RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12591
(144 letters)
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 125 bits (315), Expect = 1e-34
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S+ STS +LS+K R++YF RT+P D +Q KAM EI++ W+YVS + E +YG E
Sbjct: 145 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 204
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
E +ICIA EK+ + + +YD ++ +LL KP AR
Sbjct: 205 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 246
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 121 bits (304), Expect = 2e-33
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S+ STS +LS+K R++YF RT+P D +Q KAM EI++ W+YVS + E +YG E
Sbjct: 144 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 203
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
E +I IA EK+ + + +YD ++ +LL KP AR
Sbjct: 204 AFEQEARLRNISIATAEKVGRSNI---RKSYDSVIRELLQKPNAR 245
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 116 bits (291), Expect = 1e-31
Identities = 38/106 (35%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+++ +TS +LS+K ++YF R +PSD Q +AM++IVK+ W+YVS ++ E NYG +
Sbjct: 156 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 215
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL-TKPRAR 105
+ L A+ + IA +K+ ++G E ++D ++ KL P+AR
Sbjct: 216 AFKELAAQEGLSIAHSDKIYSNAG---EKSFDRLLRKLRERLPKAR 258
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 113 bits (284), Expect = 1e-30
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S+ ST+PELS+ +R+++F+R +P D Q +AMV+IVK LGW+YVS + E +YG K E
Sbjct: 145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVE 204
Query: 61 ELEVLLAKYS-ICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
+ + + IA ++ ++ +D I+ +LL P +R
Sbjct: 205 SFTQISKEAGGLSIAQSVRIPQERK-DRTIDFDRIIKQLLDTPNSR 249
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 107 bits (269), Expect = 1e-28
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+SF +T+P L++K+++ YF RT+PSD+ A+++++K W V + ++ +
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD---IVLKLLTKPRARGLF 108
+L +L I I+ E D + + + I+L + A +F
Sbjct: 173 DLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVF 223
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 98.3 bits (244), Expect = 2e-25
Identities = 24/119 (20%), Positives = 43/119 (36%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+ + S+K F RT+P HQ E+++ W++V +I + + G A +
Sbjct: 98 IGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQK 157
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGV 119
+LE LL + D + L +P + L L K+
Sbjct: 158 KLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEA 216
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 88.3 bits (218), Expect = 7e-22
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 1 VSF-WSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAF 59
+ +S +++K F + PS Q M+ I+++ W SI+
Sbjct: 94 LGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFV 153
Query: 60 EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
++ + + ++E L+ D + + D + L K ++
Sbjct: 154 NKIRSTIENSFVGWELEEVLLLDMSLDD---GDSKIQNQLKKLQSP 196
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 82.5 bits (203), Expect = 2e-19
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 1 VSFWSTSPELSNKQ-RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAF 59
+S + + +K + + TR P+ + M+ + + WS +++Y + +
Sbjct: 112 LSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCY 171
Query: 60 EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLF 108
LE + + D ++ +DIV + R +
Sbjct: 172 FTLEGVHEVFQEEGLHTSIYSFDE--TKDLDLEDIVRNIQASERVVIMC 218
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 82.1 bits (202), Expect = 2e-19
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
++ + + + K + TRT PS + + ++LGW + +++ G
Sbjct: 105 LTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPC 164
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR 103
V + + + V D KLL R
Sbjct: 165 FFIVEGLYMRVRERLNITVNHQEFV---EGDPDHYPKLLRAVR 204
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 78.6 bits (193), Expect = 3e-18
Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+ NK ++ P +A++++V+ W V+++Y + + G+ +
Sbjct: 99 IQTRWKHQVSDNKDS--FYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQ 155
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
EL ++Y++ + I++ + +T +LK + + +
Sbjct: 156 ELIKAPSRYNLRLKIRQ-------LPADTKDAKPLLKEMKRGKEF 193
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 57.1 bits (137), Expect = 1e-10
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+ RF PS+ A+ I+K + S+I + E
Sbjct: 99 IKVGPEETPRLQYLRF-ASVSLYPSNEDVSLAVSRILKSFNYPSASLIC-AKAECLLRLE 156
Query: 61 ELEVLLAKYSICIAIK 76
EL ++++
Sbjct: 157 ELVRGFLISKETLSVR 172
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 52.5 bits (125), Expect = 4e-09
Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 7 SPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
+P + + P A++ +++ W + +Y +S+ G+ + +
Sbjct: 89 TPSFPTDGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144
Query: 67 AKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
A+ + + + ++ Y + L K R
Sbjct: 145 AEKKWQVTAI-NVGNINNDKKDETYRSLFQDLELKKERR 182
