Query psy12591
Match_columns 144
No_of_seqs 151 out of 1365
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:14:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ks9_A Mglur1, metabotropic gl 99.9 6.7E-22 2.3E-26 159.8 13.0 135 1-138 156-317 (496)
2 3sm9_A Mglur3, metabotropic gl 99.9 6.2E-22 2.1E-26 159.4 12.1 117 1-121 144-280 (479)
3 2e4u_A Metabotropic glutamate 99.9 1.4E-21 4.7E-26 159.6 12.9 133 1-136 145-301 (555)
4 3mq4_A Mglur7, metabotropic gl 99.8 2.1E-21 7.3E-26 156.1 3.5 110 1-111 145-255 (481)
5 3qel_B Glutamate [NMDA] recept 99.8 1.9E-20 6.6E-25 146.0 7.8 125 1-138 94-224 (364)
6 1jdp_A NPR-C, atrial natriuret 99.8 4.1E-20 1.4E-24 146.2 9.7 105 1-112 112-220 (441)
7 3qek_A NMDA glutamate receptor 99.8 1.3E-19 4.3E-24 141.1 10.3 109 1-112 98-224 (384)
8 4f11_A Gamma-aminobutyric acid 99.8 8.7E-19 3E-23 138.2 10.4 121 1-135 113-233 (433)
9 1dp4_A Atrial natriuretic pept 99.8 6.1E-19 2.1E-23 138.8 7.6 104 1-112 105-215 (435)
10 3h6g_A Glutamate receptor, ion 99.7 2.1E-17 7.3E-22 128.8 10.3 102 1-112 99-200 (395)
11 3om0_A Glutamate receptor, ion 99.6 4.2E-16 1.4E-20 121.5 7.5 99 2-112 100-200 (393)
12 3hsy_A Glutamate receptor 2; l 99.6 3.5E-15 1.2E-19 116.0 10.1 92 15-112 97-188 (376)
13 3o21_A Glutamate receptor 3; p 99.6 1.6E-14 5.4E-19 113.0 11.9 88 16-112 107-194 (389)
14 3kg2_A Glutamate receptor 2; I 99.6 1.5E-14 5.1E-19 122.0 11.3 112 14-136 96-207 (823)
15 3saj_A Glutamate receptor 1; r 99.6 1.4E-14 4.7E-19 112.8 10.1 87 16-112 105-191 (384)
16 4gpa_A Glutamate receptor 4; P 99.6 1.2E-14 4E-19 112.2 9.2 117 4-137 97-213 (389)
17 3n0w_A ABC branched chain amin 99.5 2.5E-14 8.5E-19 110.7 9.2 105 1-111 101-205 (379)
18 4f06_A Extracellular ligand-bi 99.5 2.2E-14 7.6E-19 111.1 8.7 103 1-111 100-202 (371)
19 3i09_A Periplasmic branched-ch 99.5 5E-14 1.7E-18 108.7 10.3 105 1-111 99-203 (375)
20 3i45_A Twin-arginine transloca 99.5 4.9E-14 1.7E-18 109.4 9.9 104 2-111 102-207 (387)
21 3h5l_A Putative branched-chain 99.5 1.3E-13 4.6E-18 108.0 8.9 92 13-110 127-226 (419)
22 3n0x_A Possible substrate bind 99.5 8.9E-14 3.1E-18 107.6 7.0 102 2-110 102-208 (374)
23 4eyg_A Twin-arginine transloca 99.5 3.6E-13 1.2E-17 103.3 10.2 102 2-111 101-202 (368)
24 4evq_A Putative ABC transporte 99.4 6.7E-13 2.3E-17 102.0 9.9 104 2-111 111-214 (375)
25 3ipc_A ABC transporter, substr 99.4 6.1E-13 2.1E-17 101.7 7.3 103 2-111 98-201 (356)
26 3lop_A Substrate binding perip 99.4 7.1E-13 2.4E-17 101.9 6.8 101 2-111 104-204 (364)
27 3td9_A Branched chain amino ac 99.4 2E-12 6.9E-17 99.3 9.1 101 2-111 110-212 (366)
28 3eaf_A ABC transporter, substr 99.3 3E-12 1E-16 99.5 9.0 91 15-111 113-207 (391)
29 3sg0_A Extracellular ligand-bi 99.3 2.4E-12 8.3E-17 99.0 8.2 104 2-111 118-222 (386)
30 1usg_A Leucine-specific bindin 99.3 3.1E-12 1.1E-16 97.2 8.3 103 2-111 98-201 (346)
31 3lkb_A Probable branched-chain 99.3 2.7E-12 9.3E-17 99.5 7.8 98 8-111 108-206 (392)
32 3hut_A Putative branched-chain 99.3 9E-12 3.1E-16 95.3 9.2 102 2-111 101-202 (358)
33 3snr_A Extracellular ligand-bi 99.3 2.6E-11 9.1E-16 92.3 9.4 92 14-111 107-198 (362)
34 4gnr_A ABC transporter substra 99.1 4.9E-10 1.7E-14 85.6 9.4 100 1-111 103-204 (353)
35 1pea_A Amidase operon; gene re 99.0 4.8E-09 1.7E-13 81.1 11.5 93 15-111 113-205 (385)
36 3ckm_A YRAM (HI1655), LPOA; pe 98.8 9.2E-09 3.1E-13 78.3 7.5 89 15-111 97-185 (327)
37 2h4a_A YRAM (HI1655); perplasm 98.8 4.3E-09 1.5E-13 80.9 4.6 86 16-111 98-183 (325)
38 3ixl_A Amdase, arylmalonate de 95.1 0.26 8.8E-06 35.9 10.0 84 28-115 103-192 (240)
39 3bfj_A 1,3-propanediol oxidore 94.1 0.24 8.2E-06 38.4 8.1 77 32-112 23-101 (387)
40 3ox4_A Alcohol dehydrogenase 2 94.0 0.13 4.5E-06 39.9 6.4 77 32-112 21-97 (383)
41 1vlj_A NADH-dependent butanol 92.4 0.67 2.3E-05 36.2 8.3 77 32-112 33-110 (407)
42 2xed_A Putative maleate isomer 92.3 2.5 8.7E-05 31.1 11.8 82 30-115 134-220 (273)
43 1rrm_A Lactaldehyde reductase; 92.2 0.28 9.5E-06 38.0 5.8 77 32-112 21-97 (386)
44 2qh8_A Uncharacterized protein 91.6 1 3.4E-05 33.0 8.2 72 30-110 126-200 (302)
45 3lft_A Uncharacterized protein 91.2 1.7 5.9E-05 31.5 9.1 73 29-110 118-193 (295)
46 1o2d_A Alcohol dehydrogenase, 91.0 1.4 4.8E-05 33.9 8.7 75 33-112 32-107 (371)
47 2dgd_A 223AA long hypothetical 90.3 3.5 0.00012 29.0 10.0 81 30-114 96-182 (223)
48 2h3h_A Sugar ABC transporter, 89.9 2.2 7.4E-05 31.2 8.6 86 20-110 99-189 (313)
49 3uhj_A Probable glycerol dehyd 89.0 0.71 2.4E-05 35.9 5.6 72 32-111 43-114 (387)
50 1mkz_A Molybdenum cofactor bio 89.0 3.7 0.00013 28.0 8.7 64 43-111 11-77 (172)
51 3ce9_A Glycerol dehydrogenase; 88.6 2.5 8.6E-05 32.1 8.3 73 33-112 25-97 (354)
52 3iwt_A 178AA long hypothetical 85.7 3.6 0.00012 28.0 7.1 63 44-111 17-89 (178)
53 1jq5_A Glycerol dehydrogenase; 85.6 2.7 9.2E-05 32.1 7.0 72 33-111 23-94 (370)
54 3brq_A HTH-type transcriptiona 85.1 1.9 6.5E-05 30.9 5.7 87 21-110 118-207 (296)
55 2pjk_A 178AA long hypothetical 83.7 7.8 0.00027 26.6 8.1 67 40-111 13-89 (178)
56 3ksm_A ABC-type sugar transpor 83.6 3.9 0.00013 28.8 6.8 86 20-110 101-194 (276)
57 2fvy_A D-galactose-binding per 83.3 10 0.00035 27.1 10.2 90 18-110 104-210 (309)
58 1y5e_A Molybdenum cofactor bio 83.3 8.4 0.00029 26.1 8.4 66 41-111 12-80 (169)
59 3d8u_A PURR transcriptional re 83.3 7.9 0.00027 27.3 8.3 87 21-110 99-188 (275)
60 3hl0_A Maleylacetate reductase 83.1 4.1 0.00014 31.1 7.0 73 32-112 24-96 (353)
61 3gv0_A Transcriptional regulat 83.0 10 0.00035 27.0 9.0 86 22-110 107-195 (288)
62 2qu7_A Putative transcriptiona 82.2 2.6 8.8E-05 30.2 5.4 54 20-73 100-155 (288)
63 1dbq_A Purine repressor; trans 82.1 3.3 0.00011 29.5 5.9 87 21-110 105-194 (289)
64 3rot_A ABC sugar transporter, 82.1 12 0.0004 26.9 10.0 87 18-110 104-195 (297)
65 3gyb_A Transcriptional regulat 81.8 3.9 0.00013 29.1 6.2 85 22-110 98-183 (280)
66 2h0a_A TTHA0807, transcription 81.4 4.2 0.00014 28.7 6.3 52 22-73 94-152 (276)
67 1xvl_A Mn transporter, MNTC pr 81.1 9.8 0.00034 28.6 8.4 74 35-118 216-292 (321)
68 2rjo_A Twin-arginine transloca 80.8 13 0.00044 27.2 8.9 88 18-110 110-204 (332)
69 3brs_A Periplasmic binding pro 80.3 11 0.00037 26.7 8.2 87 19-110 106-197 (289)
70 3gbv_A Putative LACI-family tr 80.1 7.2 0.00025 27.8 7.2 53 21-73 112-172 (304)
71 3m9w_A D-xylose-binding peripl 80.1 9.4 0.00032 27.6 7.9 23 52-74 14-36 (313)
72 3o74_A Fructose transport syst 79.9 13 0.00044 26.0 10.3 54 22-75 100-155 (272)
73 3g1w_A Sugar ABC transporter; 79.6 13 0.00045 26.5 8.6 88 20-110 103-194 (305)
74 3gbv_A Putative LACI-family tr 78.2 15 0.0005 26.2 8.4 65 43-111 9-77 (304)
75 3k4h_A Putative transcriptiona 77.7 6.2 0.00021 28.1 6.2 87 21-110 110-199 (292)
76 3rfq_A Pterin-4-alpha-carbinol 77.2 8.4 0.00029 26.7 6.5 63 43-111 31-97 (185)
77 2fn9_A Ribose ABC transporter, 77.1 13 0.00045 26.4 7.8 84 22-110 103-198 (290)
78 2is8_A Molybdopterin biosynthe 77.0 11 0.00039 25.2 7.0 63 44-111 3-70 (164)
79 2iks_A DNA-binding transcripti 76.7 18 0.0006 25.8 8.4 82 24-110 120-204 (293)
80 1oj7_A Hypothetical oxidoreduc 76.4 6.1 0.00021 30.6 6.2 72 33-112 43-115 (408)
81 3jzd_A Iron-containing alcohol 76.1 8.1 0.00028 29.5 6.7 72 32-111 26-97 (358)
82 3l6u_A ABC-type sugar transpor 75.4 12 0.00041 26.6 7.2 87 19-110 105-202 (293)
83 3g1w_A Sugar ABC transporter; 75.3 7.4 0.00025 28.0 6.1 22 53-74 17-38 (305)
84 2fqx_A Membrane lipoprotein TM 75.3 13 0.00044 27.4 7.5 22 54-75 21-42 (318)
85 3clk_A Transcription regulator 75.2 6 0.00021 28.3 5.5 52 22-73 105-158 (290)
86 3hs3_A Ribose operon repressor 75.2 13 0.00045 26.4 7.3 67 38-111 6-75 (277)
87 3gi1_A LBP, laminin-binding pr 75.1 9.7 0.00033 28.1 6.7 65 36-110 192-258 (286)
88 3c3k_A Alanine racemase; struc 75.1 16 0.00054 26.0 7.8 53 22-74 104-158 (285)
89 3e3m_A Transcriptional regulat 75.0 23 0.00077 26.2 9.0 54 21-74 166-222 (355)
90 1ta9_A Glycerol dehydrogenase; 75.0 8.1 0.00028 30.6 6.5 73 32-111 81-153 (450)
91 2x7x_A Sensor protein; transfe 74.9 22 0.00074 25.9 8.9 56 20-75 104-164 (325)
92 3g85_A Transcriptional regulat 74.8 8.1 0.00028 27.5 6.1 87 21-110 106-195 (289)
93 2g2c_A Putative molybdenum cof 73.8 11 0.00038 25.4 6.3 62 44-111 7-77 (167)
94 2o20_A Catabolite control prot 73.7 5.1 0.00018 29.4 4.9 52 22-73 160-213 (332)
95 2hqb_A Transcriptional activat 73.4 9.7 0.00033 27.7 6.3 21 53-73 20-40 (296)
96 3lkv_A Uncharacterized conserv 73.3 16 0.00055 26.6 7.5 71 30-109 126-199 (302)
97 3qk7_A Transcriptional regulat 73.0 17 0.00057 26.0 7.5 52 22-73 106-159 (294)
98 1pq4_A Periplasmic binding pro 72.7 5.2 0.00018 29.6 4.7 44 36-79 203-246 (291)
99 2prs_A High-affinity zinc upta 72.4 13 0.00043 27.3 6.7 64 36-109 187-252 (284)
100 3kbq_A Protein TA0487; structu 72.3 11 0.00038 25.8 6.0 61 44-111 5-70 (172)
101 3lft_A Uncharacterized protein 71.5 11 0.00037 27.1 6.2 16 56-71 17-32 (295)
102 3ujp_A Mn transporter subunit; 71.5 28 0.00097 25.9 8.6 70 35-114 202-274 (307)
103 2fep_A Catabolite control prot 71.2 8.3 0.00028 27.6 5.4 52 22-73 113-167 (289)
104 3s99_A Basic membrane lipoprot 70.9 10 0.00035 28.9 6.1 61 43-110 27-93 (356)
105 3cs3_A Sugar-binding transcrip 70.9 24 0.00084 24.8 10.5 86 19-110 95-184 (277)
106 1toa_A Tromp-1, protein (perip 70.9 26 0.00088 26.2 8.2 73 36-116 210-288 (313)
107 3mwd_B ATP-citrate synthase; A 70.8 14 0.0005 28.0 6.9 77 43-128 169-245 (334)
108 3bbl_A Regulatory protein of L 70.5 10 0.00035 27.0 5.8 86 22-110 105-195 (287)
109 3uug_A Multiple sugar-binding 70.3 15 0.0005 26.7 6.7 10 34-43 26-35 (330)
110 3kjx_A Transcriptional regulat 69.9 6.6 0.00023 29.0 4.8 86 22-110 165-254 (344)
111 3dbi_A Sugar-binding transcrip 69.9 21 0.00072 26.1 7.6 64 41-111 60-127 (338)
112 8abp_A L-arabinose-binding pro 69.9 15 0.00052 26.2 6.7 10 34-43 25-34 (306)
113 1jlj_A Gephyrin; globular alph 69.6 22 0.00074 24.6 7.1 66 41-111 13-86 (189)
114 3tb6_A Arabinose metabolism tr 69.5 17 0.00057 25.7 6.8 62 43-111 16-79 (298)
115 3ctp_A Periplasmic binding pro 69.4 3.8 0.00013 30.2 3.3 50 25-74 155-206 (330)
116 2rgy_A Transcriptional regulat 69.1 10 0.00034 27.1 5.5 52 22-73 108-161 (290)
117 3dbi_A Sugar-binding transcrip 69.1 9.5 0.00032 28.0 5.5 86 22-110 161-249 (338)
118 3hcw_A Maltose operon transcri 68.9 29 0.00098 24.8 8.6 50 25-74 114-165 (295)
119 3jy6_A Transcriptional regulat 68.8 18 0.00063 25.4 6.8 33 43-75 8-42 (276)
120 3l49_A ABC sugar (ribose) tran 68.7 24 0.00082 24.9 7.5 88 21-110 102-198 (291)
121 3cx3_A Lipoprotein; zinc-bindi 68.4 13 0.00045 27.2 6.1 64 36-109 190-255 (284)
122 3kke_A LACI family transcripti 68.3 19 0.00065 25.9 6.9 62 43-111 16-79 (303)
123 3d02_A Putative LACI-type tran 68.2 13 0.00043 26.6 5.9 10 34-43 27-36 (303)
124 3jy6_A Transcriptional regulat 68.2 28 0.00096 24.4 8.1 83 22-110 103-188 (276)
125 2hsg_A Glucose-resistance amyl 68.0 7.8 0.00027 28.4 4.8 50 24-73 159-211 (332)
126 1jye_A Lactose operon represso 67.8 19 0.00066 26.6 7.0 63 42-110 61-125 (349)
127 3hh8_A Metal ABC transporter s 67.6 12 0.00041 27.7 5.7 43 36-78 196-240 (294)
128 3ksm_A ABC-type sugar transpor 67.6 8.6 0.00029 27.0 4.8 9 34-42 23-31 (276)
129 3rot_A ABC sugar transporter, 67.3 11 0.00038 27.0 5.4 23 52-74 15-37 (297)
130 3k9c_A Transcriptional regulat 67.1 28 0.00096 24.7 7.6 62 42-111 12-74 (289)
131 3k4h_A Putative transcriptiona 66.6 21 0.00073 25.2 6.9 21 53-73 26-46 (292)
132 1qpz_A PURA, protein (purine n 66.4 14 0.0005 27.0 6.0 84 24-110 159-245 (340)
133 3o74_A Fructose transport syst 66.2 16 0.00053 25.6 6.0 31 44-74 4-36 (272)
134 4fe7_A Xylose operon regulator 66.1 41 0.0014 25.5 9.4 53 22-74 119-175 (412)
135 3k9c_A Transcriptional regulat 65.8 26 0.00091 24.9 7.3 86 21-110 105-192 (289)
136 2fn9_A Ribose ABC transporter, 65.8 20 0.0007 25.3 6.6 12 32-43 23-34 (290)
137 3l49_A ABC sugar (ribose) tran 65.6 13 0.00046 26.3 5.6 16 57-72 22-37 (291)
138 1byk_A Protein (trehalose oper 65.5 25 0.00087 24.3 7.0 49 25-73 98-149 (255)
139 3egc_A Putative ribose operon 64.9 12 0.00041 26.6 5.2 54 20-73 103-158 (291)
140 3o1i_D Periplasmic protein TOR 64.9 14 0.00048 26.3 5.6 32 44-75 7-40 (304)
141 3hs3_A Ribose operon repressor 64.6 24 0.00082 24.9 6.8 55 21-76 102-158 (277)
142 1dbq_A Purine repressor; trans 64.0 20 0.00067 25.3 6.2 7 36-42 32-38 (289)
143 3miz_A Putative transcriptiona 63.4 37 0.0013 24.1 7.7 67 39-112 10-79 (301)
144 1jx6_A LUXP protein; protein-l 63.4 27 0.00093 25.4 7.1 30 44-73 45-77 (342)
145 2qu7_A Putative transcriptiona 63.4 22 0.00076 25.1 6.4 62 43-111 9-71 (288)
146 3huu_A Transcription regulator 63.0 16 0.00055 26.2 5.6 64 41-111 21-91 (305)
147 3h5o_A Transcriptional regulat 63.0 39 0.0013 24.6 7.8 64 41-111 61-126 (339)
148 3mfq_A TROA, high-affinity zin 62.6 11 0.00037 27.8 4.6 68 36-110 176-245 (282)
149 2fep_A Catabolite control prot 62.5 20 0.00067 25.6 6.0 31 44-74 18-50 (289)
150 2vk2_A YTFQ, ABC transporter p 62.4 37 0.0013 24.3 7.5 51 21-71 104-159 (306)
151 3brs_A Periplasmic binding pro 62.4 13 0.00046 26.3 5.0 9 35-43 31-39 (289)
152 3l6u_A ABC-type sugar transpor 62.2 23 0.00078 25.0 6.3 9 35-43 32-40 (293)
153 1di6_A MOGA, molybdenum cofact 61.7 37 0.0013 23.5 7.4 63 44-111 5-74 (195)
154 3brq_A HTH-type transcriptiona 61.5 30 0.001 24.4 6.8 32 43-74 20-55 (296)
155 3o1i_D Periplasmic protein TOR 61.3 40 0.0014 23.8 7.9 59 18-76 107-172 (304)
156 3e61_A Putative transcriptiona 60.9 14 0.00049 25.9 5.0 31 44-74 10-42 (277)
157 1sg6_A Pentafunctional AROM po 60.5 39 0.0013 25.9 7.7 73 36-111 30-113 (393)
158 3okf_A 3-dehydroquinate syntha 60.3 32 0.0011 26.7 7.1 73 36-111 56-131 (390)
159 3e61_A Putative transcriptiona 60.2 14 0.00049 26.0 4.8 53 23-75 103-157 (277)
160 3kke_A LACI family transcripti 60.1 18 0.00062 26.0 5.5 51 23-73 112-164 (303)
161 1byk_A Protein (trehalose oper 60.0 28 0.00095 24.1 6.3 61 44-111 4-66 (255)
162 3egc_A Putative ribose operon 59.5 27 0.00094 24.7 6.3 33 43-75 9-43 (291)
163 2h3h_A Sugar ABC transporter, 59.2 23 0.00079 25.5 5.9 10 34-43 23-32 (313)
164 3rf7_A Iron-containing alcohol 59.0 25 0.00084 27.1 6.2 73 32-112 40-118 (375)
165 3d02_A Putative LACI-type tran 58.9 41 0.0014 23.8 7.2 89 18-110 101-196 (303)
166 3miz_A Putative transcriptiona 58.8 14 0.00047 26.5 4.6 50 24-73 113-164 (301)
167 3h5o_A Transcriptional regulat 58.8 50 0.0017 24.0 7.8 50 22-71 158-208 (339)
168 1tjy_A Sugar transport protein 58.2 16 0.00053 26.6 4.8 8 35-42 27-34 (316)
169 2qh8_A Uncharacterized protein 57.7 29 0.001 24.9 6.3 12 31-42 27-38 (302)
170 1uuy_A CNX1, molybdopterin bio 57.2 22 0.00076 23.8 5.2 64 43-111 6-79 (167)
171 3hcw_A Maltose operon transcri 56.8 15 0.0005 26.4 4.4 21 53-73 25-45 (295)
172 3p6l_A Sugar phosphate isomera 56.8 47 0.0016 23.2 7.9 76 31-111 25-112 (262)
173 1jye_A Lactose operon represso 56.6 37 0.0013 25.0 6.8 49 25-73 162-212 (349)
174 3c3k_A Alanine racemase; struc 56.5 43 0.0015 23.6 6.9 31 44-74 10-42 (285)
175 2pbq_A Molybdenum cofactor bio 56.5 41 0.0014 22.8 6.5 62 44-111 7-76 (178)
176 3kjx_A Transcriptional regulat 56.3 50 0.0017 24.1 7.5 61 43-110 69-131 (344)
177 1gud_A ALBP, D-allose-binding 56.1 36 0.0012 24.1 6.5 9 35-43 25-33 (288)
178 2o1e_A YCDH; alpha-beta protei 55.7 5.1 0.00017 30.0 1.8 44 35-78 202-247 (312)
179 3h16_A TIR protein; bacteria T 55.2 27 0.00091 23.0 5.2 56 15-73 20-78 (154)
180 2dri_A D-ribose-binding protei 54.8 35 0.0012 23.9 6.2 13 32-44 22-34 (271)
181 2l69_A Rossmann 2X3 fold prote 54.0 23 0.00077 22.0 4.2 39 17-55 26-64 (134)
182 3e3m_A Transcriptional regulat 54.0 36 0.0012 25.0 6.3 63 42-111 70-134 (355)
183 3clk_A Transcription regulator 53.7 30 0.001 24.5 5.7 31 44-74 10-42 (290)
184 3gv0_A Transcriptional regulat 53.3 32 0.0011 24.3 5.8 22 53-74 23-44 (288)
185 2iks_A DNA-binding transcripti 53.2 42 0.0014 23.7 6.4 32 43-74 21-54 (293)
186 3jvd_A Transcriptional regulat 53.0 63 0.0022 23.5 8.7 51 22-72 154-206 (333)
187 3gyb_A Transcriptional regulat 52.9 26 0.00087 24.6 5.2 58 43-108 6-65 (280)
188 2ioy_A Periplasmic sugar-bindi 52.8 30 0.001 24.4 5.6 12 32-43 22-33 (283)
189 1qpz_A PURA, protein (purine n 52.4 65 0.0022 23.4 8.1 63 42-111 58-122 (340)
190 2fvy_A D-galactose-binding per 51.6 33 0.0011 24.4 5.6 12 31-42 22-33 (309)
191 3d8u_A PURR transcriptional re 51.5 27 0.00094 24.3 5.1 19 54-72 17-35 (275)
192 3iv7_A Alcohol dehydrogenase I 51.4 13 0.00043 28.6 3.4 70 32-111 27-96 (364)
193 1xah_A Sadhqs, 3-dehydroquinat 51.4 41 0.0014 25.3 6.3 71 33-111 24-98 (354)
194 3lkv_A Uncharacterized conserv 51.3 44 0.0015 24.2 6.4 62 44-110 10-76 (302)
195 3h75_A Periplasmic sugar-bindi 50.9 58 0.002 23.8 7.0 11 33-43 26-36 (350)
196 3tb6_A Arabinose metabolism tr 50.7 32 0.0011 24.2 5.4 52 22-73 117-169 (298)
197 3o6p_A Peptide ABC transporter 50.5 22 0.00075 24.6 4.4 44 33-76 83-134 (229)
198 3huu_A Transcription regulator 50.3 40 0.0014 24.0 6.0 53 22-74 124-178 (305)
199 3qk7_A Transcriptional regulat 48.3 46 0.0016 23.6 6.0 21 54-74 24-44 (294)
200 3mje_A AMPHB; rossmann fold, o 48.1 1E+02 0.0035 24.5 10.3 83 24-112 246-328 (496)
201 2csu_A 457AA long hypothetical 47.6 68 0.0023 25.2 7.2 52 58-113 161-212 (457)
202 3bbl_A Regulatory protein of L 47.6 41 0.0014 23.7 5.6 12 32-43 29-40 (287)
203 2rb4_A ATP-dependent RNA helic 47.2 58 0.002 21.4 8.6 89 20-121 12-100 (175)
204 2o20_A Catabolite control prot 47.0 48 0.0016 24.0 6.0 63 42-111 63-127 (332)
205 2vvp_A Ribose-5-phosphate isom 46.9 63 0.0022 21.9 6.0 63 50-113 9-72 (162)
206 3dmy_A Protein FDRA; predicted 46.7 1E+02 0.0035 24.6 8.1 65 44-112 114-180 (480)
207 3h5t_A Transcriptional regulat 46.6 40 0.0014 24.9 5.5 51 22-72 169-238 (366)
208 3pam_A Transmembrane protein; 46.5 63 0.0022 22.6 6.4 47 29-76 101-161 (259)
209 2yv1_A Succinyl-COA ligase [AD 46.0 86 0.0029 23.0 7.4 51 60-112 164-214 (294)
210 3ctp_A Periplasmic binding pro 45.8 77 0.0026 22.9 7.0 62 42-111 60-123 (330)
211 3lmz_A Putative sugar isomeras 45.6 74 0.0025 22.1 7.1 75 31-110 33-109 (257)
212 1oi7_A Succinyl-COA synthetase 45.3 77 0.0026 23.2 6.8 51 60-112 158-208 (288)
213 1o1x_A Ribose-5-phosphate isom 45.3 68 0.0023 21.6 6.4 68 44-113 12-80 (155)
214 3s5p_A Ribose 5-phosphate isom 45.2 71 0.0024 21.8 7.1 65 47-113 24-89 (166)
215 2h0a_A TTHA0807, transcription 45.1 29 0.001 24.2 4.4 22 53-74 12-33 (276)
216 2amj_A Modulator of drug activ 44.9 72 0.0025 21.8 7.2 64 39-112 9-79 (204)
217 2nu8_A Succinyl-COA ligase [AD 44.7 74 0.0025 23.2 6.6 53 59-113 157-209 (288)
218 3f2v_A General stress protein 44.6 56 0.0019 22.4 5.7 63 44-111 3-66 (192)
219 2hsg_A Glucose-resistance amyl 44.2 75 0.0026 22.9 6.7 62 43-111 61-124 (332)
220 2rgy_A Transcriptional regulat 44.2 52 0.0018 23.2 5.7 20 54-73 22-41 (290)
221 2yv2_A Succinyl-COA synthetase 44.2 90 0.0031 22.9 7.1 51 60-112 165-215 (297)
222 3bvp_A INT, TP901-1 integrase; 43.7 61 0.0021 20.6 7.0 81 27-110 24-109 (138)
223 2fp4_A Succinyl-COA ligase [GD 43.3 98 0.0033 22.9 7.5 52 60-113 166-217 (305)
224 1jx6_A LUXP protein; protein-l 43.2 91 0.0031 22.5 8.3 51 21-71 152-205 (342)
225 1zvp_A Hypothetical protein VC 43.1 32 0.0011 22.5 3.9 62 38-99 67-128 (133)
226 3g85_A Transcriptional regulat 42.6 15 0.00051 26.0 2.5 32 43-74 12-46 (289)
227 2ioy_A Periplasmic sugar-bindi 42.3 86 0.0029 21.9 9.8 51 25-75 104-159 (283)
228 4dik_A Flavoprotein; TM0755, e 41.7 1.2E+02 0.0041 23.4 9.0 34 43-77 266-301 (410)
229 3guv_A Site-specific recombina 41.5 73 0.0025 20.9 8.6 80 29-111 27-113 (167)
230 2vk2_A YTFQ, ABC transporter p 41.3 44 0.0015 23.8 5.0 12 32-43 23-34 (306)
231 2rjo_A Twin-arginine transloca 40.9 37 0.0013 24.6 4.5 13 31-43 25-37 (332)
232 3ph3_A Ribose-5-phosphate isom 40.6 85 0.0029 21.4 6.6 65 47-113 23-88 (169)
233 3he8_A Ribose-5-phosphate isom 40.3 81 0.0028 21.0 6.6 64 48-113 4-68 (149)
234 1tjy_A Sugar transport protein 39.9 1E+02 0.0035 22.1 9.7 83 23-110 106-196 (316)
235 3fni_A Putative diflavin flavo 39.7 78 0.0027 20.7 7.2 18 25-42 17-34 (159)
236 2x7x_A Sensor protein; transfe 39.3 78 0.0027 22.8 6.1 8 92-99 77-84 (325)
237 1kq3_A Glycerol dehydrogenase; 39.3 12 0.00041 28.6 1.6 71 32-111 32-102 (376)
238 2dri_A D-ribose-binding protei 39.1 95 0.0032 21.5 7.7 51 25-75 104-158 (271)
239 1xmx_A Hypothetical protein VC 38.7 1.3E+02 0.0045 23.0 8.0 49 28-78 13-62 (385)
240 3h75_A Periplasmic sugar-bindi 38.3 1.1E+02 0.0038 22.1 9.3 53 19-71 115-176 (350)
241 1g8l_A Molybdopterin biosynthe 38.0 94 0.0032 24.2 6.5 47 58-111 205-251 (411)
242 2vvr_A Ribose-5-phosphate isom 37.8 89 0.003 20.8 6.7 62 50-113 7-69 (149)
243 2au3_A DNA primase; zinc ribbo 37.7 76 0.0026 24.4 6.0 50 31-82 277-326 (407)
244 3u9l_A 3-oxoacyl-[acyl-carrier 37.6 1.2E+02 0.0041 22.3 9.2 86 23-113 11-97 (324)
245 3lvu_A ABC transporter, peripl 37.6 55 0.0019 22.9 4.9 48 29-76 100-162 (258)
246 3m9w_A D-xylose-binding peripl 36.9 1.1E+02 0.0038 21.7 9.5 85 22-110 102-195 (313)
247 3bil_A Probable LACI-family tr 36.9 55 0.0019 24.0 5.0 62 43-111 67-130 (348)
248 2bw0_A 10-FTHFDH, 10-formyltet 36.1 69 0.0024 24.1 5.4 75 28-110 32-106 (329)
249 2gjf_A Designed protein; proca 35.9 62 0.0021 18.4 4.8 23 16-38 8-30 (78)
250 3jrn_A AT1G72930 protein; TIR 35.5 21 0.00071 24.6 2.2 15 58-72 24-38 (176)
251 3bil_A Probable LACI-family tr 35.5 1.3E+02 0.0044 22.0 7.1 48 24-71 166-215 (348)
252 3c5y_A Ribose/galactose isomer 35.2 90 0.0031 22.5 5.5 74 39-113 16-94 (231)
253 1fuk_A Eukaryotic initiation f 35.1 90 0.0031 20.1 8.4 86 23-121 11-96 (165)
254 1gud_A ALBP, D-allose-binding 34.7 1.2E+02 0.004 21.3 9.3 50 26-75 114-169 (288)
255 1uz5_A MOEA protein, 402AA lon 34.6 1E+02 0.0035 23.9 6.2 73 32-111 162-254 (402)
256 4es6_A Uroporphyrinogen-III sy 34.5 42 0.0014 23.7 3.8 54 24-82 110-168 (254)
257 3jvd_A Transcriptional regulat 34.4 63 0.0021 23.5 4.9 63 41-111 63-127 (333)
258 1t5i_A C_terminal domain of A 34.2 98 0.0034 20.2 7.7 81 28-121 17-97 (172)
259 3h7a_A Short chain dehydrogena 33.9 1.2E+02 0.0041 21.1 9.5 79 24-112 14-92 (252)
260 3ksu_A 3-oxoacyl-acyl carrier 33.2 1.2E+02 0.0043 21.2 10.2 88 18-113 13-101 (262)
261 3rqt_A Putative uncharacterize 32.8 1.1E+02 0.0038 23.8 6.3 47 31-77 311-363 (486)
262 3zs6_A Periplasmic oligopeptid 32.2 94 0.0032 24.3 5.8 46 31-76 332-383 (506)
263 3v8e_A Nicotinamidase; hydrola 32.0 1.3E+02 0.0044 20.9 8.8 71 30-107 142-214 (216)
264 3v4g_A Arginine repressor; vib 31.9 76 0.0026 21.9 4.6 32 17-51 119-152 (180)
265 3ngx_A Bifunctional protein fo 31.4 1.3E+02 0.0046 22.1 6.1 65 43-112 28-93 (276)
266 3sc4_A Short chain dehydrogena 31.0 1.4E+02 0.0049 21.2 8.9 84 24-113 16-103 (285)
267 3rpe_A MDAB, modulator of drug 30.9 1.3E+02 0.0045 21.1 5.9 60 43-112 26-92 (218)
268 4gqr_A Pancreatic alpha-amylas 30.9 38 0.0013 26.0 3.3 21 87-108 75-95 (496)
269 3gbc_A Pyrazinamidase/nicotina 30.8 1.2E+02 0.0042 20.4 9.7 70 30-106 113-182 (186)
270 3kks_A Integrase, IN; beta-str 30.4 97 0.0033 19.2 4.8 49 26-79 38-87 (152)
271 1wu2_A MOEA protein, molybdopt 30.0 1.2E+02 0.0042 23.3 6.0 73 32-111 164-258 (396)
272 3o9p_A Periplasmic murein pept 29.8 89 0.003 24.5 5.3 46 31-76 344-395 (519)
273 2fts_A Gephyrin; gephyrin, neu 29.7 1E+02 0.0035 24.0 5.5 47 58-111 209-255 (419)
274 2jgn_A DBX, DDX3, ATP-dependen 29.5 1.3E+02 0.0043 20.0 5.8 81 28-121 31-112 (185)
275 3qp9_A Type I polyketide synth 28.9 2.2E+02 0.0075 22.6 9.0 85 22-111 256-350 (525)
276 4g0x_A Protein argonaute 1; MI 28.7 1E+02 0.0035 20.0 4.7 20 56-75 29-48 (147)
277 3qc0_A Sugar isomerase; TIM ba 28.3 1.1E+02 0.0039 21.1 5.3 80 31-114 21-107 (275)
278 3tqq_A Methionyl-tRNA formyltr 28.3 74 0.0025 23.7 4.4 74 26-111 11-88 (314)
279 1uqw_A Putative binding protei 28.0 1.8E+02 0.006 22.7 6.8 45 32-76 330-378 (509)
280 3uw2_A Phosphoglucomutase/phos 28.0 2E+02 0.0068 22.7 7.0 49 29-77 49-97 (485)
281 3qbe_A 3-dehydroquinate syntha 27.9 2E+02 0.0069 21.9 8.0 88 16-111 22-111 (368)
282 1jae_A Alpha-amylase; glycosid 27.6 44 0.0015 26.1 3.1 21 87-108 73-93 (471)
283 2b7e_A PRE-mRNA processing pro 27.5 5 0.00017 22.7 -1.7 25 118-142 17-42 (59)
284 3h5t_A Transcriptional regulat 27.4 1.4E+02 0.0049 21.7 5.9 60 44-111 70-136 (366)
285 4g0o_A Protein argonaute 5; MI 27.3 74 0.0025 20.5 3.8 54 56-111 29-83 (139)
286 3t66_A Nickel ABC transporter 27.1 1.4E+02 0.0049 23.2 6.0 46 31-76 305-364 (496)
287 4imr_A 3-oxoacyl-(acyl-carrier 26.8 1.7E+02 0.0058 20.7 9.6 80 24-113 40-119 (275)
288 1zhv_A Hypothetical protein AT 26.6 38 0.0013 22.1 2.2 61 38-99 58-119 (134)
289 2pju_A Propionate catabolism o 26.6 1.7E+02 0.0058 20.6 7.8 59 38-110 103-161 (225)
290 1m72_A Caspase-1; caspase, cys 26.4 1.9E+02 0.0063 21.0 9.1 61 43-110 32-104 (272)
291 3ry3_A Putative solute-binding 26.3 2E+02 0.007 22.6 6.9 46 31-76 334-394 (528)
292 1g94_A Alpha-amylase; beta-alp 26.3 46 0.0016 25.8 3.0 21 87-108 63-83 (448)
293 3e03_A Short chain dehydrogena 26.2 1.7E+02 0.0059 20.5 9.2 85 24-114 13-101 (274)
294 1rcu_A Conserved hypothetical 26.1 1.1E+02 0.0038 21.1 4.7 41 28-74 45-85 (195)
295 3ujp_A Mn transporter subunit; 26.0 1.4E+02 0.0046 22.1 5.4 45 64-110 202-246 (307)
296 3g13_A Putative conjugative tr 26.0 1.4E+02 0.0048 19.4 8.2 77 28-110 27-112 (169)
297 3k7p_A Ribose 5-phosphate isom 25.9 1.6E+02 0.0056 20.2 6.8 77 32-113 13-92 (179)
298 3zy2_A Putative GDP-fucose pro 25.8 85 0.0029 24.2 4.2 51 20-74 258-308 (362)
299 3pff_A ATP-citrate synthase; p 25.7 2E+02 0.0067 24.8 6.9 64 43-112 655-718 (829)
300 4edg_A DNA primase; catalytic 25.2 1E+02 0.0035 23.2 4.7 49 32-82 186-234 (329)
301 4gud_A Imidazole glycerol phos 25.1 56 0.0019 22.3 3.0 28 44-75 4-31 (211)
302 2noo_A NIKA, nickel-binding pe 24.5 1.4E+02 0.0047 23.3 5.5 46 31-76 313-374 (502)
303 3p94_A GDSL-like lipase; serin 24.3 82 0.0028 20.6 3.7 31 88-119 100-130 (204)
304 1xfi_A Unknown protein; struct 24.1 2.4E+02 0.0082 21.5 7.9 66 31-99 201-270 (367)
305 1xvl_A Mn transporter, MNTC pr 23.9 1.6E+02 0.0053 21.9 5.5 43 65-109 217-259 (321)
306 1dd9_A DNA primase, DNAG; topr 23.9 1.5E+02 0.0051 22.3 5.4 42 31-73 196-240 (338)
307 4em8_A Ribose 5-phosphate isom 23.6 1.7E+02 0.0057 19.5 5.4 62 49-113 12-74 (148)
308 3r1i_A Short-chain type dehydr 23.3 2E+02 0.0069 20.3 8.3 81 24-114 39-120 (276)
309 3kvo_A Hydroxysteroid dehydrog 23.0 2.3E+02 0.008 20.9 9.2 85 24-114 52-140 (346)
310 1jet_A OPPA, oligo-peptide bin 22.9 1.3E+02 0.0046 23.4 5.2 45 32-76 343-393 (517)
311 1zl0_A Hypothetical protein PA 22.4 2.4E+02 0.0083 20.9 6.6 44 31-74 35-84 (311)
312 1p5d_X PMM, phosphomannomutase 22.4 2.8E+02 0.0094 21.6 7.1 48 29-76 35-82 (463)
313 2wol_A ORF15, clavulanic acid 22.4 2.2E+02 0.0075 22.4 6.4 44 32-76 377-423 (562)
314 3ufx_B Succinyl-COA synthetase 22.3 2.3E+02 0.0079 21.7 6.3 65 38-109 237-307 (397)
315 3gi1_A LBP, laminin-binding pr 22.2 1.3E+02 0.0044 21.9 4.6 44 65-110 192-235 (286)
316 3r2j_A Alpha/beta-hydrolase-li 21.9 2.1E+02 0.0072 20.0 9.0 71 30-107 145-215 (227)
317 3sgw_A Ribose 5-phosphate isom 21.9 2E+02 0.0069 19.8 7.1 67 45-113 30-100 (184)
318 3q0i_A Methionyl-tRNA formyltr 21.9 1.5E+02 0.005 22.1 4.9 76 24-111 14-93 (318)
319 1bvy_F Protein (cytochrome P45 21.7 79 0.0027 21.6 3.2 42 31-73 10-53 (191)
320 3qyf_A Crispr-associated prote 21.3 2.7E+02 0.0092 21.0 6.5 84 44-136 94-187 (324)
321 3cin_A MYO-inositol-1-phosphat 21.2 1.5E+02 0.0051 23.1 4.9 60 19-81 191-251 (394)
322 1ccw_A Protein (glutamate muta 20.5 1.7E+02 0.0059 18.5 6.3 72 19-100 7-80 (137)
323 2o1e_A YCDH; alpha-beta protei 20.2 1.2E+02 0.0043 22.3 4.2 43 65-109 203-245 (312)
324 3maj_A DNA processing chain A; 20.1 62 0.0021 25.1 2.5 34 43-76 128-163 (382)
No 1
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.87 E-value=6.7e-22 Score=159.80 Aligned_cols=135 Identities=30% Similarity=0.520 Sum_probs=113.9
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
|||+++++.|+++.+||+||||.|++..|+.++++++++|||+||++|++|++||....+.|++++++.|+||++.+.++
T Consensus 156 Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~ 235 (496)
T 3ks9_A 156 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIY 235 (496)
T ss_dssp EESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEEC
Confidence 58899999999998899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCcchhhHHHHHHHHhcC-CCceEEEEeeE---------------------EeeeCCcchhh-----hhHHHHHHHh
Q psy12591 81 KDSGVAEETAYDDIVLKLLTK-PRARGLFKRLK---------------------LVKDSGVAEET-----AYDDIVLKLL 133 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~-~~arvii~~~~---------------------~~~~~g~~~~~-----~~~~~~~~~~ 133 (144)
... .+.+++.++++|++. ++++|||++.. ++..+||+... ....++|.++
T Consensus 236 ~~~---~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~k~~~i~s~~w~~~~~~~~~~~~~~~G~l~ 312 (496)
T 3ks9_A 236 SNA---GEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGIT 312 (496)
T ss_dssp TTC---CHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEE
T ss_pred CCC---CHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCCcEEEEEechhccccccccccccccCceEE
Confidence 543 378999999999952 68999998742 46677776532 2234566666
Q ss_pred cCccc
Q psy12591 134 TKPRA 138 (144)
Q Consensus 134 ~~~~~ 138 (144)
+.++.
