS+ +V A D+
Sbjct: 251 VTAKLLGFTP--GELRSYLK---GAT----------GHSQG------LVTAVAIAETDSW 289
Query: 92 KS---------------G----------TVPAKYLKHVLVNWGEG----------LSSKE 116
+S G ++P L+ L N EG L+ ++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNLTQEQ 348
Query: 117 VDQIFREAN 125
V + N
Sbjct: 349 VQDYVNKTN 357
Score = 26.2 bits (57), Expect = 5.7
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 42/120 (35%)
Query: 11 DEFRECF--------FLFARNGTIKTLDELSVI------MRSLGM-------SPTIAELK 49
+E R+ + L + +TL EL + + G+ +P+ K
Sbjct: 171 EELRDLYQTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 50 KYLAEKGGKLSFP-----------DFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPA 98
YL +S P K++ P E+ K A G V A
Sbjct: 229 DYLLSIP--ISCPLIGVIQLAHYVVTAKLLGFT------PGELRSYLKGATGHSQGLVTA 280
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 30.9 bits (69), Expect = 0.15
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
Query: 57 GKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAADTTKSGTVPAKYLKHVLVNWGEGLSSKE 116
GKL +F + I K ++ D +SGT+ + ++ L G L +
Sbjct: 590 GKLGLKEFYILWT------KIQKYQ-KIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQL 642
Query: 117 VDQI---FREANVTMNSKVRYEDFV 138
I F + + ++ +++FV
Sbjct: 643 HQVIVARFADDELIID----FDNFV 663
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 28.0 bits (62), Expect = 0.84
Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 12 EFRECFFLF-ARNGTIKTLDELSVIMRSLGMSP------TIAELKKYLAEKGGKLSFPDF 64
++ F G + + D I + + + + ++ G++SFP
Sbjct: 77 HYQHVFQKVQTSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPSL 136
Query: 65 LKVMHTHSKAEDIPKEVVDAFKAADTTKSGTV 96
+ + + + F+ G
Sbjct: 137 VCFLMRL-------EAMAKTFRNLSKDGKGLY 161
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 27.9 bits (62), Expect = 0.86
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 85 FKAADTTKSGTVPAKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFV 138
F + SG + ++ G L + QI+ A++ + ++ +F
Sbjct: 39 FHSLKP-ISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMDQVEFS 89
Score = 25.6 bits (56), Expect = 5.2
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 7 EQDIDEFRECFF-LFARNGTIKTLDELSVIMRSLGMSPTIAELKK--YLA--EKGGKLSF 61
++ + + F L +G I T D+ G+ L + LA G++
Sbjct: 29 VEERAKHDQQFHSLKPISGFI-TGDQARNFFFQSGLPQP--VLAQIWALADMNNDGRMDQ 85
Query: 62 PDFLKVMH 69
+F M
Sbjct: 86 VEFSIAMK 93
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding
proteins, murein tripeptide, periplasmi protein; HET:
MHI; 2.07A {Escherichia coli}
Length = 519
Score = 28.0 bits (63), Expect = 1.3
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 113 SSKEVDQIFREANVTMNSKVRYEDFVK 139
++ D++ +A+ K R D+
Sbjct: 444 NNPAYDKVLAQASTENTVKARNADYNA 470
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide
transport/peptide), peptide transport; 1.20A {Salmonella
typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A
1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A
1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A
1b7h_A ...
