Query psy12593
Match_columns 122
No_of_seqs 142 out of 783
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:16:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zsu_A TLL2057 protein, cyanoq 19.6 70 0.0024 22.7 2.6 45 2-50 48-93 (130)
2 3arc_L Photosystem II reaction 10.3 2.7E+02 0.0092 15.6 3.4 20 95-114 6-25 (37)
3 4b0f_A C4B-binding protein alp 9.7 1.4E+02 0.0049 18.8 1.7 28 87-114 18-46 (65)
4 3ls0_A SLL1638 protein, PSBQ; 9.0 72 0.0025 22.7 0.1 45 2-50 51-96 (133)
5 1hcw_A BBA1; growth response p 8.7 2.6E+02 0.0088 14.3 2.4 18 27-44 3-20 (26)
6 2hac_A T-cell surface glycopro 7.6 1.8E+02 0.0062 16.0 1.3 17 99-115 6-22 (33)
7 1ux8_A YJBI protein; oxygen st 7.5 5.3E+02 0.018 16.9 4.6 58 29-93 5-63 (132)
8 2wwb_C SEC61BETA, protein tran 6.6 3E+02 0.01 18.4 2.3 19 70-89 69-87 (96)
9 2ww9_C Protein transport prote 6.5 3.5E+02 0.012 17.8 2.6 16 70-85 60-75 (87)
10 2bkm_A Truncated hemoglobin fr 5.9 5.8E+02 0.02 16.5 3.5 40 48-92 22-61 (128)
No 1
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=19.57 E-value=70 Score=22.69 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=31.2
Q ss_pred ccceecccccchhHHHHHH-hhhccCCCCCCCCCchhhHHHHHHHHHHHH
Q psy12593 2 YWVSTYYPHQGQFQEVLQD-VFCAESTMATTPFPRSAGFKGILESVQDFY 50 (122)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 50 (122)
.|+-+=.=|||..+++|+. .+.++.-+|. .-.....+.+++++..
T Consensus 48 ~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~----dqk~A~~lak~l~~~L 93 (130)
T 3zsu_A 48 DWQEARNIMRGPLGEMLMDMRALNRNLLAK----DQPTPTALTRALTDDF 93 (130)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHTSCGG----GSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhchHHHHHHHHHHHHHhcCHh----hHHHHHHHHHHHHHHH
Confidence 5888888899999999999 7777776555 3344445545544443
No 2
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=10.25 E-value=2.7e+02 Score=15.62 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=15.9
Q ss_pred cCCCcccchHHHHHHHHHHH
Q psy12593 95 DRKPFQLRKTLIVYNFLQVL 114 (122)
Q Consensus 95 nRkPf~Lr~~l~~yNl~~v~ 114 (122)
|+.|.+|.+.-..|-+.++.
T Consensus 6 n~q~VELNRTSLy~GLLlif 25 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLIL 25 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHH
Confidence 57788999988888887664
No 3
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=9.67 E-value=1.4e+02 Score=18.79 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=23.1
Q ss_pred HHhHHhhcc-CCCcccchHHHHHHHHHHH
Q psy12593 87 IVGPKLMED-RKPFQLRKTLIVYNFLQVL 114 (122)
Q Consensus 87 ~~Gp~~Mkn-RkPf~Lr~~l~~yNl~~v~ 114 (122)
..|.++|+- -.|.+.+..+-+|-+.+=+
T Consensus 18 ~~G~klmqCLp~p~dVk~ALEvYKlsLEI 46 (65)
T 4b0f_A 18 LTGKRLMQCLPNPEDVKMALEVYKLSLEI 46 (65)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhcCCCHHHHhHHhheeechhhH
Confidence 579999997 5689999999999977643
No 4
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=9.03 E-value=72 Score=22.72 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=30.0
Q ss_pred ccceecccccchhHHHHHH-hhhccCCCCCCCCCchhhHHHHHHHHHHHH
Q psy12593 2 YWVSTYYPHQGQFQEVLQD-VFCAESTMATTPFPRSAGFKGILESVQDFY 50 (122)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 50 (122)
.|+-+=.=|||..+++|+. .+.+++-+|. .-.....+.+++++..
T Consensus 51 ~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~----dqk~A~~lak~l~~~L 96 (133)
T 3ls0_A 51 NWVDTQTYIHGPLGQLRRDMLGLASSLLPK----DQDKAKTLAKEVFGHL 96 (133)
T ss_dssp CHHHHHHHHHTTTTTHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhchHHHHHHHHHHHHHhcChh----hhHHHHHHHHHHHHHH
Confidence 5887778899999999999 6666666544 3334445545444443
No 5
>1hcw_A BBA1; growth response protein, de novo protein design, supersecondary motif; HET: PYA; NMR {} SCOP: k.14.1.1 PDB: 1t8j_A*
Probab=8.68 E-value=2.6e+02 Score=14.30 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=13.4
Q ss_pred CCCCCCCCchhhHHHHHH
Q psy12593 27 TMATTPFPRSAGFKGILE 44 (122)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~ 44 (122)
+-|...|+|++...+++.