T Consensus 313 ~~~~~ 317 (496)
T 3ks9_A 313 IKLQS 317 (496)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 55544
No 2
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=159.38 Aligned_cols=117 Identities=37% Similarity=0.588 Sum_probs=104.9
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
|||+++++.|+++..||+|||+.|++..|+.++++++++|||+||++|++|++||....+.|++++++.|+||++.+.++
T Consensus 144 Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~ 223 (479)
T 3sm9_A 144 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVG 223 (479)
T ss_dssp EESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred ECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcC
Confidence 58899999999998899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchhhHHHHH-HHHhcCCCceEEEEee-------------------EEeeeCCcch
Q psy12591 81 KDSGVAEETAYDDIV-LKLLTKPRARGLFKRL-------------------KLVKDSGVAE 121 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~-------------------~~~~~~g~~~ 121 (144)
... .+.+++.++ +.|+ +++++|||+++ .|+..+||+.
T Consensus 224 ~~~---~~~d~~~~l~~~i~-~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~~wI~s~~w~~ 280 (479)
T 3sm9_A 224 RSN---IRKSYDSVIRELLQ-KPNARVVVLFMRSDDSRELIAAASRANASFTWVASDGWGA 280 (479)
T ss_dssp C-----CHHHHHHHHHHHHT-CTTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTTTT
T ss_pred CCC---ChHHHHHHHHHHHh-cCCCeEEEEEcChHHHHHHHHHHHHhCCEEEEEEechhhc
Confidence 653 267899999 6677 78999999875 3677888865
No 3
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.87 E-value=1.4e-21 Score=159.56 Aligned_cols=133 Identities=34% Similarity=0.545 Sum_probs=112.3
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
|||+++++.|+++.+|||||||.|++..|+.++++++++|||+||++|++|++||....+.|++.+++.|+||++.+.++
T Consensus 145 Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~ 224 (555)
T 2e4u_A 145 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVG 224 (555)
T ss_dssp EESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred EeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeC
Confidence 57899999999988899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEee-------------------EEeeeCCcchhhh-----hHHHHHHHhcCc
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL-------------------KLVKDSGVAEETA-----YDDIVLKLLTKP 136 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~-------------------~~~~~~g~~~~~~-----~~~~~~~~~~~~ 136 (144)
... ...+++.++++|+.++++||||++. .++..++|+.... .+.++|.+.+.+
T Consensus 225 ~~~---~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~~~~~i~s~~~~~~~~~~~~~~~~~~G~l~~~~ 301 (555)
T 2e4u_A 225 RSN---IRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNASFTWVASDGWGAQESIVKGSEHVAYGAITLEL 301 (555)
T ss_dssp TTC---CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTTTTCGGGTTTCHHHHTTCEEEEE
T ss_pred CCC---ChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcCCeEEEEeccccccchhhccchhhcceEEEEEe
Confidence 643 2678999999997457899999874 2566777776432 224555555444
No 4
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.82 E-value=2.1e-21 Score=156.09 Aligned_cols=110 Identities=35% Similarity=0.653 Sum_probs=87.3
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhh-CceEEEEEecc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAK-YSICIAIKEKL 79 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~-~Gi~V~~~~~~ 79 (144)
|||+++++.|+++..||+|||+.|++..|+.++++++++|||+||++|++|++||....+.|.+.+++ .|+||++.+.+
T Consensus 145 Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i 224 (481)
T 3mq4_A 145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRI 224 (481)
T ss_dssp EESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCC
T ss_pred EccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEc
Confidence 58899999999998999999999999999999999999999999999999999999999999999885 79999999888
Q ss_pred cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.... ..+.++..++++|+.+++++|||++.
T Consensus 225 ~~~~~-~~~~d~~~~l~~i~~~s~a~vIi~~~ 255 (481)
T 3mq4_A 225 PQERK-DRTIDFDRIIKQLLDTPNSRAVVIFA 255 (481)
T ss_dssp CCC-------CCSHHHHCCCCC----CEEECC
T ss_pred CCCCc-cchHHHHHHHHHHHhcCCCEEEEEEE
Confidence 76531 01227888999987447899999874
No 5
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.82 E-value=1.9e-20 Score=146.03 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=93.5
Q ss_pred CcccCCCC-CCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhC--c--eEEEE
Q psy12591 1 VSFWSTSP-ELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY--S--ICIAI 75 (144)
Q Consensus 1 Is~~at~~-~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~--G--i~V~~ 75 (144)
|||+++++ .|+++.+||+||||.|+|..|+.++++++++|||+||++|++|+ . ..+.|.+.+++. | +|+.+
T Consensus 94 IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~---g~~~~~~~l~~~~~~~~ici~~ 169 (364)
T 3qel_B 94 LGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-P---GYQDFVNKIRSTIENSFVGWEL 169 (364)
T ss_dssp EEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-T---THHHHHHHHHHHHHTCSSCCEE
T ss_pred EEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-c---cHHHHHHHHHHHhhccccceEE
Confidence 57888888 89999899999999999999999999999999999999999974 3 334555555544 4 59988
Q ss_pred EecccCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCccc
Q psy12591 76 KEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRA 138 (144)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 138 (144)
...++...+ ..+++.++ ++|| ++++||||+++.. -....++..+.....+++.|
T Consensus 170 ~~~i~~~~~---~~~~~~~l~~~i~-~~~a~ViIv~~~~-----~~~~~ll~~a~~~g~~~~~y 224 (364)
T 3qel_B 170 EEVLLLDMS---LDDGDSKIQNQLK-KLQSPIILLYCTK-----EEATYIFEVANSVGLTGYGY 224 (364)
T ss_dssp EEEEEECTT---SCSSSCHHHHHHT-TCCCSEEEEESCH-----HHHHHHHHHHHTTTCSSTTC
T ss_pred EEEEccCCC---cccHHHHHHHHHH-ccCCcEEEEEcCH-----HHHHHHHHHHHHcCCCCCCe
Confidence 777665432 45677888 6888 7899999998741 12234455555555555533
No 6
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.82 E-value=4.1e-20 Score=146.18 Aligned_cols=105 Identities=14% Similarity=0.253 Sum_probs=94.5
Q ss_pred CcccCCCCCCcCCC-CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchH---HHHHHHHHhhhCceEEEEE
Q psy12591 1 VSFWSTSPELSNKQ-RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVK---AFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 1 Is~~at~~~ls~~~-~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~---~~~~~~~~l~~~Gi~V~~~ 76 (144)
||++++++.|+++. .||||||+.|++..++.++++++++|||+||++|++|++||+. ..+.|.+.+++.|+||+..
T Consensus 112 is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~ 191 (441)
T 1jdp_A 112 LSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIY 191 (441)
T ss_dssp EESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred EcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEE
Confidence 57889999999987 7999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 77 EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
+.++.+ +.+++.++++|+ +++||||+++.
T Consensus 192 ~~~~~~-----~~d~~~~l~~i~--~~~~vii~~~~ 220 (441)
T 1jdp_A 192 SFDETK-----DLDLEDIVRNIQ--ASERVVIMCAS 220 (441)
T ss_dssp EECTTS-----CCCHHHHHHHHH--HHCSEEEEESC
T ss_pred EecCCc-----ccCHHHHHHHhh--cCCcEEEEecC
Confidence 766543 347899999998 67999998864
No 7
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.81 E-value=1.3e-19 Score=141.08 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=88.5
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceE--------
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSIC-------- 72 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~-------- 72 (144)
||++++++.++++..||+|||+.|++..|+.++++++++|||+||++|++|++||.+..+.|++.+++.|+.
T Consensus 98 is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~ 177 (384)
T 3qek_A 98 IGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYEN 177 (384)
T ss_dssp EESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC-------------
T ss_pred EecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccc
Confidence 478888999999888999999999999999999999999999999999999999999999999999999973
Q ss_pred ---EEEE-------ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 73 ---IAIK-------EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 73 ---V~~~-------~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
+.+. +.++... ..+.|++.+|++|| .+++|+||+++.
T Consensus 178 ~~~v~~~~~~~~~~~~v~~~~--~~~~d~~~~l~~i~-~~~~~vii~~~~ 224 (384)
T 3qek_A 178 LDQLSYDNKRGPKADKVLQFE--PGTKNLTALLLEAK-ELEARVIILSAS 224 (384)
T ss_dssp -CCSCCCCCCCCEEEEEEEEC--TTCSCCHHHHHHHH-TSSCCEEEEECC
T ss_pred cceeeeccccCcccceecccC--CchhhHHHHHHHHH-hcCCcEEEEECC
Confidence 3332 2222111 02568999999999 789999999874
No 8
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.78 E-value=8.7e-19 Score=138.16 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=102.4
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
||++++++.|+++..||||||+.|++..++.++++++++|||++|++|+++++||....+.|.+.+++.|+||+..+.++
T Consensus 113 is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~ 192 (433)
T 4f11_A 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFS 192 (433)
T ss_dssp EESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEES
T ss_pred EEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccC
Confidence 47888999999987899999999999999999999999999999999999999999999999999999999999988885
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcC
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTK 135 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~ 135 (144)
. |++.+|++|| .+++++||+++. +-+...++.++.....++
T Consensus 193 ~--------d~~~~l~~i~-~~~~~vii~~~~-----~~~~~~~~~~a~~~g~~~ 233 (433)
T 4f11_A 193 N--------DPCTSVKKLK-GNDVRIILGQFD-----QNMAAKVFCCAYEENMYG 233 (433)
T ss_dssp S--------CCHHHHHHHH-HTTCCEEEEECC-----HHHHHHHHHHHHHTTCCS
T ss_pred c--------CHHHHHHHHh-hCCCeEEEEeCc-----HHHHHHHHHHHHHcCCCC
Confidence 3 4678999999 689999999874 223334455544444443
No 9
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.77 E-value=6.1e-19 Score=138.83 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=89.9
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEE------EEeCCcchHHHHHHHHHhhh-CceEE
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSII------YEESNYGVKAFEELEVLLAK-YSICI 73 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii------~~~~~~g~~~~~~~~~~l~~-~Gi~V 73 (144)
||++++++.|+++..||||||+.|++..++.++++++++|+|+||++| +++++|| ...+.+.+.+.+ .|+||
T Consensus 105 is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v 183 (435)
T 1dp4_A 105 LTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNITV 183 (435)
T ss_dssp EESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEE
T ss_pred EcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEE
Confidence 578899999999878999999999999999999999999999999999 6777888 555677888887 99999
Q ss_pred EEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 74 AIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
+..+.++.+ ..+++.+|++|| . ++|+||+++.
T Consensus 184 ~~~~~~~~~-----~~d~~~~l~~i~-~-~~~viv~~~~ 215 (435)
T 1dp4_A 184 NHQEFVEGD-----PDHYPKLLRAVR-R-KGRVIYICSS 215 (435)
T ss_dssp EEEEECTTC-----GGGHHHHHHHHH-H-HCSEEEEESC
T ss_pred EEEEEecCc-----hhhHHHHHHHHH-h-hCceEEEecC
Confidence 988765332 578999999999 5 8999999874
No 10
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.72 E-value=2.1e-17 Score=128.80 Aligned_cols=102 Identities=15% Similarity=0.305 Sum_probs=90.6
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
|+++++++.++++ .+||||+.|++..++.++++++++|||++|++++ +++||....+.+.+.+++.|+||+..+ ++
T Consensus 99 is~~~~~~~l~~~--~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~-~~ 174 (395)
T 3h6g_A 99 IQTRWKHQVSDNK--DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQ-LP 174 (395)
T ss_dssp EECSCCCCCTTCC--CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHTGGGTSSCEEEEEE-CC
T ss_pred EeeccCccccccc--CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHHhhhcCCceEEEEE-eC
Confidence 4678888888875 6789999999999999999999999999999997 678999999999999999999998875 76
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
.+ +.||+.+|++|| .+++++|++++.
T Consensus 175 ~~-----~~d~~~~l~~i~-~~~~~vi~~~~~ 200 (395)
T 3h6g_A 175 AD-----TKDAKPLLKEMK-RGKEFHVIFDCS 200 (395)
T ss_dssp SS-----GGGGHHHHHHHH-HTTCCEEEEESC
T ss_pred CC-----chhHHHHHHHHh-hcCCeEEEEECC
Confidence 55 578999999999 688999998864
No 11
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.63 E-value=4.2e-16 Score=121.48 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=78.4
Q ss_pred cccCCCCCCcCCCCCCce--EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591 2 SFWSTSPELSNKQRFEYF--TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKL 79 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~f--fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~ 79 (144)
|++++. +++..||+| ||+.|++..|+.++++++++|||++|++|+++++||..+.+.+ +.+.+.|+||.... +
T Consensus 100 s~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~ 174 (393)
T 3om0_A 100 KVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV-RGFLISKETLSVRM-L 174 (393)
T ss_dssp ECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-HHHHHSSSCEEEEE-C
T ss_pred eccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-HhhhccCCeEEEEe-c
Confidence 455543 445579999 9999999999999999999999999999999999998876666 45778899997654 4
Q ss_pred cCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
+ + +.|++.+|++|| .+++++||+++.
T Consensus 175 ~-~-----~~d~~~~l~~i~-~~~~~vii~~~~ 200 (393)
T 3om0_A 175 D-D-----SRDPTPLLKEIR-DDKVSTIIIDAN 200 (393)
T ss_dssp C-------CCCSHHHHHHHH-HHTCSEEEEESC
T ss_pred C-C-----CCCHHHHHHHHH-hcCCeEEEEECC
Confidence 2 2 468999999999 688999998764
No 12
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.60 E-value=3.5e-15 Score=116.00 Aligned_cols=92 Identities=11% Similarity=0.228 Sum_probs=63.9
Q ss_pred CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591 15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI 94 (144)
Q Consensus 15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~ 94 (144)
.++|+||+.|+ |+.++++++++|||++|++|+ |++||....+.|.+.+++.|+||+..+.++.... ..+.||+.+
T Consensus 97 ~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~d~~~~ 171 (376)
T 3hsy_A 97 THPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND-KKDETYRSL 171 (376)
T ss_dssp CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC------------
T ss_pred cCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhhhcCCeEEEEEecccccc-ccchhHHHH
Confidence 47889999876 899999999999999999999 8999999999999999999999998876643210 025789999
Q ss_pred HHHHhcCCCceEEEEeeE
Q psy12591 95 VLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 95 l~~lk~~~~arvii~~~~ 112 (144)
|++|| ..++++||+++.
T Consensus 172 l~~i~-~~~~~vii~~~~ 188 (376)
T 3hsy_A 172 FQDLE-LKKERRVILDCE 188 (376)
T ss_dssp ----------CEEEEESC
T ss_pred HHHHh-hCCCeEEEEECC
Confidence 99999 688999998764
No 13
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.58 E-value=1.6e-14 Score=113.02 Aligned_cols=88 Identities=7% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591 16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV 95 (144)
Q Consensus 16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l 95 (144)
.+|.||+.|+ |+.++++++++|||+||++|+ |++||....+.|.+.+++.|+||+..+.++... +.||+.+|
T Consensus 107 ~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~----~~d~~~~l 178 (389)
T 3o21_A 107 VQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIKD----VQEFRRII 178 (389)
T ss_dssp CSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCC----THHHHHHH
T ss_pred CceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCC----cHHHHHHH
Confidence 4566777776 899999999999999999999 889999999999999999999999988775432 46899999
Q ss_pred HHHhcCCCceEEEEeeE
Q psy12591 96 LKLLTKPRARGLFKRLK 112 (144)
Q Consensus 96 ~~lk~~~~arvii~~~~ 112 (144)
++|| .+++++||+++.
T Consensus 179 ~~ik-~~~~~vii~~~~ 194 (389)
T 3o21_A 179 EEMD-RRQEKRYLIDCE 194 (389)
T ss_dssp HHHH-TTTCCEEEEESC
T ss_pred HHHH-hCCCeEEEEECC
Confidence 9999 688999998753
No 14
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.57 E-value=1.5e-14 Score=122.00 Aligned_cols=112 Identities=10% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591 14 QRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD 93 (144)
Q Consensus 14 ~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~ 93 (144)
..+||+||+.|+ |+.++++++++|||+||++|+ +++||....+.+.+.+++.|+||+..+.++.+.. .++.|++.
T Consensus 96 ~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~d~~~ 170 (823)
T 3kg2_A 96 GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND-KKDETYRS 170 (823)
T ss_dssp SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSS-STTTTTTT
T ss_pred CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCC-ccchhHHH
Confidence 358999999998 889999999999999999999 7889999999999999999999999988766521 12578999
Q ss_pred HHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCc
Q psy12591 94 IVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKP 136 (144)
Q Consensus 94 ~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 136 (144)
+|++|| .+++|+||+++. +-+...++.++.....+++
T Consensus 171 ~l~~i~-~~~~~vii~~~~-----~~~~~~~~~~a~~~g~~~~ 207 (823)
T 3kg2_A 171 LFQDLE-LKKERRVILDCE-----RDKVNDIVDQVITIGKHVK 207 (823)
T ss_dssp HHHHTT-TTTCCEEEEECC-----HHHHHHHHHHHHHHTTTBT
T ss_pred HHHHHH-hcCCeEEEEECC-----HHHHHHHHHHHHHcCcCCC
Confidence 999999 788999999874 2222344555554444444
No 15
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.56 E-value=1.4e-14 Score=112.77 Aligned_cols=87 Identities=16% Similarity=0.285 Sum_probs=76.9
Q ss_pred CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591 16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV 95 (144)
Q Consensus 16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l 95 (144)
.+|+||+.|+ |+.++++++++|||++|++|+ +++||....+.|.+.+++.|+||+..+.++.+ +.||+.+|
T Consensus 105 ~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-----~~d~~~~l 175 (384)
T 3saj_A 105 NQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTTT-----EEGYRMLF 175 (384)
T ss_dssp CTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEEGGGCC-----HHHHHHTT
T ss_pred cCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHHHHhhhcCceEEEEEeccCC-----chhHHHHH
Confidence 5678888877 899999999999999999999 67999999999999999999999988855433 67899999
Q ss_pred HHHhcCCCceEEEEeeE
Q psy12591 96 LKLLTKPRARGLFKRLK 112 (144)
Q Consensus 96 ~~lk~~~~arvii~~~~ 112 (144)
++|| .+++++||+++.
T Consensus 176 ~~ik-~~~~~vii~~~~ 191 (384)
T 3saj_A 176 QDLE-KKKERLVVVDCE 191 (384)
T ss_dssp TTCC-SCSEEEEEEECC
T ss_pred HHHh-ccCCcEEEEEcC
Confidence 9999 689999998763
No 16
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.56 E-value=1.2e-14 Score=112.17 Aligned_cols=117 Identities=9% Similarity=0.075 Sum_probs=85.5
Q ss_pred cCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCC
Q psy12591 4 WSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDS 83 (144)
Q Consensus 4 ~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~ 83 (144)
.+.++.++++..||+++|+.+ +.++++++++|+|+||++|++++.++. ..+.+.+.+.+.|+||+..+.++..
T Consensus 97 is~~~~~~~~~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~d~~~~-~~~~~~~~~~~~g~~v~~~~~~~~~- 169 (389)
T 4gpa_A 97 ITPSFPTEGESQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDTDRGYS-ILQAIMEKAGQNGWHVSAICVENFN- 169 (389)
T ss_dssp EECSCCCSSCCSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECSTTCSH-HHHHHHHHHHTTTCEEEEEECTTCC-
T ss_pred eeccccccccccCCccccCCH-----HHHHHHHHHHcCCcEEEEEEecchhhH-HHHHHHHHHHhcCceEEEEeecCCc-
Confidence 344455566666777777543 468999999999999999998877765 4567888999999999988776554
Q ss_pred CCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCcc
Q psy12591 84 GVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPR 137 (144)
Q Consensus 84 ~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 137 (144)
+.+++.+|+++| .+++++||+++. .-....++.++.....+++.
T Consensus 170 ----~~d~~~~l~~i~-~~~~~vIv~~~~-----~~~~~~il~~a~~~g~~~~~ 213 (389)
T 4gpa_A 170 ----DVSYRQLLEELD-RRQEKKFVIDCE-----IERLQNILEQIVSVGKHVKG 213 (389)
T ss_dssp ----HHHHHHHHHHHH-HHTCCEEEEECC-----HHHHHHHHHHHHHHTCSBTT
T ss_pred ----chhHHHHHHHhh-ccCCcEEEEEec-----hhHHHHHHHHHHHhCCCCCc
Confidence 689999999999 688999998764 22223444444444444443
No 17
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.53 E-value=2.5e-14 Score=110.73 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=92.7
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
|+++++++.++++..+|++||+.|++..++.++++++.++||++|++|+.+++||....+.|++.+++.|++|+..+.++
T Consensus 101 i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~ 180 (379)
T 3n0w_A 101 FITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFP 180 (379)
T ss_dssp EECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred EEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence 35667778888766799999999999999999999998999999999999999999999999999999999999888887
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+ ..|++.++++|+ .+++++|+++.
T Consensus 181 ~~-----~~d~~~~l~~i~-~~~~d~v~~~~ 205 (379)
T 3n0w_A 181 FE-----TQDFSSYLLQAK-ASGAQLIVSTS 205 (379)
T ss_dssp TT-----CCCCHHHHHHHH-HHTCSEEEECC
T ss_pred CC-----CCCHHHHHHHHH-HCCCCEEEEec
Confidence 65 357899999999 67899988764
No 18
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.53 E-value=2.2e-14 Score=111.14 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=92.6
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
|+++++++.++.. .||+||+.|++..++.+++.+++..+|+++++++.|++||....+.|++.+++.|++|+..+.++
T Consensus 100 i~~~a~~~~~~~~--~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~ 177 (371)
T 4f06_A 100 VVMNAATSSITEK--SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMP 177 (371)
T ss_dssp EESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cccccccchhccc--CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecC
Confidence 3567778888764 68999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+ +.||+.+|++|| ..++++|+++.
T Consensus 178 ~~-----~~d~~~~l~~i~-~~~pd~v~~~~ 202 (371)
T 4f06_A 178 LS-----TTDFGPIMQRIK-NSGADMIFTFL 202 (371)
T ss_dssp TT-----CCCCHHHHHHHH-HHTCSEEEEEC
T ss_pred cc-----cccHHHHHHHHH-hcCCCEEEEEe
Confidence 76 468999999999 68899887654
No 19
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.53 E-value=5e-14 Score=108.73 Aligned_cols=105 Identities=11% Similarity=0.024 Sum_probs=92.6
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
|+++++++.++++..+|++||+.|++..++.++++++.++||++|++|+.+++||....+.|++.+++.|++|+..+.++
T Consensus 99 i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~ 178 (375)
T 3i09_A 99 INIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHP 178 (375)
T ss_dssp EECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCC
Confidence 35567778888776799999999999999999999998999999999999999999999999999999999999888887
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+ ..|++.++++|+ ..++++|+++.
T Consensus 179 ~~-----~~d~~~~l~~i~-~~~~d~v~~~~ 203 (375)
T 3i09_A 179 LS-----ASDFSSFLLQAQ-SSKAQILGLAN 203 (375)
T ss_dssp TT-----CSCCHHHHHHHH-HTCCSEEEEEC
T ss_pred CC-----CccHHHHHHHHH-hCCCCEEEEec
Confidence 65 457899999999 67899988764
No 20
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.52 E-value=4.9e-14 Score=109.35 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=91.6
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhC--ceEEEEEecc
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY--SICIAIKEKL 79 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~--Gi~V~~~~~~ 79 (144)
++.++++.+++...+|++||+.|++..++.++++++.+++|++|++|+.+++||+...+.|++.+++. |++++..+.+
T Consensus 102 ~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~ 181 (387)
T 3i45_A 102 ASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWP 181 (387)
T ss_dssp ECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred ecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecC
Confidence 45666777776667999999999999999999999999999999999999999999999999999998 9999888877
Q ss_pred cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.+ ..+++.++++|+ ..++++|++++
T Consensus 182 ~~~-----~~d~~~~~~~i~-~~~~d~v~~~~ 207 (387)
T 3i45_A 182 ALY-----KLDAGPTVQALQ-QAEPEGLFNVL 207 (387)
T ss_dssp CTT-----CCCHHHHHHHHH-HTCCSEEEECC
T ss_pred CCC-----CcCHHHHHHHHH-hCCCCEEEEcC
Confidence 765 458999999999 67899988875
No 21
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.47 E-value=1.3e-13 Score=108.00 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=83.7
Q ss_pred CCCCCceEEecCCchHHHHHHHHHHHhC--------CCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC
Q psy12591 13 KQRFEYFTRTIPSDHHQVKAMVEIVKKL--------GWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG 84 (144)
Q Consensus 13 ~~~~p~ffRt~p~d~~~~~a~~~ll~~f--------~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~ 84 (144)
...|+++||+.|++..++.+++++++++ +|++|++|+++++||+...+.|++.+++.|++|+..+.++.+
T Consensus 127 ~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~-- 204 (419)
T 3h5l_A 127 PDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP-- 204 (419)
T ss_dssp TTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS--
T ss_pred cccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC--
Confidence 3468999999999999999999999876 899999999999999999999999999999999998888765
Q ss_pred CcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 85 VAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 85 ~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
..|++.++++|+ ..++++|++.
T Consensus 205 ---~~d~~~~l~~i~-~~~~d~v~~~ 226 (419)
T 3h5l_A 205 ---VSDWGPTLAKLR-ADPPAVIVVT 226 (419)
T ss_dssp ---CSCCHHHHHHHH-HSCCSEEEEC
T ss_pred ---CccHHHHHHHHH-hcCCCEEEEc
Confidence 468999999999 6789998875
No 22
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.46 E-value=8.9e-14 Score=107.63 Aligned_cols=102 Identities=13% Similarity=0.172 Sum_probs=88.9
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK 81 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~ 81 (144)
++.++++.++++..+||+||+.|++..++.+++.++++++| ++++|+.+++||....+.|++.+++.|++|+..+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~ 180 (374)
T 3n0x_A 102 VEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPT 180 (374)
T ss_dssp ECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECT
T ss_pred EcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCC
Confidence 34566777887766899999999999999999988889998 79999999999999999999999999999999888876
Q ss_pred CCCCcchhhHHHHHHHHhcCCC-----ceEEEEe
Q psy12591 82 DSGVAEETAYDDIVLKLLTKPR-----ARGLFKR 110 (144)
Q Consensus 82 ~~~~~~~~~~~~~l~~lk~~~~-----arvii~~ 110 (144)
+ ..||+.++++|+ ..+ +++|++.
T Consensus 181 ~-----~~d~~~~l~~i~-~~~~~~~~~d~v~~~ 208 (374)
T 3n0x_A 181 T-----TTDFTAVGQRLF-DALKDKPGKKIIWVI 208 (374)
T ss_dssp T-----CCCCHHHHHHHH-HHHTTCSSEEEEEEC
T ss_pred C-----CccHHHHHHHHH-hcCCCCCCCCEEEEE
Confidence 5 468999999999 566 8888776
No 23
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.46 E-value=3.6e-13 Score=103.35 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=88.5
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK 81 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~ 81 (144)
+++++++.++++ +|++||+.|++..++.++++++.++||++|++|+.++.+|....+.|.+.+++.|++++..+.++.
T Consensus 101 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~ 178 (368)
T 4eyg_A 101 VMAAGTSIITER--SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPL 178 (368)
T ss_dssp ESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECS
T ss_pred eccCCChhhccC--CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 455556666654 899999999999999999999999999999999999999999999999999999999988887776
Q ss_pred CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+ ..++..++++|+ ..++++|++++
T Consensus 179 ~-----~~d~~~~~~~l~-~~~~d~v~~~~ 202 (368)
T 4eyg_A 179 A-----NPDFAPFLQRMK-DAKPDAMFVFV 202 (368)
T ss_dssp S-----SCCCHHHHHHHH-HHCCSEEEEEC
T ss_pred C-----CCcHHHHHHHHH-hcCCCEEEEec
Confidence 5 357889999999 57789998854
No 24
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.43 E-value=6.7e-13 Score=102.05 Aligned_cols=104 Identities=6% Similarity=-0.021 Sum_probs=90.2
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK 81 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~ 81 (144)
++.++++.++++..+|++||+.|++..++..+++++.++||++|++|+.++.+|....+.+++.+++.|++++..+.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 190 (375)
T 4evq_A 111 VPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAF 190 (375)
T ss_dssp ESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred ecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 45666777877766999999999999999999999999999999999999999999999999999999999988777765
Q ss_pred CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+ ..++...+++|+ ..++++|++++
T Consensus 191 ~-----~~d~~~~~~~l~-~~~~dai~~~~ 214 (375)
T 4evq_A 191 P-----DVEFQSALAEIA-SLKPDCVYAFF 214 (375)
T ss_dssp T-----CCCCHHHHHHHH-HHCCSEEEEEC
T ss_pred C-----CccHHHHHHHHH-hcCCCEEEEec
Confidence 5 357888999998 56788888854
No 25
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.39 E-value=6.1e-13 Score=101.74 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=87.7
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHH-HHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEI-VKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~l-l~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
++.++++.++++ .+|++||+.|++..++.+++++ ++++||++|++|+.+++||....+.+++.+++.|++++..+.++
T Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~ 176 (356)
T 3ipc_A 98 TPAATNPVFTER-GLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVN 176 (356)
T ss_dssp ESSCCCGGGGSS-CCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred ecCCCCcHhhcC-CCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeC
Confidence 456667777765 4899999999999999999995 56789999999999999999999999999999999998777776
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+ ..++...+++|+ ..++++|+++.
T Consensus 177 ~~-----~~d~~~~~~~l~-~~~~d~v~~~~ 201 (356)
T 3ipc_A 177 VG-----DKDFSALISKMK-EAGVSIIYWGG 201 (356)
T ss_dssp TT-----CCCCHHHHHHHH-HTTCCEEEEES
T ss_pred CC-----CCCHHHHHHHHH-hcCCCEEEEcc
Confidence 54 457889999998 57889888764
No 26
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.37 E-value=7.1e-13 Score=101.87 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=87.1
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK 81 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~ 81 (144)
++.++++.+++ +|++||+.|++..++..+++++..+||++|++|+.+++||....+.+++.+++.|+++...+.++.
T Consensus 104 ~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~ 180 (364)
T 3lop_A 104 GPATGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPR 180 (364)
T ss_dssp SCSCCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECT
T ss_pred EcccCcHhhcc---CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence 44555555654 899999999999999999999999999999999999999999999999999999999987777765
Q ss_pred CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+ ..++..++++|+ ..++++|+++.
T Consensus 181 ~-----~~d~~~~~~~l~-~~~~d~v~~~~ 204 (364)
T 3lop_A 181 N-----TANVGPAVDKLL-AADVQAIFLGA 204 (364)
T ss_dssp T-----SCCCHHHHHHHH-HSCCSEEEEES
T ss_pred C-----CccHHHHHHHHH-hCCCCEEEEec
Confidence 5 457889999999 57889988864
No 27
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.37 E-value=2e-12 Score=99.30 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=85.4
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEE-eCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYE-ESNYGVKAFEELEVLLAKYSICIAIKEKL 79 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~-~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~ 79 (144)
++.++++.+++ .+|++||+.|++..++.++++++ +++||++|++|+. +++||....+.|.+.+++.|+++.... +
T Consensus 110 ~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~ 186 (366)
T 3td9_A 110 TPASTNPLVTQ--GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-F 186 (366)
T ss_dssp ESSCCCGGGTT--TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-E
T ss_pred ecCCCCccccC--CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-e
Confidence 45556666654 48999999999999999999988 6689999999987 678999999999999999999998887 7
Q ss_pred cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.+ ..++...+++|+ ..++++|++..
T Consensus 187 ~~~-----~~d~~~~~~~l~-~~~~d~v~~~~ 212 (366)
T 3td9_A 187 RSG-----DQDFSAQLSVAM-SFNPDAIYITG 212 (366)
T ss_dssp CTT-----CCCCHHHHHHHH-HTCCSEEEECS
T ss_pred CCC-----CccHHHHHHHHH-hcCCCEEEEcc
Confidence 655 457889999999 67899998853
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.35 E-value=3e-12 Score=99.46 Aligned_cols=91 Identities=10% Similarity=0.097 Sum_probs=82.2
Q ss_pred CCCceEEecCCchHHHHHHHHHHHh-CCCcEEEEEEE-eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHH
Q psy12591 15 RFEYFTRTIPSDHHQVKAMVEIVKK-LGWSYVSIIYE-ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYD 92 (144)
Q Consensus 15 ~~p~ffRt~p~d~~~~~a~~~ll~~-f~W~~Vaii~~-~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~ 92 (144)
.+|++||+.|++..++..+++++.. +||++|++|+. +++||....+.+++.+++.|++++..+.++.+ ..++.
T Consensus 113 ~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-----~~d~~ 187 (391)
T 3eaf_A 113 VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR-----ATEAD 187 (391)
T ss_dssp TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT-----CCHHH
T ss_pred CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC-----CcCHH
Confidence 4899999999999999999998866 79999999999 99999999999999999999999988888765 46899
Q ss_pred HHHHH--HhcCCCceEEEEee
Q psy12591 93 DIVLK--LLTKPRARGLFKRL 111 (144)
Q Consensus 93 ~~l~~--lk~~~~arvii~~~ 111 (144)
.++++ |+ ..++++|++..
T Consensus 188 ~~~~~~~l~-~~~~dav~~~~ 207 (391)
T 3eaf_A 188 AERIAREML-AADPDYVWCGN 207 (391)
T ss_dssp HHHHHHHHH-TTCCSEEEECS
T ss_pred HHHHHHHHH-HcCCCEEEEec
Confidence 99999 99 68899998865
No 29
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.34 E-value=2.4e-12 Score=99.01 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=87.5
Q ss_pred cccCCCCCCcC-CCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 2 SFWSTSPELSN-KQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 2 s~~at~~~ls~-~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
++.++++.+++ ...+|++||+.|++..++..+++++..+||++|++|+.++.||....+.+++.+++.|++++..+.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~ 197 (386)
T 3sg0_A 118 TMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYA 197 (386)
T ss_dssp ECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEEC
T ss_pred EecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeC
Confidence 34445555553 34589999999999999999999999999999999999999999999999999999999998777676
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+ ..++...+++++ ..++++|+++.
T Consensus 198 ~~-----~~d~~~~~~~~~-~~~~dav~~~~ 222 (386)
T 3sg0_A 198 RS-----DASVTGQVLKII-ATKPDAVFIAS 222 (386)
T ss_dssp TT-----CSCCHHHHHHHH-HTCCSEEEEEC
T ss_pred CC-----CCcHHHHHHHHH-hcCCCEEEEec
Confidence 55 357888999998 57889888765
No 30
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.34 E-value=3.1e-12 Score=97.18 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=85.4
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV 80 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~ 80 (144)
++.++++.++++. +|++||+.|++..++..+++++ +++||++|++|+.++.||....+.|++.+++.|+++...+.++
T Consensus 98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~ 176 (346)
T 1usg_A 98 SPGATNPELTQRG-YQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGIT 176 (346)
T ss_dssp ECCCCCGGGGSSC-CSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eeCCCChHHhcCC-CCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence 4455566676653 8999999999999999999987 5689999999999888999999999999999999998777675
Q ss_pred CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+ ..++...+++|+ ..++++|+++.
T Consensus 177 ~~-----~~d~~~~~~~l~-~~~~d~i~~~~ 201 (346)
T 1usg_A 177 AG-----EKDFSALIARLK-KENIDFVYYGG 201 (346)
T ss_dssp TT-----CCCCHHHHHHHH-HTTCCEEEEES
T ss_pred CC-----CcCHHHHHHHHH-hcCCCEEEEcC
Confidence 54 346778899998 56788888764
No 31
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.33 E-value=2.7e-12 Score=99.51 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=84.2
Q ss_pred CCCcCCCCCCceEEecCCchHHHHHHHHHHHh-CCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCc
Q psy12591 8 PELSNKQRFEYFTRTIPSDHHQVKAMVEIVKK-LGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVA 86 (144)
Q Consensus 8 ~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~-f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~ 86 (144)
+.+.+...+|++||+.|++..++..+++++.. +||++|++|+.+++||....+.+++.+++.|++++..+.++.+
T Consensus 108 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~---- 183 (392)
T 3lkb_A 108 IELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG---- 183 (392)
T ss_dssp GGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT----
T ss_pred hhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC----
Confidence 33555456899999999999999999998765 7999999999999999999999999999999999888877665
Q ss_pred chhhHHHHHHHHhcCCCceEEEEee
Q psy12591 87 EETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 87 ~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
..+++.++++|+ ..++++|+++.
T Consensus 184 -~~d~~~~~~~l~-~~~~dav~~~~ 206 (392)
T 3lkb_A 184 -NLDNTALLKRFE-QAGVEYVVHQN 206 (392)
T ss_dssp -CCCCHHHHHHHH-HTTCCEEEEES
T ss_pred -CcCHHHHHHHHH-hcCCCEEEEec
Confidence 457889999999 57899988754
No 32
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.30 E-value=9e-12 Score=95.27 Aligned_cols=102 Identities=11% Similarity=0.215 Sum_probs=86.4
Q ss_pred cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK 81 (144)
Q Consensus 2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~ 81 (144)
++.++++.+++.. |++||+.|++..++..+++++...||++|++|+.++.+|....+.+++.+++.|+++.....++.
T Consensus 101 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~ 178 (358)
T 3hut_A 101 SPTAAHPDYIKIS--PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPP 178 (358)
T ss_dssp ESSCCCGGGTTSC--TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred ecCCCCcccccCC--CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 3455666676543 99999999999999999999888899999999999999999999999999999999988777765
Q ss_pred CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+ ..++...+++|+ ..++++|+++.
