Query psy12593
Match_columns 122
No_of_seqs 142 out of 783
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 23:16:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12593.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12593hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 19.4 63 0.0046 16.8 3.5 20 95-114 6-25 (37)
2 d1idra_ a.1.1.1 (A:) Protozoan 16.3 59 0.0043 20.0 3.2 61 28-92 10-70 (127)
3 d1no1a_ a.179.1.1 (A:) Repliso 11.4 14 0.001 21.5 -1.0 10 4-15 13-22 (67)
4 d1tuba2 d.79.2.1 (A:246-440) T 8.5 1.1E+02 0.0082 20.2 2.8 42 12-53 148-190 (195)
5 d1ux8a_ a.1.1.1 (A:) Protozoan 6.3 2.7E+02 0.02 16.2 4.6 55 31-91 2-56 (119)
6 d2d8za2 g.39.1.3 (A:33-64) Fou 5.0 37 0.0027 17.4 -1.2 15 88-102 10-25 (32)
7 d2gtsa1 a.25.5.1 (A:4-80) Hypo 4.5 2.7E+02 0.02 16.1 2.5 40 8-51 12-59 (77)
8 d2btoa2 d.79.2.1 (A:253-432) T 4.3 1.3E+02 0.0096 19.5 1.1 15 37-51 162-176 (180)
9 d1gsaa1 c.30.1.3 (A:1-122) Pro 4.1 1.3E+02 0.0092 18.7 0.8 17 92-108 84-100 (122)
10 d1zx3a1 a.43.1.6 (A:10-95) Hyp 3.9 3E+02 0.022 16.0 2.4 24 57-85 4-27 (86)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.44 E-value=63 Score=16.83 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=15.9
Q ss_pred cCCCcccchHHHHHHHHHHH
Q psy12593 95 DRKPFQLRKTLIVYNFLQVL 114 (122)
Q Consensus 95 nRkPf~Lr~~l~~yNl~~v~ 114 (122)
|+.|.+|.+.-..|-+.++.
T Consensus 6 n~q~veLNrtsLy~GlLlif 25 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLIL 25 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHH
Confidence 57889999988888877643
No 2
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=16.27 E-value=59 Score=19.97 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHhhhcCCCccccccccccCchHHHHHHHHHHHHHHHHhHHh
Q psy12593 28 MATTPFPRSAGFKGILESVQDFYFDVMNNRSDPRVKDWFLMSGPLPTVCICLSYAFIVKIVGPKL 92 (122)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~D~r~~~wpLm~sp~~~i~i~~~Yl~~V~~~Gp~~ 92 (122)
+|.|-+.|.-+-+.+-+-+...|+.+. .||+...++--.+......-...|+..+ +.||..
T Consensus 10 ~~~SLyerlGG~~~I~~lv~~FY~~i~---~d~~l~~~F~~~d~~~~~~~~~~fl~~~-~GGp~~ 70 (127)
T d1idra_ 10 EPISIYDKIGGHEAIEVVVEDFYVRVL---ADDQLSAFFSGTNMSRLKGKQVEFFAAA-LGGPEP 70 (127)
T ss_dssp CCCCHHHHTTHHHHHHHHHHHHHHHHH---HCTTTGGGGTTCCHHHHHHHHHHHHHHH-TTCSCC
T ss_pred CCCCHHHHhCCHHHHHHHHHHHHHHHH---cChHHHHhcCCCCHHHHHHHHHHHHHHH-hCcCCC
Confidence 444444444455555444445666654 3788777752222334455567888887 688854
No 3
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=11.41 E-value=14 Score=21.52 Aligned_cols=10 Identities=70% Similarity=1.457 Sum_probs=6.6
Q ss_pred ceecccccchhH
Q psy12593 4 VSTYYPHQGQFQ 15 (122)
Q Consensus 4 ~~~~~~~~~~~~ 15 (122)
||.+|| ||||
T Consensus 13 vsefyp--grfq 22 (67)
T d1no1a_ 13 VSEFYP--GRFQ 22 (67)
T ss_dssp HHHHST--TTCC
T ss_pred HHHHCC--CCCC
Confidence 566776 6665
No 4
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.46 E-value=1.1e+02 Score=20.19 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=22.6
Q ss_pred chhHHHHHH-hhhccCCCCCCCCCchhhHHHHHHHHHHHHHHh
Q psy12593 12 GQFQEVLQD-VFCAESTMATTPFPRSAGFKGILESVQDFYFDV 53 (122)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 53 (122)
.||...+++ +|..-++.+.-+-..++.....++++.+.|.+.
