RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12591
         (144 letters)



>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 477

 Score = 80.0 bits (196), Expect = 5e-19
 Identities = 32/84 (38%), Positives = 56/84 (66%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  ++YF R +PSD  Q +AM++IVK+  W+YVS ++ E NYG    +
Sbjct: 148 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 207

Query: 61  ELEVLLAKYSICIAIKEKLVKDSG 84
             + L A+  +CIA  +K+  ++G
Sbjct: 208 AFKELAAQEGLCIAHSDKIYSNAG 231


>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 401

 Score = 33.2 bits (74), Expect = 0.008
 Identities = 9/61 (14%), Positives = 22/61 (36%)

Query: 18  YFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKE 77
           + TR  P+     + M+ + +   WS  +++Y +       +  LE +   +        
Sbjct: 128 HLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTS 187

Query: 78  K 78
            
Sbjct: 188 I 188


>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 302

 Score = 27.6 bits (60), Expect = 0.54
 Identities = 6/45 (13%), Positives = 18/45 (40%)

Query: 18  YFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEEL 62
            F  T+  + ++  A    + +L +  +++   E + G     + 
Sbjct: 57  VFQGTLYFNQYRGLADRYFMHRLRYRAMALGNHEFDLGPGPLADF 101


>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 337

 Score = 26.1 bits (56), Expect = 1.8
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 19  FTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELE 63
            T    SD    +     +  +G+  ++I   E +  +    + E
Sbjct: 61  NTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQE 105


>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), N-terminal domain {Candida albicans [TaxId:
           5476]}
          Length = 322

 Score = 24.7 bits (53), Expect = 4.9
 Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 19  FTRTIPSDHHQVK--AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY 69
                 SD           I  K  +  ++I   E      + +E E ++  +
Sbjct: 67  HDGNGLSDITSPNGLKSTPIFIKQDYDLLTIGNHELYLWENSKQEYETVVNHF 119


>d1xg7a_ a.96.1.6 (A:) Hypothetical protein PF0904 {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 245

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 27 HHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEEL 62
          HH  + +VEI+K +G      + E+ +    A + L
Sbjct: 1  HHGSRELVEIIKGIGIEGAKEVEEKVDRQFYALQYL 36


>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
          4530]}
          Length = 122

 Score = 23.7 bits (51), Expect = 8.7
 Identities = 5/43 (11%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 12 NKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNY 54
            ++FE  +   P     +   +E + +  W    + + +  +
Sbjct: 8  GIKKFETLSYLPPLTVEDLLKQIEYLLRSKWV-PCLEFSKVGF 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 521,015
Number of extensions: 22830
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 11
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.2 bits)