T Consensus 179 ~-----~~~~~~~~~~l~-~~~~d~i~~~~ 202 (358)
T 3hut_A 179 G-----NRRFDDVIDEIE-DEAPQAIYLAM 202 (358)
T ss_dssp T-----CCCCHHHHHHHH-HHCCSEEEEES
T ss_pred C-----CccHHHHHHHHH-hcCCCEEEEcc
Confidence 4 457888999998 56788888764
No 33
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.25 E-value=2.6e-11 Score=92.31 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=81.5
Q ss_pred CCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591 14 QRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD 93 (144)
Q Consensus 14 ~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~ 93 (144)
..+|++||+.|++..++..+++++.++||++|++|+.++.||....+.+++.+++.|++++..+.++.+ ..++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-----~~~~~~ 181 (362)
T 3snr_A 107 ERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP-----DTSVAG 181 (362)
T ss_dssp TTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-----CSCCHH
T ss_pred CCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC-----CCCHHH
Confidence 358999999999999999999999999999999999999999999999999999999999887777655 357888
Q ss_pred HHHHHhcCCCceEEEEee
Q psy12591 94 IVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 94 ~l~~lk~~~~arvii~~~ 111 (144)
.+++|+ ..++++|+++.
T Consensus 182 ~~~~l~-~~~~dav~~~~ 198 (362)
T 3snr_A 182 QALKLV-AANPDAILVGA 198 (362)
T ss_dssp HHHHHH-HHCCSEEEEEC
T ss_pred HHHHHH-hcCCCEEEEec
Confidence 899998 56788888764
No 34
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.09 E-value=4.9e-10 Score=85.59 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=78.2
Q ss_pred CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC-CcEEEEEEEe-CCcchHHHHHHHHHhhhCceEEEEEec
Q psy12591 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG-WSYVSIIYEE-SNYGVKAFEELEVLLAKYSICIAIKEK 78 (144)
Q Consensus 1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~-W~~Vaii~~~-~~~g~~~~~~~~~~l~~~Gi~V~~~~~ 78 (144)
|+++++++.+++. ++|+||+.|++..++.+++.++...+ +++++++..+ ++||.+..+.+.+. .|++++..+.
T Consensus 103 i~~~~~~~~l~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~---~g~~vv~~~~ 177 (353)
T 4gnr_A 103 ISPSATQDGLTKG--QDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRES---YKGEIVADET 177 (353)
T ss_dssp EESSCCCTTTTTT--CTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHHHH---CCSEEEEEEE
T ss_pred EeecccccccccC--CccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHHHH---cCCEEEEEEe
Confidence 4667778888753 78999999999999999999886554 5555555554 45888877776654 4788988888
Q ss_pred ccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 79 LVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
++.+ +.||+.++++|| ..++++|++..
T Consensus 178 ~~~~-----~~d~~~~l~~i~-~~~~d~v~~~~ 204 (353)
T 4gnr_A 178 FVAG-----DTDFQAALTKMK-GKDFDAIVVPG 204 (353)
T ss_dssp ECTT-----CCCCHHHHHHHH-TSCCSEEECCS
T ss_pred eCCC-----CCCHHHHHHHHH-hcCCCEEEEec
Confidence 8876 468999999999 78999998764
No 35
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=98.99 E-value=4.8e-09 Score=81.11 Aligned_cols=93 Identities=10% Similarity=0.036 Sum_probs=78.8
Q ss_pred CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591 15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI 94 (144)
Q Consensus 15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~ 94 (144)
.+|++||+.+++..++..+++++...+|++|++|+.++.++....+.|++.+++.|+++...+.++... ...+++..
T Consensus 113 ~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~---~~~d~~~~ 189 (385)
T 1pea_A 113 YSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYP---SDDDLQRA 189 (385)
T ss_dssp CCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSC---CHHHHHHH
T ss_pred CCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCC---CcchHHHH
Confidence 368999999999999999999998889999999999888999999999999999999988766565421 26789999
Q ss_pred HHHHhcCCCceEEEEee
Q psy12591 95 VLKLLTKPRARGLFKRL 111 (144)
Q Consensus 95 l~~lk~~~~arvii~~~ 111 (144)
+++|+ ..++++|++..
T Consensus 190 ~~~l~-~~~pdaI~~~~ 205 (385)
T 1pea_A 190 VERIY-QARADVVFSTV 205 (385)
T ss_dssp HHHHH-HHTCSEEEEEC
T ss_pred HHHHH-HCCCCEEEEec
Confidence 99998 46788887754
No 36
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=98.82 E-value=9.2e-09 Score=78.29 Aligned_cols=89 Identities=8% Similarity=-0.048 Sum_probs=77.2
Q ss_pred CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591 15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI 94 (144)
Q Consensus 15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~ 94 (144)
..|++||+.+++..++..+++++...|++++++++.+++||+...+.|++.+++.|++|+..+.++.. +....
T Consensus 97 ~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~-------~~~~~ 169 (327)
T 3ckm_A 97 AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP-------ADVTY 169 (327)
T ss_dssp CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST-------THHHH
T ss_pred cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCC-------chhhH
Confidence 36799999999999999999999888999999999999999999999999999999999988888654 23356
Q ss_pred HHHHhcCCCceEEEEee
Q psy12591 95 VLKLLTKPRARGLFKRL 111 (144)
Q Consensus 95 l~~lk~~~~arvii~~~ 111 (144)
+.+++ ..++++|++..
T Consensus 170 ~~~~~-~~~~dai~~~~ 185 (327)
T 3ckm_A 170 FVQEN-NSNTTALYAVA 185 (327)
T ss_dssp HHHHS-CTTCCEEEECC
T ss_pred HHHHh-ccCCcEEEEEc
Confidence 66777 67888888754
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=98.78 E-value=4.3e-09 Score=80.87 Aligned_cols=86 Identities=8% Similarity=-0.011 Sum_probs=73.3
Q ss_pred CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591 16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV 95 (144)
Q Consensus 16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l 95 (144)
+.|+||+.|. .++..+++++...|++++++++.+++||+...+.|++.+++.|++|+..+.+... .||..+|
T Consensus 98 ~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~------~d~~~~l 169 (325)
T 2h4a_A 98 QLCYYGLSPE--DEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP------ADVTYFV 169 (325)
T ss_dssp TEEECCCCHH--HHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST------THHHHHH
T ss_pred CeEEEECCHH--HHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCH------HHHHHHH
Confidence 5577776554 4789999988778999999999999999999999999999999999988888643 4899999
Q ss_pred HHHhcCCCceEEEEee
Q psy12591 96 LKLLTKPRARGLFKRL 111 (144)
Q Consensus 96 ~~lk~~~~arvii~~~ 111 (144)
++++ .++++|++..
T Consensus 170 ~~i~--~~pDaV~~~~ 183 (325)
T 2h4a_A 170 QENN--SNTTALYAVA 183 (325)
T ss_dssp HHST--TCCCEEEECC
T ss_pred HhcC--CCCCEEEEeC
Confidence 9996 6788888754
No 38
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.13 E-value=0.26 Score=35.86 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC----CcchhhHHHHHHH-H-hcC
Q psy12591 28 HQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG----VAEETAYDDIVLK-L-LTK 101 (144)
Q Consensus 28 ~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~----~~~~~~~~~~l~~-l-k~~ 101 (144)
..+.+.+..++..|-++|+++. .|.....+.+++.+++.|+.+........... ..+...+.+.+.+ + + .
T Consensus 103 ~~~~A~~~al~~~g~~rvgllt---py~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 178 (240)
T 3ixl_A 103 TMSTAVLNGLRALGVRRVALAT---AYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEA-A 178 (240)
T ss_dssp EHHHHHHHHHHHTTCSEEEEEE---SSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHT-S
T ss_pred CHHHHHHHHHHHhCCCEEEEEe---CChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhc-C
Confidence 3567888888999999999997 38888888899999999999876554322110 0135578888888 7 6 6
Q ss_pred CCceEEEEeeEEee
Q psy12591 102 PRARGLFKRLKLVK 115 (144)
Q Consensus 102 ~~arvii~~~~~~~ 115 (144)
++++.||+-++.+.
T Consensus 179 ~~adaivL~CT~l~ 192 (240)
T 3ixl_A 179 PDSDGILLSSGGLL 192 (240)
T ss_dssp TTCSEEEEECTTSC
T ss_pred CCCCEEEEeCCCCc
Confidence 89999999887654
No 39
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=94.06 E-value=0.24 Score=38.37 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcch--HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGV--KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK 109 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~--~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~ 109 (144)
.+.++++.+|.+++.+|++...+.. +..+.+.+.|++.|+++.....+.+++ +.+.+.+.+..++ ..+++.||.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIa 98 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNP---KDTNVRDGLAVFR-REQCDIIVT 98 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSC---BHHHHHHHHHHHH-HTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHHHHHH-hcCCCEEEE
Confidence 3556777889999999887665555 478889999999998875444555554 4778888888888 577888887
Q ss_pred eeE
Q psy12591 110 RLK 112 (144)
Q Consensus 110 ~~~ 112 (144)
...
T Consensus 99 vGG 101 (387)
T 3bfj_A 99 VGG 101 (387)
T ss_dssp EES
T ss_pred eCC
Confidence 754
No 40
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=93.95 E-value=0.13 Score=39.94 Aligned_cols=77 Identities=12% Similarity=0.041 Sum_probs=57.4
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.+|.+++.+|++..-...+..+.+.+.|++.|+.+.....+.+++ +.+.+.+.+..++ ..+++.||-..
T Consensus 21 ~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavG 96 (383)
T 3ox4_A 21 KAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNP---TVTAVLEGLKILK-DNNSDFVISLG 96 (383)
T ss_dssp HHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSC---BHHHHHHHHHHHH-HHTCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHHHHHH-hcCcCEEEEeC
Confidence 4456678889999999987653333467889999999998876555566665 4778888888888 56788888765
Q ss_pred E
Q psy12591 112 K 112 (144)
Q Consensus 112 ~ 112 (144)
.
T Consensus 97 G 97 (383)
T 3ox4_A 97 G 97 (383)
T ss_dssp S
T ss_pred C
Confidence 4
No 41
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=92.38 E-value=0.67 Score=36.18 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
.+.++++.+|.+++.+|+++...-. +..+.+.+.|++.|+.+.....+.+++ +.+.+.+.+..++ ..+++.||..
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIav 108 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNP---VLSKVHEAVEVAK-KEKVEAVLGV 108 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSC---BHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence 3556777889899999886444433 367888899999998775444444444 4678888888888 5778888877
Q ss_pred eE
Q psy12591 111 LK 112 (144)
Q Consensus 111 ~~ 112 (144)
..
T Consensus 109 GG 110 (407)
T 1vlj_A 109 GG 110 (407)
T ss_dssp ES
T ss_pred CC
Confidence 53
No 42
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=92.29 E-value=2.5 Score=31.08 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC----CcchhhHHHHHHHHhcCCCce
Q psy12591 30 VKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG----VAEETAYDDIVLKLLTKPRAR 105 (144)
Q Consensus 30 ~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~----~~~~~~~~~~l~~lk~~~~ar 105 (144)
+.+++..++..|-++|+++. .|.....+.+++.+++.|+.+........... ..+...+.+.+.++. ..+++
T Consensus 134 ~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~-~~gad 209 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLD-LSEVD 209 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSC-CTTCS
T ss_pred HHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHh-hCCCC
Confidence 56667777778889999995 56666777888999999998765443322100 012456778888886 68999
Q ss_pred EEEEe-eEEee
Q psy12591 106 GLFKR-LKLVK 115 (144)
Q Consensus 106 vii~~-~~~~~ 115 (144)
+||+- ++.+.
T Consensus 210 aIvLg~CT~l~ 220 (273)
T 2xed_A 210 ALVISCAVQMP 220 (273)
T ss_dssp EEEEESSSSSC
T ss_pred EEEEcCCCCcc
Confidence 99998 87654
No 43
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=92.18 E-value=0.28 Score=37.97 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.++.+++.++++...+..+..+.+.+.|++.|+.+.....+.+++ +.+.+.+.+..++ ..+++.||...
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIavG 96 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNP---TITVVKEGLGVFQ-NSGADYLIAIG 96 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSC---BHHHHHHHHHHHH-HHTCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHHHHHH-hcCcCEEEEeC
Confidence 3556677778899988886544333478888999999998876555565554 4778888888888 56788888775
Q ss_pred E
Q psy12591 112 K 112 (144)
Q Consensus 112 ~ 112 (144)
.
T Consensus 97 G 97 (386)
T 1rrm_A 97 G 97 (386)
T ss_dssp S
T ss_pred C
Confidence 4
No 44
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=91.61 E-value=1 Score=33.01 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=50.0
Q ss_pred HHHHHHHHHhC--CCcEEEEEEEeCC-cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceE
Q psy12591 30 VKAMVEIVKKL--GWSYVSIIYEESN-YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106 (144)
Q Consensus 30 ~~a~~~ll~~f--~W~~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arv 106 (144)
+...++++... |.++|++++...+ .+....+.+++.+++.|+.+...... . ..+....+++|. .+..+
T Consensus 126 ~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~--~-----~~~~~~~~~~l~--~~~da 196 (302)
T 2qh8_A 126 VEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL--K-----SADVQSATQAIA--EKSDV 196 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS--S-----GGGHHHHHHHHG--GGCSE
T ss_pred HHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC--C-----hHHHHHHHHHHh--ccCCE
Confidence 45566777665 9999999997654 35566788999999999987654322 1 345667788886 25666
Q ss_pred EEEe
Q psy12591 107 LFKR 110 (144)
Q Consensus 107 ii~~ 110 (144)
|++.
T Consensus 197 i~~~ 200 (302)
T 2qh8_A 197 IYAL 200 (302)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6654
No 45
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=91.23 E-value=1.7 Score=31.54 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhC--CCcEEEEEEEeCCc-chHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCce
Q psy12591 29 QVKAMVEIVKKL--GWSYVSIIYEESNY-GVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105 (144)
Q Consensus 29 ~~~a~~~ll~~f--~W~~Vaii~~~~~~-g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~ar 105 (144)
-+...+++|... |-++|++++...+. +....+.+++++++.|+.+...... . ..+....+++|. .+..
T Consensus 118 ~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~--~-----~~~~~~~~~~l~--~~~d 188 (295)
T 3lft_A 118 PAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP--S-----TNEIASTVTVMT--SKVD 188 (295)
T ss_dssp CHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES--S-----GGGHHHHHHHHT--TTCS
T ss_pred cHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecC--C-----HHHHHHHHHHHH--hcCC
Confidence 355666777666 89999999987553 4556788999999999987654322 1 245667788886 3566
Q ss_pred EEEEe
Q psy12591 106 GLFKR 110 (144)
Q Consensus 106 vii~~ 110 (144)
+|++.
T Consensus 189 ai~~~ 193 (295)
T 3lft_A 189 AIWVP 193 (295)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77654
No 46
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=91.05 E-value=1.4 Score=33.87 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=54.5
Q ss_pred HHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 33 MVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 33 ~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.++++.+| +++.+|++.+.+.. +..+.+.+.|++.|+.+.....+.+++ +.+.+.+.+..++ ..+++.||...
T Consensus 32 l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIavG 106 (371)
T 1o2d_A 32 RGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENP---SFDNVMKAVERYR-NDSFDFVVGLG 106 (371)
T ss_dssp HGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSC---BHHHHHHHHHHHT-TSCCSEEEEEE
T ss_pred HHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCC---CHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 345566678 89999887654432 367888899999998775555555554 4778888888888 56888888775
Q ss_pred E
Q psy12591 112 K 112 (144)
Q Consensus 112 ~ 112 (144)
.
T Consensus 107 G 107 (371)
T 1o2d_A 107 G 107 (371)
T ss_dssp S
T ss_pred C
Confidence 4
No 47
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=90.31 E-value=3.5 Score=29.03 Aligned_cols=81 Identities=17% Similarity=0.055 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC----CcchhhHHHHHHHHhcCC--C
Q psy12591 30 VKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG----VAEETAYDDIVLKLLTKP--R 103 (144)
Q Consensus 30 ~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~----~~~~~~~~~~l~~lk~~~--~ 103 (144)
..++++.++..|-++|+++. .|.....+.+++.+++.|+.+........... ..+...+.+.+.++. .+ +
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g 171 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHL-NEVLK 171 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTH-HHHTT
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHh-cccCC
Confidence 56777777778889999995 56667777888899999988765443322100 012455777777776 56 8
Q ss_pred ceEEEEeeEEe
Q psy12591 104 ARGLFKRLKLV 114 (144)
Q Consensus 104 arvii~~~~~~ 114 (144)
+++||+-++.+
T Consensus 172 adaIvLgCT~l 182 (223)
T 2dgd_A 172 ADAVYIACTAL 182 (223)
T ss_dssp SSEEEECCTTS
T ss_pred CCEEEEeCCcc
Confidence 99999987754
No 48
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=89.88 E-value=2.2 Score=31.16 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=52.9
Q ss_pred EEecCCchHHHHHHHHHHHhC--CCcEEEEEEEeC--CcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKL--GWSYVSIIYEES--NYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV 95 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f--~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l 95 (144)
......+...+..+++.|... |.++|+++.... .......+.|.+.+++.|+.+..... .+. +..+....+
T Consensus 99 ~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~---~~~~~~~~~ 173 (313)
T 2h3h_A 99 VYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILN--DEE---DGARAVSLA 173 (313)
T ss_dssp CEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEE--CSS---CHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeec--CCC---CHHHHHHHH
Confidence 344555555667777776655 899999998652 33456678899999999988754321 111 133344445
Q ss_pred HHHhc-CCCceEEEEe
Q psy12591 96 LKLLT-KPRARGLFKR 110 (144)
Q Consensus 96 ~~lk~-~~~arvii~~ 110 (144)
+++.. .++..+|++.
T Consensus 174 ~~~l~~~~~~~ai~~~ 189 (313)
T 2h3h_A 174 EAALNAHPDLDAFFGV 189 (313)
T ss_dssp HHHHHHCTTCCEEEEC
T ss_pred HHHHHHCcCceEEEEc
Confidence 55442 3456677654
No 49
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=89.02 E-value=0.71 Score=35.92 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.+| +++.+|++...+. ...+.+.+.|++ |+.+ ....+..++ +.+.+.+.+..++ ..+++.||-..
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~-~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIavG 114 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDI-RFERFGGEC---CTSEIERVRKVAI-EHGSDILVGVG 114 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEE-EEEECCSSC---SHHHHHHHHHHHH-HHTCSEEEEES
T ss_pred HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCe-EEEEcCCCC---CHHHHHHHHHHHh-hcCCCEEEEeC
Confidence 3456778889 9998888766554 367788888988 9887 334455554 3677888888888 46788888764
No 50
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=88.96 E-value=3.7 Score=28.03 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=46.5
Q ss_pred cEEEEEEEeCCcch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEESNYGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~~~~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
-+++||...|+.|+ .....+...+++.|+.+.....++.+ ...+.+.|.+..+..++++||...
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd-----~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN-----RYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEeCC
Confidence 47899988777663 34677888999999988877777654 567777887766322588887764
No 51
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=88.56 E-value=2.5 Score=32.09 Aligned_cols=73 Identities=19% Similarity=0.139 Sum_probs=50.9
Q ss_pred HHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 33 MVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 33 ~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
+.++++.++.+++.+|++...+. ...+.+.+.+++.|+.+...... +++ +.+.+.+. ..++ ..+.+.||....
T Consensus 25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~---~~~~v~~~-~~~~-~~~~d~IIavGG 97 (354)
T 3ce9_A 25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNI---DFDEIGTN-AFKI-PAEVDALIGIGG 97 (354)
T ss_dssp HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCC---BHHHHHHH-HTTS-CTTCCEEEEEES
T ss_pred HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCC---CHHHHHHH-HHhh-hcCCCEEEEECC
Confidence 55677778888988888765443 56788888999999877543323 343 36677777 7777 577888887653
No 52
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=85.71 E-value=3.6 Score=28.03 Aligned_cols=63 Identities=10% Similarity=-0.064 Sum_probs=42.4
Q ss_pred EEEEEEEeCCcc----------hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEESNYG----------VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~~~~g----------~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+++||+..|.-. ......+.+.|++.|+.+.....++++ ...+...+....+..++++||...
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd-----~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD-----KIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHTCTTCCEEEEES
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEecC
Confidence 688887544210 224567888999999999887777655 456767776655345678887765
No 53
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=85.60 E-value=2.7 Score=32.14 Aligned_cols=72 Identities=14% Similarity=0.061 Sum_probs=50.6
Q ss_pred HHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 33 MVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 33 ~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.++++.+| +++.+|++...+. ...+.+.+.|++.|+.+.+ ..+...+ +...+.+.+..++ ..+++.||...
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~---~~~~v~~~~~~~~-~~~~d~IIavG 94 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEA---SRNEVERIANIAR-KAEAAIVIGVG 94 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSC---BHHHHHHHHHHHH-HTTCSEEEEEE
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCC---CHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 556777778 8988888654443 4678888899989988753 3344433 3567788888887 56788888665
No 54
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=85.09 E-value=1.9 Score=30.87 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=50.5
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
....++...+..+++.|...|.++|+++..... .+....+.|.+.+++.|+.+.....+..+. ...+....+.++
T Consensus 118 ~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ 194 (296)
T 3brq_A 118 SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKW---TPASGAEGVEML 194 (296)
T ss_dssp EECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCS---SHHHHHHHHHHH
T ss_pred EEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCC---ChhHHHHHHHHH
Confidence 344444445577778776679999999986533 345567888999999987653211122111 123334455555
Q ss_pred hc-CCCceEEEEe
Q psy12591 99 LT-KPRARGLFKR 110 (144)
Q Consensus 99 k~-~~~arvii~~ 110 (144)
.+ .++.++|++.
T Consensus 195 l~~~~~~~ai~~~ 207 (296)
T 3brq_A 195 LERGAKFSALVAS 207 (296)
T ss_dssp HTC--CCSEEEES
T ss_pred HhCCCCCCEEEEC
Confidence 42 2456777654
No 55
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=83.69 E-value=7.8 Score=26.59 Aligned_cols=67 Identities=10% Similarity=-0.041 Sum_probs=46.0
Q ss_pred CCCcEEEEEEEeCC-c------c---hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591 40 LGWSYVSIIYEESN-Y------G---VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK 109 (144)
Q Consensus 40 f~W~~Vaii~~~~~-~------g---~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~ 109 (144)
+.=-+++||...|+ + | ......+...+++.|+.+.....++++ ...+.+.|.+..+..++++||.
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd-----~~~I~~al~~a~~~~~~DlVit 87 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD-----KIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEE
Confidence 33457888876652 1 2 345677888999999998877767654 5677788877652334888887
Q ss_pred ee
Q psy12591 110 RL 111 (144)
Q Consensus 110 ~~ 111 (144)
..
T Consensus 88 tG 89 (178)
T 2pjk_A 88 TG 89 (178)
T ss_dssp ES
T ss_pred CC
Confidence 64
No 56
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=83.59 E-value=3.9 Score=28.81 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=52.1
Q ss_pred EEecCCchHHHHHHHHHHHhC----CCcEEEEEEEeCC--cchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHH
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKL----GWSYVSIIYEESN--YGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYD 92 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f----~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~ 92 (144)
......+...+..+++.|... |.++|+++..... ......+.|.+.+++. |+.+... +.... ......
T Consensus 101 ~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~---~~~~~~ 175 (276)
T 3ksm_A 101 GLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGD---DRGAAR 175 (276)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCS---SHHHHH
T ss_pred eEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCC---cHHHHH
Confidence 334556666677778877665 8999999975432 3456778899999887 8887632 22221 123333
Q ss_pred HHHHHHh-cCCCceEEEEe
Q psy12591 93 DIVLKLL-TKPRARGLFKR 110 (144)
Q Consensus 93 ~~l~~lk-~~~~arvii~~ 110 (144)
..+.++. ..++.++|++.
T Consensus 176 ~~~~~~l~~~~~~~ai~~~ 194 (276)
T 3ksm_A 176 SEMLRLLKETPTIDGLFTP 194 (276)
T ss_dssp HHHHHHHHHCSCCCEEECC
T ss_pred HHHHHHHHhCCCceEEEEC
Confidence 4444443 23456677654
No 57
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=83.34 E-value=10 Score=27.11 Aligned_cols=90 Identities=8% Similarity=-0.104 Sum_probs=52.5
Q ss_pred ceEEecCCchHHHHHHHHHHHh------------CCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCC
Q psy12591 18 YFTRTIPSDHHQVKAMVEIVKK------------LGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDS 83 (144)
Q Consensus 18 ~ffRt~p~d~~~~~a~~~ll~~------------f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~ 83 (144)
.+......+...+..+++.|.. .|-++|+++..... ......+.|.+.+++.|+.+.....+..+.
T Consensus 104 ~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~ 183 (309)
T 2fvy_A 104 KAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 183 (309)
T ss_dssp TEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 4445555555566667776654 68889999976432 345567788899999987654332222221
Q ss_pred CCcchhhHHHHHHHHhcC-C--CceEEEEe
Q psy12591 84 GVAEETAYDDIVLKLLTK-P--RARGLFKR 110 (144)
Q Consensus 84 ~~~~~~~~~~~l~~lk~~-~--~arvii~~ 110 (144)
+.......++++... + +.++|++.
T Consensus 184 ---~~~~~~~~~~~~l~~~~~~~~~ai~~~ 210 (309)
T 2fvy_A 184 ---DTAQAKDKMDAWLSGPNANKIEVVIAN 210 (309)
T ss_dssp ---CHHHHHHHHHHHHTSTTGGGCCEEEES
T ss_pred ---CHHHHHHHHHHHHHhCCCCCccEEEEC
Confidence 123333455555422 2 56677654
No 58
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=83.33 E-value=8.4 Score=26.06 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=46.7
Q ss_pred CCcEEEEEEEeCCcch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 41 GWSYVSIIYEESNYGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 41 ~W~~Vaii~~~~~~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.=-+++||...|+-|+ .....+...+++.|+.+.....++++ ...+.+.|.+..+..++++||...
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd-----~~~i~~~l~~~~~~~~~DlVittG 80 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD-----KESIQQAVLAGYHKEDVDVVLTNG 80 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS-----HHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 3357899987776552 35677888899999988877767654 567778887766223688887764
No 59
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=83.28 E-value=7.9 Score=27.26 Aligned_cols=87 Identities=11% Similarity=0.001 Sum_probs=51.0
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
.....+...+..+++.|...|.++|+++..... ......+.|.+.+++.|+.+.....+.... ...+....+.++
T Consensus 99 ~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ 175 (275)
T 3d8u_A 99 NIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAP---SSQLGAEGLAKL 175 (275)
T ss_dssp EECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCC---CHHHHHHHHHHH
T ss_pred EEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCC---ChhHHHHHHHHH
Confidence 344455555677778776779999999986533 344567788899999987543221121111 123333445554
Q ss_pred hc-CCCceEEEEe
Q psy12591 99 LT-KPRARGLFKR 110 (144)
Q Consensus 99 k~-~~~arvii~~ 110 (144)
.+ .++.++|++.
T Consensus 176 l~~~~~~~ai~~~ 188 (275)
T 3d8u_A 176 LLRDSSLNALVCS 188 (275)
T ss_dssp HTTCTTCCEEEES
T ss_pred HhCCCCCCEEEEc
Confidence 42 2456777654
No 60
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=83.07 E-value=4.1 Score=31.11 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=50.8
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.+|.+++.+|++.... +..+.+.+.|++.++.+ ...+.+++ +.+.+.+.+..++ ..+++.||-..
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v--~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavG 95 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV--FSEAAMHT---PVEVTKTAVEAYR-AAGADCVVSLG 95 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE--ECCCCTTC---BHHHHHHHHHHHH-HTTCSEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE--ecCcCCCC---cHHHHHHHHHHHh-ccCCCEEEEeC
Confidence 45677888999999998876543 35778888888876543 23333343 3667888888888 57788888765
Q ss_pred E
Q psy12591 112 K 112 (144)
Q Consensus 112 ~ 112 (144)
.
T Consensus 96 G 96 (353)
T 3hl0_A 96 G 96 (353)
T ss_dssp S
T ss_pred C
Confidence 3
No 61
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=83.02 E-value=10 Score=27.03 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=53.7
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
....+...+..+++.|...|-++|+++....+ ......+.|.+.+++.|+.+.....+.... +.......+.++.
T Consensus 107 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~l 183 (288)
T 3gv0_A 107 HDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIET---PLEKIRDFGQRLM 183 (288)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTS---CHHHHHHHHHHHT
T ss_pred EEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheecccc---chHHHHHHHHHHH
Confidence 34455556677778887789999999976543 345567889999999998765332232221 2334445555554
Q ss_pred c-CCCceEEEEe
Q psy12591 100 T-KPRARGLFKR 110 (144)
Q Consensus 100 ~-~~~arvii~~ 110 (144)
+ .++..+|++.
T Consensus 184 ~~~~~~~ai~~~ 195 (288)
T 3gv0_A 184 QSSDRPDGIVSI 195 (288)
T ss_dssp TSSSCCSEEEES
T ss_pred hCCCCCcEEEEc
Confidence 2 3456677654
No 62
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=82.18 E-value=2.6 Score=30.23 Aligned_cols=54 Identities=6% Similarity=0.087 Sum_probs=38.6
Q ss_pred EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEE
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V 73 (144)
......+...+..+++.|...|.++|+++..... ......+.|.+.+++.|+.+
T Consensus 100 ~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 155 (288)
T 2qu7_A 100 PSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNV 155 (288)
T ss_dssp CEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3344455556677778777779999999986532 34556778888999988765
No 63
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=82.10 E-value=3.3 Score=29.55 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=50.0
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeC--CcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEES--NYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
.....+...+..+++.|...|.++|+++.... .......+.|.+.+++.|+.+.....+..+. +..+....+.++
T Consensus 105 ~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ 181 (289)
T 1dbq_A 105 AVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDF---EPESGYRAMQQI 181 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCS---SHHHHHHHHHHH
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCC---CHHHHHHHHHHH
Confidence 34445555667777877777999999997542 3455677889999999987643211121111 123333445555
Q ss_pred hc-CCCceEEEEe
Q psy12591 99 LT-KPRARGLFKR 110 (144)
Q Consensus 99 k~-~~~arvii~~ 110 (144)
.+ .++.++|++.
T Consensus 182 l~~~~~~~ai~~~ 194 (289)
T 1dbq_A 182 LSQPHRPTAVFCG 194 (289)
T ss_dssp HTSSSCCSEEEES
T ss_pred HhCCCCCCEEEEC
Confidence 42 2456777654
No 64
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=82.07 E-value=12 Score=26.86 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=54.8
Q ss_pred ceEEecCCchHHHHHHHHHHHhCC--CcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591 18 YFTRTIPSDHHQVKAMVEIVKKLG--WSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD 93 (144)
Q Consensus 18 ~ffRt~p~d~~~~~a~~~ll~~f~--W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~ 93 (144)
.+......+...+..+++.|...+ -++++++..... ......+.|.+.+++.|+.+.... ... .......
T Consensus 104 ~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~~~----~~~~~~~ 177 (297)
T 3rot_A 104 YLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD--VGT----DPNQVQS 177 (297)
T ss_dssp CSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--CCS----CHHHHHH
T ss_pred cceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee--cCC----ChHHHHH
Confidence 344455566667777888776667 899999975533 334567889999999999886544 111 1233344
Q ss_pred HHHH-HhcCCCceEEEEe
Q psy12591 94 IVLK-LLTKPRARGLFKR 110 (144)
Q Consensus 94 ~l~~-lk~~~~arvii~~ 110 (144)
.+.+ |+..++.++|++.
T Consensus 178 ~~~~~l~~~~~~~ai~~~ 195 (297)
T 3rot_A 178 RVKSYFKIHPETNIIFCL 195 (297)
T ss_dssp HHHHHHHHCTTCCEEEES
T ss_pred HHHHHHHhCCCCCEEEEc
Confidence 4544 3334566777654
No 65
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=81.80 E-value=3.9 Score=29.07 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=53.3
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh-c
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL-T 100 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk-~ 100 (144)
....+...+..+++.|...|.++|+++...........+.|.+.+++.|+.+.... +.... +.......+.++. .
T Consensus 98 V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~ 173 (280)
T 3gyb_A 98 VANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPA---VEHAGYTETLALLKE 173 (280)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCC---CHHHHHHHHHHHHHH
T ss_pred EEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCC---CHHHHHHHHHHHHhC
Confidence 34455556677788887789999999987654455677889999999998765332 22221 1233333444433 2
Q ss_pred CCCceEEEEe
Q psy12591 101 KPRARGLFKR 110 (144)
Q Consensus 101 ~~~arvii~~ 110 (144)
.++..+|++.
T Consensus 174 ~~~~~ai~~~ 183 (280)
T 3gyb_A 174 HPEVTAIFSS 183 (280)
T ss_dssp CTTCCEEEES
T ss_pred CCCCCEEEEC
Confidence 3556777654
No 66
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=81.44 E-value=4.2 Score=28.75 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=38.1
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeC-C-----cch-HHHHHHHHHhhhCceEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEES-N-----YGV-KAFEELEVLLAKYSICI 73 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~-~-----~g~-~~~~~~~~~l~~~Gi~V 73 (144)
....+...+..+++.|...|.++|+++.... . ... ...+.|.+.+++.|+.+
T Consensus 94 V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~ 152 (276)
T 2h0a_A 94 VYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPF 152 (276)
T ss_dssp EEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCC
Confidence 4445555667777888777999999998654 3 445 66788999999998754
No 67
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=81.14 E-value=9.8 Score=28.63 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=46.0
Q ss_pred HHHHhCCCcEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEE-EEee
Q psy12591 35 EIVKKLGWSYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL-FKRL 111 (144)
Q Consensus 35 ~ll~~f~W~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvi-i~~~ 111 (144)
-+.++||.+.+++... +.+.+..-...+.+.++++++.+.+.+..... +.++.|.+..+++++ +++.
T Consensus 216 Yfa~~yGL~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~----------~~~~~iA~e~g~~v~~~l~~ 285 (321)
T 1xvl_A 216 YLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD----------KGQKQVAQATGARFGGNLYV 285 (321)
T ss_dssp HHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCS----------HHHHHHHTTTCCEEEEEECS
T ss_pred HHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCCh----------HHHHHHHHhcCCceeeeecC
Confidence 3557899998887543 34556666777888889999887776644322 233334435778876 3444
Q ss_pred EEeeeCC
Q psy12591 112 KLVKDSG 118 (144)
Q Consensus 112 ~~~~~~g 118 (144)
..+..+|
T Consensus 286 d~l~~~~ 292 (321)
T 1xvl_A 286 DSLSTEE 292 (321)
T ss_dssp SCCCCSS
T ss_pred CccCCCC
Confidence 4443333
No 68
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=80.77 E-value=13 Score=27.21 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=52.9
Q ss_pred ceEEecCCchHHHHHHHHHHHh--CCCcEEEEEEEeCC--cchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHH
Q psy12591 18 YFTRTIPSDHHQVKAMVEIVKK--LGWSYVSIIYEESN--YGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYD 92 (144)
Q Consensus 18 ~ffRt~p~d~~~~~a~~~ll~~--f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~ 92 (144)
.+......+...+..+++.|.. -|.++|+++....+ ......+.|.+.+++. |+.+... +..+. +..+..
T Consensus 110 ~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~--~~~~~---~~~~~~ 184 (332)
T 2rjo_A 110 YVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDF--QVADW---NSQKAF 184 (332)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEE--EECTT---CHHHHH
T ss_pred eeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEee--ccCCC---CHHHHH
Confidence 3445555666666777777655 69999999986532 3455678889999998 9877542 22121 123333
Q ss_pred HHHHHHhc--CCCceEEEEe
Q psy12591 93 DIVLKLLT--KPRARGLFKR 110 (144)
Q Consensus 93 ~~l~~lk~--~~~arvii~~ 110 (144)
..+.++.+ .++.++|++.
T Consensus 185 ~~~~~ll~~~~~~~~aI~~~ 204 (332)
T 2rjo_A 185 PIMQAWMTRFNSKIKGVWAA 204 (332)
T ss_dssp HHHHHHHHHHGGGEEEEEES
T ss_pred HHHHHHHHhcCCCeeEEEEC
Confidence 44444432 2346666654
No 69
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=80.29 E-value=11 Score=26.73 Aligned_cols=87 Identities=17% Similarity=0.048 Sum_probs=50.4
Q ss_pred eEEecCCchHHHHHHHHHHHh-CC-CcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591 19 FTRTIPSDHHQVKAMVEIVKK-LG-WSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI 94 (144)
Q Consensus 19 ffRt~p~d~~~~~a~~~ll~~-f~-W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~ 94 (144)
+....+.+...+..+++.|.. .| .++|+++....+ ......+.|.+.+++.|..+... +.... +..+....
T Consensus 106 ~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~---~~~~~~~~ 180 (289)
T 3brs_A 106 DITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAI--YYCDS---NYDKAYDG 180 (289)
T ss_dssp SEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EECTT---CHHHHHHH
T ss_pred eEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEee--ecCCC---CHHHHHHH
Confidence 444555555666777776655 56 999999986532 34556788889999888764322 22121 12333344
Q ss_pred HHHHhc-CCCceEEEEe
Q psy12591 95 VLKLLT-KPRARGLFKR 110 (144)
Q Consensus 95 l~~lk~-~~~arvii~~ 110 (144)
+.++.. .++.++|++.
T Consensus 181 ~~~~l~~~~~~~ai~~~ 197 (289)
T 3brs_A 181 TVELLTKYPDISVMVGL 197 (289)
T ss_dssp HHHHHHHCTTEEEEEES
T ss_pred HHHHHHhCCCceEEEEC
Confidence 444432 3456666553
No 70
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=80.14 E-value=7.2 Score=27.84 Aligned_cols=53 Identities=8% Similarity=-0.094 Sum_probs=36.0
Q ss_pred EecCCchHHHHHHHHHHHhCCC--cEEEEEEEeC------CcchHHHHHHHHHhhhCceEE
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGW--SYVSIIYEES------NYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W--~~Vaii~~~~------~~g~~~~~~~~~~l~~~Gi~V 73 (144)
...+.+...+..+++.|...|. ++|+++.... .......+.|.+.+++.|..+
T Consensus 112 ~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (304)
T 3gbv_A 112 FFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPAC 172 (304)
T ss_dssp EEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTS
T ss_pred EEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCc
Confidence 3445555566777787777777 9999998431 233456778888888877543
No 71
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=80.06 E-value=9.4 Score=27.59 Aligned_cols=23 Identities=4% Similarity=-0.229 Sum_probs=11.3
Q ss_pred CCcchHHHHHHHHHhhhCceEEE
Q psy12591 52 SNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 52 ~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
+.|+....+.+++.+++.|+.+.
T Consensus 14 ~~~~~~~~~gi~~~a~~~g~~~~ 36 (313)
T 3m9w_A 14 LERWQKDRDIFVKKAESLGAKVF 36 (313)
T ss_dssp SSTTHHHHHHHHHHHHHTSCEEE
T ss_pred ChHHHHHHHHHHHHHHHcCCEEE
Confidence 34444555555555555554443
No 72
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=79.94 E-value=13 Score=26.00 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=39.5
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
....+...+..+++.|...|.++|+++....+ ......+.|.+.+++.|+.+..
T Consensus 100 V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 155 (272)
T 3o74_A 100 VISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR 155 (272)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE
T ss_pred EEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe
Confidence 34445556677778887789999999987543 3455678899999999987643
No 73
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=79.63 E-value=13 Score=26.55 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=50.5
Q ss_pred EEecCCchHHHHHHHHHHHhC--CCcEEEEEEEeCCc-chHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHH
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKL--GWSYVSIIYEESNY-GVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVL 96 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f--~W~~Vaii~~~~~~-g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~ 96 (144)
....+.+...+..+++.|... |-++|+++...... .....+.|.+.+++.|..+.....+..+. +.......+.
T Consensus 103 ~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 179 (305)
T 3g1w_A 103 SFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRG---DSLHSRRVAH 179 (305)
T ss_dssp CEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTT---CHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCCC---CHHHHHHHHH
Confidence 344555666667777777666 89999999854332 23456778888888765444332222221 1233333444
Q ss_pred HH-hcCCCceEEEEe
Q psy12591 97 KL-LTKPRARGLFKR 110 (144)
Q Consensus 97 ~l-k~~~~arvii~~ 110 (144)
++ +..++..+|++.
T Consensus 180 ~~l~~~~~~~ai~~~ 194 (305)
T 3g1w_A 180 QLLEDYPNLAGIFAT 194 (305)
T ss_dssp HHHHHCTTEEEEEES
T ss_pred HHHHhCCCceEEEEC
Confidence 43 324566777654
No 74
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=78.21 E-value=15 Score=26.16 Aligned_cols=65 Identities=6% Similarity=0.111 Sum_probs=36.1
Q ss_pred cEEEEEEEe---CCcchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEE---SNYGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~---~~~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
..|+++..+ +.|.....+.+++.+++. |..+.......... +.......++.+. ..+++.||+..
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~---~~~~~~~~i~~l~-~~~vdgiii~~ 77 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPY---DYNSFVATSQAVI-EEQPDGVMFAP 77 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSS---CHHHHHHHHHHHH-TTCCSEEEECC
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCC---CHHHHHHHHHHHH-hcCCCEEEECC
Confidence 456666533 456667777777777776 65554433322211 1334445566665 45666666653
No 75
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=77.73 E-value=6.2 Score=28.10 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=51.9
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
.........+..+++.|...|-++|+++....+ ......+.|.+.+++.|+.+.....+..+. +.......+.++
T Consensus 110 ~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~ 186 (292)
T 3k4h_A 110 YVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDF---SRESGQQAVEEL 186 (292)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS---SHHHHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCC---CHHHHHHHHHHH
Confidence 344455556677778887789999999986543 334567888999999987653221112121 133334445444
Q ss_pred hc-CCCceEEEEe
Q psy12591 99 LT-KPRARGLFKR 110 (144)
Q Consensus 99 k~-~~~arvii~~ 110 (144)
.. .++..+|++.
