Query psy12593
Match_columns 122
No_of_seqs 142 out of 783
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 23:16:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 99.6 5.7E-16 1.2E-20 125.5 4.0 62 59-122 14-80 (272)
2 KOG3071|consensus 99.5 2.1E-14 4.5E-19 117.0 6.6 68 52-121 12-79 (274)
3 PF01151 ELO: GNS1/SUR4 family 99.5 3E-14 6.4E-19 113.1 6.0 56 66-122 1-56 (250)
4 KOG3072|consensus 99.1 1E-10 2.2E-15 95.7 4.3 57 60-118 29-85 (282)
5 COG5548 Small integral membran 58.2 6.8 0.00015 28.0 1.6 18 82-100 65-82 (105)
6 PF06210 DUF1003: Protein of u 45.2 93 0.002 22.1 5.8 48 69-119 2-49 (108)
7 PF15048 OSTbeta: Organic solu 37.7 88 0.0019 23.2 4.8 27 74-101 41-67 (125)
8 PRK09173 F0F1 ATP synthase sub 30.4 43 0.00093 24.5 2.2 30 69-98 3-36 (159)
9 PHA02095 hypothetical protein 28.1 12 0.00026 25.7 -1.1 33 21-54 43-75 (84)
10 PF11694 DUF3290: Protein of u 26.6 1.8E+02 0.0039 21.8 5.0 45 71-116 17-61 (149)
11 MTH00169 ATP8 ATP synthase F0 23.0 1.3E+02 0.0028 19.7 3.2 25 71-95 14-38 (67)
12 PF05586 Ant_C: Anthrax recept 20.6 51 0.0011 23.3 0.9 11 7-17 53-63 (95)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=99.60 E-value=5.7e-16 Score=125.55 Aligned_cols=62 Identities=27% Similarity=0.481 Sum_probs=57.5
Q ss_pred CccccccccccCchHHHHHHHHHHHHHHHHhHHhhcc----CCCcc-cchHHHHHHHHHHHHHhhhhcC
Q psy12593 59 DPRVKDWFLMSGPLPTVCICLSYAFIVKIVGPKLMED----RKPFQ-LRKTLIVYNFLQVLFSSWLFYE 122 (122)
Q Consensus 59 D~r~~~wpLm~sp~~~i~i~~~Yl~~V~~~Gp~~Mkn----RkPf~-Lr~~l~~yNl~~v~~S~~m~~e 122 (122)
.+|+++| |++||++++.++++|+++| ++||++||| |||++ ||+++++||++|+++|++++++
T Consensus 14 ~~~~~~w-l~~~~~~~~~i~~~Yl~~V-~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~ 80 (272)
T PTZ00251 14 GHAVQKW-LASNVDICVYIAAAYLTFV-FKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYR 80 (272)
T ss_pred cHHHHHH-HHhCCHHHHHHHHHHHHHH-HHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999 7999999999999999999 499999975 99999 9999999999999999998753
No 2
>KOG3071|consensus
Probab=99.52 E-value=2.1e-14 Score=117.00 Aligned_cols=68 Identities=44% Similarity=0.653 Sum_probs=60.3
Q ss_pred HhhhcCCCccccccccccCchHHHHHHHHHHHHHHHHhHHhhccCCCcccchHHHHHHHHHHHHHhhhhc
Q psy12593 52 DVMNNRSDPRVKDWFLMSGPLPTVCICLSYAFIVKIVGPKLMEDRKPFQLRKTLIVYNFLQVLFSSWLFY 121 (122)
Q Consensus 52 ~~~~~~~D~r~~~wpLm~sp~~~i~i~~~Yl~~V~~~Gp~~MknRkPf~Lr~~l~~yNl~~v~~S~~m~~ 121 (122)
+.+....|+|++ ||++++++++..++++|+ +|+..||++|+||||++||+++.+||++|++.|++++.