T Consensus 3 tvps~tfsrsdelakllr 20 (26)
T 1hcw_A 3 TVPSXTFSRSDELAKLLR 20 (26)
T ss_dssp CSSSCCCSSSHHHHHHHH
T ss_pred ccCcccccccHHHHHHHH
Confidence 456677889988887754
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=7.65 E-value=1.8e+02 Score=15.99 Aligned_cols=17 Identities=18% Similarity=0.469 Sum_probs=12.7
Q ss_pred cccchHHHHHHHHHHHH
Q psy12593 99 FQLRKTLIVYNFLQVLF 115 (122)
Q Consensus 99 f~Lr~~l~~yNl~~v~~ 115 (122)
|-|.+++.+|-++.+++
T Consensus 6 YiLDgiL~iYgii~T~L 22 (33)
T 2hac_A 6 YLLDGILFIYGVILTAL 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 45678888888887764
No 7
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=7.48 E-value=5.3e+02 Score=16.91 Aligned_cols=58 Identities=24% Similarity=0.270 Sum_probs=33.8
Q ss_pred CCCCCCchhhHHHHHHHHHH-HHHHhhhcCCCccccccccccCchHHHHHHHHHHHHHHHHhHHhh
Q psy12593 29 ATTPFPRSAGFKGILESVQD-FYFDVMNNRSDPRVKDWFLMSGPLPTVCICLSYAFIVKIVGPKLM 93 (122)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~D~r~~~wpLm~sp~~~i~i~~~Yl~~V~~~Gp~~M 93 (122)
+.+++.+.-+-+ + ..+.+ .|..+. .||+.+..+- ++.....--...++..+ ..||...
T Consensus 5 ~~tlye~iGG~~-i-~~lv~~FY~~v~---~Dp~l~~~F~-~d~~~~~~~l~~Fl~~~-~GGp~~Y 63 (132)
T 1ux8_A 5 FNAPYEAIGEEL-L-SQLVDTFYERVA---SHPLLKPIFP-SDLTETARKQKQFLTQY-LGGPPLY 63 (132)
T ss_dssp -CCGGGGTHHHH-H-HHHHHHHHHHHH---HCTTTGGGSC-SCCHHHHHHHHHHHHHH-TTSCCHH
T ss_pred CCCHHHHHhhHH-H-HHHHHHHHHHHH---cChHHHHHCc-cCHHHHHHHHHHHHHHH-hCCCccc
Confidence 445555554444 4 44444 455443 2777765542 55666777778888887 6888543
No 8
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=6.61 E-value=3e+02 Score=18.45 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=15.8
Q ss_pred CchHHHHHHHHHHHHHHHHh
Q psy12593 70 GPLPTVCICLSYAFIVKIVG 89 (122)
Q Consensus 70 sp~~~i~i~~~Yl~~V~~~G 89 (122)
+|..++++.++|..+| ++.
T Consensus 69 ~P~~VLv~sl~Fi~~V-i~L 87 (96)
T 2wwb_C 69 GPVPVLVMSLLFIASV-FML 87 (96)
T ss_dssp SSCSHHHHHHHHHHHH-HHH
T ss_pred CCEEehhhHHHHHHHH-HHH
Confidence 6889999999999998 443
No 9
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=6.53 E-value=3.5e+02 Score=17.82 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=14.6
Q ss_pred CchHHHHHHHHHHHHH
Q psy12593 70 GPLPTVCICLSYAFIV 85 (122)
Q Consensus 70 sp~~~i~i~~~Yl~~V 85 (122)
+|..++++.++|..+|
T Consensus 60 ~P~~VLv~sl~FIa~V 75 (87)
T 2ww9_C 60 DSLVVLFLSVGFIFSV 75 (87)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cCeeehhhHHHHHHHH
Confidence 6999999999999988
No 10
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=5.91 E-value=5.8e+02 Score=16.47 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=25.5
Q ss_pred HHHHHhhhcCCCccccccccccCchHHHHHHHHHHHHHHHHhHHh
Q psy12593 48 DFYFDVMNNRSDPRVKDWFLMSGPLPTVCICLSYAFIVKIVGPKL 92 (122)
Q Consensus 48 ~~y~~~~~~~~D~r~~~wpLm~sp~~~i~i~~~Yl~~V~~~Gp~~ 92 (122)
..|..+. .||+.+..+- ++.....--...++..+ +.||..
T Consensus 22 ~FY~~v~---~Dp~l~~~F~-~d~~~~~~~l~~Fl~~~-~GGp~~ 61 (128)
T 2bkm_A 22 AFYRRVA---AHPDLRPIFP-DDLTETAHKQKQFLTQY-LGGPPL 61 (128)
T ss_dssp HHHHHHH---HCTTTGGGSC-SCCHHHHHHHHHHHHHH-TTSCCH
T ss_pred HHHHHHh---cCHHHHHHCc-cCHHHHHHHHHHHHHHH-cCCCCc
Confidence 3455443 2777765542 55566777778888887 688853
Done!