T Consensus 187 l~~~~~~~ai~~~ 199 (292)
T 3k4h_A 187 MGLQQPPTAIMAT 199 (292)
T ss_dssp HTSSSCCSEEEES
T ss_pred HcCCCCCcEEEEc
Confidence 42 3456677654
No 76
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=77.18 E-value=8.4 Score=26.74 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=44.0
Q ss_pred cEEEEEEEeCCc--c--hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEESNY--G--VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~~~~--g--~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
-+++||...|+- | ......+...+++.|+.+.....++++ ...+.+.|.+.. ..++++||...
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd-----~~~I~~al~~a~-~~~~DlVIttG 97 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD-----EVDIRNALNTAV-IGGVDLVVSVG 97 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC-----HHHHHHHHHHHH-HTTCSEEEEES
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC-----HHHHHHHHHHHH-hCCCCEEEECC
Confidence 458888765432 2 335677888899999998887777655 466777777654 24688887764
No 77
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=77.06 E-value=13 Score=26.36 Aligned_cols=84 Identities=6% Similarity=0.028 Sum_probs=46.8
Q ss_pred ecCCchHHHHHHHHHHHhC------CCcE--EEEEEEeCC--cchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhh
Q psy12591 22 TIPSDHHQVKAMVEIVKKL------GWSY--VSIIYEESN--YGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETA 90 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f------~W~~--Vaii~~~~~--~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~ 90 (144)
+...+...+..+++.|... |.++ ++++....+ ......+.|.+.+++. |+.+... +.... +..+
T Consensus 103 V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~~~~~---~~~~ 177 (290)
T 2fn9_A 103 IYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQ--QSAEF---DRDT 177 (290)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEE--EECTT---CHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEe--ccCCC---CHHH
Confidence 4444555566777766555 7899 555554322 3445677888999988 8876432 22111 1223
Q ss_pred HHHHHHHHhc-CCCceEEEEe
Q psy12591 91 YDDIVLKLLT-KPRARGLFKR 110 (144)
Q Consensus 91 ~~~~l~~lk~-~~~arvii~~ 110 (144)
-...++++.+ .++.++|++.
T Consensus 178 ~~~~~~~ll~~~~~~~ai~~~ 198 (290)
T 2fn9_A 178 AYKVTEQILQAHPEIKAIWCG 198 (290)
T ss_dssp HHHHHHHHHHHCTTCCEEEES
T ss_pred HHHHHHHHHHhCCCCcEEEEC
Confidence 3344444432 3456777654
No 78
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=76.97 E-value=11 Score=25.23 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=42.0
Q ss_pred EEEEEEEeCCc--c---hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEESNY--G---VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~~~~--g---~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+++||...|+- | ......+...+++.|+.+.....++.+ ...+.+.|.+..+..++++||...
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd-----~~~i~~~l~~~~~~~~~DlVittG 70 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE-----PPMIKKVLRLWADREGLDLILTNG 70 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC-----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC-----HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 57777665541 2 224567888899999988877767654 567777777765222688887664
No 79
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=76.69 E-value=18 Score=25.81 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=47.8
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhc-
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLT- 100 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~- 100 (144)
..+...+..+++.|...|.++|+++..... ......+.|.+.+++.|+..... +..+. +..+-...+.++.+
T Consensus 120 ~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~--~~~~~---~~~~~~~~~~~~l~~ 194 (293)
T 2iks_A 120 GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFL--YANSY---EREAAAQLFEKWLET 194 (293)
T ss_dssp ECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEE--EESSS---CHHHHHHHHHHHTTT
T ss_pred ecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCccEE--EcCCC---ChhhHHHHHHHHHhc
Confidence 344445566777777779999999987533 33456778889999988743221 12111 12333344555542
Q ss_pred CCCceEEEEe
Q psy12591 101 KPRARGLFKR 110 (144)
Q Consensus 101 ~~~arvii~~ 110 (144)
.++..+|++.
T Consensus 195 ~~~~~ai~~~ 204 (293)
T 2iks_A 195 HPMPQALFTT 204 (293)
T ss_dssp SCCCSEEEES
T ss_pred CCCCCEEEEC
Confidence 2456677654
No 80
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=76.42 E-value=6.1 Score=30.63 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=47.6
Q ss_pred HHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 33 MVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 33 ~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.++++ +| +++.+|+++..... +..+.+.+.|+ |+++.......+++ +.+.+.+.+..++ ..+++.||...
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavG 114 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNP---AYETLMNAVKLVR-EQKVTFLLAVG 114 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSC---BHHHHHHHHHHHH-HHTCCEEEEEE
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCc---CHHHHHHHHHHHH-HcCCCEEEEeC
Confidence 445556 67 88888886543433 26777888886 77754434444443 4677888888888 56788888775
Q ss_pred E
Q psy12591 112 K 112 (144)
Q Consensus 112 ~ 112 (144)
.
T Consensus 115 G 115 (408)
T 1oj7_A 115 G 115 (408)
T ss_dssp S
T ss_pred C
Confidence 4
No 81
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=76.12 E-value=8.1 Score=29.55 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=49.6
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.+|.+++.+|++...+ +..+.+.+.|++.++.+ + ..+.+++ +.+...+.+..++ ..+++.||-..
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavG 97 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMHV---PIESARDATARAR-EAGADCAVAVG 97 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTC---BHHHHHHHHHHHH-HHTCSEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCCC---CHHHHHHHHHHhh-ccCCCEEEEeC
Confidence 45667888999999999876544 35677888888776433 2 3333343 3667778888887 56788888765
No 82
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=75.44 E-value=12 Score=26.59 Aligned_cols=87 Identities=6% Similarity=0.062 Sum_probs=50.1
Q ss_pred eEEecCCchHHHHHHHHHHHh-C-CCc-----EEEEEEEeCC--cchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcch
Q psy12591 19 FTRTIPSDHHQVKAMVEIVKK-L-GWS-----YVSIIYEESN--YGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEE 88 (144)
Q Consensus 19 ffRt~p~d~~~~~a~~~ll~~-f-~W~-----~Vaii~~~~~--~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~ 88 (144)
+......+...+..+++.|.. + |-+ +|+++..... ......+.|.+.+++. |+.+.... ..+. +.
T Consensus 105 ~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~--~~~~---~~ 179 (293)
T 3l6u_A 105 VSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSV--SGNY---DP 179 (293)
T ss_dssp SEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEE--ECTT---CH
T ss_pred eeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeec--cCCC---CH
Confidence 334455555566677776644 5 555 9999975432 3345678889999998 98876542 2121 12
Q ss_pred hhHHHHHHHHh-cCCCceEEEEe
Q psy12591 89 TAYDDIVLKLL-TKPRARGLFKR 110 (144)
Q Consensus 89 ~~~~~~l~~lk-~~~~arvii~~ 110 (144)
......+.++. ..++..+|++.
T Consensus 180 ~~~~~~~~~~l~~~~~~~ai~~~ 202 (293)
T 3l6u_A 180 VTSERVMRQVIDSGIPFDAVYCH 202 (293)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEES
T ss_pred HHHHHHHHHHHHhCCCCCEEEEC
Confidence 33333444443 23556677654
No 83
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=75.34 E-value=7.4 Score=27.95 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=10.6
Q ss_pred CcchHHHHHHHHHhhhCceEEE
Q psy12591 53 NYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 53 ~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|+....+.+++.+++.|+.+.
T Consensus 17 ~~~~~~~~gi~~~a~~~g~~~~ 38 (305)
T 3g1w_A 17 DYWKRCLKGFEDAAQALNVTVE 38 (305)
T ss_dssp THHHHHHHHHHHHHHHHTCEEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEE
Confidence 3444444555555555554443
No 84
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=75.26 E-value=13 Score=27.42 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=10.6
Q ss_pred cchHHHHHHHHHhhhCceEEEE
Q psy12591 54 YGVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 54 ~g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
|.....+.+++.+++.|+.+..
T Consensus 21 f~~~~~~Gi~~~~~~~g~~~~~ 42 (318)
T 2fqx_A 21 FNQQVWEGISRFAQENNAKCKY 42 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEE
Confidence 4444445555555555554433
No 85
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=75.23 E-value=6 Score=28.29 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=37.4
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEe--CCcchHHHHHHHHHhhhCceEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEE--SNYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V 73 (144)
...++...+..+++.|...|.++|+++... ........+.|.+.+++.|+.+
T Consensus 105 V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (290)
T 3clk_A 105 ISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAI 158 (290)
T ss_dssp EECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred EEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCC
Confidence 444445556677787777799999999754 2345567788999999988754
No 86
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=75.22 E-value=13 Score=26.36 Aligned_cols=67 Identities=9% Similarity=0.229 Sum_probs=43.8
Q ss_pred HhCCCcEEEEEEEe--CCcchHHHHHHHHHhhhCceE-EEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 38 KKLGWSYVSIIYEE--SNYGVKAFEELEVLLAKYSIC-IAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 38 ~~f~W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~-V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.-+-..|+++..+ +.|.....+.+++.+++.|.. +.... ... +...-...++.+. ..+.+.||+..
T Consensus 6 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~---~~~~~~~~~~~l~-~~~vdgiIi~~ 75 (277)
T 3hs3_A 6 YQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFS---TNS---DVKKYQNAIINFE-NNNVDGIITSA 75 (277)
T ss_dssp --CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSC---CHHHHHHHHHHHH-HTTCSEEEEEC
T ss_pred hcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEe---CCC---ChHHHHHHHHHHH-hCCCCEEEEcc
Confidence 33345678888764 567888899999999999988 54321 111 1334455677776 46788887764
No 87
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=75.15 E-value=9.7 Score=28.09 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHhCCCcEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 36 IVKKLGWSYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 36 ll~~f~W~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
|.++||.+.+++... +.+-+..-...+.+.++++++.+.+.+..... +.++.|....+++++.+.
T Consensus 192 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----------~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 192 LAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP----------KIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp HHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT----------HHHHHHHHTTTCEEEECC
T ss_pred HHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh----------HHHHHHHHHhCCeEEEec
Confidence 457899998887643 33555566777888888999877766543322 122334335678887654
No 88
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=75.13 E-value=16 Score=25.97 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=36.7
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
....+...+..+++.|...|.++|+++..... ......+.|.+.+++.|+.+.
T Consensus 104 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 158 (285)
T 3c3k_A 104 VSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS 158 (285)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce
Confidence 34444445567777776679999999986543 344566778888888887643
No 89
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=75.02 E-value=23 Score=26.18 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=38.6
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCc---chHHHHHHHHHhhhCceEEE
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNY---GVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~---g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.....+..-+..+++.|...|.++|+++...... .....+.|.+.+++.|+.+.
T Consensus 166 ~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 222 (355)
T 3e3m_A 166 TVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPD 222 (355)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSC
T ss_pred EEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCC
Confidence 3444444555667777777899999999875432 35667889999999997653
No 90
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=74.95 E-value=8.1 Score=30.57 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.+|-+++.+|++...+. ...+.+.+.|++.|+.+.+ ..+...+ +..++.+.+..++ . +.+.||...
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~---~~~~v~~~~~~~~-~-~~D~IIAvG 153 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEA---SLVELDKLRKQCP-D-DTQVIIGVG 153 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCC---CHHHHHHHHTTSC-T-TCCEEEEEE
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCC---CHHHHHHHHHHHh-h-CCCEEEEeC
Confidence 345677778866888888755443 4678888889999987743 3344333 2456777776666 4 788888664
No 91
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=74.88 E-value=22 Score=25.88 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=37.8
Q ss_pred EEecCCchHHHHHHHHHHHhC--CCcEEEEEEEeCC--cchHHHHHHHHHhhhC-ceEEEE
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKL--GWSYVSIIYEESN--YGVKAFEELEVLLAKY-SICIAI 75 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f--~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~-Gi~V~~ 75 (144)
....+.+...+..+++.|... |.++|+++..... ......+.|.+.+++. |+.+..
T Consensus 104 ~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~ 164 (325)
T 2x7x_A 104 AYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLID 164 (325)
T ss_dssp EEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEE
T ss_pred EEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe
Confidence 344455555666777766443 8999999986532 3445677888889888 887653
No 92
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=74.80 E-value=8.1 Score=27.49 Aligned_cols=87 Identities=15% Similarity=0.044 Sum_probs=51.8
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
.....+..-+..+++.|...|.++|+++....+ ......+.|.+.+++.|+.+.....+.... +..+....+.++
T Consensus 106 ~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 182 (289)
T 3g85_A 106 SVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAEN---SIHGGVDAAKKL 182 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCS---SHHHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCC---CHHHHHHHHHHH
Confidence 344455556677788887789999999986543 344567889999999987643211112121 123333444444
Q ss_pred hc-CCCceEEEEe
Q psy12591 99 LT-KPRARGLFKR 110 (144)
Q Consensus 99 k~-~~~arvii~~ 110 (144)
.. .++..+|++.
T Consensus 183 l~~~~~~~ai~~~ 195 (289)
T 3g85_A 183 MKLKNTPKALFCN 195 (289)
T ss_dssp TTSSSCCSEEEES
T ss_pred HcCCCCCcEEEEc
Confidence 42 3456667653
No 93
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=73.81 E-value=11 Score=25.41 Aligned_cols=62 Identities=23% Similarity=0.178 Sum_probs=38.7
Q ss_pred EEEEEEEeCCc--c---hHHHHHHHHH----hhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEESNY--G---VKAFEELEVL----LAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~~~~--g---~~~~~~~~~~----l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+++||...|+- | ......+... +++.|+.+.....++++ ...+.+.|++.. ..++++||...
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd-----~~~I~~~l~~a~-~~~~DlVittG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG-----YDTVVEAIATAL-KQGARFIITAG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS-----HHHHHHHHHHHH-HTTCSEEEEES
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC-----HHHHHHHHHHHH-hCCCCEEEECC
Confidence 57777765432 2 1245667788 88999988777667654 567777777765 23478887664
No 94
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=73.68 E-value=5.1 Score=29.44 Aligned_cols=52 Identities=10% Similarity=-0.018 Sum_probs=36.4
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V 73 (144)
....+..-+..+++.|...|.++|+++....+ ......+.|.+.+++.|+.+
T Consensus 160 V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 213 (332)
T 2o20_A 160 VNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEF 213 (332)
T ss_dssp EECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 33444445566777777779999999976532 34456778889999999754
No 95
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=73.39 E-value=9.7 Score=27.73 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=10.0
Q ss_pred CcchHHHHHHHHHhhhCceEE
Q psy12591 53 NYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 53 ~~g~~~~~~~~~~l~~~Gi~V 73 (144)
.|.....+.+++.+++.|+.+
T Consensus 20 ~f~~~~~~gi~~~~~~~g~~~ 40 (296)
T 2hqb_A 20 GWNRKAYEGLLNIHSNLDVDV 40 (296)
T ss_dssp CCTHHHHHHHHHHHHHSCCEE
T ss_pred cHHHHHHHHHHHHHHHhCCeE
Confidence 344444444555555555444
No 96
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=73.31 E-value=16 Score=26.65 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=46.6
Q ss_pred HHHHHHHHHh-C-CCcEEEEEEEeCCcc-hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceE
Q psy12591 30 VKAMVEIVKK-L-GWSYVSIIYEESNYG-VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106 (144)
Q Consensus 30 ~~a~~~ll~~-f-~W~~Vaii~~~~~~g-~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arv 106 (144)
....+++++. + +-++|+++++.++-+ ....+.+++.+++.|+.+...... ...++...++.+. .+..+
T Consensus 126 ~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~-------~~~~~~~~~~~l~--~~~d~ 196 (302)
T 3lkv_A 126 VEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL-------KSADVQSATQAIA--EKSDV 196 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS-------SGGGHHHHHHHHH--TTCSE
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecC-------ChHHHHHHHHhcc--CCeeE
Confidence 3445666654 3 689999999766543 456778888899999987643321 1345667777776 34556
Q ss_pred EEE
Q psy12591 107 LFK 109 (144)
Q Consensus 107 ii~ 109 (144)
+++
T Consensus 197 i~~ 199 (302)
T 3lkv_A 197 IYA 199 (302)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 97
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=72.99 E-value=17 Score=26.03 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=37.7
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCc--chHHHHHHHHHhhhCceEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNY--GVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~Gi~V 73 (144)
....+..-+..+++.|...|-++|+++...... .....+.|.+.+++.|+.+
T Consensus 106 V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 159 (294)
T 3qk7_A 106 FDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMP 159 (294)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred EEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCC
Confidence 444455556677777777899999999876433 3456788899999998764
No 98
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=72.66 E-value=5.2 Score=29.62 Aligned_cols=44 Identities=9% Similarity=0.122 Sum_probs=29.8
Q ss_pred HHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591 36 IVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKL 79 (144)
Q Consensus 36 ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~ 79 (144)
|.++||.+.+++...+.+.+..-...+.+.+++.++.+.+.+..
T Consensus 203 f~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~ 246 (291)
T 1pq4_A 203 FARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQ 246 (291)
T ss_dssp HHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETT
T ss_pred HHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45688888887765444555556667777788888776666544
No 99
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=72.41 E-value=13 Score=27.33 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHhCCCcEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591 36 IVKKLGWSYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK 109 (144)
Q Consensus 36 ll~~f~W~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~ 109 (144)
|.++||.+.+++... ..+.+..-...+.+.++++++.+.+.+..... +.++.|.+..+++++.+
T Consensus 187 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----------~~~~~ia~~~g~~v~~l 252 (284)
T 2prs_A 187 FEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRP----------AVVESVARGTSVRMGTL 252 (284)
T ss_dssp HHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCS----------HHHHHHTTTSCCEEEEC
T ss_pred HHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh----------HHHHHHHHHcCCeEEEe
Confidence 456889988887754 34556666777888889999887776644322 23334443567887653
No 100
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=72.26 E-value=11 Score=25.81 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=40.5
Q ss_pred EEEEEEEeCCc--c---hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEESNY--G---VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~~~~--g---~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+++||...|+- | ......+.+.+++.|+.+.....++.+ ...+.+.|.+.. .++++||...
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd-----~~~I~~~l~~a~--~~~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD-----LDEIGWAFRVAL--EVSDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHH--HHCSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC-----HHHHHHHHHHHH--hcCCEEEEcC
Confidence 56777665431 2 245667888888899888777767654 456777776665 2377777654
No 101
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=71.51 E-value=11 Score=27.15 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=6.8
Q ss_pred hHHHHHHHHHhhhCce
Q psy12591 56 VKAFEELEVLLAKYSI 71 (144)
Q Consensus 56 ~~~~~~~~~~l~~~Gi 71 (144)
....+.+++.+++.|.
T Consensus 17 ~~i~~gi~~~l~~~gy 32 (295)
T 3lft_A 17 DLIYKGIQDGLAEEGY 32 (295)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3344444444444443
No 102
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=71.50 E-value=28 Score=25.92 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=42.7
Q ss_pred HHHHhCCCcEEEEEE--EeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEE-EEee
Q psy12591 35 EIVKKLGWSYVSIIY--EESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL-FKRL 111 (144)
Q Consensus 35 ~ll~~f~W~~Vaii~--~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvi-i~~~ 111 (144)
-|.++||.+.+++.. .+.+.+..-...+.+.++++++...+.+.-... +.++.|.+..++++. +++.
T Consensus 202 Yfa~~yGl~~~~~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~----------k~~~~ia~e~g~~v~~~l~~ 271 (307)
T 3ujp_A 202 YLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD----------KGQKQVAQATGARFGGNLYV 271 (307)
T ss_dssp HHHHHTTCEEEEEESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCS----------HHHHHTTTTTCCEEEEEECS
T ss_pred HHHHHCCCcEEEeeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCCh----------HHHHHHHHHhCCceeeeeec
Confidence 355789998876653 234556666777888888889876666543211 344555545677764 3444
Q ss_pred EEe
Q psy12591 112 KLV 114 (144)
Q Consensus 112 ~~~ 114 (144)
..+
T Consensus 272 d~l 274 (307)
T 3ujp_A 272 DSL 274 (307)
T ss_dssp SCC
T ss_pred cCC
Confidence 333
No 103
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=71.16 E-value=8.3 Score=27.63 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=36.7
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeC-C--cchHHHHHHHHHhhhCceEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEES-N--YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~-~--~g~~~~~~~~~~l~~~Gi~V 73 (144)
....+..-+..+++.|...|.++|+++.... + ......+.|.+.+++.|+.+
T Consensus 113 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 167 (289)
T 2fep_A 113 VAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPF 167 (289)
T ss_dssp EECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCC
T ss_pred EEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCC
Confidence 4444455566777877777999999998654 3 23456778888999988754
No 104
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=70.94 E-value=10 Score=28.92 Aligned_cols=61 Identities=10% Similarity=0.158 Sum_probs=40.1
Q ss_pred cEEEEEEEe----CCcchHHHHHHHHHhhhCc--eEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 43 SYVSIIYEE----SNYGVKAFEELEVLLAKYS--ICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 43 ~~Vaii~~~----~~~g~~~~~~~~~~l~~~G--i~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
.+|++|+.+ ..|.....+.+++..++.| +.+.+.+..+. ..++...|+.+. ..+.++||+.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~------~~d~~~~l~~l~-~~g~d~Ii~~ 93 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAE------GADAERSIKRIA-RAGNKLIFTT 93 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCT------THHHHHHHHHHH-HTTCSEEEEC
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCC------HHHHHHHHHHHH-HCCCCEEEEC
Confidence 578888753 2466667777777777777 77665554332 235667777777 4677777653
No 105
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=70.91 E-value=24 Score=24.77 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=51.7
Q ss_pred eEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHH
Q psy12591 19 FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVL 96 (144)
Q Consensus 19 ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~ 96 (144)
+.....++...+..+++.|...|.++|+++..... ......+.|.+.+++.|+.+. . +..+. +..+-...+.
T Consensus 95 ~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~--~~~~~---~~~~~~~~~~ 168 (277)
T 3cs3_A 95 IRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE-I--IQGDF---TEPSGYAAAK 168 (277)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE-E--EECCS---SHHHHHHHHH
T ss_pred CCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee-E--EeCCC---ChhHHHHHHH
Confidence 33344455555666778777779999999986533 234567788889999997765 1 22111 1233334555
Q ss_pred HHhcC--CCceEEEEe
Q psy12591 97 KLLTK--PRARGLFKR 110 (144)
Q Consensus 97 ~lk~~--~~arvii~~ 110 (144)
++.+. ++.++|++.
T Consensus 169 ~~l~~~~~~~~ai~~~ 184 (277)
T 3cs3_A 169 KILSQPQTEPVDVFAF 184 (277)
T ss_dssp HHTTSCCCSSEEEEES
T ss_pred HHHhcCCCCCcEEEEc
Confidence 55422 456777654
No 106
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=70.89 E-value=26 Score=26.17 Aligned_cols=73 Identities=10% Similarity=0.012 Sum_probs=46.2
Q ss_pred HHHhCCCcEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH---hcCCCceEE-EE
Q psy12591 36 IVKKLGWSYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL---LTKPRARGL-FK 109 (144)
Q Consensus 36 ll~~f~W~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l---k~~~~arvi-i~ 109 (144)
+.++||.+.+++... +.+.+..-...+.+.++++++.+.+.+..... .....|.+. + ..++++. ++
T Consensus 210 fa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~~la~~~~A~-e~gv~v~~~l 281 (313)
T 1toa_A 210 FSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPH-------KNVEALRDAVQAR-GHVVQIGGEL 281 (313)
T ss_dssp HHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCT-------HHHHHHHHHHHTT-TCCCEEEEEE
T ss_pred HHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHHHHHccchhh-hcCCceeeee
Confidence 457899999888753 34566667778888899999887776654322 233344333 4 5778764 34
Q ss_pred eeEEeee
Q psy12591 110 RLKLVKD 116 (144)
Q Consensus 110 ~~~~~~~ 116 (144)
+...+..
T Consensus 282 ~~d~l~~ 288 (313)
T 1toa_A 282 FSDAMGD 288 (313)
T ss_dssp CSSSCCC
T ss_pred eccCCCC
Confidence 4444433
No 107
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=70.83 E-value=14 Score=28.03 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=47.3
Q ss_pred cEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchh
Q psy12591 43 SYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEE 122 (144)
Q Consensus 43 ~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~ 122 (144)
-.|+++..... +...+...+.++|+-++....+-..+ -.+.++.+.|+-+.+.++.++|+++.. -+|..++
T Consensus 169 G~vgivSqSG~----l~~~i~~~~~~~g~G~S~~VsiGn~~--~~d~~~~D~l~~~~~Dp~T~~I~l~gE---i~g~~e~ 239 (334)
T 3mwd_B 169 GSVAYVSRSGG----MSNELNNIISRTTDGVYEGVAIGGDR--YPGSTFMDHVLRYQDTPGVKMIVVLGE---IGGTEEY 239 (334)
T ss_dssp CSEEEEESCHH----HHHHHHHHHHHHSSCEEEEEECCSSS--SCSSCHHHHHHHHHTCTTCCEEEEEEE---SSSSHHH
T ss_pred CCEEEEeCchH----HHHHHHHHHHhcCCCeEEEEECCCCc--cCCCCHHHHHHHHhcCCCCCEEEEEEe---cCChHHH
Confidence 35666654332 33445556666776666655554431 025678888888887788999999854 3566654
Q ss_pred hhhHHH
Q psy12591 123 TAYDDI 128 (144)
Q Consensus 123 ~~~~~~ 128 (144)
.+...+
T Consensus 240 ~~~~~~ 245 (334)
T 3mwd_B 240 KICRGI 245 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 108
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=70.46 E-value=10 Score=27.01 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=49.1
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
....+...+..+++.|...|.++|+++..... ......+.|.+.+++.|+.+.....+..+. +..+-...+.++.
T Consensus 105 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~l 181 (287)
T 3bbl_A 105 VDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEG---TFEVGRAMTLHLL 181 (287)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS---SHHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCC---CHHHHHHHHHHHH
Confidence 33444445566777766669999999986533 344567788889999887543111111111 1233334555554
Q ss_pred c--CC-CceEEEEe
Q psy12591 100 T--KP-RARGLFKR 110 (144)
Q Consensus 100 ~--~~-~arvii~~ 110 (144)
+ .+ +.++|++.
T Consensus 182 ~~~~~~~~~ai~~~ 195 (287)
T 3bbl_A 182 DLSPERRPTAIMTL 195 (287)
T ss_dssp TSCTTTSCSEEEES
T ss_pred hhCCCCCCcEEEEC
Confidence 2 23 56777654
No 109
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=70.27 E-value=15 Score=26.66 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=4.5
Q ss_pred HHHHHhCCCc
Q psy12591 34 VEIVKKLGWS 43 (144)
Q Consensus 34 ~~ll~~f~W~ 43 (144)
-+.++..||+
T Consensus 26 ~~~a~~~g~~ 35 (330)
T 3uug_A 26 VKQLQEAGYK 35 (330)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHcCCE
Confidence 3344445553
No 110
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=69.95 E-value=6.6 Score=29.00 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=49.2
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeC--C-cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEES--N-YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~--~-~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
....+..-+..+++.|...|.++|+++.... + ....-.+.|.+.+++.|+.+.....+.... +...-...+.++
T Consensus 165 V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l 241 (344)
T 3kjx_A 165 VGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGS---ALAKGREMTQAM 241 (344)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCC---CHHHHHHHHHHH
T ss_pred EEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCC---CHHHHHHHHHHH
Confidence 3344444556677777667999999998653 2 234566788999999997654332222221 122222333333
Q ss_pred -hcCCCceEEEEe
Q psy12591 99 -LTKPRARGLFKR 110 (144)
Q Consensus 99 -k~~~~arvii~~ 110 (144)
+..++..+|++.
T Consensus 242 l~~~~~~~ai~~~ 254 (344)
T 3kjx_A 242 LERSPDLDFLYYS 254 (344)
T ss_dssp HHHSTTCCEEEES
T ss_pred HhcCCCCCEEEEC
Confidence 223467777754
No 111
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=69.92 E-value=21 Score=26.06 Aligned_cols=64 Identities=8% Similarity=0.051 Sum_probs=43.0
Q ss_pred CCcEEEEEEEe----CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 41 GWSYVSIIYEE----SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 41 ~W~~Vaii~~~----~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.-..|+++..+ +.|+......+++.+++.|..+..... .. +.......++.+. ..+.+.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~----~~~~~~~~~~~l~-~~~vdgiIi~~ 127 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG--KH----SAEEERQAIQYLL-DLRCDAIMIYP 127 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC--TT----SHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC--CC----ChHHHHHHHHHHH-hCCCCEEEEeC
Confidence 34578888764 467788899999999999988765431 11 1233445666666 46778777754
No 112
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=69.90 E-value=15 Score=26.21 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=4.4
Q ss_pred HHHHHhCCCc
Q psy12591 34 VEIVKKLGWS 43 (144)
Q Consensus 34 ~~ll~~f~W~ 43 (144)
-+.++..||+
T Consensus 25 ~~~a~~~g~~ 34 (306)
T 8abp_A 25 DKAGKDLGFE 34 (306)
T ss_dssp HHHHHHHTEE
T ss_pred HHHHHHcCCE
Confidence 3344444543
No 113
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=69.62 E-value=22 Score=24.57 Aligned_cols=66 Identities=6% Similarity=0.002 Sum_probs=43.1
Q ss_pred CCcEEEEEEEeCCc--c---hHHHHHHHHHhhh---CceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 41 GWSYVSIIYEESNY--G---VKAFEELEVLLAK---YSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 41 ~W~~Vaii~~~~~~--g---~~~~~~~~~~l~~---~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.=-+++||...|+- | ......+...+++ .|+.+.....++++ .+.+.+.|.+..+..++++||...
T Consensus 13 ~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd-----~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE-----IEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC-----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC-----HHHHHHHHHHHhhcCCCCEEEEcC
Confidence 33478888765541 1 2345667888887 78888777667654 567777777665223688887764
No 114
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=69.53 E-value=17 Score=25.74 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=36.1
Q ss_pred cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+.|+++..+ +.|+....+.+++.+++.|..+.....- . +...-...++.+. ..+++.||+..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~----~~~~~~~~~~~l~-~~~vdgiIi~~ 79 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN--N----NPDNERRGLENLL-SQHIDGLIVEP 79 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT--T----CHHHHHHHHHHHH-HTCCSEEEECC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC--C----ChHHHHHHHHHHH-HCCCCEEEEec
Confidence 567777643 4566777777777777777766543211 1 1233345555555 45666666543
No 115
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=69.42 E-value=3.8 Score=30.16 Aligned_cols=50 Identities=6% Similarity=-0.077 Sum_probs=36.1
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEE
Q psy12591 25 SDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 25 ~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.+...+..+++.|...|.++|+++..... ......+.|.+.+++.|+.+.
T Consensus 155 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 206 (330)
T 3ctp_A 155 DNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID 206 (330)
T ss_dssp CHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc
Confidence 33444566777776779999999986543 345567888899999997654
No 116
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=69.13 E-value=10 Score=27.15 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=36.2
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V 73 (144)
....+...+..+++.|...|.++|+++..... ......+.|.+.+++.|+.+
T Consensus 108 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 161 (290)
T 2rgy_A 108 FCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGIAR 161 (290)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCG
T ss_pred EEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 34444445567777776779999999986533 33456777888999888653
No 117
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=69.07 E-value=9.5 Score=28.00 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=49.9
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
....+..-+..+++.|...|.++|+++....+ ......+.|.+.+++.|+.+.....+.... +...-...+.++.
T Consensus 161 V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~ll 237 (338)
T 3dbi_A 161 VWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKW---TPASGAEGVEMLL 237 (338)
T ss_dssp ECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCS---SHHHHHHHHHHHH
T ss_pred EEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCC---CHHHHHHHHHHHH
Confidence 44455555666777777789999999976432 344567788999999997653211111111 1223333344443
Q ss_pred -cCCCceEEEEe
Q psy12591 100 -TKPRARGLFKR 110 (144)
Q Consensus 100 -~~~~arvii~~ 110 (144)
..++..+|++.
T Consensus 238 ~~~~~~~ai~~~ 249 (338)
T 3dbi_A 238 ERGAKFSALVAS 249 (338)
T ss_dssp HTTCCCSEEEES
T ss_pred cCCCCCeEEEEC
Confidence 24556677654
No 118
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=68.87 E-value=29 Score=24.75 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEEEeCCc--chHHHHHHHHHhhhCceEEE
Q psy12591 25 SDHHQVKAMVEIVKKLGWSYVSIIYEESNY--GVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 25 ~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.+..-+..+++.|...|.++|+++...... .....+.|.+.+++.|+.+.
T Consensus 114 D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 165 (295)
T 3hcw_A 114 DNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ 165 (295)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee
Confidence 344455666777766799999999865433 34567889999999998765
No 119
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=68.77 E-value=18 Score=25.44 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=17.4
Q ss_pred cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEE
Q psy12591 43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
..|+++..+ +.|.......+++.+++.|+.+..
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~ 42 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVL 42 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEE
Confidence 345555432 335555556666666666655543
No 120
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=68.68 E-value=24 Score=24.90 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=50.5
Q ss_pred EecCCchHHHHHHHHHHHh--CCCcEEEEEEEeCCc--chHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHHHHH
Q psy12591 21 RTIPSDHHQVKAMVEIVKK--LGWSYVSIIYEESNY--GVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYDDIV 95 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~--f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~~~l 95 (144)
.....+...+..+++.|.. .|-++|+++....+. .....+.|.+.+++. |+++.....+..... +.......+
T Consensus 102 ~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 179 (291)
T 3l49_A 102 NTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPN--TIQSAYSNV 179 (291)
T ss_dssp EEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSS--HHHHHHHHH
T ss_pred eEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCC--CHHHHHHHH
Confidence 3444555566777777766 899999999754332 334577888899888 677543332222211 122333344
Q ss_pred HHHh-cCC---CceEEEEe
Q psy12591 96 LKLL-TKP---RARGLFKR 110 (144)
Q Consensus 96 ~~lk-~~~---~arvii~~ 110 (144)
.++. ..+ +..+|++.
T Consensus 180 ~~~l~~~~~~~~~~ai~~~ 198 (291)
T 3l49_A 180 TDMLTKYPNEGDVGAIWAC 198 (291)
T ss_dssp HHHHHHCCSTTSCCEEEES
T ss_pred HHHHHhCCCcCCcCEEEEC
Confidence 4443 234 56777654
No 121
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=68.42 E-value=13 Score=27.22 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHhCCCcEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591 36 IVKKLGWSYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK 109 (144)
Q Consensus 36 ll~~f~W~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~ 109 (144)
|.++||.+.+++... ..+.+..-...+.+.++++++.+.+.+..... +.++.|....+++++.+
T Consensus 190 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----------~~~~~ia~~~g~~v~~l 255 (284)
T 3cx3_A 190 LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASS----------KVAETLVKSTGVGLKTL 255 (284)
T ss_dssp HHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCC----------HHHHHHHSSSSCCEEEC
T ss_pred HHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc----------HHHHHHHHHcCCeEEEe
Confidence 457899998888753 34556667778888899999887666544322 23334444577887755
No 122
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=68.31 E-value=19 Score=25.86 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=36.5
Q ss_pred cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
..|+++..+ +.|.....+.+++.+++.|..+.....- . +.......++.+. ..+.+.||+..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~----~~~~~~~~~~~l~-~~~vdgiI~~~ 79 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID--A----PPRGTQQLSRLVS-EGRVDGVLLQR 79 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC--S----TTHHHHHHHHHHH-SCSSSEEEECC
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC--C----ChHHHHHHHHHHH-hCCCcEEEEec
Confidence 457777643 4567777777888888888766543211 1 1233445666666 56677776654
No 123
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=68.22 E-value=13 Score=26.59 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=4.6
Q ss_pred HHHHHhCCCc
Q psy12591 34 VEIVKKLGWS 43 (144)
Q Consensus 34 ~~ll~~f~W~ 43 (144)
-+.++..||+
T Consensus 27 ~~~~~~~g~~ 36 (303)
T 3d02_A 27 VQAGKEFNLN 36 (303)
T ss_dssp HHHHHHTTEE
T ss_pred HHHHHHcCCE
Confidence 3344455543
No 124
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=68.19 E-value=28 Score=24.42 Aligned_cols=83 Identities=8% Similarity=0.145 Sum_probs=50.6
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC-c--chHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN-Y--GVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~-~--g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
...++..-+..+++.|...|-++|+++..... + .....+.|.+.+++.|. +. +..... ..+..+....+.|
T Consensus 103 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~~~-~~----~~~~~~-~~~~~~~~~~~~l 176 (276)
T 3jy6_A 103 VVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDVDV-LE----VSESSY-NHSEVHQRLTQLI 176 (276)
T ss_dssp EECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEE-EE----ECSSSC-CHHHHHHHHHHHH
T ss_pred EEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhCCc-EE----Eecccc-CCcHHHHHHHHHH
Confidence 44455556677788887889999999987654 3 24466778888877764 21 111100 1133555555556
Q ss_pred hcCCCceEEEEe
Q psy12591 99 LTKPRARGLFKR 110 (144)
Q Consensus 99 k~~~~arvii~~ 110 (144)
+..++..+|++.
T Consensus 177 ~~~~~~~ai~~~ 188 (276)
T 3jy6_A 177 TQNDQKTVAFAL 188 (276)
T ss_dssp HSSSSCEEEEES
T ss_pred hcCCCCcEEEEe
Confidence 544667777764
No 125
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=67.97 E-value=7.8 Score=28.39 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeC-C--cchHHHHHHHHHhhhCceEE
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEES-N--YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~-~--~g~~~~~~~~~~l~~~Gi~V 73 (144)
..+..-+..+++.|...|.++|+++.... + ......+.|.+.+++.|+.+
T Consensus 159 ~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 211 (332)
T 2hsg_A 159 IDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPV 211 (332)
T ss_dssp ECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCC
T ss_pred EChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 34444456667777777999999998654 3 23456778889999998754
No 126
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=67.78 E-value=19 Score=26.55 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=39.4
Q ss_pred CcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 42 WSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 42 W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
-..|+++..+ +.|.......+++.+++.|+.+..... ... ........+..+. ..+.+.||+.
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~---~~~~~~~~l~~l~-~~~vdGiIi~ 125 (349)
T 1jye_A 61 SLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV--ERS---GVEACKTAVHNLL-AQRVSGLIIN 125 (349)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC--CSS---SHHHHHHHHHHHH-TTTCSCEEEE
T ss_pred CCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC--CCC---cHHHHHHHHHHHH-HCCCCEEEEe
Confidence 3568888754 456677888889999999987764321 111 0223345666666 4667777765
No 127
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=67.61 E-value=12 Score=27.74 Aligned_cols=43 Identities=16% Similarity=-0.001 Sum_probs=31.0
Q ss_pred HHHhCCCcEEEEEE--EeCCcchHHHHHHHHHhhhCceEEEEEec
Q psy12591 36 IVKKLGWSYVSIIY--EESNYGVKAFEELEVLLAKYSICIAIKEK 78 (144)
Q Consensus 36 ll~~f~W~~Vaii~--~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~ 78 (144)
|.++||.+.+++.. ...+-+..-...+.+.++++++...+.+.
T Consensus 196 f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~ 240 (294)
T 3hh8_A 196 FSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVES 240 (294)
T ss_dssp HHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEET
T ss_pred HHHHcCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45789999888764 23456666778888899999986555544
No 128
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=67.61 E-value=8.6 Score=26.99 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=4.0
Q ss_pred HHHHHhCCC
Q psy12591 34 VEIVKKLGW 42 (144)
Q Consensus 34 ~~ll~~f~W 42 (144)
.+.++..||
T Consensus 23 ~~~~~~~g~ 31 (276)
T 3ksm_A 23 QKAADEAGV 31 (276)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 334444455
No 129
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=67.32 E-value=11 Score=27.00 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=12.3
Q ss_pred CCcchHHHHHHHHHhhhCceEEE
Q psy12591 52 SNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 52 ~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
+.|+....+.+++.+++.|+.+.
T Consensus 15 ~~~~~~~~~gi~~~a~~~g~~~~ 37 (297)
T 3rot_A 15 DPYWTSLFQGAKKAAEELKVDLQ 37 (297)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CchHHHHHHHHHHHHHHhCcEEE
Confidence 34455555555555555555544
No 130
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=67.10 E-value=28 Score=24.71 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=33.5
Q ss_pred CcEEEEEEE-eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 42 WSYVSIIYE-ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 42 W~~Vaii~~-~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
-..|+++.+ ++.|.....+.+++.+++.|..+.....- .. .. -...+..+. ..+.+.||+..
