RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12593
(122 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-05
Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 41/145 (28%)
Query: 1 MYWVST----YYPHQGQFQEVLQDVFCAESTMATTPFP----RSAGFKGILESVQDFYFD 52
++++ YP+ +L+D + P P + + + + V
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILED---SLENNEGVPSPMLSISNLTQEQVQDYVNKT--- 356
Query: 53 VMNNRSDPRVK----------DWFLMSGPLPTVCICLS-YAFIVKI----VGPKLMEDRK 97
N P K ++SGP P S Y + + L + R
Sbjct: 357 ---NSHLPAGKQVEISLVNGAKNLVVSGP-P-----QSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 98 PFQLRKTLIVYNFLQVL--F-SSWL 119
PF RK FL V F S L
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLL 432
Score = 40.0 bits (93), Expect = 7e-05
Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 55/154 (35%)
Query: 12 GQ------FQEVLQDVFCAESTMATTPFPRSAG-FKGILESVQD---FY---FDVM---N 55
GQ F+E L+D++ + SA ++ + D + +++
Sbjct: 162 GQGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 56 NRSDPRVKDWFL---MSGPLPTVCICLSYAFIVKIVGPKLMEDRKPFQLRKTL------- 105
N S+ KD+ L +S PL V Y K++G P +LR L
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG------FTPGELRSYLKGATGHS 274
Query: 106 --------------------IVYNFLQVLFSSWL 119
V + VLF ++
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLF--FI 306
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated
hemoglobin, mutant, oxygen storage/transport complex;
HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB:
1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Length = 136
Score = 28.3 bits (63), Expect = 0.38
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 23 CAESTMATTPFPRSAGFKGILESVQDFYFDVMNNRSDPRVKDWF 66
+ + + G + I V+DF+ V +D ++ +F
Sbjct: 6 RLRKREPISIYDKIGGHEAIEVVVEDFFVRV---LADDQLSAFF 46
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus;
hypothetical protein, oxygen transport, transport,
oxygen storage; HET: HEM; 1.5A {Geobacillus
stearothermophilus}
Length = 128
Score = 26.4 bits (58), Expect = 1.8
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 30 TTPFPRSAGFKGILESVQDFYFDVMNNRSDPRVKDWFLMSGPLPTVCICLSYAFIVKIVG 89
T + G + + + V+ FY V + P ++ F L + G
Sbjct: 4 QTLYEAIGGEETVAKLVEAFYRRVA---AHPDLRPIF--PDDLTETAHKQKQFLTQYLGG 58
Query: 90 PKL-MEDRKPFQLRKTLIVYNFLQVLFSSWL 119
P L + LR + + +WL
Sbjct: 59 PPLYTAEHGHPMLRARHLRFEITPKRAEAWL 89
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha
helix, heme, hydroxylation, iron, membrane,
metal-binding; HET: HEM; 1.93A {Mycobacterium
tuberculosis} PDB: 1ngk_A*
Length = 128
Score = 25.2 bits (55), Expect = 5.0
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 28 MATTPFPRSAGFKGILESVQDFYFDVMNNRSDPRVKDWF 66
M + + G K V FY V D ++ +
Sbjct: 1 MPKSFYDAVGGAKTFDAIVSRFYAQV---AEDEVLRRVY 36
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 25.1 bits (55), Expect = 7.3
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 36 SAGFKGILESVQDFYFDVMNNRSDPRVKDW 65
G IL Y D+ + P W
Sbjct: 385 RNGTGLILSPADRTYLDMKYTKDTPLGLSW 414
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP.
RHA1, structural genom 2, protein structure initiative;
1.63A {Rhodococcus SP} SCOP: b.175.1.1
Length = 176
Score = 24.9 bits (54), Expect = 8.2
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 44 ESVQDFYFDVMNNRSDP---RVKDWFL 67
+ QD Y D+ + +D +L
Sbjct: 81 QRDQDHYVDIGTFTRGDDVWKSEDHYL 107
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 25.1 bits (55), Expect = 8.9
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 35 RSAGFKGILESVQDFYFDVMNNRSDPRVKDW 65
++ G K I+ S + Y D+ P W
Sbjct: 404 KAKGMKVIV-SPANAYLDMKYYSDSPIGLQW 433
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 24.9 bits (54), Expect = 9.7
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 72 LPTVCICLSYAFIVKIV 88
P + I Y IV V
Sbjct: 211 GPILIIFFCYFNIVMSV 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.460
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,853,622
Number of extensions: 91560
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 13
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.7 bits)