Query psy12594
Match_columns 542
No_of_seqs 399 out of 2908
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 23:17:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166|consensus 100.0 1.2E-51 2.7E-56 397.6 39.1 397 86-485 68-491 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 3.5E-50 7.6E-55 358.3 25.6 394 85-482 72-498 (526)
3 PLN03200 cellulose synthase-in 100.0 1.3E-43 2.9E-48 390.3 52.0 485 14-504 72-708 (2102)
4 PLN03200 cellulose synthase-in 100.0 2.5E-42 5.4E-47 380.3 53.5 481 18-505 165-795 (2102)
5 KOG0166|consensus 100.0 2.1E-40 4.5E-45 320.0 39.0 396 43-443 68-488 (514)
6 COG5064 SRP1 Karyopherin (impo 100.0 7.3E-41 1.6E-45 298.9 25.3 362 42-407 72-442 (526)
7 KOG4224|consensus 100.0 4.2E-33 9.2E-38 251.4 21.5 392 40-442 84-494 (550)
8 KOG4224|consensus 100.0 2.3E-31 4.9E-36 240.3 27.4 405 20-438 105-519 (550)
9 PF05804 KAP: Kinesin-associat 100.0 3.2E-25 7E-30 227.3 46.2 476 15-504 137-679 (708)
10 PF05804 KAP: Kinesin-associat 100.0 8.5E-25 1.8E-29 224.2 38.5 372 20-407 269-648 (708)
11 KOG1048|consensus 99.9 4.4E-22 9.6E-27 199.2 23.7 373 126-505 234-706 (717)
12 KOG1048|consensus 99.9 5.5E-19 1.2E-23 177.2 27.7 358 42-406 234-682 (717)
13 KOG2122|consensus 99.8 6E-17 1.3E-21 169.2 27.2 363 18-408 212-601 (2195)
14 PF10508 Proteasom_PSMB: Prote 99.8 5.7E-15 1.2E-19 150.8 41.2 401 88-502 42-483 (503)
15 PF10508 Proteasom_PSMB: Prote 99.8 1.4E-14 3E-19 148.0 41.6 354 44-408 41-420 (503)
16 KOG4199|consensus 99.8 2E-15 4.2E-20 136.3 29.0 318 38-364 101-444 (461)
17 PRK09687 putative lyase; Provi 99.7 3.7E-16 8.1E-21 146.4 23.3 256 40-361 22-279 (280)
18 KOG4199|consensus 99.7 3.7E-15 7.9E-20 134.5 28.1 318 82-407 102-443 (461)
19 KOG2171|consensus 99.7 8.6E-15 1.9E-19 152.5 34.1 349 83-441 117-504 (1075)
20 KOG4500|consensus 99.7 4.6E-15 1E-19 138.1 27.6 383 17-407 59-518 (604)
21 KOG4500|consensus 99.7 6.3E-15 1.4E-19 137.2 25.2 404 52-463 53-499 (604)
22 PRK09687 putative lyase; Provi 99.7 1.1E-15 2.3E-20 143.3 20.3 255 125-438 23-279 (280)
23 PRK13800 putative oxidoreducta 99.7 7.3E-15 1.6E-19 160.7 29.6 277 39-405 619-896 (897)
24 KOG1222|consensus 99.7 7.4E-14 1.6E-18 131.8 29.9 373 20-407 283-662 (791)
25 PRK13800 putative oxidoreducta 99.7 2.8E-14 6.1E-19 156.2 26.4 275 83-437 620-895 (897)
26 PF01602 Adaptin_N: Adaptin N 99.7 1.3E-13 2.8E-18 144.5 29.8 410 20-480 27-444 (526)
27 KOG2122|consensus 99.6 2.5E-14 5.4E-19 150.1 20.8 310 13-324 251-604 (2195)
28 PTZ00429 beta-adaptin; Provisi 99.6 5.6E-12 1.2E-16 132.2 38.2 385 27-445 16-437 (746)
29 KOG1222|consensus 99.6 2.1E-12 4.5E-17 122.2 30.8 372 59-445 281-667 (791)
30 KOG0168|consensus 99.6 2.8E-13 6.1E-18 136.0 25.5 258 43-304 169-438 (1051)
31 KOG1293|consensus 99.6 1.6E-12 3.5E-17 127.9 27.3 425 20-451 29-543 (678)
32 KOG1061|consensus 99.6 2.1E-13 4.5E-18 136.9 21.2 407 40-479 12-452 (734)
33 PF01602 Adaptin_N: Adaptin N 99.6 1.4E-12 3E-17 136.7 28.0 382 16-444 95-486 (526)
34 KOG2171|consensus 99.6 8.7E-12 1.9E-16 130.5 32.3 392 16-421 96-526 (1075)
35 PF04826 Arm_2: Armadillo-like 99.5 2E-12 4.3E-17 118.4 20.1 194 38-239 9-206 (254)
36 PF04826 Arm_2: Armadillo-like 99.5 3.9E-12 8.4E-17 116.5 20.9 194 121-322 8-206 (254)
37 KOG1293|consensus 99.5 4.5E-12 9.8E-17 124.8 22.2 388 18-409 71-534 (678)
38 KOG2023|consensus 99.5 4.8E-12 1E-16 124.2 21.9 349 83-439 127-547 (885)
39 cd00020 ARM Armadillo/beta-cat 99.5 8.9E-13 1.9E-17 108.5 14.7 118 121-238 3-120 (120)
40 KOG1241|consensus 99.5 1.2E-11 2.5E-16 123.5 24.5 425 11-444 185-671 (859)
41 KOG2023|consensus 99.5 2E-12 4.3E-17 126.8 15.9 439 41-505 10-532 (885)
