BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12594
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 83/194 (42%), Gaps = 2/194 (1%)
Query: 89 VLKDLTKQNKHYKKTALHMLTCVAQQ-DERCAGLIEDKDLDSIISSLHDFDPDTRXXXXX 147
+++ L ++ ++AL L+ +A +E+ +I+ L +++ L +
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 148 XXXXXXKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD 207
+ ++ GALP LVQ+L+SP + A +AL I E ++ D
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 208 CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHL-TYPHGLV 266
+P L++ L++ + +A L++IA + + A+E L + P+ +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKI 196
Query: 267 QKNAATLLRDMCKH 280
QK A L + H
Sbjct: 197 QKEAQEALEKIQSH 210
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKAD 228
LP +VQ L SP +A L I E ++ D +P L++ L++ + +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 229 AFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMC 278
A L++IA + D GA V+ L+ P+ + + A L ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 161 ERIVQCGALPPLVQILAS---PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217
E ++Q G +P VQ L PQL + AA+AL I + E + D +P+ +K
Sbjct: 111 EEVIQSGVVPRFVQFLTREDFPQLQFE--AAWALTNIASGTSENTKVVIDHGAVPIFVKL 168
Query: 218 LNNDEVNVKADAFLCLADIAKDSPSLAS-TIADGATTLAVEHLTYPHGL-VQKNAATLLR 275
L + +V+ A L ++A DSP +A+GA + L L + +NA L
Sbjct: 169 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228
Query: 276 DMCK 279
+ C+
Sbjct: 229 NFCR 232
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ GALP LVQ+L+SP + A +AL I E ++ D +P L++ L++
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 223 VNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHL-TYPHGLVQKNAATLLRDMCKH 280
+ +A L++IA + + +E L ++ + +QK A L + H
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D + ++ GALP LVQ+L+SP + A +AL I E ++ D +P L
Sbjct: 42 DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATL 273
++ L++ + +A L++IA + D GA V+ L+ P+ + + A
Sbjct: 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161
Query: 274 LRDMC 278
L ++
Sbjct: 162 LSNIA 166
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 161 ERIVQCGALPPLVQILAS---PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217
E ++Q G +P VQ L PQL + AA+AL I + E + D +P+ +K
Sbjct: 73 EEVIQSGVVPRFVQFLTREDFPQLQFE--AAWALTNIASGTSENTKVVIDHGAVPIFVKL 130
Query: 218 LNNDEVNVKADAFLCLADIAKDSPSLAS-TIADGATTLAVEHLTYPHGL-VQKNAATLLR 275
L + +V+ A L ++A DSP +A+GA + L L + +NA L
Sbjct: 131 LGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 190
Query: 276 DMCK 279
+ C+
Sbjct: 191 NFCR 194
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ GALP LVQ+L+SP + A +AL I E ++ D +P L++ L++
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 223 VNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHL-TYPHGLVQKNAATLLRDMCKH 280
+ +A L++IA + + +E L ++ + +QK A L + H
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ GALP LVQ+L+SP + A +AL I E ++ D +P L++ L++
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109
Query: 223 VNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMC 278
+ +A L++IA + D GA V+ L+ P+ + + A L ++
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKAD 228
LP +VQ L SP +A L I E ++ D +P L++ L++ + +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 229 AFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMC 278
A L++IA + D GA V+ L+ P+ + + A L ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D + ++ GALP LVQ+L+SP + A +AL I E ++ D +P L
Sbjct: 42 DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATL 273
++ L++ + +A L++IA + D GA V+ L+ P+ + + A
Sbjct: 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161
Query: 274 LRDMC 278
L ++
Sbjct: 162 LSNIA 166
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++Q G +P LV+ + Q L+ AA+AL I + + D D +PL I+ L
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185
Query: 222 EVNVKADAFLCLADIAKDS 240
V VK A L ++A DS
Sbjct: 186 SVEVKEQAIWALGNVAGDS 204
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ G LP L +L+SP+ ++K A + + I + E ++ D ++IP L+K L E
Sbjct: 337 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 396
Query: 223 VNVKADAFLCLAD 235
K +A +++
Sbjct: 397 YKTKKEACWAISN 409
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D+ + + ++QC A+ P++ + S + SL A + L + + + + +P L
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
K + + + DA ++ ++ D P ++ + I VE L++ LVQ
Sbjct: 263 AKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQT---- 317
Query: 273 LLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
PA+ A+G + ++ + +I
Sbjct: 318 --------------------------------------PALRAVGNIVTGNDLQTQVVIN 339
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ +L+ +L P KE ++ A WT+ I + + + A+ + N++ L+
Sbjct: 340 AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++Q G +P LV+ + Q L+ AA+AL I + + D D +PL I+ L
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 222 EVNVKADAFLCLADIAKDS 240
V VK A L ++A DS
Sbjct: 99 SVEVKEQAIWALGNVAGDS 117
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ G LP L +L+SP+ ++K A + + I + E ++ D ++IP L+K L E