T Consensus 12 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~----~~-~~~~~~~l~-~~~vdgiIi~~ 74 (289)
T 3k9c_A 12 SRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVA--PS----RA-EKVAVQALM-RERCEAAILLG 74 (289)
T ss_dssp -CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEB--TT----BC-HHHHHHHHT-TTTEEEEEEET
T ss_pred CCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCC--CC----HH-HHHHHHHHH-hCCCCEEEEEC
Confidence 345666662 13455666777777777777666543211 11 11 345555565 45666666654
No 131
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=66.61 E-value=21 Score=25.17 Aligned_cols=21 Identities=0% Similarity=-0.002 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHHhhhCceEE
Q psy12591 53 NYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 53 ~~g~~~~~~~~~~l~~~Gi~V 73 (144)
.|.....+.+++.+++.|..+
T Consensus 26 ~~~~~~~~gi~~~a~~~g~~~ 46 (292)
T 3k4h_A 26 PFFPEVIRGISSFAHVEGYAL 46 (292)
T ss_dssp THHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHcCCEE
Confidence 344455555555555555544
No 132
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=66.45 E-value=14 Score=27.04 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhc-
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLT- 100 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~- 100 (144)
..+..-+..+++.|...|.++|+++....+ ......+.|.+.+++.|+.+.....+..+. +...-...+.++.+
T Consensus 159 ~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~---~~~~~~~~~~~ll~~ 235 (340)
T 1qpz_A 159 DNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDF---EPESGYRAMQQILSQ 235 (340)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCS---SHHHHHHHHHHHHTS
T ss_pred ECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCC---CHHHHHHHHHHHHcC
Confidence 333444566677666669999999975433 344567788899999987543211111111 12233344445442
Q ss_pred CCCceEEEEe
Q psy12591 101 KPRARGLFKR 110 (144)
Q Consensus 101 ~~~arvii~~ 110 (144)
.++..+|++.
T Consensus 236 ~~~~~ai~~~ 245 (340)
T 1qpz_A 236 PHRPTAVFCG 245 (340)
T ss_dssp SSCCSEEEES
T ss_pred CCCCcEEEEC
Confidence 2456677654
No 133
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=66.22 E-value=16 Score=25.57 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=15.0
Q ss_pred EEEEEEEe--CCcchHHHHHHHHHhhhCceEEE
Q psy12591 44 YVSIIYEE--SNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 44 ~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|+++..+ +.|+....+.+++.+++.|..+.
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 36 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARARGYQLL 36 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEE
Confidence 34444432 23444555555555555555443
No 134
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=66.14 E-value=41 Score=25.49 Aligned_cols=53 Identities=9% Similarity=-0.045 Sum_probs=38.3
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCc----chHHHHHHHHHhhhCceEEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNY----GVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~----g~~~~~~~~~~l~~~Gi~V~ 74 (144)
....+..-+..+++.|...|-++|+++...... .....+.|.+.+++.|+...
T Consensus 119 V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 175 (412)
T 4fe7_A 119 IATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGV 175 (412)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCE
T ss_pred EEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHHHHHcCCCcc
Confidence 444445556677778878899999999765432 45567889999999987643
No 135
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=65.83 E-value=26 Score=24.86 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=51.3
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCc-chHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNY-GVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~-g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
.....+..-+..+++.|...|.++|+++.....+ .....+.|.+.+++.|+.+... .+.... +...-...+.++.
T Consensus 105 ~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~---~~~~~~~~~~~~l 180 (289)
T 3k9c_A 105 AVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASAT-VVTGGT---TETEGAEGMHTLL 180 (289)
T ss_dssp EEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCS---SHHHHHHHHHHHH
T ss_pred EEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCcc-EEECCC---CHHHHHHHHHHHH
Confidence 3444555566677787777899999999765433 3456788899999998763221 122221 1333334444444
Q ss_pred c-CCCceEEEEe
Q psy12591 100 T-KPRARGLFKR 110 (144)
Q Consensus 100 ~-~~~arvii~~ 110 (144)
. .++..+|++.
T Consensus 181 ~~~~~~~ai~~~ 192 (289)
T 3k9c_A 181 EMPTPPTAVVAF 192 (289)
T ss_dssp TSSSCCSEEEES
T ss_pred cCCCCCCEEEEC
Confidence 2 3456677654
No 136
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=65.75 E-value=20 Score=25.31 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=6.5
Q ss_pred HHHHHHHhCCCc
Q psy12591 32 AMVEIVKKLGWS 43 (144)
Q Consensus 32 a~~~ll~~f~W~ 43 (144)
.+.+.++..||+
T Consensus 23 gi~~~~~~~g~~ 34 (290)
T 2fn9_A 23 TAKQRAEQLGYE 34 (290)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHcCCE
Confidence 344455566764
No 137
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=65.59 E-value=13 Score=26.28 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhhCceE
Q psy12591 57 KAFEELEVLLAKYSIC 72 (144)
Q Consensus 57 ~~~~~~~~~l~~~Gi~ 72 (144)
...+.+++.+++.|+.
T Consensus 22 ~~~~gi~~~a~~~g~~ 37 (291)
T 3l49_A 22 KAYQAQIAEIERLGGT 37 (291)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCCE
Confidence 3334444444444433
No 138
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=65.51 E-value=25 Score=24.29 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=35.3
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEEEe--C-CcchHHHHHHHHHhhhCceEE
Q psy12591 25 SDHHQVKAMVEIVKKLGWSYVSIIYEE--S-NYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 25 ~d~~~~~a~~~ll~~f~W~~Vaii~~~--~-~~g~~~~~~~~~~l~~~Gi~V 73 (144)
.+..-+..+++.|...|.++|+++... + .......+.|.+.+++.|+.+
T Consensus 98 d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~ 149 (255)
T 1byk_A 98 DDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP 149 (255)
T ss_dssp CHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCc
Confidence 344455667777767799999999754 2 234566788899999998754
No 139
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=64.94 E-value=12 Score=26.65 Aligned_cols=54 Identities=7% Similarity=0.156 Sum_probs=38.7
Q ss_pred EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEE
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V 73 (144)
.....+....+..+++.|...|-++|+++..... ......+.|.+.+++.|+.+
T Consensus 103 ~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (291)
T 3egc_A 103 GAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPV 158 (291)
T ss_dssp EEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCC
Confidence 3344455556677778887789999999976543 34456788889999988754
No 140
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=64.86 E-value=14 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=18.4
Q ss_pred EEEEEEEe--CCcchHHHHHHHHHhhhCceEEEE
Q psy12591 44 YVSIIYEE--SNYGVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 44 ~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
.|+++..+ +.|+....+.+++.+++.|+.+..
T Consensus 7 ~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~ 40 (304)
T 3o1i_D 7 KICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRV 40 (304)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEE
Confidence 45555532 345556666666666666665543
No 141
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=64.63 E-value=24 Score=24.91 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=39.1
Q ss_pred EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEE
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
.....+..-+..+++.|. .|.++|+++....+ ......+.|.+.+++.|+.+...
T Consensus 102 ~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~ 158 (277)
T 3hs3_A 102 RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE 158 (277)
T ss_dssp EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC
Confidence 344444555566677777 89999999976533 34456788999999999887654
No 142
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=63.97 E-value=20 Score=25.34 Aligned_cols=7 Identities=14% Similarity=0.192 Sum_probs=3.1
Q ss_pred HHHhCCC
Q psy12591 36 IVKKLGW 42 (144)
Q Consensus 36 ll~~f~W 42 (144)
.++..||
T Consensus 32 ~~~~~g~ 38 (289)
T 1dbq_A 32 NCFQKGY 38 (289)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 3344454
No 143
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=63.43 E-value=37 Score=24.13 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=43.2
Q ss_pred hCCCcEEEEEEEe--CCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 39 KLGWSYVSIIYEE--SNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 39 ~f~W~~Vaii~~~--~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
.-+-..|+++..+ +.|.. ...+.+++.+++.|..+..... .. +.......++.+. ..+.+.||+...
T Consensus 10 ~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~---~~~~~~~~~~~l~-~~~vdGiIi~~~ 79 (301)
T 3miz_A 10 SSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GG---SSEREVEIWKMFQ-SHRIDGVLYVTM 79 (301)
T ss_dssp --CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TT---CHHHHHHHHHHHH-HTTCSEEEEEEE
T ss_pred hCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CC---ChHHHHHHHHHHH-hCCCCEEEEecC
Confidence 3344678888754 35666 8889999999999988765431 11 1334456667776 467787777643
No 144
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=63.40 E-value=27 Score=25.39 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=15.2
Q ss_pred EEEEEEEe---CCcchHHHHHHHHHhhhCceEE
Q psy12591 44 YVSIIYEE---SNYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 44 ~Vaii~~~---~~~g~~~~~~~~~~l~~~Gi~V 73 (144)
.|+++..+ +.|.....+.+++.+++.|..+
T Consensus 45 ~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 77 (342)
T 1jx6_A 45 KISVVYPGQQVSDYWVRNIASFEKRLYKLNINY 77 (342)
T ss_dssp EEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 35555432 3445555555555555555443
No 145
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=63.39 E-value=22 Score=25.12 Aligned_cols=62 Identities=10% Similarity=0.219 Sum_probs=36.2
Q ss_pred cEEEEEEEe-CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEE-SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~-~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
..|+++..+ +.|+....+.+++.+++.|+.+.... ... +.......++.+. ..+++.||+..
T Consensus 9 ~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~---~~~~~~~~~~~l~-~~~vdgiI~~~ 71 (288)
T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS---SEE---NEDKQQDLIETFV-SQNVSAIILVP 71 (288)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE---CTT---CHHHHHHHHHHHH-HTTEEEEEECC
T ss_pred CEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe---CCC---CHHHHHHHHHHHH-HcCccEEEEec
Confidence 357777653 45666777778888888887765432 111 1233345566665 45677776654
No 146
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=63.00 E-value=16 Score=26.23 Aligned_cols=64 Identities=6% Similarity=0.137 Sum_probs=38.3
Q ss_pred CCcEEEEEEEe-------CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 41 GWSYVSIIYEE-------SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 41 ~W~~Vaii~~~-------~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+-..|+++..+ +.|.....+.+++.+++.|..+... .... +.......++.+. ..+.+.||+..
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~---~~~~~~~~~~~l~-~~~vdgiIi~~ 91 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSEN---SGDLYHEVKTMIQ-SKSVDGFILLY 91 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSS---HHHHHHHHHHHHH-TTCCSEEEESS
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCC---ChHHHHHHHHHHH-hCCCCEEEEeC
Confidence 44567777654 4466777778888888888776542 1111 1233345566666 46677776653
No 147
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=62.98 E-value=39 Score=24.63 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=43.1
Q ss_pred CCcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 41 GWSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 41 ~W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.-..|+++..+ +.|.....+.+++.+++.|..+..... .. +.......+..+. ..+.+.||+..
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~---~~~~~~~~~~~l~-~~~vdGiIi~~ 126 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS---HY---DAGQELQLLRAYL-QHRPDGVLITG 126 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC---TT---CHHHHHHHHHHHH-TTCCSEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CC---ChHHHHHHHHHHH-cCCCCEEEEeC
Confidence 34568888753 568888999999999999988764321 11 1334456677777 56788887754
No 148
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=62.61 E-value=11 Score=27.77 Aligned_cols=68 Identities=7% Similarity=-0.025 Sum_probs=42.7
Q ss_pred HHHhCCCcEEEEEE--EeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 36 IVKKLGWSYVSIIY--EESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 36 ll~~f~W~~Vaii~--~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
|.++||.+.+++.. .+.+-+..-...+.+.++++++...+.+...+ ......|.++-+..+++++++.
T Consensus 176 ~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~-------~~~~~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 176 FAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIFTESTTN-------PERMKKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp HHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBTTSC-------THHHHHHHHHHHTTSCCCEEET
T ss_pred HHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------hHHHHHHHHHHHhcCCceEEec
Confidence 55799999888653 23445566677788889999986666553321 1233444443225778888753
No 149
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=62.51 E-value=20 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=15.2
Q ss_pred EEEEEEEe--CCcchHHHHHHHHHhhhCceEEE
Q psy12591 44 YVSIIYEE--SNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 44 ~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|+++..+ +.|+......+++.+++.|..+.
T Consensus 18 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 50 (289)
T 2fep_A 18 TVGVIIPDISSIFYSELARGIEDIATMYKYNII 50 (289)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEE
Confidence 35555432 33444555555555555555443
No 150
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=62.39 E-value=37 Score=24.27 Aligned_cols=51 Identities=6% Similarity=-0.090 Sum_probs=33.5
Q ss_pred EecCCchHHHHHHHHHHHhCC---CcEEEEEEEeCC--cchHHHHHHHHHhhhCce
Q psy12591 21 RTIPSDHHQVKAMVEIVKKLG---WSYVSIIYEESN--YGVKAFEELEVLLAKYSI 71 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~f~---W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi 71 (144)
.....+...+..+++.|...| -++|+++..... ......+.|.+.+++.|.
T Consensus 104 ~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 159 (306)
T 2vk2_A 104 TVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN 159 (306)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT
T ss_pred EEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC
Confidence 344444445566677665545 789999986532 334567788899998885
No 151
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=62.38 E-value=13 Score=26.25 Aligned_cols=9 Identities=11% Similarity=-0.027 Sum_probs=4.2
Q ss_pred HHHHhCCCc
Q psy12591 35 EIVKKLGWS 43 (144)
Q Consensus 35 ~ll~~f~W~ 43 (144)
+.++..||+
T Consensus 31 ~~a~~~g~~ 39 (289)
T 3brs_A 31 MAAKEYEIK 39 (289)
T ss_dssp HHHHHHTCE
T ss_pred HHHHHcCCE
Confidence 344445553
No 152
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=62.23 E-value=23 Score=25.04 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=4.2
Q ss_pred HHHHhCCCc
Q psy12591 35 EIVKKLGWS 43 (144)
Q Consensus 35 ~ll~~f~W~ 43 (144)
+.++..||+
T Consensus 32 ~~a~~~g~~ 40 (293)
T 3l6u_A 32 AEAKANKYE 40 (293)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHcCCE
Confidence 344455553
No 153
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=61.71 E-value=37 Score=23.54 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=39.2
Q ss_pred EEEEEEEeCCc--c---hHHHHHHHHHhhhCceE--EEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEESNY--G---VKAFEELEVLLAKYSIC--IAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~~~~--g---~~~~~~~~~~l~~~Gi~--V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+++||...|+- | ......+.+.+++.|.. +.....++++ ...+.+.|.+..+..++++||...
T Consensus 5 rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd-----~~~I~~al~~a~~~~~~DlVitTG 74 (195)
T 1di6_A 5 RIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE-----QAIIEQTLCELVDEMSCHLVLTTG 74 (195)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC-----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEECC
Confidence 67888765543 2 12456678888888876 4444455544 567777777765323688887764
No 154
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=61.50 E-value=30 Score=24.35 Aligned_cols=32 Identities=3% Similarity=-0.013 Sum_probs=18.7
Q ss_pred cEEEEEEEe----CCcchHHHHHHHHHhhhCceEEE
Q psy12591 43 SYVSIIYEE----SNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 43 ~~Vaii~~~----~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
..|+++..+ +.|+....+.+++.+++.|..+.
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 55 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLL 55 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEE
Confidence 456666533 34566666667777777776654
No 155
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=61.34 E-value=40 Score=23.80 Aligned_cols=59 Identities=3% Similarity=-0.183 Sum_probs=40.1
Q ss_pred ceEEecCCchHHHHHHHHHHHhCC-----CcEEEEEEEeC--CcchHHHHHHHHHhhhCceEEEEE
Q psy12591 18 YFTRTIPSDHHQVKAMVEIVKKLG-----WSYVSIIYEES--NYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 18 ~ffRt~p~d~~~~~a~~~ll~~f~-----W~~Vaii~~~~--~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
.+....+.+...+..+++.|...+ -++|+++.... .......+.|.+.+++.|+.+...
T Consensus 107 ~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 172 (304)
T 3o1i_D 107 LKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIVDS 172 (304)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEEEC
T ss_pred eEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEEEe
Confidence 344445555556677778877777 88999996543 234556788999999999887653
No 156
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=60.94 E-value=14 Score=25.95 Aligned_cols=31 Identities=3% Similarity=0.046 Sum_probs=17.4
Q ss_pred EEEEEEEe--CCcchHHHHHHHHHhhhCceEEE
Q psy12591 44 YVSIIYEE--SNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 44 ~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|+++..+ +.|.....+.+++.+++.|..+.
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 42 (277)
T 3e61_A 10 LIGLLLPDMSNPFFTLIARGVEDVALAHGYQVL 42 (277)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 45555532 34555566666666666665554
No 157
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=60.52 E-value=39 Score=25.93 Aligned_cols=73 Identities=10% Similarity=-0.023 Sum_probs=45.4
Q ss_pred HHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhC------ceEEEEEecccCCCCCcchhhHHHHHHHHhcCCC--c---
Q psy12591 36 IVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY------SICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR--A--- 104 (144)
Q Consensus 36 ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~------Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~--a--- 104 (144)
+++.++.+++.+|++.+.+.. ..+.+.+.+++. |+.+.. ..++.+...++.+.+.+.+..++ ..+ .
T Consensus 30 ~~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~-~~~~~~~r~ 106 (393)
T 1sg6_A 30 LISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWML-SQNPPCGRD 106 (393)
T ss_dssp HHHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHH-TSSSCCCTT
T ss_pred HHHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHH-HcCCCCCCC
Confidence 346778889999887543322 566677777665 766642 33444321123567778888887 455 5
Q ss_pred eEEEEee
Q psy12591 105 RGLFKRL 111 (144)
Q Consensus 105 rvii~~~ 111 (144)
+.||...
T Consensus 107 d~iIalG 113 (393)
T 1sg6_A 107 TVVIALG 113 (393)
T ss_dssp CEEEEEE
T ss_pred CEEEEEC
Confidence 7777664
No 158
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=60.29 E-value=32 Score=26.69 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=46.6
Q ss_pred HHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCc---eEEEEee
Q psy12591 36 IVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRA---RGLFKRL 111 (144)
Q Consensus 36 ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~a---rvii~~~ 111 (144)
+++.++.+++.+|++...+. ...+.+.+.|++.|+.+... .++.+...++.+.+.+.+..+++ .+. ..||...
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~-~~~~R~d~IIAvG 131 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLE-HNYSRDVVVIALG 131 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHH-TTCCTTCEEEEEE
T ss_pred HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHh-cCCCcCcEEEEEC
Confidence 44455778988888766554 37788889999989876432 23332211236677788888773 334 5777654
No 159
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=60.19 E-value=14 Score=25.95 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=34.3
Q ss_pred cCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEE
Q psy12591 23 IPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 23 ~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
...+...+..+++.|...|.++|+++....+ ......+.|.+.+++.|+.+..
T Consensus 103 ~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 157 (277)
T 3e61_A 103 STNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM 157 (277)
T ss_dssp ---HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE
T ss_pred EechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc
Confidence 3444445567777777789999999986543 3345678889999999987654
No 160
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=60.14 E-value=18 Score=25.97 Aligned_cols=51 Identities=20% Similarity=0.094 Sum_probs=36.6
Q ss_pred cCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEE
Q psy12591 23 IPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 23 ~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V 73 (144)
...+..-+..+++.|...|-++|+++..... ......+.|.+.+++.|+.+
T Consensus 112 ~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (303)
T 3kke_A 112 ILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRS 164 (303)
T ss_dssp EECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred EECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCC
Confidence 3344445566777777789999999986543 33456788899999998765
No 161
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=59.99 E-value=28 Score=24.08 Aligned_cols=61 Identities=13% Similarity=-0.029 Sum_probs=31.2
Q ss_pred EEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.|+++..+ +.|.....+.+++.+++.|..+..... .. +.......+..+. ..+++.||+..
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~---~~~~~~~~~~~l~-~~~vdgiI~~~ 66 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES---QF---SPQLVAEHLGVLK-RRNIDGVVLFG 66 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TT---CHHHHHHHHHHHH-TTTCCEEEEEC
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC---CC---cHHHHHHHHHHHH-hcCCCEEEEec
Confidence 45666532 345556666677777777766543321 11 1222334555555 45566665543
No 162
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=59.45 E-value=27 Score=24.67 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=17.7
Q ss_pred cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEE
Q psy12591 43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
..|+++..+ +.|.....+.+++.+++.|+.+..
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 43 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHKGYSVLL 43 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEE
Confidence 345555432 334555566666666666655543
No 163
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=59.18 E-value=23 Score=25.48 Aligned_cols=10 Identities=30% Similarity=0.185 Sum_probs=5.0
Q ss_pred HHHHHhCCCc
Q psy12591 34 VEIVKKLGWS 43 (144)
Q Consensus 34 ~~ll~~f~W~ 43 (144)
.+.++..||+
T Consensus 23 ~~~~~~~g~~ 32 (313)
T 2h3h_A 23 KAAGKALGVD 32 (313)
T ss_dssp HHHHHHHTCE
T ss_pred HHHHHHcCCE
Confidence 3344555664
No 164
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=59.05 E-value=25 Score=27.06 Aligned_cols=73 Identities=5% Similarity=0.062 Sum_probs=47.2
Q ss_pred HHHHHHHhCCC---cEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCC---ce
Q psy12591 32 AMVEIVKKLGW---SYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR---AR 105 (144)
Q Consensus 32 a~~~ll~~f~W---~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~---ar 105 (144)
.+.++++.++. +++.+|++..-... .+.+.+++.|+.+.....+.+++ +.+.+.+.+..+++ .+ ++
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~p---t~~~v~~~~~~~~~-~~~~~~D 111 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEP---TTVQVDELTAQVKA-FNTKLPV 111 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCC---BHHHHHHHHHHHHH-HCSSCCS
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCC---CHHHHHHHHHHHHH-hCCCCCC
Confidence 35567777764 67777776443322 35667777787765545565554 46788888888873 44 88
Q ss_pred EEEEeeE
Q psy12591 106 GLFKRLK 112 (144)
Q Consensus 106 vii~~~~ 112 (144)
.||-...
T Consensus 112 ~IIavGG 118 (375)
T 3rf7_A 112 SVVGLGG 118 (375)
T ss_dssp EEEEEES
T ss_pred EEEEeCC
Confidence 8887653
No 165
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=58.87 E-value=41 Score=23.77 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=49.6
Q ss_pred ceEEecCCchHHHHHHHHHHHh-CCCc-EEEEEEEeCC--cchHHHHHHHHHhhhCc--eEEEEEecccCCCCCcchhhH
Q psy12591 18 YFTRTIPSDHHQVKAMVEIVKK-LGWS-YVSIIYEESN--YGVKAFEELEVLLAKYS--ICIAIKEKLVKDSGVAEETAY 91 (144)
Q Consensus 18 ~ffRt~p~d~~~~~a~~~ll~~-f~W~-~Vaii~~~~~--~g~~~~~~~~~~l~~~G--i~V~~~~~~~~~~~~~~~~~~ 91 (144)
.+......+...+..+++.|.. .|.+ +++++..... ......+.|.+.+++++ +.+... .+.... ...+.
T Consensus 101 ~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~~---~~~~~ 176 (303)
T 3d02_A 101 NWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVAE---SVDDS 176 (303)
T ss_dssp SEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCTT---CHHHH
T ss_pred ceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCCC---CHHHH
Confidence 3444555555666777787655 8887 9998865432 33456677888888754 544211 112111 23344
Q ss_pred HHHHHHHhc-CCCceEEEEe
Q psy12591 92 DDIVLKLLT-KPRARGLFKR 110 (144)
Q Consensus 92 ~~~l~~lk~-~~~arvii~~ 110 (144)
...+.++.. .++.++|++.
T Consensus 177 ~~~~~~~l~~~~~~~ai~~~ 196 (303)
T 3d02_A 177 RRTTLDLMKTYPDLKAVVSF 196 (303)
T ss_dssp HHHHHHHHHHCTTEEEEEES
T ss_pred HHHHHHHHHhCCCCCEEEEe
Confidence 455555542 3455666654
No 166
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=58.84 E-value=14 Score=26.50 Aligned_cols=50 Identities=8% Similarity=0.167 Sum_probs=35.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCc--chHHHHHHHHHhhhCceEE
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNY--GVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~Gi~V 73 (144)
..+..-+..+++.|...|.++|+++...... .....+.|.+.+++.|+.+
T Consensus 113 ~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (301)
T 3miz_A 113 PDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTE 164 (301)
T ss_dssp ECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCG
T ss_pred eChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCC
Confidence 3444455677777777899999999865433 3456778888888888653
No 167
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=58.77 E-value=50 Score=24.03 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=34.9
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC-cchHHHHHHHHHhhhCce
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN-YGVKAFEELEVLLAKYSI 71 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi 71 (144)
....+..-+..+++.|...|.++|+++....+ ......+.|.+.+++.|+
T Consensus 158 V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~ 208 (339)
T 3h5o_A 158 VGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAADC 208 (339)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTC
T ss_pred EEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCCC
Confidence 33344445566677777779999999986543 234456778888988887
No 168
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=58.18 E-value=16 Score=26.63 Aligned_cols=8 Identities=50% Similarity=0.464 Sum_probs=3.6
Q ss_pred HHHHhCCC
Q psy12591 35 EIVKKLGW 42 (144)
Q Consensus 35 ~ll~~f~W 42 (144)
+.++..||
T Consensus 27 ~~~~~~g~ 34 (316)
T 1tjy_A 27 EAGKALGI 34 (316)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhCC
Confidence 33444554
No 169
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=57.73 E-value=29 Score=24.94 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=6.3
Q ss_pred HHHHHHHHhCCC
Q psy12591 31 KAMVEIVKKLGW 42 (144)
Q Consensus 31 ~a~~~ll~~f~W 42 (144)
+.+-+-+...|+
T Consensus 27 ~gi~~~l~~~Gy 38 (302)
T 2qh8_A 27 QGLLDGLKAKGY 38 (302)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 444455555565
No 170
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=57.18 E-value=22 Score=23.80 Aligned_cols=64 Identities=9% Similarity=0.025 Sum_probs=38.3
Q ss_pred cEEEEEEEeCCc--ch---HHHHHHHHHhhhC-----ceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEESNY--GV---KAFEELEVLLAKY-----SICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~~~~--g~---~~~~~~~~~l~~~-----Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
-+++||...|+- |+ .....+.+.+++. |+.+.....++++ ...+.+.|++..+..++++||...
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd-----~~~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE-----VERIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC-----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC-----HHHHHHHHHHHHhcCCCCEEEECC
Confidence 367777754432 11 1123455666666 8888776666654 567777777664224688887764
No 171
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=56.81 E-value=15 Score=26.37 Aligned_cols=21 Identities=0% Similarity=-0.045 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHHhhhCceEE
Q psy12591 53 NYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 53 ~~g~~~~~~~~~~l~~~Gi~V 73 (144)
.|.....+.+++.+++.|..+
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~ 45 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGT 45 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEE
T ss_pred hHHHHHHHHHHHHHHHCCCEE
Confidence 344555555555555555554
No 172
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=56.80 E-value=47 Score=23.20 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=51.9
Q ss_pred HHHHHHHHhCCCcEEEEEEEe------------CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591 31 KAMVEIVKKLGWSYVSIIYEE------------SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vaii~~~------------~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l 98 (144)
...++.++..|++.|=+.... ........+.+++.+++.|+.+......... ....+...+...
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~----~~~~~~~~i~~A 100 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVAE----KSSDWEKMFKFA 100 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECCS----STTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCCc----cHHHHHHHHHHH
Confidence 456777788899988876432 1122345788999999999988766544322 245677777776
Q ss_pred hcCCCceEEEEee
Q psy12591 99 LTKPRARGLFKRL 111 (144)
Q Consensus 99 k~~~~arvii~~~ 111 (144)
+ .-+++.|+++.
T Consensus 101 ~-~lGa~~v~~~~ 112 (262)
T 3p6l_A 101 K-AMDLEFITCEP 112 (262)
T ss_dssp H-HTTCSEEEECC
T ss_pred H-HcCCCEEEecC
Confidence 6 57888888764
No 173
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=56.60 E-value=37 Score=24.96 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHHhCCCcEEEEEEEeCCc--chHHHHHHHHHhhhCceEE
Q psy12591 25 SDHHQVKAMVEIVKKLGWSYVSIIYEESNY--GVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 25 ~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~Gi~V 73 (144)
.+..-+..+++.|...|.++|+++...... .....+.|.+.+++.|+.+
T Consensus 162 d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~ 212 (349)
T 1jye_A 162 SHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQP 212 (349)
T ss_dssp CHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred chHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCc
Confidence 333344555666666699999999865332 3445677888899989754
No 174
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=56.47 E-value=43 Score=23.59 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=15.8
Q ss_pred EEEEEEE--eCCcchHHHHHHHHHhhhCceEEE
Q psy12591 44 YVSIIYE--ESNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 44 ~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|+++.. .+.|+....+.+++.+++.|..+.
T Consensus 10 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 42 (285)
T 3c3k_A 10 MLLVMVSNIANPFCAAVVKGIEKTAEKNGYRIL 42 (285)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEE
Confidence 4555543 233445555555555555555543
No 175
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=56.46 E-value=41 Score=22.76 Aligned_cols=62 Identities=5% Similarity=0.021 Sum_probs=38.7
Q ss_pred EEEEEEEeCCc--c---hHHHHHHHHHhh---hCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEESNY--G---VKAFEELEVLLA---KYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~~~~--g---~~~~~~~~~~l~---~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+++||...|+- | ......+...++ +.|+.+ ....++++ ...+.+.|.+..+..++++||...
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd-----~~~I~~~l~~~~~~~~~DlVittG 76 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE-----RDLIEKTLIELADEKGCSLILTTG 76 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC-----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC-----HHHHHHHHHHHHhcCCCCEEEECC
Confidence 67888765532 1 224456777666 889888 55555443 567777777765222688887765
No 176
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=56.31 E-value=50 Score=24.06 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=38.1
Q ss_pred cEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 43 SYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 43 ~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
..|+++.. .+.|.....+.+++.+++.|..+..... .. +.......+..+. ..+.+.||+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~----~~~~~~~~i~~l~-~~~vdGiIi~ 131 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT--DY----LPEKEEKVLYEML-SWRPSGVIIA 131 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC--TT----CHHHHHHHHHHHH-TTCCSEEEEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC--CC----CHHHHHHHHHHHH-hCCCCEEEEE
Confidence 35777764 3567778888888888888887754321 11 1233445566666 4567777665
No 177
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=56.12 E-value=36 Score=24.10 Aligned_cols=9 Identities=44% Similarity=0.505 Sum_probs=4.0
Q ss_pred HHHHhCCCc
Q psy12591 35 EIVKKLGWS 43 (144)
Q Consensus 35 ~ll~~f~W~ 43 (144)
+.++..|++
T Consensus 25 ~~a~~~g~~ 33 (288)
T 1gud_A 25 DEAKTLGVS 33 (288)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCCE
Confidence 334444543
No 178
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=55.66 E-value=5.1 Score=30.05 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=29.4
Q ss_pred HHHHhCCCcEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEec
Q psy12591 35 EIVKKLGWSYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEK 78 (144)
Q Consensus 35 ~ll~~f~W~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~ 78 (144)
-|.++||.+.+++... +.+.+..-...+.+.++++++.+.+.+.
T Consensus 202 Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~ 247 (312)
T 2o1e_A 202 YLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEE 247 (312)
T ss_dssp HHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSS
T ss_pred HHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3457888888777533 3455556667777888888887665543
No 179
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=55.22 E-value=27 Score=22.96 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=28.0
Q ss_pred CCCceEEecCCch-HHHHHHHHHHHhCCCcEEEEEEEeC--CcchHHHHHHHHHhhhCceEE
Q psy12591 15 RFEYFTRTIPSDH-HQVKAMVEIVKKLGWSYVSIIYEES--NYGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 15 ~~p~ffRt~p~d~-~~~~a~~~ll~~f~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~Gi~V 73 (144)
.|.-|+.-...|. ..+..+...|...|.+ +..+.. ..|....+.+.+.+++..+.|
T Consensus 20 ~~dvFISy~~~D~~~~~~~L~~~L~~~gi~---v~~D~~~l~~G~~~~~~i~~ai~~s~~~i 78 (154)
T 3h16_A 20 PHDIFISHAWEDKADFVEALAHTLRAAGAE---VWYDDFSLRPGDSLRRSIDKGLGSSRFGI 78 (154)
T ss_dssp SEEEEEEEEGGGTTTTHHHHHHHHHHHTCC---EECGGGEECTTCCHHHHHHHHHTSEEEEE
T ss_pred CceEEEECcccChHHHHHHHHHHHHHCCCc---EEEcHHhCCCccHHHHHHHHHHHhCcEEE
Confidence 4555655555554 2355555555554542 112221 345556666666666654443
No 180
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=54.79 E-value=35 Score=23.85 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=6.0
Q ss_pred HHHHHHHhCCCcE
Q psy12591 32 AMVEIVKKLGWSY 44 (144)
Q Consensus 32 a~~~ll~~f~W~~ 44 (144)
.+-+.++..|++-
T Consensus 22 gi~~~~~~~g~~~ 34 (271)
T 2dri_A 22 GAQKEADKLGYNL 34 (271)
T ss_dssp HHHHHHHHHTCEE
T ss_pred HHHHHHHHcCcEE
Confidence 3334445556543
No 181
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=54.04 E-value=23 Score=22.03 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=25.0
Q ss_pred CceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcc
Q psy12591 17 EYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYG 55 (144)
Q Consensus 17 p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g 55 (144)
.+-.||.-+....-..+-+|++.|+-+-+.++.+|.+|.
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkewa 64 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWA 64 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHH
Confidence 345677776666666677777777776666655554443
No 182
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=53.97 E-value=36 Score=25.02 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=40.3
Q ss_pred CcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 42 WSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 42 W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
-..|+++..+ +.|.....+.+++.+++.|..+..... ... .......+..+. ..+.+.||+..
T Consensus 70 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~----~~~~~~~~~~l~-~~~vdGiI~~~ 134 (355)
T 3e3m_A 70 SGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT--AYS----PEREEQLVETML-RRRPEAMVLSY 134 (355)
T ss_dssp -CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC--TTC----HHHHHHHHHHHH-HTCCSEEEEEC
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC--CCC----hHHHHHHHHHHH-hCCCCEEEEeC
Confidence 3568888753 457778888999999999988754321 111 233445666666 45677777653
No 183
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=53.75 E-value=30 Score=24.47 Aligned_cols=31 Identities=6% Similarity=0.200 Sum_probs=16.7
Q ss_pred EEEEEEE--eCCcchHHHHHHHHHhhhCceEEE
Q psy12591 44 YVSIIYE--ESNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 44 ~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|+++.. .+.|+....+.+++.+++.|+.+.
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 42 (290)
T 3clk_A 10 VIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLI 42 (290)
T ss_dssp EEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEE
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEE
Confidence 4555543 234555556666666666665543
No 184
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=53.30 E-value=32 Score=24.35 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHhhhCceEEE
Q psy12591 53 NYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 53 ~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|.......+++.+++.|..+.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~ 44 (288)
T 3gv0_A 23 GFTSQMVFGITEVLSTTQYHLV 44 (288)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEE
Confidence 3445555555555555555443
No 185
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=53.24 E-value=42 Score=23.73 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=16.2
Q ss_pred cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEE
Q psy12591 43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
..|+++..+ +.|.....+.+++.+++.|+.+.
T Consensus 21 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 54 (293)
T 2iks_A 21 RSIGLVIPDLENTSYTRIANYLERQARQRGYQLL 54 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEE
Confidence 345555432 33445555555555555555543
No 186
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=53.00 E-value=63 Score=23.50 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=37.5
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCc--chHHHHHHHHHhhhCceE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNY--GVKAFEELEVLLAKYSIC 72 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~Gi~ 72 (144)
....+..-+..+++.|...|-++|+++....+. .....+.|.+.+++.|+.
T Consensus 154 V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 206 (333)
T 3jvd_A 154 VLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE 206 (333)
T ss_dssp EEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC
Confidence 334445556677788877899999999865433 345678899999999987
No 187
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=52.91 E-value=26 Score=24.63 Aligned_cols=58 Identities=14% Similarity=0.286 Sum_probs=39.0
Q ss_pred cEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEE
Q psy12591 43 SYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLF 108 (144)
Q Consensus 43 ~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii 108 (144)
..|+++.. ++.|+....+.+++.+++.|..+.....- .. ......++.+. ..+.+.||
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~------~~~~~~~~~l~-~~~vdgiI 65 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TS------QAGTDPITSAL-SMRPDGII 65 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SS------CSSSCHHHHHH-TTCCSEEE
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-Cc------hHHHHHHHHHH-hCCCCEEE
Confidence 46888874 35688889999999999999887654332 11 12234555566 56778777
No 188
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=52.78 E-value=30 Score=24.42 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=6.1
Q ss_pred HHHHHHHhCCCc
Q psy12591 32 AMVEIVKKLGWS 43 (144)
Q Consensus 32 a~~~ll~~f~W~ 43 (144)
.+-+.++..|++
T Consensus 22 gi~~~~~~~g~~ 33 (283)
T 2ioy_A 22 GAEEKAKELGYK 33 (283)
T ss_dssp HHHHHHHHHTCE
T ss_pred HHHHHHHhcCcE
Confidence 334445556664
No 189
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=52.38 E-value=65 Score=23.41 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=38.5
Q ss_pred CcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 42 WSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 42 W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
=..|+++..+ +.|+....+.+++.+++.|..+.... ... +.......+..+. ..+.+.||+..
T Consensus 58 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~---~~~~~~~~~~~l~-~~~vdgiI~~~ 122 (340)
T 1qpz_A 58 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWN---NLEKQRAYLSMMA-QKRVDGLLVMC 122 (340)
T ss_dssp CSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CTT---CHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe---CCC---CHHHHHHHHHHHH-cCCCCEEEEeC
Confidence 3568888743 45777788888888888888775422 111 1233344556665 35567666643
No 190
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=51.65 E-value=33 Score=24.37 Aligned_cols=12 Identities=25% Similarity=-0.025 Sum_probs=6.9
Q ss_pred HHHHHHHHhCCC
Q psy12591 31 KAMVEIVKKLGW 42 (144)
Q Consensus 31 ~a~~~ll~~f~W 42 (144)
..+.+.++..||
T Consensus 22 ~gi~~~a~~~g~ 33 (309)
T 2fvy_A 22 KAIEQDAKAAPD 33 (309)
T ss_dssp HHHHHHHHTCTT
T ss_pred HHHHHHHHhcCC
Confidence 444455666776
No 191
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=51.51 E-value=27 Score=24.33 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=8.0
Q ss_pred cchHHHHHHHHHhhhCceE
Q psy12591 54 YGVKAFEELEVLLAKYSIC 72 (144)
Q Consensus 54 ~g~~~~~~~~~~l~~~Gi~ 72 (144)
|.....+.+++.+++.|..
T Consensus 17 ~~~~~~~gi~~~~~~~g~~ 35 (275)
T 3d8u_A 17 ACAHFLPSFQQALNKAGYQ 35 (275)
T ss_dssp HHHHHHHHHHHHHHHTSCE
T ss_pred cHHHHHHHHHHHHHHCCCE
Confidence 3333444444444444443
No 192
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=51.40 E-value=13 Score=28.56 Aligned_cols=70 Identities=11% Similarity=-0.006 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.+|.+++.+|++...++ ..+.+.+.|+ . .+.+ ..+.+++ +.+...+.+..++ ..+++.||-..
T Consensus 27 ~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~-~~~f-~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavG 96 (364)
T 3iv7_A 27 FLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--V-AIWH-DEVVMHV---PIEVAERARAVAT-DNEIDLLVCVG 96 (364)
T ss_dssp HHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--C-SEEE-CCCCTTC---BHHHHHHHHHHHH-HTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--C-CEEE-cceecCC---CHHHHHHHHHHHH-hcCCCEEEEeC
Confidence 456778888999998888765432 3344544554 2 1222 2344443 4677888888888 57788888765
No 193
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=51.35 E-value=41 Score=25.35 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=38.4
Q ss_pred HHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCc-eEEEEEecccCCCCCcchhhHHHHHHHHhcCCCc---eEEE
Q psy12591 33 MVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYS-ICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRA---RGLF 108 (144)
Q Consensus 33 ~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~G-i~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~a---rvii 108 (144)
+.++++.+ +++.+|++...+. ...+.+.+.| +.| +.+........++ +...+.+.+..++ ..++ +.||
T Consensus 24 l~~~l~~~--~~~liVtd~~~~~-~~~~~v~~~L-~~g~~~~~~~~~~e~~p---~~~~v~~~~~~~~-~~~~~r~d~iI 95 (354)
T 1xah_A 24 IGTYLNQF--DQSFLLIDEYVNQ-YFANKFDDIL-SYENVHKVIIPAGEKTK---TFEQYQETLEYIL-SHHVTRNTAII 95 (354)
T ss_dssp HHHHHTTC--SCEEEEEEHHHHH-HHHHHHC-------CEEEEEECSGGGGC---SHHHHHHHHHHHH-TTCCCTTCEEE
T ss_pred HHHHHHhc--CeEEEEECCcHHH-HHHHHHHHHH-hcCCeEEEEECCCCCCC---CHHHHHHHHHHHH-HcCCCCCceEE
Confidence 34555555 7888888654332 2566777777 677 4332222333333 3677788888888 4555 7787
Q ss_pred Eee
Q psy12591 109 KRL 111 (144)
Q Consensus 109 ~~~ 111 (144)
...