42 cd00256 VATPase_H VATPase_H, r 99.5 8.6E-11 1.9E-15 114.6 27.3 318 84-407 53-424 (429)
43 cd00020 ARM Armadillo/beta-cat 99.5 2.1E-12 4.6E-17 106.3 14.1 117 162-278 2-119 (120)
44 KOG1241|consensus 99.4 2.3E-11 5E-16 121.4 23.1 385 50-446 99-535 (859)
45 cd00256 VATPase_H VATPase_H, r 99.4 2.2E-10 4.7E-15 111.8 29.3 320 41-365 53-426 (429)
46 KOG0168|consensus 99.4 2.2E-10 4.9E-15 115.6 27.2 257 85-346 168-438 (1051)
47 PTZ00429 beta-adaptin; Provisi 99.4 3.6E-09 7.8E-14 111.3 34.7 370 43-445 107-511 (746)
48 KOG1060|consensus 99.3 4E-09 8.6E-14 106.0 27.1 364 44-446 38-463 (968)
49 KOG0946|consensus 99.3 1.4E-08 3E-13 102.3 29.9 322 126-451 23-409 (970)
50 KOG2759|consensus 99.3 3.5E-09 7.7E-14 99.6 24.2 317 85-408 66-438 (442)
51 COG5215 KAP95 Karyopherin (imp 99.2 8.6E-09 1.9E-13 100.1 25.6 413 11-440 189-667 (858)
52 KOG0946|consensus 99.2 2.6E-08 5.6E-13 100.4 29.4 319 85-406 23-397 (970)
53 KOG1062|consensus 99.2 6.9E-09 1.5E-13 104.8 25.1 355 51-443 117-546 (866)
54 KOG2160|consensus 99.2 2.6E-08 5.6E-13 92.8 25.9 187 51-239 93-283 (342)
55 COG5215 KAP95 Karyopherin (imp 99.2 1.5E-08 3.2E-13 98.5 24.6 340 47-408 100-479 (858)
56 KOG1062|consensus 99.1 3.2E-08 6.8E-13 100.2 25.1 367 41-434 142-574 (866)
57 KOG2759|consensus 99.1 5.7E-08 1.2E-12 91.7 25.0 320 41-365 65-439 (442)
58 KOG2160|consensus 99.1 2E-08 4.4E-13 93.5 20.6 184 96-279 95-282 (342)
59 KOG1059|consensus 99.1 3E-07 6.5E-12 92.1 29.1 215 43-280 146-366 (877)
60 PF03224 V-ATPase_H_N: V-ATPas 99.1 3.1E-08 6.6E-13 95.6 21.2 227 42-272 56-307 (312)
61 KOG4413|consensus 99.0 1.5E-06 3.3E-11 79.3 29.3 361 41-406 82-482 (524)
62 KOG0213|consensus 98.9 1.7E-07 3.6E-12 94.0 21.1 349 43-421 718-1081(1172)
63 PF03224 V-ATPase_H_N: V-ATPas 98.9 9.4E-08 2E-12 92.3 18.8 229 169-400 57-306 (312)
64 TIGR02270 conserved hypothetic 98.9 3.1E-07 6.7E-12 90.6 21.7 242 40-364 53-296 (410)
65 KOG1789|consensus 98.9 8.1E-07 1.8E-11 92.2 24.6 355 20-389 1745-2142(2235)
66 TIGR02270 conserved hypothetic 98.8 8.3E-07 1.8E-11 87.6 22.8 240 84-407 54-295 (410)
67 KOG0212|consensus 98.8 4.4E-07 9.5E-12 88.5 19.9 388 40-445 83-484 (675)
68 KOG3678|consensus 98.8 5.5E-07 1.2E-11 85.8 19.5 272 33-320 172-451 (832)
69 KOG3678|consensus 98.8 8.9E-07 1.9E-11 84.5 20.6 158 121-281 176-338 (832)
70 KOG0212|consensus 98.8 1.3E-06 2.9E-11 85.2 21.7 362 47-421 49-422 (675)
71 KOG0213|consensus 98.8 1.7E-06 3.6E-11 87.0 21.4 360 42-409 595-1025(1172)
72 KOG4413|consensus 98.8 3.9E-05 8.4E-10 70.3 28.1 380 56-463 58-461 (524)
73 KOG1824|consensus 98.8 3.1E-06 6.7E-11 87.4 23.5 400 8-447 578-1042(1233)
74 PF05536 Neurochondrin: Neuroc 98.7 4.2E-05 9.2E-10 78.8 31.5 194 43-240 7-215 (543)
75 PF14664 RICTOR_N: Rapamycin-i 98.7 3.3E-06 7.2E-11 82.4 21.8 327 30-363 14-363 (371)
76 KOG1242|consensus 98.7 2E-05 4.2E-10 78.7 26.9 338 42-408 135-483 (569)
77 COG5181 HSH155 U2 snRNP splice 98.7 1.3E-06 2.9E-11 85.9 18.3 260 126-410 605-872 (975)
78 KOG2973|consensus 98.7 1.8E-05 3.8E-10 72.1 23.1 273 86-367 5-318 (353)
79 KOG1824|consensus 98.7 2.8E-05 6.1E-10 80.6 27.2 291 52-367 581-889 (1233)
80 KOG1517|consensus 98.6 3.8E-06 8.3E-11 87.6 20.3 227 58-286 487-739 (1387)
81 KOG1061|consensus 98.6 2.4E-06 5.3E-11 86.9 18.3 374 42-445 87-493 (734)
82 KOG2973|consensus 98.6 2.9E-05 6.3E-10 70.7 23.0 271 127-407 5-314 (353)
83 COG1413 FOG: HEAT repeat [Ener 98.6 2.4E-05 5.2E-10 76.8 24.8 251 41-367 43-307 (335)
84 KOG1059|consensus 98.6 2.3E-05 5E-10 79.0 24.2 216 85-321 145-365 (877)
85 KOG2259|consensus 98.6 5.7E-07 1.2E-11 89.3 12.8 298 46-373 203-520 (823)