T Consensus 12 ~~~~~~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~ 79 (274)
T KOG3071|consen 12 DNFRWSPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFL 79 (274)
T ss_pred HHhcCCCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677777 899999999999999999 77799999999999999999999999999999998664
No 3
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.50 E-value=3e-14 Score=113.09 Aligned_cols=56 Identities=43% Similarity=0.920 Sum_probs=52.5
Q ss_pred ccccCchHHHHHHHHHHHHHHHHhHHhhccCCCcccchHHHHHHHHHHHHHhhhhcC
Q psy12593 66 FLMSGPLPTVCICLSYAFIVKIVGPKLMEDRKPFQLRKTLIVYNFLQVLFSSWLFYE 122 (122)
Q Consensus 66 pLm~sp~~~i~i~~~Yl~~V~~~Gp~~MknRkPf~Lr~~l~~yNl~~v~~S~~m~~e 122 (122)
.|++||++++.++++|+++| +.||++||+|||++||+++.+||++|+++|++++++
T Consensus 1 Wl~~~~~~~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~ 56 (250)
T PF01151_consen 1 WLMSNPWFPILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYG 56 (250)
T ss_pred CcccCCHHHHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHH
Confidence 14799999999999999999 899999999999999999999999999999999763
No 4
>KOG3072|consensus
Probab=99.08 E-value=1e-10 Score=95.73 Aligned_cols=57 Identities=32% Similarity=0.536 Sum_probs=48.8
Q ss_pred ccccccccccCchHHHHHHHHHHHHHHHHhHHhhccCCCcccchHHHHHHHHHHHHHhh
Q psy12593 60 PRVKDWFLMSGPLPTVCICLSYAFIVKIVGPKLMEDRKPFQLRKTLIVYNFLQVLFSSW 118 (122)
Q Consensus 60 ~r~~~wpLm~sp~~~i~i~~~Yl~~V~~~Gp~~MknRkPf~Lr~~l~~yNl~~v~~S~~ 118 (122)
.++..|+ .+.....+.++++|+++| +.|+++|+|||||+|+++|.+||.++++||+.
T Consensus 29 ~~~~~~~-~~~~~~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~ 85 (282)
T KOG3072|consen 29 ESVVKFF-QEHWPLSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSIL 85 (282)
T ss_pred HHHHHHH-HhccchhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHH
Confidence 3355553 344445899999999999 89999999999999999999999999999986
No 5
>COG5548 Small integral membrane protein [Function unknown]
Probab=58.20 E-value=6.8 Score=28.05 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=14.2
Q ss_pred HHHHHHHhHHhhccCCCcc
Q psy12593 82 AFIVKIVGPKLMEDRKPFQ 100 (122)
Q Consensus 82 l~~V~~~Gp~~MknRkPf~ 100 (122)
++.+ +.++|+|+.|||.-
T Consensus 65 ~Ll~-~~~~R~~~sRKpvP 82 (105)
T COG5548 65 ALLV-FFALRLVRSRKPVP 82 (105)
T ss_pred HHHH-hcchhccccCCCcc
Confidence 3444 78999999999963
No 6
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.16 E-value=93 Score=22.12 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=28.5
Q ss_pred cCchHHHHHHHHHHHHHHHHhHHhhccCCCcccchHHHHHHHHHHHHHhhh
Q psy12593 69 SGPLPTVCICLSYAFIVKIVGPKLMEDRKPFQLRKTLIVYNFLQVLFSSWL 119 (122)
Q Consensus 69 ~sp~~~i~i~~~Yl~~V~~~Gp~~MknRkPf~Lr~~l~~yNl~~v~~S~~m 119 (122)
||+...+..+++.+..+ +...+.-.+++|+-- +.++-|+++++.+++.
T Consensus 2 GS~~Fi~~~~~~~~~Wi--~~N~~~~~~~~fDpy-PFilLnl~lS~~Aa~~ 49 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVWI--LLNILAPPRPAFDPY-PFILLNLVLSLEAAYQ 49 (108)
T ss_pred CcHHHHHHHHHHHHHHH--HHHhhccccCCCCCc-cHHHHHHHHHHHHHHH
Confidence 56666655555554444 344444444566653 3677788888877764
No 7
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=37.66 E-value=88 Score=23.20 Aligned_cols=27 Identities=7% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhccCCCccc
Q psy12593 74 TVCICLSYAFIVKIVGPKLMEDRKPFQL 101 (122)
Q Consensus 74 ~i~i~~~Yl~~V~~~Gp~~MknRkPf~L 101 (122)
.+..+++-+-|+ .+|..+|+||+.-..