T Consensus 96 avG 98 (354)
T 1xah_A 96 AVG 98 (354)
T ss_dssp EEE
T ss_pred EEC
Confidence 664
No 194
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=51.28 E-value=44 Score=24.20 Aligned_cols=62 Identities=11% Similarity=-0.071 Sum_probs=28.1
Q ss_pred EEEEEEE-eCCcchHHHHHHHHHhhhCceE----EEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 44 YVSIIYE-ESNYGVKAFEELEVLLAKYSIC----IAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 44 ~Vaii~~-~~~~g~~~~~~~~~~l~~~Gi~----V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
+|+|+-. .+..-....+.|++.|++.|.. |.+...=..+ +......+++++. ..+.++||..
T Consensus 10 ~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~g----d~~~~~~~~~~l~-~~~~DlIiai 76 (302)
T 3lkv_A 10 KVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQG----NPAIAVQIARQFV-GENPDVLVGI 76 (302)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTT----CHHHHHHHHHHHH-TTCCSEEEEE
T ss_pred eEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCC----CHHHHHHHHHHHH-hcCCcEEEEc
Confidence 4555532 2222233455566666665531 2222111111 2344555666666 4556666543
No 195
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.90 E-value=58 Score=23.76 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=5.2
Q ss_pred HHHHHHhCCCc
Q psy12591 33 MVEIVKKLGWS 43 (144)
Q Consensus 33 ~~~ll~~f~W~ 43 (144)
+-+.++..||+
T Consensus 26 ~~~~a~~~g~~ 36 (350)
T 3h75_A 26 MQAAARDLGLD 36 (350)
T ss_dssp HHHHHHHHTCE
T ss_pred HHHHHHHcCCe
Confidence 33444455554
No 196
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=50.72 E-value=32 Score=24.19 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=37.2
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC-cchHHHHHHHHHhhhCceEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN-YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi~V 73 (144)
.......-+..+++.|...|-++|+++..... ......+.|.+.+++.|+.+
T Consensus 117 V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~ 169 (298)
T 3tb6_A 117 FTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFP 169 (298)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 33444555677778887789999999986544 23456778888999988764
No 197
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=50.54 E-value=22 Score=24.55 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=31.0
Q ss_pred HHHHHHhCCCc------EEEEEEEeCCcchHHHHHHHHHhhh-C-ceEEEEE
Q psy12591 33 MVEIVKKLGWS------YVSIIYEESNYGVKAFEELEVLLAK-Y-SICIAIK 76 (144)
Q Consensus 33 ~~~ll~~f~W~------~Vaii~~~~~~g~~~~~~~~~~l~~-~-Gi~V~~~ 76 (144)
.-+||+.-||+ .+-+++.++......++.++..|++ . ||.|...
T Consensus 83 Ak~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~ 134 (229)
T 3o6p_A 83 AKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVS 134 (229)
T ss_dssp HHHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34455555554 5666665555566789999999999 7 9988754
No 198
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=50.34 E-value=40 Score=24.02 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=38.3
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCc--chHHHHHHHHHhhhCceEEE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNY--GVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~Gi~V~ 74 (144)
....+..-+..+++.|...|-++|+++...... .....+.|.+.+++.|+.+.
T Consensus 124 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~ 178 (305)
T 3huu_A 124 IDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISND 178 (305)
T ss_dssp EECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCcc
Confidence 444445556677787777899999999875443 34567888999999997654
No 199
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=48.32 E-value=46 Score=23.62 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=10.7
Q ss_pred cchHHHHHHHHHhhhCceEEE
Q psy12591 54 YGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 54 ~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
|.......+++.+++.|..+.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~ 44 (294)
T 3qk7_A 24 TFLEMISWIGIELGKRGLDLL 44 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHHHHHCCCEEE
Confidence 444455555555555554443
No 200
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Probab=48.07 E-value=1e+02 Score=24.49 Aligned_cols=83 Identities=10% Similarity=0.086 Sum_probs=51.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCC
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR 103 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~ 103 (144)
......+..++..|...|++++.++..+. ......+.+.+.+++.|..+.+.. .... +..++...+.++++...
T Consensus 246 GgsgGIG~alA~~La~~Ga~~vvl~~R~~-~~~~~~~~l~~~l~~~g~~v~~~~-~Dvt----d~~~v~~~~~~i~~~g~ 319 (496)
T 3mje_A 246 GGTGGIGGRVARRLAEQGAAHLVLTSRRG-ADAPGAAELRAELEQLGVRVTIAA-CDAA----DREALAALLAELPEDAP 319 (496)
T ss_dssp TCSSHHHHHHHHHHHHTTCSEEEEEESSG-GGSTTHHHHHHHHHHTTCEEEEEE-CCTT----CHHHHHHHHHTCCTTSC
T ss_pred CCCCchHHHHHHHHHHCCCcEEEEEeCCC-CChHHHHHHHHHHHhcCCeEEEEE-ccCC----CHHHHHHHHHHHHHhCC
Confidence 44566888999887778998887776432 112334566777888887765432 2211 36678888888874334
Q ss_pred ceEEEEeeE
Q psy12591 104 ARGLFKRLK 112 (144)
Q Consensus 104 arvii~~~~ 112 (144)
.+++|-...
T Consensus 320 ld~vVh~AG 328 (496)
T 3mje_A 320 LTAVFHSAG 328 (496)
T ss_dssp EEEEEECCC
T ss_pred CeEEEECCc
Confidence 455554443
No 201
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=47.60 E-value=68 Score=25.19 Aligned_cols=52 Identities=6% Similarity=-0.035 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEE
Q psy12591 58 AFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 58 ~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~ 113 (144)
+...+...+.++|+-++....+-... +.++.+.|+-+.+.++.++|+++...
T Consensus 161 ~~~~~~~~~~~~g~G~s~~vs~G~~~----~~~~~d~l~~~~~D~~t~~I~l~~E~ 212 (457)
T 2csu_A 161 LGAGIVYKTIKEDIGFSKFISVGNMA----DVDFAELMEYLADTEEDKAIALYIEG 212 (457)
T ss_dssp HHHHHHHHHHHTTCEESEEEECTTCC----SSCHHHHHHHHTTCSSCCEEEEEESC
T ss_pred HHHHHHHHHHhcCCCeeEEEECCCcC----CCCHHHHHHHHhcCCCCCEEEEEEec
Confidence 34556667778887776665554443 56788899888877889999998853
No 202
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=47.56 E-value=41 Score=23.73 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.4
Q ss_pred HHHHHHHhCCCc
Q psy12591 32 AMVEIVKKLGWS 43 (144)
Q Consensus 32 a~~~ll~~f~W~ 43 (144)
.+.+.++..||+
T Consensus 29 gi~~~a~~~g~~ 40 (287)
T 3bbl_A 29 SMVREAGAVNYF 40 (287)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHcCCE
Confidence 333444455553
No 203
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=47.22 E-value=58 Score=21.35 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=53.9
Q ss_pred EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
+-..+....-...+.++++.....++-|... ....++.+...|.+.|+.+... ..+- +..+-...+.+.+
T Consensus 12 ~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~----~~~~~~~l~~~L~~~~~~~~~~---~g~~---~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 12 YVLCEHRKDKYQALCNIYGSITIGQAIIFCQ----TRRNAKWLTVEMIQDGHQVSLL---SGEL---TVEQRASIIQRFR 81 (175)
T ss_dssp EEECSSHHHHHHHHHHHHTTSCCSEEEEECS----CHHHHHHHHHHHHTTTCCEEEE---CSSC---CHHHHHHHHHHHH
T ss_pred EEEcCChHhHHHHHHHHHHhCCCCCEEEEEC----CHHHHHHHHHHHHHcCCcEEEE---eCCC---CHHHHHHHHHHHH
Confidence 3445554445677888888877776555443 2456777888888888765432 2221 1344556778887
Q ss_pred cCCCceEEEEeeEEeeeCCcch
Q psy12591 100 TKPRARGLFKRLKLVKDSGVAE 121 (144)
Q Consensus 100 ~~~~arvii~~~~~~~~~g~~~ 121 (144)
....+++| ++.+.+.|++.
T Consensus 82 -~g~~~vLv--aT~~~~~Gid~ 100 (175)
T 2rb4_A 82 -DGKEKVLI--TTNVCARGIDV 100 (175)
T ss_dssp -TTSCSEEE--ECCSCCTTTCC
T ss_pred -cCCCeEEE--EecchhcCCCc
Confidence 45556543 44566667664
No 204
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=46.95 E-value=48 Score=24.04 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=41.0
Q ss_pred CcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 42 WSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 42 W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
=..|+++..+ +.|+....+.+++.+++.|..+.... ... +.......++.+. ..+.+.||+..
T Consensus 63 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~---~~~~~~~~~~~l~-~~~vdgiI~~~ 127 (332)
T 2o20_A 63 TTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN---SDN---DVEKEEKVLETFL-SKQVDGIVYMG 127 (332)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CTT---CHHHHHHHHHHHH-HTTCSEEEECS
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE---CCC---ChHHHHHHHHHHH-hCCCCEEEEeC
Confidence 3568888753 45777888999999999998876432 111 1233345566666 45677777654
No 205
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=46.92 E-value=63 Score=21.90 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=37.9
Q ss_pred EeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEE
Q psy12591 50 EESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 50 ~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~ 113 (144)
-.|.-|....+.+.+.|+++|..|.-.-.....+.+ +=.++...+ ..+.+..-.+.|++|.+.
T Consensus 9 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~-dYpd~a~~va~~V~~g~~d~GIliCGTG 72 (162)
T 2vvp_A 9 GADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADD-DYPAFCIAAATRTVADPGSLGIVLGGSG 72 (162)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCEEEECSCCSCCTTC-CHHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred EeCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCC-ChHHHHHHHHHHHHcCCCceEEEEeCCc
Confidence 345667889999999999999988655444332110 112333333 334433446788888764
No 206
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=46.69 E-value=1e+02 Score=24.59 Aligned_cols=65 Identities=14% Similarity=-0.047 Sum_probs=35.5
Q ss_pred EEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC--CcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 44 YVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG--VAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 44 ~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~--~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
.|++|..... +...+...+.++|+-++....+-..+- .-.+.++...|+-+.+.++.++|+++..
T Consensus 114 ~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E 180 (480)
T 3dmy_A 114 NIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSK 180 (480)
T ss_dssp EEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred CEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 4555554332 233445556666666665544433310 0024567777777776677777777764
No 207
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=46.59 E-value=40 Score=24.89 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=35.3
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEEEEe-------------------CCcchHHHHHHHHHhhhCceE
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEE-------------------SNYGVKAFEELEVLLAKYSIC 72 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~-------------------~~~g~~~~~~~~~~l~~~Gi~ 72 (144)
....+..-+..+++.|...|.++|+++... ......-.+.|.+.+++.|+.
T Consensus 169 V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~ 238 (366)
T 3h5t_A 169 IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGID 238 (366)
T ss_dssp EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCC
T ss_pred EEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCC
Confidence 334444455677778877899999999832 122345677888889888875
No 208
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=46.52 E-value=63 Score=22.59 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCc--------------EEEEEEEeCCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 29 QVKAMVEIVKKLGWS--------------YVSIIYEESNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 29 ~~~a~~~ll~~f~W~--------------~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
-.+..-+||+.-||+ .+.+++. +......++.++..+++.||.|...
T Consensus 101 d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~i~ 161 (259)
T 3pam_A 101 NAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQ-SLEEEKVALAFQSNLSRLGIHAEIR 161 (259)
T ss_dssp HHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEES-SHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeC-CchHHHHHHHHHHHHHHcCCEEEEE
Confidence 344556688888996 2444443 3445668899999999999988755
No 209
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=45.99 E-value=86 Score=23.01 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=31.6
Q ss_pred HHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 60 EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 60 ~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
..+...+.++|+-+.....+-.... .+.++.+.|+-+.+.++.++|+++..
T Consensus 164 ~~~~~~~~~~g~G~s~~vs~G~~~~--~~~~~~d~l~~~~~D~~T~~I~l~~E 214 (294)
T 2yv1_A 164 YEIAHQIKKAGFGVSTCVGIGGDPI--VGLRYKEVLDLFEKDDETEAIVMIGE 214 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSS--CSSCHHHHHHHHHTCTTCSEEEEEEE
T ss_pred HHHHHHHHhCCCCeEEEEeeCCCCC--CCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 4455566667766665554533320 13467777777776677888888775
No 210
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=45.80 E-value=77 Score=22.86 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=40.9
Q ss_pred CcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 42 WSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 42 W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
-..|+++..+ +.|+....+.+++.+++.|..+..... .. +.......++.+. ..+.+.|| ..
T Consensus 60 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~---~~~~~~~~~~~l~-~~~vdgiI-~~ 123 (330)
T 3ctp_A 60 SKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT---DD---DKEKEKTYLEVLQ-SHRVAGII-AS 123 (330)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TT---CHHHHHHHHHHHH-HTTCSEEE-EE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC---CC---ChHHHHHHHHHHH-hCCCCEEE-EC
Confidence 3568888753 457778889999999999988765321 11 1233445666666 46688777 53
No 211
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=45.60 E-value=74 Score=22.15 Aligned_cols=75 Identities=9% Similarity=-0.005 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEE
Q psy12591 31 KAMVEIVKKLGWSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLF 108 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii 108 (144)
...++.++..|++.|-+.... .++.....+.+++.+++.|+.+......... ....+...+...+ .-+++.|+
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~----~~~~~~~~i~~A~-~lGa~~v~ 107 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYMK----SEEEIDRAFDYAK-RVGVKLIV 107 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEEC----SHHHHHHHHHHHH-HHTCSEEE
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccC----CHHHHHHHHHHHH-HhCCCEEE
Confidence 566777888999988876431 1223445678999999999988755433222 2456777776665 56788777
Q ss_pred Ee
Q psy12591 109 KR 110 (144)
Q Consensus 109 ~~ 110 (144)
++
T Consensus 108 ~~ 109 (257)
T 3lmz_A 108 GV 109 (257)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 212
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=45.33 E-value=77 Score=23.18 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=32.5
Q ss_pred HHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 60 EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 60 ~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
..+...+.++|+-+.....+-.... .+.++.+.|+-+.+.++.++|+++..
T Consensus 158 ~~~~~~~~~~g~G~s~~vs~G~~~~--~~~~~~d~l~~~~~D~~t~~I~l~~E 208 (288)
T 1oi7_A 158 YEAAAALSQAGLGTTTTVGIGGDPV--IGTTFKDLLPLFNEDPETEAVVLIGE 208 (288)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSC--CSSCHHHHHHHHHTCTTCCEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCcC--CCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 4455566677776666555543320 13467778887776778888888874
No 213
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=45.27 E-value=68 Score=21.60 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=42.7
Q ss_pred EEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEE
Q psy12591 44 YVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 44 ~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~ 113 (144)
.|-|..-.|.-|..+.+.+.+.|+++|..|.-.-.....+. +=.++...+ +.+.+..-.|.|++|.+.
T Consensus 12 ~~~i~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~--dYpd~a~~va~~V~~g~~d~GIliCGTG 80 (155)
T 1o1x_A 12 HVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESV--DYPDYAKKVVQSILSNEADFGILLCGTG 80 (155)
T ss_dssp CCEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCC--CHHHHHHHHHHHHHTTSCSEEEEEESSS
T ss_pred ceeEEEeeCchHHHHHHHHHHHHHHCCCEEEEeCCCCCCCC--ChHHHHHHHHHHHHcCCCceEEEEcCCc
Confidence 45555556778889999999999999998875544432221 112333333 444433445788888764
No 214
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=45.19 E-value=71 Score=21.78 Aligned_cols=65 Identities=5% Similarity=-0.168 Sum_probs=38.6
Q ss_pred EEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH-HHHHHhcCCCceEEEEeeEE
Q psy12591 47 IIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD-IVLKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 47 ii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~-~l~~lk~~~~arvii~~~~~ 113 (144)
|..-.|.-|....+.+.+.|+++|..|.-.-.....+.+. .++.. .-+.+.+..-.|.|++|.+.
T Consensus 24 IaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dY--Pd~a~~va~~V~~g~~d~GIliCGTG 89 (166)
T 3s5p_A 24 VAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDY--PDFAKIGCEAVTSGRADCCILVCGTG 89 (166)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC----------CHHHHHHHHHHHTTSCSEEEEEESSS
T ss_pred EEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCH--HHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 4445567788999999999999999887654443222111 23333 33445533445788888764
No 215
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=45.06 E-value=29 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=11.8
Q ss_pred CcchHHHHHHHHHhhhCceEEE
Q psy12591 53 NYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 53 ~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
.|.......+++.+++.|..+.
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~ 33 (276)
T 2h0a_A 12 EFYRRLVEGIEGVLLEQRYDLA 33 (276)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
Confidence 4445555555555555555443
No 216
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=44.93 E-value=72 Score=21.83 Aligned_cols=64 Identities=16% Similarity=0.038 Sum_probs=38.6
Q ss_pred hCCCcEEEEEEEeCC-------cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 39 KLGWSYVSIIYEESN-------YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 39 ~f~W~~Vaii~~~~~-------~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
|.|-.+|-+|...-. +....++.+.+.+++.|..|....-. . ..++..+.++|+. |+.||+.+
T Consensus 9 ~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~-~------~~d~~~~~~~l~~---AD~iV~~~ 78 (204)
T 2amj_A 9 HHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRAD-S------DYDVKAEVQNFLW---ADVVIWQM 78 (204)
T ss_dssp ---CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESS-S------CCCHHHHHHHHHH---CSEEEEEE
T ss_pred ccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCC-c------cccHHHHHHHHHh---CCEEEEEC
Confidence 456777887764433 33446777788888888777654422 1 2357788888883 66666554
Q ss_pred E
Q psy12591 112 K 112 (144)
Q Consensus 112 ~ 112 (144)
.
T Consensus 79 P 79 (204)
T 2amj_A 79 P 79 (204)
T ss_dssp E
T ss_pred C
Confidence 4
No 217
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=44.69 E-value=74 Score=23.25 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=34.7
Q ss_pred HHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEE
Q psy12591 59 FEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 59 ~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~ 113 (144)
...+...+.+.|+-+.....+-.... .+.++.+.|+-+.+.++.++|+++...
T Consensus 157 ~~~~~~~~~~~g~G~s~~vs~G~~~~--~~~~~~d~l~~l~~D~~t~~I~l~~E~ 209 (288)
T 2nu8_A 157 TYEAVKQTTDYGFGQSTCVGIGGDPI--PGSNFIDILEMFEKDPQTEAIVMIGEI 209 (288)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSS--CSSCHHHHHHHHHTCTTCCEEEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCcC--CCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence 34555666777776666555543321 146778888888767888888888853
No 218
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=44.62 E-value=56 Score=22.44 Aligned_cols=63 Identities=8% Similarity=-0.024 Sum_probs=34.9
Q ss_pred EEEEEEEeCCcc-hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEESNYG-VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~~~~g-~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
+|-+|+..-... ....+.+.+.+++.|..|....-...... ...|+..+..+|+ . |++||+-+
T Consensus 3 kiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~--~~~dv~~~~~~l~-~--AD~iv~~~ 66 (192)
T 3f2v_A 3 KTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQ--GKIDVAAEQKLIE-T--HDSLVWQF 66 (192)
T ss_dssp CEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTT--CCCCHHHHHHHHH-T--SSSEEEEE
T ss_pred EEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCC--CchhHHHHHHHHH-h--CCEEEEEc
Confidence 355555433222 24777888888887765554432221111 1357888899998 3 45454443
No 219
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=44.25 E-value=75 Score=22.91 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=39.5
Q ss_pred cEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
..|+++.. .+.|+....+.+++.+++.|..+.... ... +.......++.+. ..+++.||+..
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~---~~~~~~~~~~~l~-~~~vdgiI~~~ 124 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SDQ---NQDKELHLLNNML-GKQVDGIIFMS 124 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CCS---HHHHHHHHHHHTS-CCSSCCEEECC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CCC---ChHHHHHHHHHHH-hCCCcEEEEec
Confidence 56888874 467888889999999999998775432 111 1223344556665 45666666543
No 220
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=44.23 E-value=52 Score=23.21 Aligned_cols=20 Identities=10% Similarity=0.105 Sum_probs=8.8
Q ss_pred cchHHHHHHHHHhhhCceEE
Q psy12591 54 YGVKAFEELEVLLAKYSICI 73 (144)
Q Consensus 54 ~g~~~~~~~~~~l~~~Gi~V 73 (144)
|+....+.+++.+++.|..+
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~ 41 (290)
T 2rgy_A 22 YYGTILKQTDLELRAVHRHV 41 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHHCCCEE
Confidence 33444444444444444433
No 221
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=44.17 E-value=90 Score=22.93 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=32.1
Q ss_pred HHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 60 EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 60 ~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
..+...+.++|+-+.....+-.... .+.++.+.|+-+.+.++.++|+++..
T Consensus 165 ~~~~~~~~~~g~G~s~~vs~G~~~~--~~~~~~d~l~~~~~D~~T~~I~l~~E 215 (297)
T 2yv2_A 165 YEISYMLTRQGIGQSTVIGIGGDPI--VGLSFTEALKLFQEDPQTEALVLIGE 215 (297)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSS--CSSCHHHHHHHHHTCTTCSEEEEEEC
T ss_pred HHHHHHHHHcCCCeeEEEeeCCCcC--CCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 4455566677766665555543320 13467777877776778888888774
No 222
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=43.71 E-value=61 Score=20.61 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEEEeCCcc----hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhh-HHHHHHHHhcC
Q psy12591 27 HHQVKAMVEIVKKLGWSYVSIIYEESNYG----VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETA-YDDIVLKLLTK 101 (144)
Q Consensus 27 ~~~~~a~~~ll~~f~W~~Vaii~~~~~~g----~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~-~~~~l~~lk~~ 101 (144)
..|-..+-++++..||.-+.+..+....| +.....+.+.+++..+.+.....+..-.- +..+ +...+..++ .
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R--~~~~~~~~~~~~l~-~ 100 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLVYKLDRLSR--SVRDTLYLVKDVFT-K 100 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEESSHHHHCS--CHHHHHHHHHHTTG-G
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEEEeCCcccc--cHHHHHHHHHHHHH-H
Confidence 34667777888888998777655543333 33445555555555443434433332210 1344 445556666 5
Q ss_pred CCceEEEEe
Q psy12591 102 PRARGLFKR 110 (144)
Q Consensus 102 ~~arvii~~ 110 (144)
.+.+++.+-
T Consensus 101 ~gv~l~~~~ 109 (138)
T 3bvp_A 101 NKIDFISLN 109 (138)
T ss_dssp GTCEEEETT
T ss_pred CCCEEEEec
Confidence 677776553
No 223
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=43.31 E-value=98 Score=22.88 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=30.3
Q ss_pred HHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEE
Q psy12591 60 EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 60 ~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~ 113 (144)
..+...+.+.|+-+.....+-.... .+.++.+.|+-+.+.++.++|+++...
T Consensus 166 ~~~~~~~~~~g~G~S~~vs~G~~~~--~~~~~~d~l~~~~~Dp~T~~I~l~~E~ 217 (305)
T 2fp4_A 166 YEAVHQTTQVGLGQSLCVGIGGDPF--NGTDFTDCLEIFLNDPATEGIILIGEI 217 (305)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSS--CSCCHHHHHHHHHHCTTCCEEEEEEES
T ss_pred HHHHHHHHhcCCCeeEEeccCCCcC--CCCCHHHHHHHHhcCCCCcEEEEEEec
Confidence 3445556666666655544433310 135677777777666777777777753
No 224
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=43.17 E-value=91 Score=22.48 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=34.1
Q ss_pred EecCCchHHHHHHHHHHHh-CC-CcEEEEEEEeCCc-chHHHHHHHHHhhhCce
Q psy12591 21 RTIPSDHHQVKAMVEIVKK-LG-WSYVSIIYEESNY-GVKAFEELEVLLAKYSI 71 (144)
Q Consensus 21 Rt~p~d~~~~~a~~~ll~~-f~-W~~Vaii~~~~~~-g~~~~~~~~~~l~~~Gi 71 (144)
.....+...+..+++.|.. +| .++|+++.....+ .....+.|.+.+++.|+
T Consensus 152 ~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~ 205 (342)
T 1jx6_A 152 YVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN 205 (342)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC
T ss_pred EEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC
Confidence 3444555556667776654 57 9999999755432 33456778888888886
No 225
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=43.07 E-value=32 Score=22.49 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=41.7
Q ss_pred HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 38 KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 38 ~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
..++|+++.+-...+---.+....+...|.++||.+-....|..+--.=++.+....+.-|+
T Consensus 67 ~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty~tDhIlVp~~~~~~A~~~L~ 128 (133)
T 1zvp_A 67 SSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALG 128 (133)
T ss_dssp CCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSSCEEEEEEGGGHHHHHHHHT
T ss_pred cCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEeccccEEEEehhHHHHHHHHHH
Confidence 35689998886432222345778899999999998877766654321124678888888887
No 226
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=42.61 E-value=15 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=20.6
Q ss_pred cEEEEEEE---eCCcchHHHHHHHHHhhhCceEEE
Q psy12591 43 SYVSIIYE---ESNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 43 ~~Vaii~~---~~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
..|+++.. .+.|.......+++.+++.|..+.
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 46 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYN 46 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSE
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEE
Confidence 45777765 245666677777777777776543
No 227
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=42.32 E-value=86 Score=21.94 Aligned_cols=51 Identities=18% Similarity=0.114 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHH-HhCC-CcEEEEEEEeCCc--chHHHHHHHHHhhhC-ceEEEE
Q psy12591 25 SDHHQVKAMVEIV-KKLG-WSYVSIIYEESNY--GVKAFEELEVLLAKY-SICIAI 75 (144)
Q Consensus 25 ~d~~~~~a~~~ll-~~f~-W~~Vaii~~~~~~--g~~~~~~~~~~l~~~-Gi~V~~ 75 (144)
.+...+..+++.| +.+| -++|+++...... .....+.|.+.+++. |+.+..
T Consensus 104 D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~ 159 (283)
T 2ioy_A 104 DNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA 159 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred ChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe
Confidence 3344456666765 4445 8999999864332 344567788889887 887643
No 228
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=41.72 E-value=1.2e+02 Score=23.42 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=25.0
Q ss_pred cEEEEEEEeCCcc--hHHHHHHHHHhhhCceEEEEEe
Q psy12591 43 SYVSIIYEESNYG--VKAFEELEVLLAKYSICIAIKE 77 (144)
Q Consensus 43 ~~Vaii~~~~~~g--~~~~~~~~~~l~~~Gi~V~~~~ 77 (144)
++|.|+|. +.|| +.+++.+.+.+.+.|+.+....
T Consensus 266 ~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~ 301 (410)
T 4dik_A 266 GKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYK 301 (410)
T ss_dssp TEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEE
Confidence 36777764 5676 4578999999999998876443
No 229
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=41.52 E-value=73 Score=20.90 Aligned_cols=80 Identities=9% Similarity=-0.017 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEEEeCCcch-----HHHHHHHHHhhhCc--eEEEEEecccCCCCCcchhhHHHHHHHHhcC
Q psy12591 29 QVKAMVEIVKKLGWSYVSIIYEESNYGV-----KAFEELEVLLAKYS--ICIAIKEKLVKDSGVAEETAYDDIVLKLLTK 101 (144)
Q Consensus 29 ~~~a~~~ll~~f~W~~Vaii~~~~~~g~-----~~~~~~~~~l~~~G--i~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 101 (144)
|-..+-+++...||.-+.+..+....|. .....+.+.++... +.+.....+..-.- +..++-..+..|+ .
T Consensus 27 Q~~~l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R--~~~~~~~~~~~l~-~ 103 (167)
T 3guv_A 27 QKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSGKDGVSFVLVFKLSRFAR--NAADVLSTLQIMQ-D 103 (167)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTCTTCCSEEEESCGGGTCS--SHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhCCCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcCCCCccEEEEEeCchhcC--CHHHHHHHHHHHH-H
Confidence 4556667777789987776655433343 33444444555443 44444444444321 2566777888888 5
Q ss_pred CCceEEEEee
Q psy12591 102 PRARGLFKRL 111 (144)
Q Consensus 102 ~~arvii~~~ 111 (144)
.+.+++.+-.
T Consensus 104 ~gv~l~~~~~ 113 (167)
T 3guv_A 104 YGVNLICVED 113 (167)
T ss_dssp TTCEEEETTT
T ss_pred CCCEEEEeeC
Confidence 7788776543
No 230
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=41.30 E-value=44 Score=23.82 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=6.6
Q ss_pred HHHHHHHhCCCc
Q psy12591 32 AMVEIVKKLGWS 43 (144)
Q Consensus 32 a~~~ll~~f~W~ 43 (144)
.+-+.++..||+
T Consensus 23 gi~~~a~~~g~~ 34 (306)
T 2vk2_A 23 VAKSEAEKRGIT 34 (306)
T ss_dssp HHHHHHHHHTCE
T ss_pred HHHHHHHHcCCE
Confidence 344455666765
No 231
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=40.91 E-value=37 Score=24.64 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=7.0
Q ss_pred HHHHHHHHhCCCc
Q psy12591 31 KAMVEIVKKLGWS 43 (144)
Q Consensus 31 ~a~~~ll~~f~W~ 43 (144)
..+.+.++..||+
T Consensus 25 ~gi~~~a~~~g~~ 37 (332)
T 2rjo_A 25 KGAQSFAKSVGLP 37 (332)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCE
Confidence 3344455566765
No 232
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=40.63 E-value=85 Score=21.43 Aligned_cols=65 Identities=14% Similarity=-0.026 Sum_probs=39.9
Q ss_pred EEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEE
Q psy12591 47 IIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 47 ii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~ 113 (144)
|..-.|.-|....+.+.+.|+++|..|.-.-.....+. +=.++...+ +.+.+..-.|.|++|.+.
T Consensus 23 IaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~--dYpd~a~~va~~V~~g~~d~GIliCGTG 88 (169)
T 3ph3_A 23 IGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESV--DYPDFGLKVAEAVKSGECDRGIVICGTG 88 (169)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCC--CHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred EEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCC--CHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 44445667888999999999999998865544433221 112343333 444433445788888764
No 233
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=40.26 E-value=81 Score=21.04 Aligned_cols=64 Identities=13% Similarity=-0.047 Sum_probs=39.7
Q ss_pred EEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEE
Q psy12591 48 IYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 48 i~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~ 113 (144)
..-.|.-|....+.+.+.|+++|..|.-.-.....+. +=.++...+ +.+.+..-.|.|++|.+.
T Consensus 4 ~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~--dYpd~a~~va~~V~~g~~d~GIliCGTG 68 (149)
T 3he8_A 4 GIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESV--DYPDFGLKVAEAVKSGECDRGIVICGTG 68 (149)
T ss_dssp EEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCC--CHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred EEEECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCC--CHHHHHHHHHHHHHcCCCCEEEEEcCCc
Confidence 3345667889999999999999998865544433221 112343333 444433445788888764
No 234
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=39.94 E-value=1e+02 Score=22.11 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=45.4
Q ss_pred cCCchHHHHHHHHHHHh---CCCcEEEEEEEeC--CcchHHHHHHHHHhhhC--ceEEEEEecccCCCCCcchhhHHHHH
Q psy12591 23 IPSDHHQVKAMVEIVKK---LGWSYVSIIYEES--NYGVKAFEELEVLLAKY--SICIAIKEKLVKDSGVAEETAYDDIV 95 (144)
Q Consensus 23 ~p~d~~~~~a~~~ll~~---f~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~--Gi~V~~~~~~~~~~~~~~~~~~~~~l 95 (144)
.......+..+++.|.. .|-++|+++.... .......+.+.+.+++. |+.+..... ... ........+
T Consensus 106 ~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~--~~~---~~~~~~~~~ 180 (316)
T 1tjy_A 106 QGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQF--GYN---DATKSLQTA 180 (316)
T ss_dssp SCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEE--CTT---CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEecc--CCC---CHHHHHHHH
Confidence 34444556677776544 4688999997532 23345667777788664 666654321 111 133334444
Q ss_pred HHHhc-CCCceEEEEe
Q psy12591 96 LKLLT-KPRARGLFKR 110 (144)
Q Consensus 96 ~~lk~-~~~arvii~~ 110 (144)
+++.+ .++..+|++.
T Consensus 181 ~~ll~~~~~~~aI~~~ 196 (316)
T 1tjy_A 181 EGIIKAYPDLDAIIAP 196 (316)
T ss_dssp HHHHHHCSSCCEEEEC
T ss_pred HHHHHhCCCCCEEEEC
Confidence 44432 3456666654
No 235
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=39.70 E-value=78 Score=20.69 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=8.8
Q ss_pred CchHHHHHHHHHHHhCCC
Q psy12591 25 SDHHQVKAMVEIVKKLGW 42 (144)
Q Consensus 25 ~d~~~~~a~~~ll~~f~W 42 (144)
+....++.+++-+..-|.
T Consensus 17 nT~~iA~~ia~~l~~~g~ 34 (159)
T 3fni_A 17 YSDRLAQAIINGITKTGV 34 (159)
T ss_dssp THHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 444455555555544443
No 236
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=39.30 E-value=78 Score=22.77 Aligned_cols=8 Identities=25% Similarity=0.164 Sum_probs=4.0
Q ss_pred HHHHHHHh
Q psy12591 92 DDIVLKLL 99 (144)
Q Consensus 92 ~~~l~~lk 99 (144)
...+.+++
T Consensus 77 ~~~~~~~~ 84 (325)
T 2x7x_A 77 TPIVEEAY 84 (325)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455554
No 237
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=39.29 E-value=12 Score=28.57 Aligned_cols=71 Identities=6% Similarity=-0.024 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.++++.+| +++.+|++...+.....+.+.+.|++.|+.+. .+...+ +..++.+.+..++ . +++.||...
T Consensus 32 ~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~---~~~ge~---~~~~v~~~~~~~~-~-~~d~IIavG 102 (376)
T 1kq3_A 32 ILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQ---IFGGEC---SDEEIERLSGLVE-E-ETDVVVGIG 102 (376)
T ss_dssp GHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEE---ECCSSC---BHHHHHHHHTTCC-T-TCCEEEEEE
T ss_pred HHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEE---EeCCCC---CHHHHHHHHHHHh-c-CCCEEEEeC
Confidence 3456777788 89988886543322225566667777774332 233332 3456777776666 4 788888665
No 238
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.07 E-value=95 Score=21.52 Aligned_cols=51 Identities=10% Similarity=-0.071 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHHHhC--CCcEEEEEEEeCCc--chHHHHHHHHHhhhCceEEEE
Q psy12591 25 SDHHQVKAMVEIVKKL--GWSYVSIIYEESNY--GVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 25 ~d~~~~~a~~~ll~~f--~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
.+..-+..+++.|... |-++|+++...... ...-.+.|.+.+++.|+.+..
T Consensus 104 D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~ 158 (271)
T 2dri_A 104 DNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLA 158 (271)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred ChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEE
Confidence 3333445566655433 56899999754322 244567788889888987643
No 239
>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural G PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} SCOP: c.52.1.26
Probab=38.70 E-value=1.3e+02 Score=23.00 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEec
Q psy12591 28 HQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEK 78 (144)
Q Consensus 28 ~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~ 78 (144)
+..+.++.++ ..++.++|.+|++.+ .....+.+...+++.|+.+...+-
T Consensus 13 ~p~pnil~~l~~~~kp~~vv~I~s~~--~~~~~~~l~~~l~~~~i~~~~~~i 62 (385)
T 1xmx_A 13 DPVRLVTPLLDHRTVSRHIIFIGDHT--QTVIYQRLSDVLNKRNISTDFFEI 62 (385)
T ss_dssp SCHHHHHHHHSTTCCCCEEEEEECGG--GHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CchhHHHHHhcccCCCCEEEEEECCc--HHHHHHHHHHHHHHcCCCceEEec
Confidence 3445666666 469999999999854 346788889999999987765544
No 240
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=38.32 E-value=1.1e+02 Score=22.13 Aligned_cols=53 Identities=9% Similarity=-0.118 Sum_probs=34.8
Q ss_pred eEEecCCchHHHHHHHHHHHhCC------C-cEEEEEEEeCC--cchHHHHHHHHHhhhCce
Q psy12591 19 FTRTIPSDHHQVKAMVEIVKKLG------W-SYVSIIYEESN--YGVKAFEELEVLLAKYSI 71 (144)
Q Consensus 19 ffRt~p~d~~~~~a~~~ll~~f~------W-~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi 71 (144)
+....+.+...+..+++.|...+ - .+|+++..... ......+.|.+.+++.|.
T Consensus 115 ~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~ 176 (350)
T 3h75_A 115 IGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ 176 (350)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT
T ss_pred eeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 44445555556677777665444 4 78999875432 334567788899999885
No 241
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=38.03 E-value=94 Score=24.15 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 58 AFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 58 ~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
....+...+++.|+.+.....++.+ ...+.+.|.+.. .++++||...
T Consensus 205 n~~~L~~~l~~~G~~v~~~~iv~Dd-----~~~i~~al~~a~--~~~DlvittG 251 (411)
T 1g8l_A 205 NRLAVHLMLEQLGCEVINLGIIRDD-----PHALRAAFIEAD--SQADVVISSG 251 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHH--HHCSEEEECS
T ss_pred chHHHHHHHHHCCCEEEEEEEeCCC-----HHHHHHHHHHHh--hcCCEEEECC
Confidence 4566888888899888776666554 456777776654 2577776554
No 242
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=37.77 E-value=89 Score=20.82 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=38.2
Q ss_pred EeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEE
Q psy12591 50 EESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 50 ~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~ 113 (144)
-.|.-|....+.+.+.|+++|..|.-.-.+...+. +=.++...+ +.+.+..-.+.|++|.+.
T Consensus 7 gsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~--dYpd~a~~va~~V~~g~~d~GIliCGTG 69 (149)
T 2vvr_A 7 GCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERT--DYPHYASQVALAVAGGEVDGGILICGTG 69 (149)
T ss_dssp EECTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCC--CHHHHHHHHHHHHHTTSSSEEEEEESSS
T ss_pred EeCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCC--ChHHHHHHHHHHHHcCCCceEEEEeCCc
Confidence 34566788999999999999998865544333221 112343333 344433445788888764
No 243
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=37.65 E-value=76 Score=24.45 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCC
Q psy12591 31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKD 82 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~ 82 (144)
...+.+|+++. ++|.+.+++|.-|+..+....+.+.+.|+.+... .+|.+
T Consensus 277 ~~~~~~L~r~~-~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~-~lP~g 326 (407)
T 2au3_A 277 QNQANLLSKFT-KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPV-YLPEG 326 (407)
T ss_dssp HHHHHHHHTTC-SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE-CCCTT
T ss_pred HHHHHHHHhcC-CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEE-ECCCC
Confidence 33456676654 6888888888889988888888888888765432 34433
No 244
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=37.60 E-value=1.2e+02 Score=22.26 Aligned_cols=86 Identities=9% Similarity=0.056 Sum_probs=49.9
Q ss_pred cCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhc-C
Q psy12591 23 IPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLT-K 101 (144)
Q Consensus 23 ~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~-~ 101 (144)
.......+.+++..+..-||+-++..-+-........+.+.+.++..|..+.... ..-. +..++.+.++++.+ .
T Consensus 11 TGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~-~Dvt----d~~~v~~~~~~~~~~~ 85 (324)
T 3u9l_A 11 TGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLE-LDVQ----SQVSVDRAIDQIIGED 85 (324)
T ss_dssp SSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEE-CCTT----CHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEE-eecC----CHHHHHHHHHHHHHHc
Confidence 3455678999999887779864443322223333445666666666564443322 1111 35677777777753 2
Q ss_pred CCceEEEEeeEE
Q psy12591 102 PRARGLFKRLKL 113 (144)
Q Consensus 102 ~~arvii~~~~~ 113 (144)
.+.+++|-++..
T Consensus 86 g~iD~lVnnAG~ 97 (324)
T 3u9l_A 86 GRIDVLIHNAGH 97 (324)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 357788777653
No 245
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=37.57 E-value=55 Score=22.93 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCc--------------EEEEEEEe-CCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 29 QVKAMVEIVKKLGWS--------------YVSIIYEE-SNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 29 ~~~a~~~ll~~f~W~--------------~Vaii~~~-~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
--+..-+||+.-||+ .+.+++.+ +......++.++..|++.||.|...