86 COG1413 FOG: HEAT repeat [Ener 98.5 4.2E-05 9.1E-10 75.1 24.7 249 84-409 43-305 (335)
87 COG5096 Vesicle coat complex, 98.5 7.9E-05 1.7E-09 77.6 26.9 265 50-346 28-296 (757)
88 KOG1242|consensus 98.5 1.9E-05 4.1E-10 78.8 21.2 338 43-409 98-445 (569)
89 PF14664 RICTOR_N: Rapamycin-i 98.5 2.1E-05 4.6E-10 76.8 21.1 326 74-408 15-364 (371)
90 KOG4535|consensus 98.5 3.2E-06 7E-11 81.0 14.7 384 19-409 126-604 (728)
91 KOG1517|consensus 98.5 7.1E-06 1.5E-10 85.7 17.7 239 142-381 487-749 (1387)
92 KOG1058|consensus 98.5 9.1E-05 2E-09 75.2 24.9 346 93-480 108-463 (948)
93 KOG1077|consensus 98.5 0.00056 1.2E-08 69.1 29.9 368 48-446 153-555 (938)
94 COG5369 Uncharacterized conser 98.5 2.3E-06 5E-11 83.1 12.8 191 143-333 407-606 (743)
95 KOG2259|consensus 98.4 6.6E-06 1.4E-10 82.0 15.4 261 125-406 198-473 (823)
96 KOG0567|consensus 98.4 2.9E-05 6.2E-10 69.3 17.1 252 44-362 6-278 (289)
97 KOG1943|consensus 98.4 0.00022 4.7E-09 75.5 25.6 343 41-408 341-705 (1133)
98 KOG0211|consensus 98.4 0.00018 3.8E-09 75.8 24.8 384 39-443 235-627 (759)
99 COG5369 Uncharacterized conser 98.4 3.8E-06 8.2E-11 81.6 11.5 290 60-362 408-739 (743)
100 KOG0211|consensus 98.3 7.4E-05 1.6E-09 78.6 21.3 399 16-437 253-660 (759)
101 KOG1060|consensus 98.3 0.00021 4.6E-09 73.0 23.3 367 44-448 111-540 (968)
102 PF10165 Ric8: Guanine nucleot 98.3 8.8E-05 1.9E-09 74.9 20.6 262 21-284 2-342 (446)
103 KOG4646|consensus 98.3 7.4E-06 1.6E-10 64.9 9.3 112 3-116 14-131 (173)
104 KOG4646|consensus 98.3 1.6E-05 3.4E-10 63.1 11.1 126 127-254 18-144 (173)
105 COG5181 HSH155 U2 snRNP splice 98.3 6.2E-05 1.4E-09 74.6 17.5 327 42-407 605-945 (975)
106 KOG2734|consensus 98.2 0.0012 2.5E-08 63.4 24.0 239 19-259 103-370 (536)
107 KOG1077|consensus 98.2 0.0021 4.6E-08 65.1 26.7 330 46-408 79-433 (938)
108 PF00514 Arm: Armadillo/beta-c 98.2 3.4E-06 7.3E-11 53.8 4.9 41 156-196 1-41 (41)
109 KOG2734|consensus 98.2 0.00081 1.8E-08 64.4 22.4 229 114-344 113-371 (536)
110 KOG0915|consensus 98.2 0.00092 2E-08 73.3 25.5 295 142-443 974-1308(1702)
111 PF05536 Neurochondrin: Neuroc 98.2 0.0004 8.7E-09 71.7 22.2 236 169-409 7-262 (543)
112 KOG1789|consensus 98.2 0.00042 9.1E-09 72.9 21.7 314 100-421 1741-2140(2235)
113 KOG1240|consensus 98.2 4.9E-05 1.1E-09 80.9 15.2 283 15-321 438-725 (1431)
114 PF00514 Arm: Armadillo/beta-c 98.1 6.7E-06 1.5E-10 52.4 5.0 41 198-238 1-41 (41)
115 COG5096 Vesicle coat complex, 98.1 0.0027 5.9E-08 66.6 25.7 167 134-322 28-196 (757)
116 COG5231 VMA13 Vacuolar H+-ATPa 98.0 0.0017 3.6E-08 59.8 20.4 265 128-408 152-428 (432)
117 PF13646 HEAT_2: HEAT repeats; 98.0 1.4E-05 3.1E-10 61.2 6.3 86 43-150 1-88 (88)
118 PF12348 CLASP_N: CLASP N term 98.0 0.00011 2.4E-09 67.7 12.7 189 94-288 17-215 (228)
119 KOG0567|consensus 98.0 0.00068 1.5E-08 60.7 16.6 88 336-437 189-276 (289)
120 KOG4535|consensus 98.0 0.003 6.4E-08 61.3 22.0 434 51-497 6-576 (728)
121 PF13646 HEAT_2: HEAT repeats; 98.0 2.5E-05 5.4E-10 59.8 6.7 85 169-275 1-88 (88)
122 KOG1240|consensus 97.9 0.00049 1.1E-08 73.7 17.5 297 86-409 424-726 (1431)
123 COG5240 SEC21 Vesicle coat com 97.9 0.0037 8E-08 62.0 22.1 129 55-200 204-336 (898)
124 PF12348 CLASP_N: CLASP N term 97.9 6.1E-05 1.3E-09 69.5 9.8 187 135-328 17-213 (228)
125 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.0015 3.3E-08 60.0 16.6 287 16-320 124-427 (432)
126 COG5240 SEC21 Vesicle coat com 97.8 0.043 9.3E-07 54.8 29.7 209 189-421 249-473 (898)
127 KOG1058|consensus 97.8 0.004 8.7E-08 63.7 20.8 323 46-406 104-461 (948)
128 PF10165 Ric8: Guanine nucleot 97.8 0.0036 7.7E-08 63.4 20.5 261 62-325 2-341 (446)