Sbjct: 250 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 309
Query: 223 VNVKADAFLCLAD 235
K +A +++
Sbjct: 310 DKTKKEACWAISN 322
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D+ + + ++QC A+ P++ + S + SL A + L + + + + +P L
Sbjct: 116 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 175
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
K + + + DA ++ ++ D P ++ + I VE L++ LVQ
Sbjct: 176 AKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQT---- 230
Query: 273 LLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
PA+ A+G + ++ + +I
Sbjct: 231 --------------------------------------PALRAVGNIVTGNDLQTQVVIN 252
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ +L+ +L P KE ++ A WT+ I + + + A+ + N++ L+
Sbjct: 253 AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 302
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++Q G +P LV+ + Q L+ AA+AL I + + D D +PL I+ L
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 222 EVNVKADAFLCLADIAKDS 240
V VK A L ++A DS
Sbjct: 100 SVEVKEQAIWALGNVAGDS 118
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ G LP L +L+SP+ ++K A + + I + E ++ D ++IP L+K L E
Sbjct: 251 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 310
Query: 223 VNVKADAFLCLAD 235
K +A +++
Sbjct: 311 DKTKKEACWAISN 323
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D+ + + ++QC A+ P++ + S + SL A + L + + + + +P L
Sbjct: 117 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 176
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
K + + + DA ++ ++ D P ++ + I VE L++ LVQ
Sbjct: 177 AKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQT---- 231
Query: 273 LLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
PA+ A+G + ++ + +I
Sbjct: 232 --------------------------------------PALRAVGNIVTGNDLQTQVVIN 253
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ +L+ +L P KE ++ A WT+ I + + + A+ + N++ L+
Sbjct: 254 AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 303
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++Q G +P LV+ + Q L+ AA+AL I + + D D +PL I+ L
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 222 EVNVKADAFLCLADIAKDS 240
V VK A L ++A DS
Sbjct: 99 SVEVKEQAIWALGNVAGDS 117
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ G LP L +L+SP+ ++K A + + I + E ++ D ++IP L+K L E
Sbjct: 250 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 309
Query: 223 VNVKADAFLCLAD 235
K +A +++
Sbjct: 310 DKTKKEACWAISN 322
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D+ + + ++QC A+ P++ + S + SL A + L + + + + +P L
Sbjct: 116 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 175
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
K + + + DA ++ ++ D P ++ + I VE L++ LVQ
Sbjct: 176 AKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQT---- 230
Query: 273 LLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
PA+ A+G + ++ + +I
Sbjct: 231 --------------------------------------PALRAVGNIVTGNDLQTQVVIN 252
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ +L+ +L P KE ++ A WT+ I + + + A+ + N++ L+
Sbjct: 253 AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 302
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++Q G +P LV+ + Q L+ AA+AL I + + D D +PL I+ L
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 222 EVNVKADAFLCLADIAKDS 240
V VK A L ++A DS
Sbjct: 100 SVEVKEQAIWALGNVAGDS 118
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ G LP L +L+SP+ ++K A + + I + E ++ D ++IP L+K L E
Sbjct: 251 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 310
Query: 223 VNVKADAFLCLAD 235
K +A +++
Sbjct: 311 DKTKKEACWAISN 323
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D+ + + ++QC A+ P++ + S + SL A + L + + + + +P L
Sbjct: 117 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 176
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
K + + + DA ++ ++ D P ++ + I VE L++ LVQ
Sbjct: 177 AKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQT---- 231
Query: 273 LLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
PA+ A+G + ++ + +I
Sbjct: 232 --------------------------------------PALRAVGNIVTGNDLQTQVVIN 253
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ +L+ +L P KE ++ A WT+ I + + + A+ + N++ L+
Sbjct: 254 AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 303
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++Q G +P LV+ + Q L+ AA+AL I + + D D +PL I+ L
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 222 EVNVKADAFLCLADIAKDS 240
V VK A L ++A DS
Sbjct: 98 SVEVKEQAIWALGNVAGDS 116
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ G LP L +L+SP+ ++K A + + I + E ++ D ++IP L+K L E
Sbjct: 249 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 308
Query: 223 VNVKADAFLCLAD 235
K +A +++
Sbjct: 309 YKTKKEACWAISN 321
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D+ + + ++QC A+ P++ + S + SL A + L + + + + +P L
Sbjct: 115 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 174
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
K + + + DA ++ ++ D P ++ + I VE L++ LVQ
Sbjct: 175 AKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQT---- 229