T Consensus 100 d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~ 162 (258)
T 3lvu_A 100 NLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIE 162 (258)
T ss_dssp HHHHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEE
T ss_pred CHHHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEE
Confidence 344556688888996 24455554 2345678899999999999988655
No 246
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.90 E-value=1.1e+02 Score=21.66 Aligned_cols=85 Identities=6% Similarity=-0.094 Sum_probs=48.3
Q ss_pred ecCCchHHHHHHHHHHH-hCCCcEEEEEEEeCCc--chHHHHHHHHHhhhC----ceEEEEEecccCCCCCcchhhHHHH
Q psy12591 22 TIPSDHHQVKAMVEIVK-KLGWSYVSIIYEESNY--GVKAFEELEVLLAKY----SICIAIKEKLVKDSGVAEETAYDDI 94 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~-~f~W~~Vaii~~~~~~--g~~~~~~~~~~l~~~----Gi~V~~~~~~~~~~~~~~~~~~~~~ 94 (144)
....+...+..+++.|. ..|-++|+++...... .....+.|.+.+++. ++.+...... .+. +.......
T Consensus 102 V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~ 177 (313)
T 3m9w_A 102 ISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWV-DGW---LPENALKI 177 (313)
T ss_dssp EEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEC-GGG---CHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccC-CCc---CHHHHHHH
Confidence 44455556677777765 8899999999754332 334567777777776 6766543321 111 12233333
Q ss_pred HHHHh-cC-CCceEEEEe
Q psy12591 95 VLKLL-TK-PRARGLFKR 110 (144)
Q Consensus 95 l~~lk-~~-~~arvii~~ 110 (144)
+.++. .. ++..+|++.
T Consensus 178 ~~~~l~~~~~~~~ai~~~ 195 (313)
T 3m9w_A 178 MENALTANNNKIDAVVAS 195 (313)
T ss_dssp HHHHHHHTTTCCCEEEES
T ss_pred HHHHHHhCCCCeeEEEEC
Confidence 33333 22 567777664
No 247
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=36.86 E-value=55 Score=23.99 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=37.8
Q ss_pred cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
..|+++..+ +.|+....+.+++.+++.|..+..... .. +.......++.+. ..+++.||+..
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~---~~~~~~~~~~~l~-~~~vdgiI~~~ 130 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---NE---DATTMSGSLEFLT-SHGVDGIICVP 130 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---TT---CHHHHHHHHHHHH-HTTCSCEEECC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CC---CHHHHHHHHHHHH-hCCCCEEEEeC
Confidence 358888743 567778888899999999987754321 11 1223344556565 35566666543
No 248
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=36.09 E-value=69 Score=24.05 Aligned_cols=75 Identities=15% Similarity=0.033 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEE
Q psy12591 28 HQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL 107 (144)
Q Consensus 28 ~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvi 107 (144)
..+..+++.|..-+..-+++++.-+.-+. ...+.+.+.+.|+.+.....+.... ....+.+..|+ ..+++++
T Consensus 32 ~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~--~~~v~~~A~~~gIpv~~~~~~~~~~-----~~~~~~~~~l~-~~~~Dli 103 (329)
T 2bw0_A 32 LFGQEVYCHLRKEGHEVVGVFTVPDKDGK--ADPLGLEAEKDGVPVFKYSRWRAKG-----QALPDVVAKYQ-ALGAELN 103 (329)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCCCSSC--CCHHHHHHHHHTCCEEECSCCEETT-----EECHHHHHHHH-TTCCSEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCcCCC--CCHHHHHHHHcCCCEEecCcccccc-----cccHHHHHHHH-hcCCCEE
Confidence 34433444443346655556653332222 2235567788999887655443221 11234556677 5678887
Q ss_pred EEe
Q psy12591 108 FKR 110 (144)
Q Consensus 108 i~~ 110 (144)
|+.
T Consensus 104 v~a 106 (329)
T 2bw0_A 104 VLP 106 (329)
T ss_dssp EES
T ss_pred EEe
Confidence 764
No 249
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=35.88 E-value=62 Score=18.43 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.9
Q ss_pred CCceEEecCCchHHHHHHHHHHH
Q psy12591 16 FEYFTRTIPSDHHQVKAMVEIVK 38 (144)
Q Consensus 16 ~p~ffRt~p~d~~~~~a~~~ll~ 38 (144)
-.+++|..|.+..|...+-+|..
T Consensus 8 ~~~~~rV~~~~~~q~~~L~~L~~ 30 (78)
T 2gjf_A 8 SKTIFVIVPTNEEQVAFLEALAK 30 (78)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHT
T ss_pred CeeEEEEEcCCHHHHHHHHHHHh
Confidence 46899999999988888777754
No 250
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=35.54 E-value=21 Score=24.57 Aligned_cols=15 Identities=27% Similarity=0.020 Sum_probs=6.1
Q ss_pred HHHHHHHHhhhCceE
Q psy12591 58 AFEELEVLLAKYSIC 72 (144)
Q Consensus 58 ~~~~~~~~l~~~Gi~ 72 (144)
+...|..+|..+|+.
T Consensus 24 Fv~~L~~~L~~~gi~ 38 (176)
T 3jrn_A 24 FISFLYKELVRRSIR 38 (176)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCE
Confidence 333344444444443
No 251
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=35.51 E-value=1.3e+02 Score=21.96 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCce
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSI 71 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi 71 (144)
..+..-+..+++.|...|.++|+++..... ......+.|.+.+++.|+
T Consensus 166 ~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 215 (348)
T 3bil_A 166 SNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSKI 215 (348)
T ss_dssp EECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred eChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCc
Confidence 344444566777777779999999976532 234567788889999886
No 252
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=35.15 E-value=90 Score=22.47 Aligned_cols=74 Identities=8% Similarity=-0.074 Sum_probs=44.7
Q ss_pred hCCCcEEEEEEEeCCcch--HHHHHHHHHhhhCceEEEEEecccCC--CCCcchhhHHHHH-HHHhcCCCceEEEEeeEE
Q psy12591 39 KLGWSYVSIIYEESNYGV--KAFEELEVLLAKYSICIAIKEKLVKD--SGVAEETAYDDIV-LKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 39 ~f~W~~Vaii~~~~~~g~--~~~~~~~~~l~~~Gi~V~~~~~~~~~--~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~ 113 (144)
+|.-.+|+++-.++.-|. ...+.+.+.|+++|..|.-.-..... ..+ +=.++...+ ..+.+..-.+.|++|.+.
T Consensus 16 ~~~~mkiali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~sv-DYPd~a~~vA~~V~~g~~d~GIliCGTG 94 (231)
T 3c5y_A 16 YFQGMKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASL-TYVMNGLLAGILLNSGAADFVVTGCGTG 94 (231)
T ss_dssp ---CCEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCC-CHHHHHHHHHHHHHHTSCSEEEEEESSS
T ss_pred HhhcceEEEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHcCCCCeEEEEcCCc
Confidence 344568999988887777 67899999999999988755444211 110 112333333 334433445788888763
No 253
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=35.08 E-value=90 Score=20.11 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=51.5
Q ss_pred cCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCC
Q psy12591 23 IPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKP 102 (144)
Q Consensus 23 ~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 102 (144)
.+....-...+.++++.....++-|... ....++.+...|++.|+.+... ..+- +..+-...+.+.+ ..
T Consensus 11 ~~~~~~K~~~l~~ll~~~~~~~~lVF~~----~~~~~~~l~~~L~~~~~~~~~~---~~~~---~~~~r~~~~~~f~-~g 79 (165)
T 1fuk_A 11 VEEEEYKYECLTDLYDSISVTQAVIFCN----TRRKVEELTTKLRNDKFTVSAI---YSDL---PQQERDTIMKEFR-SG 79 (165)
T ss_dssp EESGGGHHHHHHHHHHHTTCSCEEEEES----SHHHHHHHHHHHHHTTCCEEEE---CTTS---CHHHHHHHHHHHH-TT
T ss_pred CCcchhHHHHHHHHHHhCCCCCEEEEEC----CHHHHHHHHHHHHHcCCCEEEE---ECCC---CHHHHHHHHHHHH-cC
Confidence 3344335567888888877766555443 2356677888888888765432 2221 1344556777787 45
Q ss_pred CceEEEEeeEEeeeCCcch
Q psy12591 103 RARGLFKRLKLVKDSGVAE 121 (144)
Q Consensus 103 ~arvii~~~~~~~~~g~~~ 121 (144)
..+++| ++.+.+.|++.
T Consensus 80 ~~~vlv--~T~~~~~G~d~ 96 (165)
T 1fuk_A 80 SSRILI--STDLLARGIDV 96 (165)
T ss_dssp SCSEEE--EEGGGTTTCCC
T ss_pred CCEEEE--EcChhhcCCCc
Confidence 556554 44566677765
No 254
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=34.75 E-value=1.2e+02 Score=21.30 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHhC-C--CcEEEEEEEeCCc--chHHHHHHHHHhhhC-ceEEEE
Q psy12591 26 DHHQVKAMVEIVKKL-G--WSYVSIIYEESNY--GVKAFEELEVLLAKY-SICIAI 75 (144)
Q Consensus 26 d~~~~~a~~~ll~~f-~--W~~Vaii~~~~~~--g~~~~~~~~~~l~~~-Gi~V~~ 75 (144)
+..-+..+++.|... | -++|+++...... ...-.+.|.+.+++. |+.+..
T Consensus 114 ~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~ 169 (288)
T 1gud_A 114 NVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA 169 (288)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEE
Confidence 333445566765444 7 8999999865432 234567788888877 887643
No 255
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=34.64 E-value=1e+02 Score=23.87 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCcE--------EEEEEEeCCc---------c---hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhH
Q psy12591 32 AMVEIVKKLGWSY--------VSIIYEESNY---------G---VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAY 91 (144)
Q Consensus 32 a~~~ll~~f~W~~--------Vaii~~~~~~---------g---~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~ 91 (144)
..+.+|...|..+ |+|+...|+- | ......+...+++.|+.+.....++.+ ...+
T Consensus 162 ~~i~llas~G~~~V~V~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd-----~~~i 236 (402)
T 1uz5_A 162 KQTALLSAVGINKVKVFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDD-----KESL 236 (402)
T ss_dssp HHHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSS-----HHHH
T ss_pred HHHHHHHhCCCceeeecCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCC-----HHHH
Confidence 3345666666544 5667665543 2 234567888888899888777666654 4667
Q ss_pred HHHHHHHhcCCCceEEEEee
Q psy12591 92 DDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 92 ~~~l~~lk~~~~arvii~~~ 111 (144)
.+.|.+.. .++++||...
T Consensus 237 ~~~l~~a~--~~~DlVittG 254 (402)
T 1uz5_A 237 KALIEKAV--NVGDVVVISG 254 (402)
T ss_dssp HHHHHHHH--HHCSEEEEEC
T ss_pred HHHHHHHh--hCCCEEEEcC
Confidence 77777665 2477776654
No 256
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=34.49 E-value=42 Score=23.71 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=33.3
Q ss_pred CCchHHHHHHHHHHH-----hCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCC
Q psy12591 24 PSDHHQVKAMVEIVK-----KLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKD 82 (144)
Q Consensus 24 p~d~~~~~a~~~ll~-----~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~ 82 (144)
+++...++.+++++. ...=++|.++..+ ...+.+.+.|++.|+.|.....|...
T Consensus 110 ~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~ 168 (254)
T 4es6_A 110 PEQGDDSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRR 168 (254)
T ss_dssp CSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEE
T ss_pred CCCCCCHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEee
Confidence 334445677777664 2334567666533 23466788888999888766655443
No 257
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=34.44 E-value=63 Score=23.51 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCcEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 41 GWSYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 41 ~W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.-..|+++..+ +.|.....+.+++.+++.|..+.....-. .......++.+. ..+.+.||+..
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-------~~~~~~~~~~l~-~~~vdGiIi~~ 127 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-------VQAQDVVMESLI-SIQAAGIIHVP 127 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-------HHHHHHHHHHHH-HHTCSEEEECC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-------hHHHHHHHHHHH-hCCCCEEEEcc
Confidence 34568888754 45778899999999999998876543211 122345556565 34566666543
No 258
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=34.19 E-value=98 Score=20.24 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEE
Q psy12591 28 HQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL 107 (144)
Q Consensus 28 ~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvi 107 (144)
.-...+.++++.....++-|.. + .....+.+.+.|.+.|+.+... ..+- +..+-...+.+.+ ....+++
T Consensus 17 ~K~~~L~~ll~~~~~~~~lVF~-~---~~~~~~~l~~~L~~~~~~~~~~---hg~~---~~~~r~~~~~~f~-~g~~~vL 85 (172)
T 1t5i_A 17 EKNRKLFDLLDVLEFNQVVIFV-K---SVQRCIALAQLLVEQNFPAIAI---HRGM---PQEERLSRYQQFK-DFQRRIL 85 (172)
T ss_dssp GHHHHHHHHHHHSCCSSEEEEC-S---SHHHHHHHHHHHHHTTCCEEEE---CTTS---CHHHHHHHHHHHH-TTSCSEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEE-C---CHHHHHHHHHHHHhcCCCEEEE---ECCC---CHHHHHHHHHHHH-CCCCcEE
Confidence 3456778888887776654443 2 2356777888888888766432 2221 1344456777887 4556655
Q ss_pred EEeeEEeeeCCcch
Q psy12591 108 FKRLKLVKDSGVAE 121 (144)
Q Consensus 108 i~~~~~~~~~g~~~ 121 (144)
| ++.+.+.|++.
T Consensus 86 v--aT~~~~~Gldi 97 (172)
T 1t5i_A 86 V--ATNLFGRGMDI 97 (172)
T ss_dssp E--ESSCCSTTCCG
T ss_pred E--ECCchhcCcch
Confidence 4 44666777765
No 259
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=33.93 E-value=1.2e+02 Score=21.14 Aligned_cols=79 Identities=8% Similarity=-0.038 Sum_probs=46.4
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCC
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR 103 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~ 103 (144)
......+.+++..+..-||+ |.++..+.+ ..+.+.+.+++.|..+.... ..-. +..++...+.++++..+
T Consensus 14 Gas~GIG~aia~~l~~~G~~-V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~-~Dv~----~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 14 GAGDYIGAEIAKKFAAEGFT-VFAGRRNGE----KLAPLVAEIEAAGGRIVARS-LDAR----NEDEVTAFLNAADAHAP 83 (252)
T ss_dssp CCSSHHHHHHHHHHHHTTCE-EEEEESSGG----GGHHHHHHHHHTTCEEEEEE-CCTT----CHHHHHHHHHHHHHHSC
T ss_pred CCCchHHHHHHHHHHHCCCE-EEEEeCCHH----HHHHHHHHHHhcCCeEEEEE-CcCC----CHHHHHHHHHHHHhhCC
Confidence 44567899999988777985 555543322 33445556666665544322 2111 36778888888874334
Q ss_pred ceEEEEeeE
Q psy12591 104 ARGLFKRLK 112 (144)
Q Consensus 104 arvii~~~~ 112 (144)
.+++|-.+.
T Consensus 84 id~lv~nAg 92 (252)
T 3h7a_A 84 LEVTIFNVG 92 (252)
T ss_dssp EEEEEECCC
T ss_pred ceEEEECCC
Confidence 556665554
No 260
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=33.23 E-value=1.2e+02 Score=21.17 Aligned_cols=88 Identities=6% Similarity=-0.067 Sum_probs=52.1
Q ss_pred ceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHH
Q psy12591 18 YFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLK 97 (144)
Q Consensus 18 ~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~ 97 (144)
..+=| ....-.+.+++..+..-||+ |.++. .........+.+.+.+++.|..+.... ..-. +..+..+.+.+
T Consensus 13 ~vlVT-Gas~GIG~aia~~la~~G~~-V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dv~----d~~~v~~~~~~ 84 (262)
T 3ksu_A 13 VIVIA-GGIKNLGALTAKTFALESVN-LVLHY-HQAKDSDTANKLKDELEDQGAKVALYQ-SDLS----NEEEVAKLFDF 84 (262)
T ss_dssp EEEEE-TCSSHHHHHHHHHHTTSSCE-EEEEE-SCGGGHHHHHHHHHHHHTTTCEEEEEE-CCCC----SHHHHHHHHHH
T ss_pred EEEEE-CCCchHHHHHHHHHHHCCCE-EEEEe-cCccCHHHHHHHHHHHHhcCCcEEEEE-CCCC----CHHHHHHHHHH
Confidence 34433 45567899999988888986 33332 222333456667777777776654332 2211 35677788877
Q ss_pred HhcC-CCceEEEEeeEE
Q psy12591 98 LLTK-PRARGLFKRLKL 113 (144)
Q Consensus 98 lk~~-~~arvii~~~~~ 113 (144)
+.+. .+.+++|.++..
T Consensus 85 ~~~~~g~iD~lvnnAg~ 101 (262)
T 3ksu_A 85 AEKEFGKVDIAINTVGK 101 (262)
T ss_dssp HHHHHCSEEEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 7632 356677766543
No 261
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=32.77 E-value=1.1e+02 Score=23.77 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCc-----EEEEEEEe-CCcchHHHHHHHHHhhhCceEEEEEe
Q psy12591 31 KAMVEIVKKLGWS-----YVSIIYEE-SNYGVKAFEELEVLLAKYSICIAIKE 77 (144)
Q Consensus 31 ~a~~~ll~~f~W~-----~Vaii~~~-~~~g~~~~~~~~~~l~~~Gi~V~~~~ 77 (144)
+..-+||+.-||+ .+.+++.+ +......++.++..+++.||.+....
T Consensus 311 ~kAk~LL~eAG~~~g~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~ 363 (486)
T 3rqt_A 311 EQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKANIEIDIKS 363 (486)
T ss_dssp HHHHHHHHTTTCCSSSCEEEEEEECSSSTHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred HHHHHHHHHCCCCCCCceEEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4445678888985 34455533 33456789999999999999887543
No 262
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=32.17 E-value=94 Score=24.29 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCc-----EEEEEEEeCCcchHHHHHHHHHhhh-CceEEEEE
Q psy12591 31 KAMVEIVKKLGWS-----YVSIIYEESNYGVKAFEELEVLLAK-YSICIAIK 76 (144)
Q Consensus 31 ~a~~~ll~~f~W~-----~Vaii~~~~~~g~~~~~~~~~~l~~-~Gi~V~~~ 76 (144)
+..-+||+.-||. .+-+++..++.....++.++..+++ .||.+...
T Consensus 332 ~kAk~LL~eAG~~~G~~~~l~l~~~~~~~~~~~a~~i~~~l~~~iGI~v~i~ 383 (506)
T 3zs6_A 332 DYAKNLLKQAGHGDANPLTFTLTYNTNDLHKKVALFAASEWRTKLGVTAKLE 383 (506)
T ss_dssp HHHHHHHHHTTCSTTSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHcCCCCCCCceEEEEEcCCchHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4455688888997 4566666555556788899999998 99988754
No 263
>3v8e_A Nicotinamidase; hydrolase; HET: JJJ; 2.71A {Saccharomyces cerevisiae} PDB: 2h0r_A
Probab=31.99 E-value=1.3e+02 Score=20.89 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchh--hHHHHHHHHhcCCCceEE
Q psy12591 30 VKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEET--AYDDIVLKLLTKPRARGL 107 (144)
Q Consensus 30 ~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~--~~~~~l~~lk~~~~arvi 107 (144)
...+.++|+..|.+.+.+....+++|.... ...+...|..+.....--... +.. +-...|.+++ ..+++++
T Consensus 142 ~t~L~~~L~~~gi~~l~i~G~~t~~CV~~T---a~~a~~~g~~v~v~~Da~~~~---~~~~~~~~~al~~m~-~~Gv~i~ 214 (216)
T 3v8e_A 142 KTDMNKYLEKHHTDEVYIVGVALEYXVKAT---AISAAELGYKTTVLLDYTRPI---SDDPEVINKVKEELK-AHNINVV 214 (216)
T ss_dssp BCSHHHHHHHTTCCEEEEEEECTTTHHHHH---HHHHHHTTCEEEEEEEEEECS---SCCHHHHHHHHHHHH-HTTCEEE
T ss_pred CchHHHHHHhCCCCEEEEEEeccccHHHHH---HHHHHHCCCEEEEeccccCCC---CcccHHHHHHHHHHH-HcCCEEe
Confidence 345777888888999999888888875432 122334676655433222221 133 6677888888 5666553
No 264
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=31.87 E-value=76 Score=21.88 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=19.6
Q ss_pred CceEEecCCchHHHHHHHHHHHhCCCcE--EEEEEEe
Q psy12591 17 EYFTRTIPSDHHQVKAMVEIVKKLGWSY--VSIIYEE 51 (144)
Q Consensus 17 p~ffRt~p~d~~~~~a~~~ll~~f~W~~--Vaii~~~ 51 (144)
=-+.||.|.. |.+++.++...+|.. ++.|..|
T Consensus 119 lvVIkT~PG~---A~~vA~~ID~~~~~e~IlGTIAGD 152 (180)
T 3v4g_A 119 LVVIHTGPGA---AQLIARMLDSLGKSEGILGVVAGD 152 (180)
T ss_dssp CEEEEESTTC---HHHHHHHHHHHCGGGTEEEEEECS
T ss_pred EEEEEeCCCc---HHHHHHHHHhCCCCCCeEEEEecC
Confidence 3467888876 456667777666654 4544433
No 265
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=31.41 E-value=1.3e+02 Score=22.07 Aligned_cols=65 Identities=14% Similarity=0.023 Sum_probs=45.1
Q ss_pred cEEEEEEEeCCcc-hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 43 SYVSIIYEESNYG-VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 43 ~~Vaii~~~~~~g-~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
-..++|..+++-. ....+.-.+..++-|+ .....++.+. +++++-+.+.+|-..++..-|++...
T Consensus 28 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~---s~~ell~~I~~lN~D~~v~GIlvqlP 93 (276)
T 3ngx_A 28 PSLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDI---SMKDLLKRIDDLAKDPQINGIMIENP 93 (276)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSC---CHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCC---CHHHHHHHHHHHcCCCCCcEEEEeCC
Confidence 3567776655544 4456666777888999 4455677664 37788888988886677888887653
No 266
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=30.97 E-value=1.4e+02 Score=21.16 Aligned_cols=84 Identities=10% Similarity=-0.108 Sum_probs=48.6
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchH---HHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhc
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVK---AFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLT 100 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~---~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~ 100 (144)
......+.+++..+..-|| +|.++..+.+-... ..+...+.+++.|..+.... ..-. +..++.+.+.++++
T Consensus 16 Gas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dv~----~~~~v~~~~~~~~~ 89 (285)
T 3sc4_A 16 GGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIV-GDIR----DGDAVAAAVAKTVE 89 (285)
T ss_dssp SCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEE-CCTT----SHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEE-CCCC----CHHHHHHHHHHHHH
Confidence 4556788999988777798 45555544432222 23445555555565544332 2211 35677777777763
Q ss_pred C-CCceEEEEeeEE
Q psy12591 101 K-PRARGLFKRLKL 113 (144)
Q Consensus 101 ~-~~arvii~~~~~ 113 (144)
. .+.+++|.++..
T Consensus 90 ~~g~id~lvnnAg~ 103 (285)
T 3sc4_A 90 QFGGIDICVNNASA 103 (285)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HcCCCCEEEECCCC
Confidence 2 357777777644
No 267
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=30.95 E-value=1.3e+02 Score=21.07 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=36.8
Q ss_pred cEEEEEEEeCC-------cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 43 SYVSIIYEESN-------YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 43 ~~Vaii~~~~~-------~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
.+|.+|...-. .....++.+.+.+++.|..|.....- . ..|+..+..+|+. |++||+.+.
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~-~------~~Dv~~~~~~l~~---aD~iv~~~P 92 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD-Q------GYDIESEIENYLW---ADTIIYQMP 92 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG-G------CCCHHHHHHHHHH---CSEEEEEEE
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC-C------ccCHHHHHHHHHh---CCEEEEECC
Confidence 46777764332 33456777788888888777654322 1 2357788888883 555555443
No 268
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=30.89 E-value=38 Score=26.03 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHhcCCCceEEE
Q psy12591 87 EETAYDDIVLKLLTKPRARGLF 108 (144)
Q Consensus 87 ~~~~~~~~l~~lk~~~~arvii 108 (144)
+.++|+++++++. +.+-+||+
T Consensus 75 t~~df~~lv~~aH-~~Gi~Vil 95 (496)
T 4gqr_A 75 NEDEFRNMVTRCN-NVGVRIYV 95 (496)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 5789999999999 67888876
No 269
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=30.84 E-value=1.2e+02 Score=20.36 Aligned_cols=70 Identities=6% Similarity=0.022 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceE
Q psy12591 30 VKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106 (144)
Q Consensus 30 ~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arv 106 (144)
...+.++|+..|.+++.+....+++|.... ...+...|..+.....--... +..+-...|.+++ ..++++
T Consensus 113 ~t~L~~~L~~~gi~~lvv~G~~t~~CV~~T---a~da~~~G~~v~v~~Da~~~~---~~~~~~~al~~m~-~~G~~i 182 (186)
T 3gbc_A 113 GTPLLNWLRQRGVDEVDVVGIATDHCVRQT---AEDAVRNGLATRVLVDLTAGV---SADTTVAALEEMR-TASVEL 182 (186)
T ss_dssp SCBHHHHHHHTTCCEEEEEEECTTTHHHHH---HHHHHHTTCEEEEEEEEEECS---CHHHHHHHHHHHH-HTTCEE
T ss_pred CCcHHHHHHhcCCCEEEEEEecccHHHHHH---HHHHHHCCCeEEEEhhhcCCC---CHHHHHHHHHHHH-HcCCEE
Confidence 457888999999999999999999985432 123335687765543322222 2556777888898 566654
No 270
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=30.39 E-value=97 Score=19.16 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEEEeCCcchHH-HHHHHHHhhhCceEEEEEecc
Q psy12591 26 DHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKA-FEELEVLLAKYSICIAIKEKL 79 (144)
Q Consensus 26 d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~-~~~~~~~l~~~Gi~V~~~~~~ 79 (144)
......++.+++..+| ...|.+|. |..+ ...+...++..|+........
T Consensus 38 ~~~~~~~l~~~~~~~g---p~~i~sDn--G~~f~s~~~~~~~~~~gi~~~~~~p~ 87 (152)
T 3kks_A 38 ALQVALCILQLIQRYT---VLHLHSDN--GPCFTAHRIENLCKYLGITKTTGIPY 87 (152)
T ss_dssp HHHHHHHHHHHHHHSC---CSEEEECS--CHHHHSHHHHHHHHHTTCEEEESSCS
T ss_pred HHHHHHHHHHHHHHhC---CcEEecCC--chHhhHHHHHHHHHHcCCeecccCCc
Confidence 3345556667778888 44555544 4443 355788888999987755443
No 271
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=30.04 E-value=1.2e+02 Score=23.33 Aligned_cols=73 Identities=22% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHHHHHhCCCcE--------EEEEEEeCCc-----------c---hHHHHHHHHHhhhCceEEEEEecccCCCCCcchh
Q psy12591 32 AMVEIVKKLGWSY--------VSIIYEESNY-----------G---VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEET 89 (144)
Q Consensus 32 a~~~ll~~f~W~~--------Vaii~~~~~~-----------g---~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~ 89 (144)
..+.+|...|..+ |+|+...|+- | ......+...+++.|+.+.....++.+ ..
T Consensus 164 ~~i~llas~G~~~V~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd-----~~ 238 (396)
T 1wu2_A 164 QDVAMLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDD-----ES 238 (396)
T ss_dssp HHHHHHHHTTCSEEEEECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSC-----HH
T ss_pred HHHHHHHhCCCceeeecCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCC-----HH
Confidence 3345666666544 5667665432 2 124567888899999988777666654 45
Q ss_pred hHHHHHHHHhcCCCceEEEEee
Q psy12591 90 AYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 90 ~~~~~l~~lk~~~~arvii~~~ 111 (144)
.+.+.|.+.. .++++||...
T Consensus 239 ~i~~~l~~a~--~~~DlvittG 258 (396)
T 1wu2_A 239 IIKETLEKAK--NECDIVLITG 258 (396)
T ss_dssp HHTTHHHHHH--HCSEEEECC-
T ss_pred HHHHHHHHHh--hCCCEEEEeC
Confidence 6777776665 2478887654
No 272
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=29.83 E-value=89 Score=24.53 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCc-----EEEEEEEeCCcchHHHHHHHHHhhh-CceEEEEE
Q psy12591 31 KAMVEIVKKLGWS-----YVSIIYEESNYGVKAFEELEVLLAK-YSICIAIK 76 (144)
Q Consensus 31 ~a~~~ll~~f~W~-----~Vaii~~~~~~g~~~~~~~~~~l~~-~Gi~V~~~ 76 (144)
+..-+||+.-||+ .+-+++..+......++.++..+++ .||.+...
T Consensus 344 ~kAk~LL~eaG~~~G~~l~l~l~~~~~~~~~~~a~~i~~~l~~~iGI~v~i~ 395 (519)
T 3o9p_A 344 AQAKTLLSAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQ 395 (519)
T ss_dssp HHHHHHHHHHTCBTTBCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHcCCCCCCCceEEEEecCCchhHHHHHHHHHHHHHhcCcEEEEE
Confidence 4445688888887 4666666555556788899999998 99988654
No 273
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=29.75 E-value=1e+02 Score=23.97 Aligned_cols=47 Identities=6% Similarity=-0.104 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 58 AFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 58 ~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
....+...+++.|+.+.....++.+ ...+.+.|.+.. .++++||...
T Consensus 209 N~~~L~~~l~~~G~~v~~~~iv~Dd-----~~~i~~~l~~a~--~~~DlVittG 255 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINLGIVGDN-----PDDLLNALNEGI--SRADVIITSG 255 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEECSS-----HHHHHHHHHHHH--HHCSEEEEES
T ss_pred chHHHHHHHHHCCCEEEEEeecCCC-----HHHHHHHHHHHH--hcCCEEEEcC
Confidence 4566788888888877766666544 456666666654 2367776554
No 274
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=29.54 E-value=1.3e+02 Score=20.04 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEE-ecccCCCCCcchhhHHHHHHHHhcCCCceE
Q psy12591 28 HQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIK-EKLVKDSGVAEETAYDDIVLKLLTKPRARG 106 (144)
Q Consensus 28 ~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~~arv 106 (144)
.--..+.++++..+-..=++|+.++ ...++.+.+.|+..|+.+... ...+ ..+-...+.+.+ ....++
T Consensus 31 ~K~~~L~~ll~~~~~~~k~lVF~~~---~~~~~~l~~~L~~~g~~~~~lhg~~~-------~~~r~~~~~~f~-~g~~~v 99 (185)
T 2jgn_A 31 DKRSFLLDLLNATGKDSLTLVFVET---KKGADSLEDFLYHEGYACTSIHGDRS-------QRDREEALHQFR-SGKSPI 99 (185)
T ss_dssp GHHHHHHHHHHHC-CCSCEEEEESC---HHHHHHHHHHHHHTTCCEEEEC---------------CHHHHHHH-HTSSSE
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECC---HHHHHHHHHHHHHcCCceEEEeCCCC-------HHHHHHHHHHHH-cCCCeE
Confidence 3446778888876433334444433 356777888888888765432 2222 222345667777 455665
Q ss_pred EEEeeEEeeeCCcch
Q psy12591 107 LFKRLKLVKDSGVAE 121 (144)
Q Consensus 107 ii~~~~~~~~~g~~~ 121 (144)
+| ++.+.+.|++.
T Consensus 100 Lv--aT~~~~~Gldi 112 (185)
T 2jgn_A 100 LV--ATAVAARGLDI 112 (185)
T ss_dssp EE--EEC------CC
T ss_pred EE--EcChhhcCCCc
Confidence 43 44566677665
No 275
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}
Probab=28.90 E-value=2.2e+02 Score=22.63 Aligned_cols=85 Identities=6% Similarity=-0.013 Sum_probs=48.3
Q ss_pred ecCCchHHHHHHHHHHHhCCCcEEEEE-EEeCCc-----c----hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhH
Q psy12591 22 TIPSDHHQVKAMVEIVKKLGWSYVSII-YEESNY-----G----VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAY 91 (144)
Q Consensus 22 t~p~d~~~~~a~~~ll~~f~W~~Vaii-~~~~~~-----g----~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~ 91 (144)
......-.+..++..|..-|++.+.++ .-+..- . ....+.+.+.+++.|..+.+.. .... +..++
T Consensus 256 ITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~-~Dvt----d~~~v 330 (525)
T 3qp9_A 256 VTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVT-CDLT----DAEAA 330 (525)
T ss_dssp ESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEE-CCTT----SHHHH
T ss_pred EECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEE-CCCC----CHHHH
Confidence 334556688888887766799888777 433110 0 1233455666777777665432 2211 36678
Q ss_pred HHHHHHHhcCCCceEEEEee
Q psy12591 92 DDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 92 ~~~l~~lk~~~~arvii~~~ 111 (144)
...+.+++.....++||-.+
T Consensus 331 ~~~~~~i~~~g~id~vVh~A 350 (525)
T 3qp9_A 331 ARLLAGVSDAHPLSAVLHLP 350 (525)
T ss_dssp HHHHHTSCTTSCEEEEEECC
T ss_pred HHHHHHHHhcCCCcEEEECC
Confidence 88888876223455555444
No 276
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=28.65 E-value=1e+02 Score=19.99 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhhCceEEEE
Q psy12591 56 VKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 56 ~~~~~~~~~~l~~~Gi~V~~ 75 (144)
..+.+.|.+..+..|+.+..
T Consensus 29 ~~F~~~L~~~~~~~Gm~i~~ 48 (147)
T 4g0x_A 29 RTFCQELAQMCYVSGMAFNP 48 (147)
T ss_dssp HHHHHHHHHHHHHTTCEECS
T ss_pred HHHHHHHHHHHHHcCCCCCC
Confidence 34677777888889998864
No 277
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=28.33 E-value=1.1e+02 Score=21.13 Aligned_cols=80 Identities=10% Similarity=-0.047 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcch-------hhHHHHHHHHhcCCC
Q psy12591 31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEE-------TAYDDIVLKLLTKPR 103 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~-------~~~~~~l~~lk~~~~ 103 (144)
...++.++..|++.|-+... .......+.+++.+++.|+.+........-.. ++. ..+...+...+ .-+
T Consensus 21 ~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~-~d~~~r~~~~~~~~~~i~~a~-~lG 96 (275)
T 3qc0_A 21 AEAVDICLKHGITAIAPWRD--QVAAIGLGEAGRIVRANGLKLTGLCRGGFFPA-PDASGREKAIDDNRRAVDEAA-ELG 96 (275)
T ss_dssp HHHHHHHHHTTCCEEECBHH--HHHHHCHHHHHHHHHHHTCEESCEEEEECCCC-SSHHHHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHcCCCEEEeccc--cccccCHHHHHHHHHHcCCceEEeecCCCcCC-CCHHHHHHHHHHHHHHHHHHH-HhC
Confidence 45677788899998887432 12234567889999999988754332211110 011 23444444444 467
Q ss_pred ceEEEEeeEEe
Q psy12591 104 ARGLFKRLKLV 114 (144)
Q Consensus 104 arvii~~~~~~ 114 (144)
++.|+++....
T Consensus 97 ~~~v~~~~g~~ 107 (275)
T 3qc0_A 97 ADCLVLVAGGL 107 (275)
T ss_dssp CSCEEEECBCC
T ss_pred CCEEEEeeCCC
Confidence 88888776433
No 278
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=28.27 E-value=74 Score=23.72 Aligned_cols=74 Identities=11% Similarity=0.048 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEEE-eCCcchHH---HHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcC
Q psy12591 26 DHHQVKAMVEIVKKLGWSYVSIIYE-ESNYGVKA---FEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK 101 (144)
Q Consensus 26 d~~~~~a~~~ll~~f~W~~Vaii~~-~~~~g~~~---~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 101 (144)
+..-...+-.|+. -++.-+++++. |...|++. ...+++.+.+.|+.+.....+. +. +.+..|+ .
T Consensus 11 p~fa~~~L~~L~~-~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~~~~~~-------~~---~~~~~l~-~ 78 (314)
T 3tqq_A 11 PQFAVPTLRALID-SSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQPFSLR-------DE---VEQEKLI-A 78 (314)
T ss_dssp SGGGHHHHHHHHH-SSSEEEEEECCCC----------CCHHHHHHHHTTCCEECCSCSS-------SH---HHHHHHH-T
T ss_pred CHHHHHHHHHHHH-CCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEECcccCC-------CH---HHHHHHH-h
Confidence 3333344444444 47777777764 33444432 2456778888999864222221 22 3455666 5
Q ss_pred CCceEEEEee
Q psy12591 102 PRARGLFKRL 111 (144)
Q Consensus 102 ~~arvii~~~ 111 (144)
.+++++|+..
T Consensus 79 ~~~Dliv~~~ 88 (314)
T 3tqq_A 79 MNADVMVVVA 88 (314)
T ss_dssp TCCSEEEEES
T ss_pred cCCCEEEEcC
Confidence 6688877753
No 279
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=28.05 E-value=1.8e+02 Score=22.74 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCc---EEEEEEEe-CCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 32 AMVEIVKKLGWS---YVSIIYEE-SNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 32 a~~~ll~~f~W~---~Vaii~~~-~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
..-+||+.-||+ .+-+++.. +......++.++..|++.||.+...
T Consensus 330 kAk~LL~eaG~~~g~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~ 378 (509)
T 1uqw_A 330 KARELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVT 378 (509)
T ss_dssp HHHHHHHHHTCTTCEEEEEEEECCSSSHHHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHcCCCCCceEEEEecCCCchHHHHHHHHHHHHHHcCCEEEEE
Confidence 334577777885 46666553 4455678999999999999988654
No 280
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=27.99 E-value=2e+02 Score=22.74 Aligned_cols=49 Identities=14% Similarity=-0.003 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEe
Q psy12591 29 QVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKE 77 (144)
Q Consensus 29 ~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~ 77 (144)
.+.+++.+++..+...|.|=++....+..+.+.+...+...|+.|....
T Consensus 49 ig~A~~~~l~~~~~~~VvVG~D~R~ss~~~~~a~a~gl~a~Gi~V~~~g 97 (485)
T 3uw2_A 49 IGRAFGSEVRAQGGDAVVVARDGRLSGPELVGALADGLRAAGVDVVDVG 97 (485)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCcCHHHHHHHHHHHHHHCCCEEEEeC
Confidence 4566777776555566666666666777889999999999999987643
No 281
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=27.85 E-value=2e+02 Score=21.89 Aligned_cols=88 Identities=11% Similarity=-0.049 Sum_probs=50.8
Q ss_pred CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591 16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV 95 (144)
Q Consensus 16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l 95 (144)
.||-....+.... .+.++++.. +++.+|++...+. ..+.+.+.|++.|+.+... .++.+...++.+.+.+.+
T Consensus 22 ~~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~ 93 (368)
T 3qbe_A 22 PPYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIW 93 (368)
T ss_dssp SCEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHH
T ss_pred CCceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHH
Confidence 3444444444322 344555543 8888888766543 3678889999999876432 233332112355677777
Q ss_pred HHHhc--CCCceEEEEee
Q psy12591 96 LKLLT--KPRARGLFKRL 111 (144)
Q Consensus 96 ~~lk~--~~~arvii~~~ 111 (144)
+.+++ ..+.+.||...
T Consensus 94 ~~l~~~~~~r~d~IIavG 111 (368)
T 3qbe_A 94 EVLGRIGIGRKDALVSLG 111 (368)
T ss_dssp HHHHHHTCCTTCEEEEEE
T ss_pred HHHHHcCCCCCcEEEEEC
Confidence 77763 23467777654
No 282
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=27.63 E-value=44 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.6
Q ss_pred chhhHHHHHHHHhcCCCceEEE
Q psy12591 87 EETAYDDIVLKLLTKPRARGLF 108 (144)
Q Consensus 87 ~~~~~~~~l~~lk~~~~arvii 108 (144)
+.++|+++++++. +.+-+||+
T Consensus 73 t~~d~~~lv~~~h-~~Gi~Vil 93 (471)
T 1jae_A 73 DESAFTDMTRRCN-DAGVRIYV 93 (471)
T ss_dssp EHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 4789999999998 67888876
No 283
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.52 E-value=5 Score=22.70 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=18.5
Q ss_pred CcchhhhhHHHHHHH-hcCccccccc
Q psy12591 118 GVAEETAYDDIVLKL-LTKPRARAVS 142 (144)
Q Consensus 118 g~~~~~~~~~~~~~~-~~~~~~~~~~ 142 (144)
+|+..--++.+...+ +.-|+|+++.
T Consensus 17 ~V~s~wsweqamr~i~i~DPrY~al~ 42 (59)
T 2b7e_A 17 QVDSTWSFSRIISELGTRDPRYWMVD 42 (59)
T ss_dssp TCCSSCCHHHHHHHHHHHCTHHHHSC
T ss_pred CCCCCCcHHHHHHHhccCCCcccccc
Confidence 555555577777788 7899999885
No 284
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.37 E-value=1.4e+02 Score=21.72 Aligned_cols=60 Identities=5% Similarity=-0.018 Sum_probs=32.9
Q ss_pred EEEEEEEe-------CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591 44 YVSIIYEE-------SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL 111 (144)
Q Consensus 44 ~Vaii~~~-------~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~ 111 (144)
.|+++..+ +.|.....+.+++.++ |..+.....-... .......+..+. ..+.+.||+..