129 PF13513 HEAT_EZ: HEAT-like re 97.8 5.8E-05 1.3E-09 51.8 5.2 55 349-406 1-55 (55)
130 KOG1078|consensus 97.8 0.028 6.1E-07 58.2 25.7 69 126-199 246-314 (865)
131 PF13513 HEAT_EZ: HEAT-like re 97.7 4.9E-05 1.1E-09 52.1 4.4 55 181-236 1-55 (55)
132 PRK14707 hypothetical protein; 97.7 0.2 4.3E-06 57.8 33.3 422 21-453 186-625 (2710)
133 PF12460 MMS19_C: RNAPII trans 97.6 0.084 1.8E-06 53.3 27.7 341 43-409 1-395 (415)
134 KOG0915|consensus 97.6 0.024 5.1E-07 62.9 23.6 172 41-219 998-1182(1702)
135 PF05918 API5: Apoptosis inhib 97.5 0.0051 1.1E-07 62.5 16.9 251 87-366 26-299 (556)
136 PF12460 MMS19_C: RNAPII trans 97.5 0.14 3.1E-06 51.6 30.0 335 86-445 1-398 (415)
137 PF09759 Atx10homo_assoc: Spin 97.5 0.0011 2.3E-08 51.2 8.6 67 141-207 2-70 (102)
138 smart00185 ARM Armadillo/beta- 97.4 0.00037 8E-09 44.3 5.2 39 158-196 3-41 (41)
139 PF09759 Atx10homo_assoc: Spin 97.4 0.001 2.2E-08 51.3 8.3 67 183-249 2-70 (102)
140 KOG1020|consensus 97.4 0.35 7.6E-06 54.2 32.6 107 3-120 807-928 (1692)
141 PF04078 Rcd1: Cell differenti 97.4 0.02 4.4E-07 51.9 17.5 181 17-236 66-260 (262)
142 PF08569 Mo25: Mo25-like; Int 97.4 0.0094 2E-07 57.4 15.8 213 203-421 70-296 (335)
143 PF04078 Rcd1: Cell differenti 97.3 0.015 3.2E-07 52.9 15.7 218 54-277 8-260 (262)
144 KOG4151|consensus 97.3 0.0064 1.4E-07 63.0 14.9 226 72-302 492-722 (748)
145 PF05918 API5: Apoptosis inhib 97.3 0.0097 2.1E-07 60.6 15.8 293 47-373 29-354 (556)
146 KOG1943|consensus 97.3 0.13 2.8E-06 55.4 24.2 163 251-421 341-513 (1133)
147 smart00185 ARM Armadillo/beta- 97.3 0.00078 1.7E-08 42.7 5.2 39 200-238 3-41 (41)
148 KOG1991|consensus 97.3 0.4 8.7E-06 51.4 29.3 385 59-458 390-818 (1010)
149 KOG4151|consensus 97.2 0.0067 1.4E-07 62.9 13.7 219 28-254 491-715 (748)
150 KOG3036|consensus 97.2 0.053 1.2E-06 48.3 17.2 143 20-163 99-255 (293)
151 KOG1991|consensus 97.2 0.12 2.7E-06 55.1 22.6 300 15-321 387-711 (1010)
152 KOG1248|consensus 97.1 0.61 1.3E-05 51.1 28.9 228 178-411 665-901 (1176)
153 PF11841 DUF3361: Domain of un 97.1 0.011 2.3E-07 49.6 11.6 124 159-283 3-135 (160)
154 KOG4653|consensus 97.1 0.019 4.1E-07 60.0 15.3 222 45-277 731-962 (982)
155 KOG2274|consensus 97.1 0.16 3.4E-06 53.8 21.8 222 52-284 461-694 (1005)
156 PF12717 Cnd1: non-SMC mitotic 97.1 0.027 5.8E-07 49.4 14.5 92 180-280 1-93 (178)
157 PF12717 Cnd1: non-SMC mitotic 97.1 0.02 4.3E-07 50.3 13.6 93 97-197 1-93 (178)
158 KOG1020|consensus 97.0 0.85 1.8E-05 51.4 29.3 142 41-196 816-960 (1692)
159 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0056 1.2E-07 47.2 8.7 92 142-236 3-94 (97)
160 KOG4653|consensus 97.0 0.02 4.4E-07 59.8 15.1 223 172-406 732-962 (982)
161 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0053 1.1E-07 47.3 8.5 84 184-271 3-89 (97)
162 KOG3036|consensus 97.0 0.23 5E-06 44.4 20.9 144 101-245 96-253 (293)
163 KOG2062|consensus 97.0 0.034 7.4E-07 57.2 16.0 155 255-435 524-688 (929)
164 PF11841 DUF3361: Domain of un 97.0 0.036 7.8E-07 46.5 13.5 122 202-324 4-134 (160)
165 KOG2062|consensus 97.0 0.025 5.5E-07 58.1 14.7 127 295-441 522-653 (929)
166 KOG1967|consensus 97.0 0.011 2.4E-07 62.1 12.6 186 169-360 817-1020(1030)
167 KOG2274|consensus 96.9 0.4 8.7E-06 50.9 23.3 227 137-375 462-700 (1005)
168 PF06025 DUF913: Domain of Unk 96.9 0.54 1.2E-05 46.5 24.1 128 121-249 101-243 (379)
169 KOG1248|consensus 96.9 0.44 9.4E-06 52.2 23.7 222 95-321 665-898 (1176)
170 PF08569 Mo25: Mo25-like; Int 96.8 0.21 4.6E-06 48.2 19.2 201 161-365 70-284 (335)
171 PF06025 DUF913: Domain of Unk 96.8 0.17 3.7E-06 50.0 18.6 143 161-304 99-259 (379)