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 49.8 bits (118), Expect = 5e-08
Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
V F + S + +F R +A++ I+ W IY +++ G+ +
Sbjct: 92 VCFITPSFPVDTSNQFVLQLRP-----ELQEALISIIDHYKWQTFVYIY-DADRGLSVLQ 145
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
+ A+ + + L ++ + L K + R
Sbjct: 146 RVLDTAAEKNWQVTAVNILTTTEEGYR------MLFQDLEKKKER 184
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 48.3 bits (114), Expect = 1e-07
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
SF + S +F R A++ ++ W +Y ++ G +
Sbjct: 94 TSFVTPSFPTDADVQFVIQMRP-----ALKGAILSLLSYYKWEKFVYLY-DTERGFSVLQ 147
Query: 61 ELEVLLAKYSICIAIKE 77
+ + + + +
Sbjct: 148 AIMEAAVQNNWQVTARS 164
>3sg0_A Extracellular ligand-binding receptor; structural genomics,
PSI-biology; HET: 173; 1.20A {Rhodopseudomonas
palustris} PDB: 4dqd_A*
Length = 386
Score = 47.8 bits (114), Expect = 2e-07
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 1 VSFWSTSPEL-SNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAF 59
++ + + + +R ++ + +P+D +A+ + + K G V I YG +
Sbjct: 117 MTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176
Query: 60 EELEVLLAKYSICIAIKEK 78
+ L K + E
Sbjct: 177 KVLAAAAPKLGFELTTHEV 195
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 46.3 bits (110), Expect = 7e-07
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 5 STSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGVKAFEELE 63
S EL + +Y S QV A++E I ++ + V+++ S +G E+
Sbjct: 105 SMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDAR 164
Query: 64 VLLAKYSICIAIKE 77
+ + I +
Sbjct: 165 KAARELGLQIVDVQ 178
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap
domain, transport protein; 1.30A {Agrobacterium
tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Length = 356
Score = 45.7 bits (109), Expect = 1e-06
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGV--- 56
++ +T+P + ++ RT D Q + + + V+II++++ YG
Sbjct: 97 ITPAATNPVFT-ERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLA 155
Query: 57 KAFEE 61
++
Sbjct: 156 DETKK 160
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY
crystallography, protein structure, ABC transport
systems, transport protein; 1.53A {Escherichia coli}
SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A
1z17_A 1z18_A 2liv_A
Length = 346
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/65 (21%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGV--- 56
+S +T+PEL+ ++ +++ RT D Q + I++ + ++II+++ YG
Sbjct: 97 ISPGATNPELT-QRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLA 155
Query: 57 KAFEE 61
++ ++
Sbjct: 156 RSVQD 160
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular
ligand-binding receptor,transport protein; 1.93A
{Rhodospirillum rubrum atcc 11170}
Length = 358
Score = 44.2 bits (105), Expect = 4e-06
Identities = 9/78 (11%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
+S + P+ + + R I + + + G++ V++I +++G+ + +
Sbjct: 100 LSPTAAHPDYI--KISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQ 157
Query: 61 ELEVLLAKYSICIAIKEK 78
+ + E+
Sbjct: 158 AFRKAFELRGGAVVVNEE 175
>3lop_A Substrate binding periplasmic protein; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.55A
{Ralstonia solanacearum}
Length = 364
Score = 43.9 bits (104), Expect = 4e-06
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
V + + ++ S ++ M+ + +G + + ++Y+E G +A
Sbjct: 103 VGPATGASSMTTD---PLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159
Query: 61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98
+E L +++ I ++ V KL
Sbjct: 160 GVERTLKAHALAITAMASYPRN-----TANVGPAVDKL 192
>3snr_A Extracellular ligand-binding receptor; structural genomics,
APC102214, PSI-biology, midwest center structural
genomics, MCSG; HET: MSE TYR PHE; 1.49A
{Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A*
3ukj_A* 3tx6_A*
Length = 362
Score = 43.9 bits (104), Expect = 4e-06
Identities = 14/74 (18%), Positives = 27/74 (36%)
Query: 5 STSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEV 64
+ +P +R ++ K + E +KK V I +YG F +L+
Sbjct: 98 ALAPLPITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKK 157
Query: 65 LLAKYSICIAIKEK 78
+ I +E+
Sbjct: 158 QGEAMGLKIVGEER 171
>4evq_A Putative ABC transporter subunit, substrate-bindi component;
structural genomics, PSI-biology, midwest center for
structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas
palustris} PDB: 4evr_A
Length = 375
Score = 41.2 bits (97), Expect = 4e-05
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYG---VK 57
+ + + ++ RT ++ +A + + K G + + G V
Sbjct: 110 IVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169
Query: 58 AFEE 61
F++
Sbjct: 170 GFKK 173
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 41.3 bits (96), Expect = 4e-05
Identities = 11/99 (11%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 7 SPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
+P + + P A++ +++ W + +Y +S+ G+ + +
Sbjct: 89 TPSFPTDGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144
Query: 67 AKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
A+ + + + ++ Y + + L + R
Sbjct: 145 AEKKWQVTAI-NVGNINNDKKDETYRS-LFQDLELKKER 181