Query: 273 LLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
PA+ A+G + ++ + +I
Sbjct: 230 --------------------------------------PALRAVGNIVTGNDLQTQVVIN 251
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ +L+ +L P KE ++ A WT+ I + + + A+ + N++ L+
Sbjct: 252 AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 301
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 163 IVQCGALPPLVQILASPQLS-LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++Q G +P LV+ + Q L+ AA+AL I + + D D +PL I+ L
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 222 EVNVKADAFLCLADIAKDS 240
V VK A L ++A DS
Sbjct: 98 SVEVKEQAIWALGNVAGDS 116
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
++ G LP L +L+SP+ ++K A + + I + E ++ D ++IP L+K L E
Sbjct: 249 VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 308
Query: 223 VNVKADAFLCLAD 235
K +A +++
Sbjct: 309 YKTKKEACWAISN 321
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/231 (17%), Positives = 91/231 (39%), Gaps = 46/231 (19%)
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
D+ + + ++QC A+ P++ + S + SL A + L + + + + +P L
Sbjct: 115 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 174
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
K + + + DA ++ ++ D P ++ + I VE L++ LVQ
Sbjct: 175 AKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELLSHESTLVQT---- 229
Query: 273 LLRDMCKHXXXXXXXXXXXXXXXXXXXXIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
PA+ A+G + ++ + +I
Sbjct: 230 --------------------------------------PALRAVGNIVTGNDLQTQVVIN 251
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ +L+ +L P KE ++ A WT+ I + + + A+ + N++ L+
Sbjct: 252 AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 301
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-ND 221
++Q GA+P +++L+S ++ A +AL I S + DC+++P L++ + +
Sbjct: 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN 162
Query: 222 EVNVKADAFLCLADIAK 238
+ + +A L+++ +
Sbjct: 163 RLTMTRNAVWALSNLCR 179
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-ND 221
++Q GA+P +++L+S ++ A +AL I S + DC+++P L++ + +
Sbjct: 100 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN 159
Query: 222 EVNVKADAFLCLADIAK 238
+ + +A L+++ +
Sbjct: 160 RLTMTRNAVWALSNLCR 176
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 183 LKHAAAFALDGIV--KHS--PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
++ AAA LD +V +H PE ++ S P LI E NVKAD F + K
Sbjct: 372 VRRAAAKCLDAVVSTRHEMLPEFYKTVS-----PALISRFKEREENVKADVFHAYLSLLK 426
Query: 239 DSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKH 280
+ + S + D A+E P ++Q +++ + K
Sbjct: 427 QTRPVQSWLCDPD---AMEQGETPLTMLQSQVPNIVKALHKQ 465
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 183 LKHAAAFALDGIV--KHS--PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
++ AAA LD +V +H PE ++ S P LI E NVKAD F + K
Sbjct: 349 VRRAAAKCLDAVVSTRHEMLPEFYKTVS-----PALISRFKEREENVKADVFHAYLSLLK 403
Query: 239 DSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKH 280
+ + S + D A+E P ++Q +++ + K
Sbjct: 404 QTRPVQSWLCDPD---AMEQGETPLTMLQSQVPNIVKALHKQ 442
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
ER+ + P+ + LA +LS + + G P L +S S+ PL LN
Sbjct: 315 ERVTE-----PVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST-TLNQ 368
Query: 221 DEVNVKADAFLCLADIAKDSPSL 243
DE K AF+C A SP+L
Sbjct: 369 DEAIAKGAAFIC----AIHSPTL 387
>pdb|3QSG|A Chain A, Crystal Structure Of Nad-Binding Phosphogluconate
Dehydrogenase-Like Protein From Alicyclobacillus
Acidocaldarius
Length = 312
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 201 LAESASDCDVIPLLIKALNNDEVNVKADAFLC----LADIAKDSPSLASTIAD 249
+AE A +CDVI L+ A EV +A LC AD SP++ I D
Sbjct: 77 VAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGD 129
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
ER+ + P+ + LA +LS + + G P L +S S+ PL LN
Sbjct: 315 ERVTE-----PVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST-TLNQ 368
Query: 221 DEVNVKADAFLCLADIAKDSPSL 243
DE K AF+C A SP+L
Sbjct: 369 DEAIAKGAAFIC----AIHSPTL 387
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
ER+ + P+ + LA +LS + + G P L +S S+ PL LN
Sbjct: 317 ERVTE-----PVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST-TLNQ 370
Query: 221 DEVNVKADAFLCLADIAKDSPSL 243
DE K AF+C A SP+L
Sbjct: 371 DEAIAKGAAFIC----AIHSPTL 389
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
ER+ + P+ + LA +LS + + G P L +S S+ PL LN
Sbjct: 314 ERVTE-----PVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLST-TLNQ 367
Query: 221 DEVNVKADAFLCLADIAKDSPSL 243
DE K AF+C A SP+L
Sbjct: 368 DEAIAKGAAFIC----AIHSPTL 386
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 22 QTMSAFADKPSTIHFLKDLNVVDLIVPL 49
QTM+ +KPS+ F++DL VD VP+
Sbjct: 314 QTMAELTNKPSSEIFIQDLLAVDTSVPV 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,714,075
Number of Sequences: 62578
Number of extensions: 500766
Number of successful extensions: 1342
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1232
Number of HSP's gapped (non-prelim): 140
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)