172 KOG1078|consensus 96.7 0.98 2.1E-05 47.4 25.6 245 169-440 247-531 (865)
173 KOG1967|consensus 96.7 0.013 2.8E-07 61.7 10.8 147 124-273 866-1018(1030)
174 PF08045 CDC14: Cell division 96.7 0.028 6E-07 51.5 11.6 100 308-407 107-206 (257)
175 PRK14707 hypothetical protein; 96.6 2.1 4.6E-05 50.1 34.3 410 43-463 165-593 (2710)
176 KOG1832|consensus 96.6 0.09 2E-06 55.2 16.0 327 20-377 373-785 (1516)
177 PF05004 IFRD: Interferon-rela 96.6 0.11 2.4E-06 49.8 15.7 188 128-320 46-256 (309)
178 KOG1566|consensus 96.5 0.69 1.5E-05 43.1 19.4 215 202-421 72-299 (342)
179 PF12719 Cnd3: Nuclear condens 96.5 0.3 6.5E-06 46.9 18.4 171 125-305 26-210 (298)
180 PF11701 UNC45-central: Myosin 96.5 0.023 4.9E-07 48.6 9.5 145 43-194 5-157 (157)
181 KOG1243|consensus 96.5 0.023 5.1E-07 58.3 10.7 228 32-278 284-514 (690)
182 KOG3665|consensus 96.5 0.43 9.4E-06 51.2 20.6 194 190-403 494-692 (699)
183 KOG0414|consensus 96.5 0.054 1.2E-06 58.7 13.6 158 85-262 920-1083(1251)
184 PF13764 E3_UbLigase_R4: E3 ub 96.4 1.8 3.8E-05 47.0 24.9 207 78-302 111-360 (802)
185 PF11698 V-ATPase_H_C: V-ATPas 96.4 0.0084 1.8E-07 47.5 5.7 73 334-408 43-115 (119)
186 KOG2032|consensus 96.4 0.38 8.2E-06 47.6 17.7 289 11-320 228-530 (533)
187 KOG2032|consensus 96.3 0.25 5.4E-06 48.8 16.2 262 83-363 253-530 (533)
188 smart00638 LPD_N Lipoprotein N 96.3 0.16 3.6E-06 53.8 16.8 165 251-435 393-572 (574)
189 PF13764 E3_UbLigase_R4: E3 ub 96.3 1.5 3.3E-05 47.5 23.4 238 36-279 112-406 (802)
190 PF01347 Vitellogenin_N: Lipop 96.3 0.12 2.7E-06 55.3 15.6 197 40-273 394-616 (618)
191 KOG0414|consensus 96.2 0.073 1.6E-06 57.8 13.2 158 168-346 920-1083(1251)
192 PF05004 IFRD: Interferon-rela 96.2 0.31 6.8E-06 46.8 16.3 190 86-278 45-256 (309)
193 PF12719 Cnd3: Nuclear condens 96.1 0.12 2.6E-06 49.6 13.3 169 41-221 26-209 (298)
194 PF07814 WAPL: Wings apart-lik 96.0 0.32 6.8E-06 48.0 15.7 239 85-335 22-313 (361)
195 KOG2956|consensus 95.9 0.45 9.7E-06 46.8 15.8 182 88-279 290-477 (516)
196 PF01347 Vitellogenin_N: Lipop 95.9 0.14 3.1E-06 54.9 14.0 166 252-436 432-617 (618)
197 PF07814 WAPL: Wings apart-lik 95.9 0.25 5.4E-06 48.7 14.4 254 16-282 38-358 (361)
198 PF11701 UNC45-central: Myosin 95.9 0.094 2E-06 44.8 10.0 145 211-361 5-156 (157)
199 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.017 3.6E-07 45.9 4.9 72 250-321 42-115 (119)
200 PF02985 HEAT: HEAT repeat; I 95.8 0.011 2.4E-07 34.7 3.0 29 169-197 2-30 (31)
201 PF12530 DUF3730: Protein of u 95.8 1.2 2.6E-05 41.0 17.6 201 169-390 2-216 (234)
202 COG5098 Chromosome condensatio 95.7 0.066 1.4E-06 54.8 9.5 193 294-507 894-1100(1128)
203 smart00638 LPD_N Lipoprotein N 95.7 0.39 8.4E-06 51.0 15.9 132 85-235 394-542 (574)
204 COG5116 RPN2 26S proteasome re 95.6 0.71 1.5E-05 46.5 15.9 131 255-410 521-652 (926)
205 KOG3665|consensus 95.6 2.2 4.7E-05 46.0 20.9 148 315-463 494-676 (699)
206 PF08045 CDC14: Cell division 95.5 0.18 4E-06 46.2 10.7 99 98-196 105-207 (257)
207 PF02985 HEAT: HEAT repeat; I 95.4 0.03 6.5E-07 32.8 3.8 29 211-239 2-30 (31)
208 KOG1832|consensus 95.4 2 4.3E-05 45.8 18.7 375 19-409 328-774 (1516)
209 KOG2999|consensus 95.4 0.9 2E-05 45.6 15.6 153 169-322 85-243 (713)
210 KOG1243|consensus 95.2 0.47 1E-05 49.1 13.6 184 122-318 327-512 (690)
211 KOG2956|consensus 95.1 1.5 3.2E-05 43.4 15.8 175 54-238 300-477 (516)
212 KOG2025|consensus 95.0 1.7 3.6E-05 45.2 16.8 128 224-360 61-189 (892)
213 PF11864 DUF3384: Domain of un 95.0 3.7 8.1E-05 42.1 20.0 91 224-321 230-330 (464)
214 COG5218 YCG1 Chromosome conden 95.0 3.9 8.5E-05 41.7 18.8 104 83-196 90-196 (885)
215 COG5098 Chromosome condensatio 94.9 0.77 1.7E-05 47.4 14.1 141 170-325 895-1041(1128)