Length = 517
Score = 28.0 bits (63), Expect = 1.5
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 113 SSKEVDQIFREANVTMNSKVRYEDFVK 139
S D++ + + R E + K
Sbjct: 442 KSPAFDKLIADTLKVADDTQRSELYAK 468
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein,
ABC transport system; HET: GOL; 2.10A {Burkholderia
pseudomallei}
Length = 506
Score = 27.6 bits (62), Expect = 1.6
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 113 SSKEVDQIFREANVTMNSKVRYEDFVK 139
+ +VD + EAN ++ R +
Sbjct: 432 CNPKVDSLVAEANQKLDDGARAALLTQ 458
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 26.4 bits (59), Expect = 3.4
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 44 TIAELKKYLAEKG 56
+ ELK+YL + G
Sbjct: 238 DMRELKEYLKKHG 250
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 26.8 bits (60), Expect = 3.7
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 45 IAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKA 87
+ EL KL+ P F KA PKEVV+A +A
Sbjct: 809 LKELLALAERSQRKLASPGFR------EKA---PKEVVEAEEA 842
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
protein, holo, phosphopantetheine, transport protein;
HET: PNS; NMR {Aspergillus parasiticus}
Length = 89
Score = 25.2 bits (55), Expect = 4.8
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 43 PTIAELKKYLAEKGG 57
T+ LK ++ G
Sbjct: 73 TTVRALKDFMLGSGD 87
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 25.9 bits (58), Expect = 5.0
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 44 TIAELKKYLAEKG 56
+IA++K+YL E+G
Sbjct: 236 SIAQVKRYLKERG 248
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 25.9 bits (58), Expect = 5.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 44 TIAELKKYLAEKG 56
I +LK+YLAEKG
Sbjct: 234 PIPKLKRYLAEKG 246
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 26.0 bits (58), Expect = 5.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 44 TIAELKKYLAEKG 56
+ ELK+YL + G
Sbjct: 212 DVRELKEYLKKHG 224
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 25.9 bits (58), Expect = 5.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 44 TIAELKKYLAEKG 56
+ ELK+YL + G
Sbjct: 233 DVRELKEYLKKHG 245
>3rqt_A Putative uncharacterized protein; ligand binding component,
ABC-type import system, nickel, SI DI-peptides,
structural genomics; HET: MSE HIS EPE; 1.50A
{Staphylococcus aureus}
Length = 486
Score = 26.1 bits (58), Expect = 6.0
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 107 NWGEGLSSKEVDQIFREANVTMNSKVRYEDFVKI 140
N G ++ VD + + N T++ K R+ I
Sbjct: 407 NKG-DYNNSNVDDLINQLNHTVDVKERHNISNDI 439
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 25.8 bits (57), Expect = 7.0
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 44 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 88
EL K + L F +F+++ + D E+V ++
Sbjct: 198 IYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQ 242
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding
protein, DNA excision repair, proteasomal degrad
polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U
1p1a_A
Length = 85
Score = 24.5 bits (54), Expect = 7.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 25 TIKTLDELSVIMRSLGMSP--TIAELKKYLAEKGGKLSFP 62
T+KTL + + + M P T+ LK+ + + G+ +FP
Sbjct: 9 TLKTLQQQTF---KIRMEPDETVKVLKEKIEAEKGRDAFP 45
>3ktw_A SRP19, signal recognition particle 19 kDa protein;
ribonucleoprotein complex, RNA-RNA tertiary
interactions, AS loop, 7S RNA; 3.20A {Sulfolobus
solfataricus}
Length = 109
Score = 24.9 bits (54), Expect = 7.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 28 TLDELSVIMRSLGMSPTIAELKKY 51
+EL +R LG+ P + E KKY
Sbjct: 45 KTEELVSTLRELGLDPIVIENKKY 68
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative;
2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1
d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A*
2hs4_A* 2hru_A* 2hry_A*
Length = 615
Score = 25.8 bits (57), Expect = 7.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 TLDELSVIMRSLGMSPTIAEL 48
L L+++ LG PT EL
Sbjct: 14 KLRYLNILKEKLGREPTFVEL 34
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution
structure, structural genomics, PSI-2, protein structure
initiative; NMR {Homo sapiens}
Length = 184
Score = 25.2 bits (54), Expect = 8.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 98 AKYLKHVLVNWGEGLSSKEVDQIFREANVTMNSKVRYEDFVK 139
AK K V G+ ++ +VD +F + + YE+F K
Sbjct: 36 AKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKK 77
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 25.5 bits (56), Expect = 9.0
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 44 TIAELKKYLAEKGGKLSFPDFLKVMHTHSKAEDIPKEVVDAFKAA 88
+L K KL F +F+++ + D E+V F+
Sbjct: 195 IYDQLVKVRTAIAQKLGFKNFVELGYARLGRTDYNAEMVAKFRKQ 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,417,037
Number of extensions: 138754
Number of successful extensions: 1140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 269
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)