T Consensus 70 ~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~~~~-----~~~~~~~~~~l~-~~~vdGiIi~~ 136 (366)
T 3h5t_A 70 AIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPASPAS-----SVDHVSAQQLVN-NAAVDGVVIYS 136 (366)
T ss_dssp EEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECCCCT-----TCCHHHHHHHHH-TCCCSCEEEES
T ss_pred EEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcCCCc-----cHHHHHHHHHHH-hCCCCEEEEec
Confidence 47777654 3455566777777776 6555433211111 112445666666 56677776653
No 285
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=27.31 E-value=74 Score=20.51 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcC-CCceEEEEee
Q psy12591 56 VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK-PRARGLFKRL 111 (144)
Q Consensus 56 ~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~-~~arvii~~~ 111 (144)
..+.+.|.+..+..|+.+.....++... ....+.++.|+.+++. ++...+++..
T Consensus 29 ~~F~~~L~~~~~~~Gm~i~~p~~~~~~~--~~~~~~e~~l~~~~~~~~~~qlv~~il 83 (139)
T 4g0o_A 29 QEFCKQLIGMCVSKGMEFKPQPAIPFIS--CPPEHIEEALLDIHKRAPGLQLLIVIL 83 (139)
T ss_dssp HHHHHHHHHHHHHHTCEECSSCSSCCEE--CCGGGHHHHHHHHHHHCTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCccCCCCEEeeec--CCchhHHHHHHHHHHhcCCCcEEEEEE
Confidence 4577777777888899886322222110 0145667777777731 4566665544
No 286
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=27.09 E-value=1.4e+02 Score=23.24 Aligned_cols=46 Identities=7% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCc-------------EEEEEEEe-CCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 31 KAMVEIVKKLGWS-------------YVSIIYEE-SNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 31 ~a~~~ll~~f~W~-------------~Vaii~~~-~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
+..-+||+.-||+ .+-+++.. +......++.++..+++.||.+...
T Consensus 305 ~kAk~LL~eaG~~~~dG~~~~dG~~l~l~l~~~~~~~~~~~~a~~i~~~l~~iGI~v~i~ 364 (496)
T 3t66_A 305 DIAIQYLEEAGYTLENGQMQKDGEPLHFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIR 364 (496)
T ss_dssp HHHHHHHHHHTCEECC-CEEETTEECEEEEEECSSSTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCCCCCCcCccCCcEEEEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEE
Confidence 4445677777887 34455533 3344678899999999999998765
No 287
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=26.76 E-value=1.7e+02 Score=20.68 Aligned_cols=80 Identities=11% Similarity=-0.098 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCC
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR 103 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~ 103 (144)
....-.+.+++..+..-|++ |.++..+.+- .+.+.+.+.+.|..+.... .... +..+....+.++.+..+
T Consensus 40 Gas~GIG~aia~~la~~G~~-V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~-~Dv~----~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 40 GSSRGIGAAIAEGLAGAGAH-VILHGVKPGS----TAAVQQRIIASGGTAQELA-GDLS----EAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TCSSHHHHHHHHHHHHTTCE-EEEEESSTTT----THHHHHHHHHTTCCEEEEE-CCTT----STTHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHCCCE-EEEEcCCHHH----HHHHHHHHHhcCCeEEEEE-ecCC----CHHHHHHHHHHHHHhCC
Confidence 45567888999887777984 5555443332 2334445555554443322 1111 24567777777664345
Q ss_pred ceEEEEeeEE
Q psy12591 104 ARGLFKRLKL 113 (144)
Q Consensus 104 arvii~~~~~ 113 (144)
.+++|.++..
T Consensus 110 iD~lvnnAg~ 119 (275)
T 4imr_A 110 VDILVINASA 119 (275)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 7777776643
No 288
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=26.58 E-value=38 Score=22.14 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=42.4
Q ss_pred HhCCCcEEEEEEEeCCcc-hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 38 KKLGWSYVSIIYEESNYG-VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 38 ~~f~W~~Vaii~~~~~~g-~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
...+|+.+-+.. ..+++ .+....+...|.++||.|-....|..+--.-++.+..+.++-|+
T Consensus 58 ~~~~wr~i~v~~-~l~~~~vGilA~is~pLA~agIsif~iSty~tD~IlVp~~~~~~Ai~aL~ 119 (134)
T 1zhv_A 58 VDPGWSCFKFQG-PFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLA 119 (134)
T ss_dssp EEEEEEEEEECS-CCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEEEEGGGHHHHHHHHH
T ss_pred cCCCeEEEEEec-CCCccHHHHHHHHHHHHHhCCCCeEEEEeccccEEEEeHHHHHHHHHHHH
Confidence 456788877763 22332 46788899999999998877776654321124678888888888
No 289
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.55 E-value=1.7e+02 Score=20.61 Aligned_cols=59 Identities=10% Similarity=0.150 Sum_probs=37.2
Q ss_pred HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 38 KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 38 ~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
+.++ ++|+++...+.. ...+.+.+.+ |+.+.... +. +.++....+.+++ ..+.++||--
T Consensus 103 ~~~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~~-~~------~~ee~~~~i~~l~-~~G~~vVVG~ 161 (225)
T 2pju_A 103 GKLT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQRS-YI------TEEDARGQINELK-ANGTEAVVGA 161 (225)
T ss_dssp TCTT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEEE-ES------SHHHHHHHHHHHH-HTTCCEEEES
T ss_pred HhhC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEEE-eC------CHHHHHHHHHHHH-HCCCCEEECC
Confidence 3444 689999765533 2344555555 44443321 21 2578899999999 6889998863
No 290
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=26.42 E-value=1.9e+02 Score=20.99 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=41.8
Q ss_pred cEEEEEEEeCCcc----------hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcC--CCceEEEEe
Q psy12591 43 SYVSIIYEESNYG----------VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK--PRARGLFKR 110 (144)
Q Consensus 43 ~~Vaii~~~~~~g----------~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~--~~arvii~~ 110 (144)
+.+++|..+..|. ..=++.+.+.|++.|..|...... +..++...|+++... .+.+.++++
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dl-------t~~em~~~l~~~~~~dh~~~d~~v~~ 104 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNL-------KSEEINKFIQQTAEMDHSDADCLLVA 104 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESC-------CHHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCc-------CHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 5688888887775 223688899999999988655433 256788888888642 345555444
No 291
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=26.34 E-value=2e+02 Score=22.57 Aligned_cols=46 Identities=17% Similarity=0.393 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCc--------------EEEEEEEeCC-cchHHHHHHHHHhhhCceEEEEE
Q psy12591 31 KAMVEIVKKLGWS--------------YVSIIYEESN-YGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 31 ~a~~~ll~~f~W~--------------~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
+..-+||+.-||+ .+-+++..++ .....++.++..+++.||.+...
T Consensus 334 ~kAk~LL~eAG~~~~~dG~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~ 394 (528)
T 3ry3_A 334 DKAKQILEQAGWQLNSQGTREKNGLPAKITLWYTSGDTTRRDLAQALRSMLKPIGIDVDLK 394 (528)
T ss_dssp HHHHHHHHHTTCEECTTSSEEETTEECEEEEEEESSCHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred HHHHHHHHHcCCccCCCCEEccCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 4455677888885 4666665543 34568899999999999998765
No 292
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=26.29 E-value=46 Score=25.77 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHhcCCCceEEE
Q psy12591 87 EETAYDDIVLKLLTKPRARGLF 108 (144)
Q Consensus 87 ~~~~~~~~l~~lk~~~~arvii 108 (144)
+.++|+++++++. +.+-+||+
T Consensus 63 t~~dfk~Lv~~aH-~~Gi~Vil 83 (448)
T 1g94_A 63 NRAQFIDMVNRCS-AAGVDIYV 83 (448)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEE
T ss_pred CHHHHHHHHHHHH-HCCCEEEE
Confidence 5789999999999 67888875
No 293
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=26.16 E-value=1.7e+02 Score=20.54 Aligned_cols=85 Identities=11% Similarity=-0.067 Sum_probs=48.7
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchH---HHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhc
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVK---AFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLT 100 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~---~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~ 100 (144)
....-.+.+++..+..-|++ |.++..+.+-... ..+...+.++..|..+.... ..-. +..++.+.++++.+
T Consensus 13 Gas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dv~----~~~~v~~~~~~~~~ 86 (274)
T 3e03_A 13 GASRGIGLAIALRAARDGAN-VAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALK-CDIR----EEDQVRAAVAATVD 86 (274)
T ss_dssp TTTSHHHHHHHHHHHHTTCE-EEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEE-CCTT----CHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHCCCE-EEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEe-CCCC----CHHHHHHHHHHHHH
Confidence 44567889999888777984 6555544332221 23444555555555443321 2212 36677788877763
Q ss_pred C-CCceEEEEeeEEe
Q psy12591 101 K-PRARGLFKRLKLV 114 (144)
Q Consensus 101 ~-~~arvii~~~~~~ 114 (144)
. .+.+++|.++...
T Consensus 87 ~~g~iD~lvnnAG~~ 101 (274)
T 3e03_A 87 TFGGIDILVNNASAI 101 (274)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCcc
Confidence 2 3577877776443
No 294
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=26.14 E-value=1.1e+02 Score=21.14 Aligned_cols=41 Identities=7% Similarity=0.015 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEE
Q psy12591 28 HQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 28 ~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
..+..+...|..-||. +|+ .. +.+.+....+.+.+.|..+.
T Consensus 45 ~~A~~lg~~LA~~G~~---vVs-Gg--~~GiM~aa~~gAl~~GG~~i 85 (195)
T 1rcu_A 45 DICLELGRTLAKKGYL---VFN-GG--RDGVMELVSQGVREAGGTVV 85 (195)
T ss_dssp HHHHHHHHHHHHTTCE---EEE-CC--SSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCE---EEe-CC--HHHHHHHHHHHHHHcCCcEE
Confidence 4566667777666654 444 22 44567777777666554433
No 295
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=26.02 E-value=1.4e+02 Score=22.13 Aligned_cols=45 Identities=7% Similarity=0.054 Sum_probs=30.4
Q ss_pred HHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 64 VLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 64 ~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
-.++..|+.+.....+..+.. +...++..+++.+| ..+.++|+.-
T Consensus 202 Yfa~~yGl~~~~~~~i~~~~e-Ps~~~l~~l~~~ik-~~~v~~If~e 246 (307)
T 3ujp_A 202 YLARDYGMEEIYMWPINAEQQ-FTPKQVQTVIEEVK-TNNVPTIFCE 246 (307)
T ss_dssp HHHHHTTCEEEEEESSCCSSC-CCHHHHHHHHHHHH-TTTCSEEEEE
T ss_pred HHHHHCCCcEEEeeccCCCCC-CCHHHHHHHHHHHH-hcCCcEEEEe
Confidence 344556777765555543321 35789999999999 6788888763
No 296
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=25.99 E-value=1.4e+02 Score=19.44 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHh-CCCcEEEEEEEeCCcch-----HHHHHHHHHhhhCceEEEEEe---cccCCCCCcchhhHHHHHHHH
Q psy12591 28 HQVKAMVEIVKK-LGWSYVSIIYEESNYGV-----KAFEELEVLLAKYSICIAIKE---KLVKDSGVAEETAYDDIVLKL 98 (144)
Q Consensus 28 ~~~~a~~~ll~~-f~W~~Vaii~~~~~~g~-----~~~~~~~~~l~~~Gi~V~~~~---~~~~~~~~~~~~~~~~~l~~l 98 (144)
.|-..+-+++.. .||.-+.+..+....|. ...+.+.+.++...+.+.... .+..+ ..++-..+..|
T Consensus 27 ~Q~~~~~~~a~~~~g~~~~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g~id~vvv~~ldRl~R~-----~~~~~~~~~~l 101 (169)
T 3g13_A 27 SQVQYYTDMIKKNKEWVLADIYADEAITGTQVTKREDFQRMINDCMNGEIDMVFTKSISRFARN-----TLDTLKYVRML 101 (169)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEEEEEC------CCSHHHHHHHHHHHTTCCSEEEESCHHHHCSS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEEeeCCccCCCcCCCHHHHHHHHHHHcCCCcEEEEEeccccccC-----hHHHHHHHHHH
Confidence 355666667654 59987776655433343 334455555555544333333 34433 56777888888
Q ss_pred hcCCCceEEEEe
Q psy12591 99 LTKPRARGLFKR 110 (144)
Q Consensus 99 k~~~~arvii~~ 110 (144)
+ ..+.+++++-
T Consensus 102 ~-~~gv~l~~~~ 112 (169)
T 3g13_A 102 K-ERNIAVYFED 112 (169)
T ss_dssp H-TTTCEEEETT
T ss_pred H-HcCCEEEEec
Confidence 8 6788877653
No 297
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=25.85 E-value=1.6e+02 Score=20.20 Aligned_cols=77 Identities=9% Similarity=-0.002 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhh--CceEEEEEecccCCCCCcchhhHHHHH-HHHhcCCCceEEE
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAK--YSICIAIKEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLF 108 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~--~Gi~V~~~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii 108 (144)
.++.-..++.. + |..-.|.-|....+.+.+.|++ +|..|.-.-.....+. +=.++...+ +.+.+..-.|.|+
T Consensus 13 ~~~~~~~~M~M-k--IaIgsDhaG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~--DYPd~a~~vA~~V~~g~~d~GIl 87 (179)
T 3k7p_A 13 GLVPRGSHMTR-R--VAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESV--DYPDFASRVAEMVARKEVEFGVL 87 (179)
T ss_dssp --------CCE-E--EEEEECTGGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCC--CHHHHHHHHHHHHHTTSSSEEEE
T ss_pred CcccccccCce-E--EEEEECchHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCC--CHHHHHHHHHHHHHcCCCCEEEE
Confidence 33333445552 3 4444566788999999999999 9998865544433221 112343333 4454334457888
Q ss_pred EeeEE
Q psy12591 109 KRLKL 113 (144)
Q Consensus 109 ~~~~~ 113 (144)
+|.+.
T Consensus 88 iCGTG 92 (179)
T 3k7p_A 88 AAGSG 92 (179)
T ss_dssp EESSS
T ss_pred EccCc
Confidence 88764
No 298
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=25.83 E-value=85 Score=24.18 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=39.3
Q ss_pred EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEE
Q psy12591 20 TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 20 fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~ 74 (144)
-+..|+....++.+.++++..+-+.|-|.++.+. ..+.|++.|+..++.++
T Consensus 258 emClPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv 308 (362)
T 3zy2_A 258 EICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAH 308 (362)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEE
Confidence 3467888888888888888889999988886554 35778888877777664
No 299
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=25.68 E-value=2e+02 Score=24.76 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=38.3
Q ss_pred cEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591 43 SYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK 112 (144)
Q Consensus 43 ~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~ 112 (144)
-.|+++..... +...+...+.++|+-+.....+-..+- .+.++.+.|+-+.+.++.++|+++..
T Consensus 655 G~VgiVSqSGa----l~~~i~~~~~~~g~G~S~~VsiGnd~~--~d~~~~D~L~~l~~Dp~T~~Ivly~E 718 (829)
T 3pff_A 655 GSVAYVSRSGG----MSNELNNIISRTTDGVYEGVAIGGDRY--PGSTFMDHVLRYQDTPGVKMIVVLGE 718 (829)
T ss_dssp CSEEEEESCHH----HHHHHHHHHHHHSSCEEEEEECCSSSS--CSSCHHHHHHHHHTCTTCCEEEEEEE
T ss_pred CcEEEEechhH----HHHHHHHHHHHcCCCeEEEEecCCCCC--CCCCHHHHHHHHhhCCCCCEEEEEEe
Confidence 35666654332 234455556666666655544433310 14577888888877788888888876
No 300
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=25.19 E-value=1e+02 Score=23.18 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCC
Q psy12591 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKD 82 (144)
Q Consensus 32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~ 82 (144)
..+.+|+++ .+.|.+.+++|.-|+..+....+.+.+.|+.+.. ..+|.+
T Consensus 186 ~~~~~L~r~-~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v-~~lP~g 234 (329)
T 4edg_A 186 EHITFIRKL-TSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFV-IQLPSG 234 (329)
T ss_dssp HHHHHHHHH-CSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEE-CCCCTT
T ss_pred HHHHHHHhc-CCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEE-EECCCC
Confidence 345566554 4678788888888998888888888888876543 345544
No 301
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=25.09 E-value=56 Score=22.27 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=21.7
Q ss_pred EEEEEEEeCCcchHHHHHHHHHhhhCceEEEE
Q psy12591 44 YVSIIYEESNYGVKAFEELEVLLAKYSICIAI 75 (144)
Q Consensus 44 ~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~ 75 (144)
+|+|| |||.+....+..++++.|..+..
T Consensus 4 ~I~ii----D~g~~n~~si~~al~~~G~~~~v 31 (211)
T 4gud_A 4 NVVII----DTGCANISSVKFAIERLGYAVTI 31 (211)
T ss_dssp CEEEE----CCCCTTHHHHHHHHHHTTCCEEE
T ss_pred EEEEE----ECCCChHHHHHHHHHHCCCEEEE
Confidence 57777 78877778888888888877654
No 302
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=24.50 E-value=1.4e+02 Score=23.27 Aligned_cols=46 Identities=9% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCc---------------EEEEEEE-eCCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 31 KAMVEIVKKLGWS---------------YVSIIYE-ESNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 31 ~a~~~ll~~f~W~---------------~Vaii~~-~~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
+..-+||+.-||+ .+.+++. ++......++.++..|++.||.+...
T Consensus 313 ~kAk~LL~eaG~~~~~~dg~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~ 374 (502)
T 2noo_A 313 QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLI 374 (502)
T ss_dssp HHHHHHHHHTTCBCCTTCSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHcCCCcCCCCceEccCCeEEEEEEEeCCCChhHHHHHHHHHHHHHhcCcEEEEE
Confidence 3445678888884 3455553 33334678899999999999998654
No 303
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=24.34 E-value=82 Score=20.56 Aligned_cols=31 Identities=6% Similarity=-0.164 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHhcCCCceEEEEeeEEeeeCCc
Q psy12591 88 ETAYDDIVLKLLTKPRARGLFKRLKLVKDSGV 119 (144)
Q Consensus 88 ~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~ 119 (144)
..+++.++++++ .++++++++....+...++
T Consensus 100 ~~~~~~~i~~~~-~~~~~vil~~~~p~~~~~~ 130 (204)
T 3p94_A 100 FGNLVSMAELAK-ANHIKVIFCSVLPAYDFPW 130 (204)
T ss_dssp HHHHHHHHHHHH-HTTCEEEEECCCCCSCBTT
T ss_pred HHHHHHHHHHHH-hCCCeEEEEeCCCCCCCCC
Confidence 345677788888 4788887775443333333
No 304
>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A
Probab=24.07 E-value=2.4e+02 Score=21.49 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCcEEEEEEEeCCcchHH-HH--HHHHHhhhCceEEEEEe-cccCCCCCcchhhHHHHHHHHh
Q psy12591 31 KAMVEIVKKLGWSYVSIIYEESNYGVKA-FE--ELEVLLAKYSICIAIKE-KLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~-~~--~~~~~l~~~Gi~V~~~~-~~~~~~~~~~~~~~~~~l~~lk 99 (144)
..+.+.++.-+|++|-++.+|. |.+. .+ -|.+.|.+.|..|.+.. ..|-- .+.+..|+...|.++.
T Consensus 201 ~~l~~~L~~~~~k~Vl~v~DNA--G~Eiv~D~L~La~~Ll~~g~kVvl~vK~~P~v-nDvT~~D~~~~L~~l~ 270 (367)
T 1xfi_A 201 ENFQAKWINKSWKKAVIFVDNS--GADIILGILPFARELLRRGAQVVLAANELPSI-NDITCTELTEILSQLK 270 (367)
T ss_dssp HHHHHHHTTTCCCEEEEECCBT--THHHHHTHHHHHHHHHHTTCEEEEEEBSSCCT-TBCBHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCEEEEEecCC--CchhhccHHHHHHHHHHcCCEEEEEECCcCce-eeCCHHHHHHHHHHHH
Confidence 4555566655688888888765 5332 33 36777888887776543 23321 2235788888888874
No 305
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=23.95 E-value=1.6e+02 Score=21.92 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=28.9
Q ss_pred HhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591 65 LLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK 109 (144)
Q Consensus 65 ~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~ 109 (144)
.++..|+.+.......++.. +...++..+++.+| ..+.++|+.
T Consensus 217 fa~~yGL~~~~~~~~~~~~e-ps~~~l~~l~~~ik-~~~v~~If~ 259 (321)
T 1xvl_A 217 LARDYGMEEIYMWPINAEQQ-FTPKQVQTVIEEVK-TNNVPTIFC 259 (321)
T ss_dssp HHHHTTCEEEEEESSSSSCS-CCHHHHHHHHHHHH-TTTCSEEEE
T ss_pred HHHHCCCeEEEeeccCCCCC-CCHHHHHHHHHHHH-HcCCcEEEE
Confidence 33445777666555533321 45788999999999 678888865
No 306
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=23.89 E-value=1.5e+02 Score=22.32 Aligned_cols=42 Identities=10% Similarity=0.009 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHH---hhhCceEE
Q psy12591 31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVL---LAKYSICI 73 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~---l~~~Gi~V 73 (144)
...+++|.++. +.|.+.+++|.-|...+....+. +.+.|..+
T Consensus 196 ~~~~~~L~r~~-~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v 240 (338)
T 1dd9_A 196 ADHIQLLFRAT-NNVICCYDGDRAGRDAAWRALETALPYMTDGRQL 240 (338)
T ss_dssp HHHHHHHHHHC-SEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEE
T ss_pred HHHHHHHHhcC-CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 34455555443 67888889999998888877776 55567655
No 307
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=23.59 E-value=1.7e+02 Score=19.47 Aligned_cols=62 Identities=15% Similarity=-0.037 Sum_probs=38.1
Q ss_pred EEeCCcchHHHHHHHHHhhhCceEEEEEecccCC-CCCcchhhHHHHHHHHhcCCCceEEEEeeEE
Q psy12591 49 YEESNYGVKAFEELEVLLAKYSICIAIKEKLVKD-SGVAEETAYDDIVLKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 49 ~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~-~~~~~~~~~~~~l~~lk~~~~arvii~~~~~ 113 (144)
.-.|.-|....+.+.+.|+++|..|.-.-..... +.. =.++...+.+.-. .-.|.|++|.+.
T Consensus 12 igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~d--Ypd~a~~va~~V~-~~d~GIliCGTG 74 (148)
T 4em8_A 12 LSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVD--YPDYVHDVVREVS-DTSFGVLICGTG 74 (148)
T ss_dssp EEECGGGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCC--GGGGTHHHHTTCB-TTBEEEEEESSS
T ss_pred EEECchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCC--hHHHHHHHHHHHH-HhCeEEEEccCc
Confidence 3446678899999999999999988654443322 111 1234344433332 446788888764
No 308
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=23.34 E-value=2e+02 Score=20.31 Aligned_cols=81 Identities=9% Similarity=-0.067 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcC-C
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK-P 102 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~-~ 102 (144)
......+.+++..+..-||+ |.++..+. ...+.+.+.+++.|..+.... .... +..++.+.++++++. .
T Consensus 39 Gas~GIG~aia~~la~~G~~-V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~-~Dl~----d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 39 GASTGIGKKVALAYAEAGAQ-VAVAARHS----DALQVVADEIAGVGGKALPIR-CDVT----QPDQVRGMLDQMTGELG 108 (276)
T ss_dssp STTSHHHHHHHHHHHHTTCE-EEEEESSG----GGGHHHHHHHHHTTCCCEEEE-CCTT----CHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCE-EEEEeCCH----HHHHHHHHHHHhcCCeEEEEE-cCCC----CHHHHHHHHHHHHHHcC
Confidence 44567888888877777885 44444332 233445555665554433221 1111 356777778777631 3
Q ss_pred CceEEEEeeEEe
Q psy12591 103 RARGLFKRLKLV 114 (144)
Q Consensus 103 ~arvii~~~~~~ 114 (144)
+.+++|.++...
T Consensus 109 ~iD~lvnnAg~~ 120 (276)
T 3r1i_A 109 GIDIAVCNAGIV 120 (276)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 577888776543
No 309
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=22.96 E-value=2.3e+02 Score=20.94 Aligned_cols=85 Identities=13% Similarity=-0.043 Sum_probs=49.2
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchH---HHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhc
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVK---AFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLT 100 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~---~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~ 100 (144)
......+.+++..+..-|++ |.++..+.+-... ..+...+.+++.|..+.... .... +..++.+.++++.+
T Consensus 52 Gas~GIG~aia~~La~~Ga~-Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~-~Dv~----d~~~v~~~~~~~~~ 125 (346)
T 3kvo_A 52 GASRGIGKAIALKAAKDGAN-IVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCI-VDVR----DEQQISAAVEKAIK 125 (346)
T ss_dssp TTTSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEE-CCTT----CHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCE-EEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEE-ccCC----CHHHHHHHHHHHHH
Confidence 44567888888877777884 5555544332221 23445556666665544322 2111 36677888877763
Q ss_pred C-CCceEEEEeeEEe
Q psy12591 101 K-PRARGLFKRLKLV 114 (144)
Q Consensus 101 ~-~~arvii~~~~~~ 114 (144)
. .+.+++|-++...
T Consensus 126 ~~g~iDilVnnAG~~ 140 (346)
T 3kvo_A 126 KFGGIDILVNNASAI 140 (346)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 2 3677887776543
No 310
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=22.89 E-value=1.3e+02 Score=23.42 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCc-----EEEEEEEeCCcchHHHHHHHHHhhh-CceEEEEE
Q psy12591 32 AMVEIVKKLGWS-----YVSIIYEESNYGVKAFEELEVLLAK-YSICIAIK 76 (144)
Q Consensus 32 a~~~ll~~f~W~-----~Vaii~~~~~~g~~~~~~~~~~l~~-~Gi~V~~~ 76 (144)
..-+||+.-||+ .+-+++.++......++.++..|++ .||.|...
T Consensus 343 kAk~LL~eAG~~~G~~~~l~l~~~~~~~~~~~a~~iq~~l~~~iGI~v~i~ 393 (517)
T 1jet_A 343 EAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLE 393 (517)
T ss_dssp HHHHHHHHTTCCSSSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHhCCCCCCCCeEEEEEecCCchHHHHHHHHHHHHHHhcCCEEEEE
Confidence 445688888884 4666665544456788999999997 89988654
No 311
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=22.41 E-value=2.4e+02 Score=20.90 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCcEEEE--EEEeCCc--c--hHHHHHHHHHhhhCceEEE
Q psy12591 31 KAMVEIVKKLGWSYVSI--IYEESNY--G--VKAFEELEVLLAKYSICIA 74 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vai--i~~~~~~--g--~~~~~~~~~~l~~~Gi~V~ 74 (144)
+..++.|+.+|++-+.- +.....| | ..-+++|.+++....+...
T Consensus 35 ~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI 84 (311)
T 1zl0_A 35 EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAV 84 (311)
T ss_dssp HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEE
Confidence 44456667777654421 1111111 1 2356677777777766443
No 312
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=22.39 E-value=2.8e+02 Score=21.57 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 29 QVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 29 ~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
.+.+++.+++.-+-..|.|=++....+..+.+.+..-+...|+.|...
T Consensus 35 i~~a~~~~l~~~~~~~VvVG~D~R~ss~~l~~a~~~gl~a~G~~V~~~ 82 (463)
T 1p5d_X 35 IGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDV 82 (463)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 456677777654445666666666677888999999999999998754
No 313
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=22.37 E-value=2.2e+02 Score=22.40 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCc---EEEEEEEeCCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 32 AMVEIVKKLGWS---YVSIIYEESNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 32 a~~~ll~~f~W~---~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
..-+||+.-||. .+-+++.++... ..++.++..|++.||.|...
T Consensus 377 kAk~LL~eAG~~~g~~l~l~~~~~~~~-~~a~~iq~~l~~iGI~v~i~ 423 (562)
T 2wol_A 377 AARAELAAAGLPDGFRAVIGTQRGKFR-LVADAVVESLARVGIELTVK 423 (562)
T ss_dssp HHHHHHHHTTCTTCEEEEEEEESSHHH-HHHHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHHhCCCCCeEEEEEecCChHH-HHHHHHHHHHHHcCceeEEE
Confidence 345677888884 466666543333 78899999999999998754
No 314
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=22.27 E-value=2.3e+02 Score=21.74 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=40.7
Q ss_pred HhCCCcEE------EEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591 38 KKLGWSYV------SIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK 109 (144)
Q Consensus 38 ~~f~W~~V------aii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~ 109 (144)
+.+++++| ++|.. |.+..-...+.+...|..+.-...+..++ +.+.+...++.+-+.++.++|++
T Consensus 237 ~~~~l~yv~l~g~I~ii~N----g~Gl~~~t~D~i~~~G~~~aN~lD~gG~a---~~e~~~~al~~~l~d~~v~~ilv 307 (397)
T 3ufx_B 237 SNYGFAYVKLDGNIGIIGN----GAGLVMYTLDLVNRVGGKPANFLDIGGGA---KADVVYNALKVVLKDPDVKGVFI 307 (397)
T ss_dssp HHTTCEEEECSSSEEEEES----SHHHHHHHHHHHHHTTCCBSEEEECCSCC---CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHcCCCcccCCCcEEEEec----CccHHHHHHHHHHHcCCCcCCcEecCCCC---CHHHHHHHHHHHHcCCCCCEEEE
Confidence 45666664 55543 33444445667777787665444444443 46788888888776677887776
No 315
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=22.20 E-value=1.3e+02 Score=21.90 Aligned_cols=44 Identities=7% Similarity=0.085 Sum_probs=28.5
Q ss_pred HhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591 65 LLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR 110 (144)
Q Consensus 65 ~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~ 110 (144)
.++..|+.+.....+.++.. +...++..+++.+| ..+.++|+.-
T Consensus 192 f~~~yGl~~~~~~~~~~~~e-ps~~~l~~l~~~ik-~~~v~~if~e 235 (286)
T 3gi1_A 192 LAKRFGLKQLGISGISPEQE-PSPRQLKEIQDFVK-EYNVKTIFAE 235 (286)
T ss_dssp HHHHTTCEEEEEECSCC----CCHHHHHHHHHHHH-HTTCCEEEEC
T ss_pred HHHHCCCeEeeccccCCCCC-CCHHHHHHHHHHHH-HcCCCEEEEe
Confidence 34455777766555533321 34788999999999 6778887653
No 316
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=21.92 E-value=2.1e+02 Score=20.01 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEE
Q psy12591 30 VKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL 107 (144)
Q Consensus 30 ~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvi 107 (144)
...+.++|+..|.+.+.+.....++|.... ...+...|..|.....--... +...-...|..|+ ..+++++
T Consensus 145 ~t~L~~~L~~~gi~~lvv~G~~T~~CV~~T---a~dA~~~Gy~V~Vv~Da~as~---~~~~h~~aL~~m~-~~g~~v~ 215 (227)
T 3r2j_A 145 STGLAGLLHSIGARRVFVCGVAYDFCVFFT---AMDARKNGFSVVLLEDLTAAV---DDAAWSARTAELK-DAGVVLL 215 (227)
T ss_dssp BCSHHHHHHHHTCCEEEEEESCTTTHHHHH---HHHHHHTTCEEEEEEEEECCS---CGGGHHHHHHHHH-TTTCEEE
T ss_pred CCcHHHHHHHcCCCEEEEEEeccchHHHHH---HHHHHHCCCEEEEEhHhhCCC---CHHHHHHHHHHHH-HcCCEEE
Confidence 456778888889999999999999985432 222334677765543332222 2456677888898 5566553
No 317
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=21.91 E-value=2e+02 Score=19.83 Aligned_cols=67 Identities=13% Similarity=-0.025 Sum_probs=40.4
Q ss_pred EEEEEEeCCcchHHHHHHHHHhhhCc--eEEEEEecc-cCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEE
Q psy12591 45 VSIIYEESNYGVKAFEELEVLLAKYS--ICIAIKEKL-VKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKL 113 (144)
Q Consensus 45 Vaii~~~~~~g~~~~~~~~~~l~~~G--i~V~~~~~~-~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~ 113 (144)
.-|..-.|.-|..+.+.+.+.|+++| ..|.-.-.. ...+. +=.++...+ +.+.+..-.|.|++|.+.
T Consensus 30 MkIaIgsDHaG~~LK~~i~~~L~~~G~g~eV~D~G~~s~~e~~--DYPd~a~~vA~~V~~ge~d~GIliCGTG 100 (184)
T 3sgw_A 30 LRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKT--AYPHVAIQAAQLIKDGKVDRALMICGTG 100 (184)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHTTCTTEEEEEECSCCSTTCCC--CHHHHHHHHHHHHHTTSCSEEEEEESSS
T ss_pred cEEEEEECchhHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCCC--CHHHHHHHHHHHHHcCCCcEEEEEcCCc
Confidence 34555567778899999999999998 677544333 12211 112343333 445433445788888764
No 318
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=21.86 E-value=1.5e+02 Score=22.14 Aligned_cols=76 Identities=8% Similarity=0.085 Sum_probs=39.3
Q ss_pred CCchHHHHHHHHHHHhCCCcEEEEEEE-eCCcchH---HHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591 24 PSDHHQVKAMVEIVKKLGWSYVSIIYE-ESNYGVK---AFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99 (144)
Q Consensus 24 p~d~~~~~a~~~ll~~f~W~~Vaii~~-~~~~g~~---~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk 99 (144)
.++..-...+-.|+. -++.-+++++. |...|++ ....+.+.+.+.|+.+.....+ ++. +.+..|+
T Consensus 14 Gt~~fa~~~L~~L~~-~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~-------~~~---~~~~~l~ 82 (318)
T 3q0i_A 14 GTPDFAARHLAALLS-SEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENF-------KSD---ESKQQLA 82 (318)
T ss_dssp CCSHHHHHHHHHHHT-SSSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCS-------CSH---HHHHHHH
T ss_pred ecCHHHHHHHHHHHH-CCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcC-------CCH---HHHHHHH
Confidence 344433444444554 46766677764 3334433 1235677888899987422111 122 3555666
Q ss_pred cCCCceEEEEee
Q psy12591 100 TKPRARGLFKRL 111 (144)
Q Consensus 100 ~~~~arvii~~~ 111 (144)
..+++++|+..
T Consensus 83 -~~~~Dliv~~~ 93 (318)
T 3q0i_A 83 -ALNADLMVVVA 93 (318)
T ss_dssp -TTCCSEEEESS
T ss_pred -hcCCCEEEEeC
Confidence 56688887653
No 319
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=21.65 E-value=79 Score=21.55 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCcEEEEEEEeCCcc--hHHHHHHHHHhhhCceEE
Q psy12591 31 KAMVEIVKKLGWSYVSIIYEESNYG--VKAFEELEVLLAKYSICI 73 (144)
Q Consensus 31 ~a~~~ll~~f~W~~Vaii~~~~~~g--~~~~~~~~~~l~~~Gi~V 73 (144)
+..-+......-+++.|+|. +.+| +.+++.+.+.+.+.|+.+
T Consensus 10 ~~~~~~~~~~~~~kv~IvY~-S~tGnTe~~A~~ia~~l~~~g~~v 53 (191)
T 1bvy_F 10 KKVRKKAENAHNTPLLVLYG-SNMGTAEGTARDLADIAMSKGFAP 53 (191)
T ss_dssp -----------CCCEEEEEE-CSSSHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHhhcccccCCCeEEEEEE-CCChHHHHHHHHHHHHHHhCCCce
Confidence 33333433334456777764 3344 457777777777666543
No 320
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=21.31 E-value=2.7e+02 Score=21.03 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=50.7
Q ss_pred EEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh--------c--CCCceEEEEeeEE
Q psy12591 44 YVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL--------T--KPRARGLFKRLKL 113 (144)
Q Consensus 44 ~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk--------~--~~~arvii~~~~~ 113 (144)
++.++++|+.-|+-.++.+++.+.+.|+.+... .+..-. ...+|..-|.+|- . ..+-+++|--.
T Consensus 94 ~v~Ll~SDT~~G~l~AeiLke~l~~~G~~v~~~-~V~gL~---~~~~F~~GL~nLv~~v~~~i~~~~~~g~~v~~N~T-- 167 (324)
T 3qyf_A 94 YVFLYSTNTSNSQLAGEVIRDYLIEEGIRSELV-TVKTIS---SEENFYEGIVDLFDKVIYRILKFKEQDNEVYINAT-- 167 (324)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEE-EECCCC---SHHHHHHHHHHHHHHTHHHHHHHHHTTCEEEEECS--
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHcCCeeEEE-EcCCCC---chHHHHHHHHHHHHHHHHHHHhhccCCceEEEEcC--
Confidence 577889999999999999999999999764332 222111 0233333222221 1 12334444333
Q ss_pred eeeCCcchhhhhHHHHHHHhcCc
Q psy12591 114 VKDSGVAEETAYDDIVLKLLTKP 136 (144)
Q Consensus 114 ~~~~g~~~~~~~~~~~~~~~~~~ 136 (144)
-|+..+..|-.+.|++.--|
T Consensus 168 ---GGfKaei~yl~l~g~l~Ga~ 187 (324)
T 3qyf_A 168 ---PGLKPESIFLTLAGLLAGAD 187 (324)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCC
T ss_pred ---CCcchHHHHHHHHHHHcCCC
Confidence 48888888888888776334
No 321
>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}
Probab=21.24 E-value=1.5e+02 Score=23.06 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=41.3
Q ss_pred eEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchH-HHHHHHHHhhhCceEEEEEecccC
Q psy12591 19 FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVK-AFEELEVLLAKYSICIAIKEKLVK 81 (144)
Q Consensus 19 ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~-~~~~~~~~l~~~Gi~V~~~~~~~~ 81 (144)
|...+|+...-.+++.++.+. +.+-++.+|...|.. +...+...|..+|+.+....+++-
T Consensus 191 fvN~~P~~ia~~P~~~ela~~---~gvpi~GdD~ktG~T~~k~~L~~~l~~rgl~v~~~~q~N~ 251 (394)
T 3cin_A 191 FVNVIPTFIANDPAFVELAKE---NNLVVFGDDGATGATPFTADVLSHLAQRNRYVKDVAQFNI 251 (394)
T ss_dssp EEECSSSCSTTCHHHHHHHHH---TTEEEECSSBSCSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred eecCCCccccCcHHHHHHHHH---cCCcEecccccccchhHHHHHHHHHHHCCCeEeEEEEEee
Confidence 445566555444566666655 567777777677776 778888889999999887665543
No 322
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=20.52 E-value=1.7e+02 Score=18.52 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=40.0
Q ss_pred eEEecCCchH-HHHHHHH-HHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHH
Q psy12591 19 FTRTIPSDHH-QVKAMVE-IVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVL 96 (144)
Q Consensus 19 ffRt~p~d~~-~~~a~~~-ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~ 96 (144)
++=+.+.|.| .+..++. +++..||+-+-+=.. -..+.+.+.+.+.+..+......... ....+...++
T Consensus 7 vla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~------~p~e~~v~~a~~~~~d~v~lS~~~~~----~~~~~~~~i~ 76 (137)
T 1ccw_A 7 VLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL------SPQELFIKAAIETKADAILVSSLYGQ----GEIDCKGLRQ 76 (137)
T ss_dssp EEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE------ECHHHHHHHHHHHTCSEEEEEECSST----HHHHHTTHHH
T ss_pred EEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEecCcC----cHHHHHHHHH
Confidence 4445566644 4455554 678899976644321 13456666666655444333222211 2556777888
Q ss_pred HHhc
Q psy12591 97 KLLT 100 (144)
Q Consensus 97 ~lk~ 100 (144)
.|++
T Consensus 77 ~l~~ 80 (137)
T 1ccw_A 77 KCDE 80 (137)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
No 323
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.24 E-value=1.2e+02 Score=22.31 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=27.8
Q ss_pred HhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591 65 LLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK 109 (144)
Q Consensus 65 ~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~ 109 (144)
.++..|+.+.......++.. +...++..+++.+| ..+.++|+.
T Consensus 203 fa~~yGl~~~~~~~~~~~~e-ps~~~l~~l~~~ik-~~~v~~If~ 245 (312)
T 2o1e_A 203 LAKEYGLKQVPIAGLSPDQE-PSAASLAKLKTYAK-EHNVKVIYF 245 (312)
T ss_dssp HHHHTTCEEEECSSCCSSSC-CCHHHHHHHHHHTT-SSCCCEEEC
T ss_pred HHHHCCCeEEEeeccCCCCC-CCHHHHHHHHHHHH-HcCCCEEEE
Confidence 34455777665544433321 35788999999998 677887764
No 324
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=20.10 E-value=62 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=28.9
Q ss_pred cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEE
Q psy12591 43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIK 76 (144)
Q Consensus 43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~ 76 (144)
..|+||.+. +.||...+..|...+.+.|++|+.-
T Consensus 128 ~~vAIVGsR~~s~yG~~~a~~l~~~La~~g~~VVSG 163 (382)
T 3maj_A 128 PMIAIVGSRNASGAGLKFAGQLAADLGAAGFVVISG 163 (382)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHHHHHTCEEEEC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCcEEEeC
Confidence 579999864 5799999999999999999988644
Done!