216 KOG2025|consensus 94.8 2.1 4.6E-05 44.5 16.9 102 167-274 85-188 (892)
217 COG5218 YCG1 Chromosome conden 94.6 2.7 5.9E-05 42.7 16.6 108 40-156 90-198 (885)
218 PF04063 DUF383: Domain of unk 94.5 0.38 8.2E-06 42.4 9.7 124 177-302 5-157 (192)
219 KOG2999|consensus 94.5 0.89 1.9E-05 45.7 13.0 155 126-282 84-245 (713)
220 COG5656 SXM1 Importin, protein 94.5 6.1 0.00013 41.6 19.2 275 125-408 408-711 (970)
221 PF14668 RICTOR_V: Rapamycin-i 94.4 0.26 5.7E-06 35.5 7.0 66 142-209 4-70 (73)
222 KOG2611|consensus 94.4 6 0.00013 39.3 19.0 228 172-407 16-273 (698)
223 PF14668 RICTOR_V: Rapamycin-i 94.1 0.37 8.1E-06 34.7 7.3 66 309-376 4-69 (73)
224 PF12530 DUF3730: Protein of u 94.0 4.8 0.0001 37.0 20.6 201 86-307 2-218 (234)
225 COG5116 RPN2 26S proteasome re 94.0 0.44 9.6E-06 47.9 9.9 120 208-345 550-673 (926)
226 KOG1820|consensus 93.9 1.1 2.4E-05 48.5 13.4 189 42-239 254-444 (815)
227 KOG1949|consensus 93.7 2 4.4E-05 44.6 14.1 146 44-196 177-331 (1005)
228 KOG1788|consensus 93.5 2.2 4.8E-05 46.3 14.3 276 176-462 476-782 (2799)
229 PLN03076 ARF guanine nucleotid 93.5 8.4 0.00018 45.9 20.4 286 52-345 1148-1513(1780)
230 PF04063 DUF383: Domain of unk 93.5 0.74 1.6E-05 40.6 9.5 109 96-206 7-141 (192)
231 KOG0891|consensus 93.4 4.4 9.6E-05 49.1 18.1 270 91-368 488-767 (2341)
232 KOG1788|consensus 93.1 12 0.00026 41.1 18.8 239 135-387 477-784 (2799)
233 KOG1820|consensus 93.0 3.5 7.5E-05 44.8 15.5 180 91-279 260-443 (815)
234 KOG2137|consensus 92.7 4.2 9.2E-05 42.6 14.9 134 122-263 386-521 (700)
235 KOG1992|consensus 92.6 17 0.00037 38.9 23.9 375 45-445 92-531 (960)
236 PF14500 MMS19_N: Dos2-interac 92.5 9.2 0.0002 35.8 16.1 216 45-280 3-238 (262)
237 PF01603 B56: Protein phosphat 92.5 3.9 8.5E-05 41.1 14.4 235 34-285 126-376 (409)
238 KOG4464|consensus 92.4 12 0.00025 36.6 16.4 137 17-155 63-232 (532)
239 PF10363 DUF2435: Protein of u 92.3 0.45 9.8E-06 36.3 5.8 84 86-178 5-88 (92)
240 PF06371 Drf_GBD: Diaphanous G 92.2 1.2 2.7E-05 39.2 9.5 77 119-195 101-186 (187)
241 COG5209 RCD1 Uncharacterized p 92.1 7.1 0.00015 34.8 13.4 142 102-245 118-274 (315)
242 PF08167 RIX1: rRNA processing 92.1 2.1 4.5E-05 36.9 10.5 112 292-409 25-144 (165)
243 COG5209 RCD1 Uncharacterized p 92.1 3.6 7.7E-05 36.5 11.6 99 17-115 116-220 (315)
244 PF08506 Cse1: Cse1; InterPro 92.1 11 0.00025 37.2 16.7 139 169-316 212-370 (370)
245 KOG2137|consensus 91.9 1.4 3.1E-05 45.9 10.4 169 168-346 350-520 (700)
246 PF06371 Drf_GBD: Diaphanous G 91.8 1.9 4E-05 38.1 10.2 108 44-153 69-186 (187)
247 PF08506 Cse1: Cse1; InterPro 91.7 15 0.00032 36.4 17.1 128 264-403 225-370 (370)
248 PF10363 DUF2435: Protein of u 91.5 1.4 3E-05 33.6 7.6 70 212-283 6-76 (92)
249 PF11865 DUF3385: Domain of un 91.5 1.6 3.4E-05 37.4 8.9 38 334-371 10-47 (160)
250 PF11865 DUF3385: Domain of un 91.0 2.3 5E-05 36.4 9.4 145 84-237 10-156 (160)
251 PF11707 Npa1: Ribosome 60S bi 91.0 16 0.00036 35.5 19.7 155 86-240 58-239 (330)
252 PF08324 PUL: PUL domain; Int 90.9 8 0.00017 36.4 14.1 183 44-228 66-264 (268)
253 KOG1822|consensus 90.6 43 0.00093 39.7 21.1 231 43-281 878-1129(2067)
254 PF13251 DUF4042: Domain of un 90.5 7.3 0.00016 34.0 12.1 140 183-322 2-175 (182)
255 KOG2933|consensus 90.4 2.3 5E-05 39.7 9.3 143 255-412 93-238 (334)
256 KOG2933|consensus 90.4 1.3 2.7E-05 41.4 7.6 141 85-237 89-233 (334)
257 KOG1822|consensus 90.1 47 0.001 39.4 20.8 297 56-363 799-1126(2067)
258 KOG1566|consensus 90.1 17 0.00037 34.3 18.6 203 160-365 72-287 (342)
259 PF13251 DUF4042: Domain of un 89.9 3.7 8.1E-05 35.8 9.8 140 15-156 1-176 (182)