T Consensus 148 ~~Fdkl~~rkAflh~Y~~egmee~eF~EA~e~l~~li~eY~~~ 190 (195)
T d1tuba2 148 HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEV 190 (195)
T ss_dssp HHHHHHTTTTCCTTTGGGGSCCSSSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhchHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 344455444 555555543323335666666667776777653
No 5
>d1ux8a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Bacillus subtilis [TaxId: 1423]}
Probab=6.25 E-value=2.7e+02 Score=16.16 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=31.9
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhhcCCCccccccccccCchHHHHHHHHHHHHHHHHhHH
Q psy12593 31 TPFPRSAGFKGILESVQDFYFDVMNNRSDPRVKDWFLMSGPLPTVCICLSYAFIVKIVGPK 91 (122)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~D~r~~~wpLm~sp~~~i~i~~~Yl~~V~~~Gp~ 91 (122)
||+.+.-+ +.+.+-+-..|.... .||+....+ -++.....--...++... +.||.
T Consensus 2 ~~ye~lGg-e~i~~lv~~FY~~v~---~D~~l~~~F-~~~~~~~~~~~~~f~~~~-~gg~~ 56 (119)
T d1ux8a_ 2 APYEAIGE-ELLSQLVDTFYERVA---SHPLLKPIF-PSDLTETARKQKQFLTQY-LGGPP 56 (119)
T ss_dssp CGGGGTHH-HHHHHHHHHHHHHHH---HCTTTGGGS-CSCCHHHHHHHHHHHHHH-TTSCC
T ss_pred CcHHHhhH-HHHHHHHHHHHHHHH---hCHHHHHhc-ccchHHHHHHHHHHHHHH-hhCcc
Confidence 56667755 544333434565554 377776654 344444555667777776 67764
No 6
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97 E-value=37 Score=17.38 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=9.9
Q ss_pred HhHHh-hccCCCcccc
Q psy12593 88 VGPKL-MEDRKPFQLR 102 (122)
Q Consensus 88 ~Gp~~-MknRkPf~Lr 102 (122)
.|+|+ ||+-+||=++
T Consensus 10 ~GQry~~rd~~PyC~~ 25 (32)
T d2d8za2 10 SGQRFTARDDFAYCLN 25 (32)
T ss_dssp TTSCCEESSSSEECHH
T ss_pred cCceeeecCCCeehHH
Confidence 46654 7888887544
No 7
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=4.49 E-value=2.7e+02 Score=16.11 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=22.8
Q ss_pred ccccchhHHHHHH-hhh------c-cCCCCCCCCCchhhHHHHHHHHHHHHH
Q psy12593 8 YPHQGQFQEVLQD-VFC------A-ESTMATTPFPRSAGFKGILESVQDFYF 51 (122)
Q Consensus 8 ~~~~~~~~~~~~~-~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~y~ 51 (122)
.-|-.||.|...+ |+. | ++|+.. +-+.|..++++..+.++
T Consensus 12 v~hlerfkellndevngls~hf~nl~swqd~----~rd~fsevldnlk~tfn 59 (77)
T d2gtsa1 12 VGHLERFKELLREEVNSLSNHFHNLESWRDA----RRDKFSEVLDNLKSTFN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCSH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHhhcchHhhhhh----hHhHHHHHHHHHHHHHH
Confidence 3455677777665 432 2 455544 55666666666555544
No 8
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=4.32 E-value=1.3e+02 Score=19.50 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHH
Q psy12593 37 AGFKGILESVQDFYF 51 (122)
Q Consensus 37 ~~~~~~~~~~~~~y~ 51 (122)
+.....++++.+.|.
T Consensus 162 ~ea~~~~~~li~eY~ 176 (180)
T d2btoa2 162 NVLRASAQELVQSYQ 176 (180)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 9
>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.15 E-value=1.3e+02 Score=18.69 Aligned_cols=17 Identities=29% Similarity=0.510 Sum_probs=13.4
Q ss_pred hhccCCCcccchHHHHH
Q psy12593 92 LMEDRKPFQLRKTLIVY 108 (122)
Q Consensus 92 ~MknRkPf~Lr~~l~~y 108 (122)
+||+=|||+.+.+-..|
T Consensus 84 ~mRkDPPfd~~Yl~~T~ 100 (122)
T d1gsaa1 84 LMRKDPPFDTEFIYATY 100 (122)
T ss_dssp EECCCCCCCHHHHHHHH
T ss_pred EEecCCCCcHHHHHHHH
Confidence 69999999998766554
No 10
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241 {Nitrosomonas europaea [TaxId: 915]}
Probab=3.90 E-value=3e+02 Score=16.01 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=15.8
Q ss_pred CCCccccccccccCchHHHHHHHHHHHHH
Q psy12593 57 RSDPRVKDWFLMSGPLPTVCICLSYAFIV 85 (122)
Q Consensus 57 ~~D~r~~~wpLm~sp~~~i~i~~~Yl~~V 85 (122)
..||-.++|. |++.-.. ++|++=-
T Consensus 4 qpdpmrknwi-menmdsg----viylles 27 (86)
T d1zx3a1 4 QPDPMRKNWI-MENMDSG----VIYLLES 27 (86)
T ss_dssp CCCCSCCCCC-CCSCCHH----HHHHHHH
T ss_pred CCChhHHhHH-Hhccccc----hHHHHHH
Confidence 3588889997 6776554 4455544
Done!