RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12593
         (122 letters)



>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin
          {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
          Length = 127

 Score = 27.2 bits (60), Expect = 0.33
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 23 CAESTMATTPFPRSAGFKGILESVQDFYFDVMNNRSDPRVKDWF 66
                  + + +  G + I   V+DFY  V    +D ++  +F
Sbjct: 5  RLRKREPISIYDKIGGHEAIEVVVEDFYVRV---LADDQLSAFF 45


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 27.0 bits (60), Expect = 0.58
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 79  LSYAFIVKIVGPKLMEDRKPFQLRKTLIVYNFLQ 112
           L    +V I G K+  D +    R+     N+ +
Sbjct: 382 LPLGILVDIYGRKMQADFEGVLERRIHDFINYGE 415


>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 313

 Score = 26.6 bits (59), Expect = 0.75
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 7/38 (18%)

Query: 46  VQDFYFDVMNNRSDPRVKDW---FLMSGPLPTVCICLS 80
           +    F      SD  V  W   + M  PL    +CL 
Sbjct: 216 IMPAEFSSCPLNSDEEVNKWLHFYEMKAPL----VCLP 249


>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5,
          RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 25.1 bits (55), Expect = 1.5
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 16 EVLQDVFCAESTMATTPFPRSAGFKGILESVQD 48
          E+   V+  E +  +     S+  + IL+ V +
Sbjct: 9  EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAE 41


>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin
          {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId:
          1143]}
          Length = 123

 Score = 24.9 bits (54), Expect = 2.3
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 30 TTPFPRSAGFKGILESVQDFYFDVMNNRSDPRVKDWF 66
          +T + +  G   +  +V  FY  V+    D R+K +F
Sbjct: 1  STLYEKLGGTTAVDLAVDKFYERVLQ---DDRIKHFF 34


>d1sx5a_ c.52.1.2 (A:) Restriction endonuclease EcoRV {Escherichia
          coli [TaxId: 562]}
          Length = 244

 Score = 23.7 bits (51), Expect = 6.7
 Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)

Query: 33 FPRSAGFKGILESVQDFYFDV-MNNRSDPRVK 63
               G+       Q+ Y D  +   S+P  K
Sbjct: 54 IAEKHGYIVEEPKQQNHYPDFTLYKPSEPNKK 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 471,500
Number of extensions: 19045
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 8
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)