260 PF08167 RIX1: rRNA processing 89.7 2.1 4.5E-05 36.9 8.2 112 85-199 26-146 (165)
261 PF08324 PUL: PUL domain; Int 89.3 1.7 3.7E-05 41.0 8.0 159 212-371 66-238 (268)
262 PF14500 MMS19_N: Dos2-interac 89.2 19 0.00042 33.6 17.0 213 89-321 4-237 (262)
263 cd03568 VHS_STAM VHS domain fa 89.0 2.5 5.4E-05 35.4 7.9 73 41-113 37-110 (144)
264 PF11707 Npa1: Ribosome 60S bi 88.8 25 0.00053 34.3 20.7 156 127-282 58-240 (330)
265 cd03567 VHS_GGA VHS domain fam 88.0 3.4 7.5E-05 34.3 7.9 73 41-113 38-116 (139)
266 cd03569 VHS_Hrs_Vps27p VHS dom 87.8 3.5 7.5E-05 34.5 7.9 73 41-113 41-114 (142)
267 cd03561 VHS VHS domain family; 87.2 4.4 9.5E-05 33.5 8.2 73 41-113 37-112 (133)
268 KOG2611|consensus 87.2 35 0.00076 34.3 18.5 131 46-180 16-165 (698)
269 PF12830 Nipped-B_C: Sister ch 87.0 18 0.00039 31.9 12.5 146 85-240 9-169 (187)
270 PF01603 B56: Protein phosphat 86.8 37 0.00081 34.2 16.3 255 60-328 109-377 (409)
271 COG5656 SXM1 Importin, protein 86.7 48 0.001 35.4 27.7 349 27-389 446-827 (970)
272 PF14225 MOR2-PAG1_C: Cell mor 86.7 28 0.0006 32.6 14.8 172 126-319 65-252 (262)
273 KOG0891|consensus 86.1 15 0.00032 45.0 14.4 268 48-324 488-766 (2341)
274 KOG0413|consensus 84.9 5.9 0.00013 42.9 9.4 127 139-280 945-1074(1529)
275 KOG1993|consensus 84.4 64 0.0014 34.8 23.9 337 55-408 501-864 (978)
276 PF12830 Nipped-B_C: Sister ch 84.3 28 0.00062 30.6 14.2 144 210-364 9-167 (187)
277 PF13001 Ecm29: Proteasome sta 83.8 30 0.00066 35.9 14.2 172 51-240 247-445 (501)
278 PF06685 DUF1186: Protein of u 83.8 36 0.00079 31.4 14.5 87 98-206 56-152 (249)
279 smart00288 VHS Domain present 83.7 7.2 0.00016 32.1 7.9 73 41-113 37-111 (133)
280 KOG1525|consensus 83.5 95 0.0021 36.0 22.2 167 225-408 238-405 (1266)
281 PF12031 DUF3518: Domain of un 83.2 3.9 8.5E-05 36.9 6.3 82 99-180 139-229 (257)
282 PLN03076 ARF guanine nucleotid 83.0 52 0.0011 39.6 16.9 264 136-409 1148-1490(1780)
283 PF10274 ParcG: Parkin co-regu 82.2 30 0.00066 30.1 11.2 73 168-241 39-112 (183)
284 PF08216 CTNNBL: Catenin-beta- 81.1 2.9 6.3E-05 32.6 4.2 41 19-59 65-105 (108)
285 PF12031 DUF3518: Domain of un 80.8 3.3 7.1E-05 37.4 5.0 81 56-138 139-229 (257)
286 KOG0301|consensus 79.4 88 0.0019 33.0 17.6 167 90-262 550-728 (745)
287 KOG0413|consensus 79.2 8 0.00017 42.0 7.9 125 182-320 946-1072(1529)
288 PF11864 DUF3384: Domain of un 78.4 86 0.0019 32.3 22.9 252 132-407 35-329 (464)
289 PF13001 Ecm29: Proteasome sta 78.2 58 0.0013 33.9 14.0 172 135-321 247-443 (501)
290 PRK09169 hypothetical protein; 78.0 1.8E+02 0.0039 35.8 29.1 16 221-236 370-385 (2316)
291 PF06685 DUF1186: Protein of u 77.9 58 0.0013 30.1 13.0 112 40-166 30-154 (249)
292 PF03130 HEAT_PBS: PBS lyase H 76.9 3.4 7.5E-05 23.1 2.7 26 351-387 1-26 (27)
293 cd03561 VHS VHS domain family; 75.8 43 0.00094 27.5 10.6 70 210-279 38-112 (133)
294 PF10274 ParcG: Parkin co-regu 75.3 42 0.00092 29.3 10.0 80 84-163 38-118 (183)
295 KOG2011|consensus 74.8 1.1E+02 0.0024 34.4 15.2 244 12-276 167-432 (1048)
296 PF14726 RTTN_N: Rotatin, an a 74.5 26 0.00057 27.0 7.7 67 166-233 29-95 (98)
297 PF14225 MOR2-PAG1_C: Cell mor 74.5 76 0.0016 29.7 13.4 175 41-236 64-252 (262)
298 KOG2011|consensus 74.3 1.5E+02 0.0032 33.5 16.0 132 177-318 297-432 (1048)
299 KOG2005|consensus 74.2 1.2E+02 0.0027 32.0 14.7 103 252-365 641-744 (878)
300 PF10521 DUF2454: Protein of u 73.8 39 0.00085 32.0 10.6 71 126-196 120-203 (282)
301 PF08389 Xpo1: Exportin 1-like 73.5 13 0.00029 30.9 6.8 126 56-191 3-148 (148)
302 PF10521 DUF2454: Protein of u 73.0 32 0.0007 32.6 9.9 70 84-153 119-202 (282)
303 PF00790 VHS: VHS domain; Int 72.5 12 0.00027 31.1 6.1 73 41-113 42-118 (140)