>3i45_A Twin-arginine translocation pathway signal protei; structural
genomics; 1.36A {Rhodospirillum rubrum}
Length = 387
Score = 40.1 bits (94), Expect = 9e-05
Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 41/152 (26%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYG---VK 57
++ + L+ ++ Y R PS + Q + KL + + I YG V
Sbjct: 101 MASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVA 160
Query: 58 AFEELEVLLAKYSICIAIKEKLVKDSGVAEETA------YDDIVLKLL-TKP-------- 102
F+E + + + VAE+ V L +P
Sbjct: 161 RFKE------------LLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLF 208
Query: 103 -----------RARGLFKRLKLVKDSGVAEET 123
R RGLF ++V E
Sbjct: 209 GADLPKFVREGRVRGLFAGRQVVSMLTGEPEY 240
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG,
midwest center for structural genomics, transporter;
HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB:
4ey3_A* 3t0n_A* 4eyk_A*
Length = 368
Score = 33.4 bits (77), Expect = 0.017
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYG---VK 57
+ + + ++ + Y RT + + + K G V+ + + G +
Sbjct: 100 IVMAAGTSIITERSP--YIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALA 157
Query: 58 AFEE 61
F+E
Sbjct: 158 FFKE 161
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.029
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 48/125 (38%)
Query: 38 KKLGWSYVSIIYEESNYGV----KAFEELEVLLAKY----------------------SI 71
K++ +Y ++I+E G K F+E+ Y
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 72 CI--AIKEK--LVKDSGVA-----EETA---------YDDIVLKLLTKPRARGLFKRLKL 113
+K K + D+ A E A + +++++ RG+ ++ +
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES-LVEVV---FYRGMTMQVAV 1797
Query: 114 VKDSG 118
+D
Sbjct: 1798 PRDEL 1802
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 31.7 bits (72), Expect = 0.068
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVK-----------KLGWSYVSIIYE 50
+ + E+ K + + T D + +K + ++II
Sbjct: 114 NTVAVHDEMV-KSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITG 172
Query: 51 ESNYGVKAFEELEVLLAKYSICIAIKEK 78
Y V + +Y +++ E
Sbjct: 173 PGIYSVNIANAIRDGAGEYGYDVSLFET 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.28
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 51 ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDS--GVAEETAYDDIVLKLLTKPRARGLF 108
E Y K L V + K+ V+D + + D I++ LF
Sbjct: 13 EHQYQYKDI--LSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 109 KRLKLVKDSGVAE------ETAYDDIVLKLLTKPRARA 140
L ++ V + Y ++ + T+ R +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 26.9 bits (60), Expect = 2.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 95 VLKLLTKPRARGLFKR 110
V LL+ P A GLF+R
Sbjct: 200 VGVLLSLPEASGLFRR 215
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 26.9 bits (60), Expect = 2.8
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 95 VLKLLTKPRARGLFKR 110
+ LL P A+GLF++
Sbjct: 195 IAALLAMPAAKGLFQK 210
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase;
structural genomic center for structural genomics,
JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans
c-125}
Length = 433
Score = 26.7 bits (58), Expect = 3.0
Identities = 6/34 (17%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 16 FEYFTRTIPSDH--HQVKAMVEIVKKLGWSYVSI 47
++ + ++ + + M +KK GW Y+ +
Sbjct: 19 WDCYGASVTEEEVLGNAEYMANHLKKYGWEYIVV 52
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 26.7 bits (59), Expect = 3.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
AM I +++G + VS + E +GVK EEL L+
Sbjct: 603 AMNRIAEEVGNTSVSGLTERIKHGVK--EELLELV 635
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc
29413} SCOP: d.365.1.1
Length = 139
Score = 25.7 bits (56), Expect = 5.0
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 15/52 (28%)
Query: 6 TSPELSNKQR-------------FEYFTRTI--PSDHHQVKAMVEIVKKLGW 42
+P L ++ +Y I + + AM LG+
Sbjct: 27 IAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAMKTYSHALGY 78
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 25.8 bits (57), Expect = 5.9
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 60 EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLF 108
+E+E+L+ + + + K+ D G +Y++ VL+L+ R RG
Sbjct: 68 DEVEILVCINAKDLE-RHKIRADLG----ISYEEDVLRLVDVFRDRGFL 111
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.23.6.1 d.230.4.1
Length = 262
Score = 25.4 bits (55), Expect = 7.7
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 19 FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELE 63
FT + ++ +A +I K+G S++ ++S F +
Sbjct: 38 FTLPLKNNERSAEAAKQIALKMGLEEPSVVMQQSLDEEFTFFVVY 82
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu
initiative, midwest center for structural genomics,
MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Length = 162
Score = 24.8 bits (54), Expect = 8.8
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 27 HHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSI 71
+H M+ + G++ + + + +F L SI
Sbjct: 117 NHTNHRMIRFFESKGFTKIHESLQMNRLDFGSFYLYVKELENQSI 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.371
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,219,407
Number of extensions: 128040
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 39
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)