BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12591
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 89.4 bits (220), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S+ STS +LS+K R++YF RT+P D +Q KAM EI++ W+YVS + E +YG E
Sbjct: 145 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 204
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
E +ICIA EK+ + + +YD ++ +LL KP AR
Sbjct: 205 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 246
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+++ +TS +LS+K F+YF R +PSD Q +AMV+IVK+ W+YVS ++ E NYG E
Sbjct: 157 IAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYGESGME 216
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK-PRAR 105
+ + AK I IA K+ ++G E ++D ++ KL + P+AR
Sbjct: 217 AFKDMSAKEGISIAHSYKIYSNAG---EQSFDKLLKKLTSHLPKAR 259
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 84.0 bits (206), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S+ STS +LS+K R++YF RT+P D +Q KAM EI++ W+YVS + E +YG E
Sbjct: 144 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 203
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
E +I IA EK+ + + +YD ++ +LL KP AR
Sbjct: 204 AFEQEARLRNISIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 245
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 80.5 bits (197), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S+ ST+PELS+ +R+++F+R +P D Q +AMV+IVK LGW+YVS + E +YG K E
Sbjct: 145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVE 204
Query: 61 EL-EVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL 107
++ +CIA ++ ++ +D I+ +LL P +R +
Sbjct: 205 SFTQISKEAGGLCIAQSVRIPQERK-DRTIDFDRIIKQLLDTPNSRAV 251
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S+ ST+PELS+ +R+++F+R +P D Q +AMV+IVK LGW+YVS + E +YG K E
Sbjct: 145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVE 204
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETA-YDDIVLKLLTKPRARGL 107
++K + ++I + + + T +D I+ +LL P +R +
Sbjct: 205 SF-TQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+++ +TS +LS+K ++YF R +PSD Q +AM++IVK+ W+YVS ++ E NYG +
Sbjct: 151 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 210
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYD 92
+ L A+ +CIA +K+ ++G E ++D
Sbjct: 211 AFKELAAQEGLCIAHSDKIYSNAG---EKSFD 239
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 73.2 bits (178), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+++ +TS +LS+K ++YF R +PSD Q +AM++IVK+ W+YVS ++ E NYG +
Sbjct: 156 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 215
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYD 92
+ L A+ + IA +K+ ++G E ++D
Sbjct: 216 AFKELAAQEGLSIAHSDKIYSNAG---EKSFD 244
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+SF +T+P L++K+++ YF RT+PSD+ A+++++K W V + ++ V+ F
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQD----VQRFS 168
Query: 61 EL 62
E+
Sbjct: 169 EV 170
>pdb|3QEL|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|A Chain A, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|C Chain C, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 383
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 19 FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
F RT+P HQ E+++ W++V +I + + G A ++LE LL
Sbjct: 115 FLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLL 162
>pdb|3QEK|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
pdb|3QEK|B Chain B, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Glun1
Length = 384
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 19 FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
F RT+P HQ E + W++V +I + + G A ++LE LL
Sbjct: 116 FLRTVPPYSHQALVWFEXXRLFNWNHVILIVSDDHEGRAAQKKLETLL 163
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 19 FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
F RT+P HQ E+++ W+++ ++ + + G A + LE LL
Sbjct: 117 FLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLL 164
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 4 WSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELE 63
W P L NK F + P A++++V+ L W +++Y++S G+ +EL
Sbjct: 106 WKHHP-LDNKDTF--YVNLYPDYASLSHAILDLVQSLKWRSATVVYDDST-GLIRLQELI 161
Query: 64 VLLAKYSICIAIKE 77
+ ++Y+I + I++
Sbjct: 162 MAPSRYNIRLKIRQ 175
>pdb|2G7H|A Chain A, Structure Of An O6-Methylguanine Dna Methyltransferase
From Methanococcus Jannaschii (Mj1529)
Length = 167
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 79 LVKDSGVAEETAYDDIVLKLLTKPRARGL 107
+VKD + Y DI KL T PRA G+
Sbjct: 87 IVKDIEFGKTLTYGDIAKKLNTSPRAVGM 115
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 109 KRLKLVKDSGVAEETAYDDIVLKLLTKPRARAVS 142
K L +VKD + Y DI KL T PRA ++
Sbjct: 83 KVLDIVKDIEFGKTLTYGDIAKKLNTSPRAVGMA 116
>pdb|2Z8R|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw At 1.40
A Resolution
pdb|2Z8R|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw At 1.40
A Resolution
pdb|2Z8S|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Digalacturonic Acid
pdb|2Z8S|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Digalacturonic Acid
pdb|2ZUX|A Chain A, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Rhamnose
pdb|2ZUX|B Chain B, Crystal Structure Of Rhamnogalacturonan Lyase Yesw
Complexed With Rhamnose
Length = 591
Score = 26.2 bits (56), Expect = 6.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 19 FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEE 51
+T TIP++H M + V +LG ++ +I Y +
Sbjct: 528 YTTTIPTEHRLYTLMHDPVYRLGIAWQNIAYNQ 560
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,072,088
Number of Sequences: 62578
Number of extensions: 145114
Number of successful extensions: 373
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 23
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)