T Consensus 41 ~Ls~vvlvi~~~-LLgrsi~ANRnrK~~ 67 (125)
T PF15048_consen 41 ALSFVVLVISFF-LLGRSIQANRNRKMQ 67 (125)
T ss_pred HHHHHHHHHHHH-HHHHHhHhccccccc
Confidence 344444444455 689999999876443
No 8
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=30.37 E-value=43 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=19.4
Q ss_pred cCchHHHHHHHHHHHHHHHHhH----HhhccCCC
Q psy12593 69 SGPLPTVCICLSYAFIVKIVGP----KLMEDRKP 98 (122)
Q Consensus 69 ~sp~~~i~i~~~Yl~~V~~~Gp----~~MknRkP 98 (122)
...|..+.++++++++.++.+| ++|++|+-
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~ 36 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARAD 36 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4457777777777777755454 35777654
No 9
>PHA02095 hypothetical protein
Probab=28.07 E-value=12 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.440 Sum_probs=26.9
Q ss_pred hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHhh
Q psy12593 21 VFCAESTMATTPFPRSAGFKGILESVQDFYFDVM 54 (122)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 54 (122)
+-|.+|. .++|+|.++.+...-+++.+.|+.+.
T Consensus 43 ilciegd-~~~pm~~f~~ii~vp~~~~~dyn~ii 75 (84)
T PHA02095 43 ILCIEGD-KEHPMPDFEHIVEVPDEMAGDYNEII 75 (84)
T ss_pred EEEecCC-CCCCchhheeeeeCchhhcccHHHHH
Confidence 7899998 77899999988888777777777653
No 10
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.64 E-value=1.8e+02 Score=21.77 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred chHHHHHHHHHHHHHHHHhHHhhccCCCcccchHHHHHHHHHHHHH
Q psy12593 71 PLPTVCICLSYAFIVKIVGPKLMEDRKPFQLRKTLIVYNFLQVLFS 116 (122)
Q Consensus 71 p~~~i~i~~~Yl~~V~~~Gp~~MknRkPf~Lr~~l~~yNl~~v~~S 116 (122)
.+..+.++++=++++ +.+-++||+|.-=+-|-+.++==+++.++.
T Consensus 17 ~~~~~~i~~ll~~l~-~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~ 61 (149)
T PF11694_consen 17 YLRYILIIILLLVLI-FFFIKYLRNRLDTKYRDLSIIALLLLLLLI 61 (149)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhhHHHHHHHHHHHHH
Confidence 334444555555555 688999999999998888877555555543
No 11
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=22.98 E-value=1.3e+02 Score=19.69 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHhHHhhcc
Q psy12593 71 PLPTVCICLSYAFIVKIVGPKLMED 95 (122)
Q Consensus 71 p~~~i~i~~~Yl~~V~~~Gp~~Mkn 95 (122)
.|..+...++|.+++....|++.+.
T Consensus 14 ~Wl~i~f~~ly~l~s~~iLPri~~~ 38 (67)
T MTH00169 14 IWTLIILFFLFSLLVNYILPKIQQQ 38 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888899999988899987653
No 12
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=20.58 E-value=51 Score=23.33 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=10.0
Q ss_pred cccccchhHHH
Q psy12593 7 YYPHQGQFQEV 17 (122)
Q Consensus 7 ~~~~~~~~~~~ 17 (122)
|+||.|++.|+
T Consensus 53 YtPIKGrlDAL 63 (95)
T PF05586_consen 53 YTPIKGRLDAL 63 (95)
T ss_pred ccCccchHHHH
Confidence 89999999886
Done!