304 KOG1410|consensus 72.0 1.4E+02 0.003 31.7 21.6 314 45-387 9-355 (1082)
305 cd03568 VHS_STAM VHS domain fa 71.4 19 0.00042 30.1 7.0 72 125-196 37-110 (144)
306 cd03569 VHS_Hrs_Vps27p VHS dom 71.3 25 0.00054 29.4 7.6 71 209-279 41-114 (142)
307 PF04869 Uso1_p115_head: Uso1 70.7 1E+02 0.0023 29.6 13.2 142 222-363 51-230 (312)
308 KOG1949|consensus 69.7 1.6E+02 0.0035 31.5 21.0 182 87-278 177-369 (1005)
309 PF14726 RTTN_N: Rotatin, an a 68.1 44 0.00096 25.8 7.7 64 82-145 28-91 (98)
310 PF08389 Xpo1: Exportin 1-like 67.8 15 0.00034 30.5 6.0 126 266-403 4-148 (148)
311 PF04388 Hamartin: Hamartin pr 66.3 2E+02 0.0043 31.2 15.2 139 209-368 4-144 (668)
312 COG5537 IRR1 Cohesin [Cell div 65.0 1.7E+02 0.0037 30.6 13.0 143 45-198 279-424 (740)
313 cd03565 VHS_Tom1 VHS domain fa 65.0 53 0.0011 27.4 8.3 73 41-113 38-115 (141)
314 KOG1848|consensus 64.8 1E+02 0.0022 35.5 12.4 224 177-407 852-1131(1610)
315 KOG0392|consensus 64.7 2.2E+02 0.0048 32.8 14.7 176 139-322 143-326 (1549)
316 smart00567 EZ_HEAT E-Z type HE 64.7 12 0.00025 21.3 3.2 28 350-388 2-29 (30)
317 KOG0301|consensus 64.0 2E+02 0.0044 30.5 14.9 164 134-303 553-727 (745)
318 PF12463 DUF3689: Protein of u 63.5 1.4E+02 0.0031 28.5 12.3 125 204-328 4-180 (303)
319 cd03567 VHS_GGA VHS domain fam 63.3 39 0.00085 28.1 7.2 71 126-196 39-116 (139)
320 PF00790 VHS: VHS domain; Int 62.4 90 0.0019 25.9 9.8 69 211-279 44-118 (140)
321 PF12074 DUF3554: Domain of un 61.7 1.6E+02 0.0036 28.7 14.9 214 17-242 4-239 (339)
322 PF12463 DUF3689: Protein of u 60.8 1.6E+02 0.0034 28.2 12.2 127 160-286 2-180 (303)
323 smart00288 VHS Domain present 60.2 96 0.0021 25.5 10.4 70 210-279 38-111 (133)
324 KOG1993|consensus 60.1 2.6E+02 0.0057 30.5 23.9 264 45-330 530-821 (978)
325 KOG2005|consensus 59.0 2.5E+02 0.0054 29.9 14.9 283 42-368 416-708 (878)
326 KOG0889|consensus 58.7 2.7E+02 0.0058 36.0 15.2 179 167-345 1126-1330(3550)
327 PF12726 SEN1_N: SEN1 N termin 58.2 1E+02 0.0022 33.9 11.4 138 46-196 446-585 (727)
328 KOG0889|consensus 57.7 5.2E+02 0.011 33.7 17.3 180 208-389 1125-1331(3550)
329 cd00197 VHS_ENTH_ANTH VHS, ENT 57.6 79 0.0017 25.1 8.0 72 41-112 37-114 (115)
330 PF04499 SAPS: SIT4 phosphatas 54.9 1.7E+02 0.0036 30.2 11.5 84 325-409 53-149 (475)
331 PF08216 CTNNBL: Catenin-beta- 53.5 15 0.00033 28.7 3.0 42 59-102 64-105 (108)
332 cd08050 TAF6 TATA Binding Prot 53.5 74 0.0016 31.2 8.5 109 168-278 211-339 (343)
333 KOG1988|consensus 53.4 3.5E+02 0.0075 29.8 14.4 243 48-320 31-280 (970)
334 KOG4231|consensus 53.0 9.8 0.00021 38.2 2.3 63 134-196 337-399 (763)
335 KOG4337|consensus 52.5 3.1E+02 0.0068 29.1 16.2 229 208-447 358-600 (896)
336 KOG1525|consensus 52.3 4.5E+02 0.0098 30.9 23.8 161 267-441 239-405 (1266)
337 KOG2149|consensus 50.7 1.5E+02 0.0033 29.3 9.7 114 85-198 59-172 (393)
338 PF01365 RYDR_ITPR: RIH domain 50.2 39 0.00085 30.3 5.7 115 244-364 36-169 (207)
339 PF08713 DNA_alkylation: DNA a 50.1 1.9E+02 0.0041 25.8 11.5 141 44-208 54-196 (213)
340 PF14631 FancD2: Fanconi anaem 49.5 5.4E+02 0.012 30.9 16.7 102 47-154 441-542 (1426)
341 PF12054 DUF3535: Domain of un 49.0 3.1E+02 0.0067 28.0 16.9 79 181-263 101-181 (441)
342 KOG1791|consensus 48.6 2.8E+02 0.0062 32.7 12.5 187 117-305 1430-1641(1758)
343 PF06012 DUF908: Domain of Unk 48.5 82 0.0018 30.7 7.9 61 101-161 239-304 (329)
344 PF01365 RYDR_ITPR: RIH domain 48.4 68 0.0015 28.7 6.9 97 139-240 75-171 (207)
345 KOG2676|consensus 48.0 30 0.00065 33.3 4.5 62 228-289 375-439 (478)
346 PF12074 DUF3554: Domain of un 47.3 2.8E+02 0.0061 27.0 16.2 195 85-284 23-240 (339)
347 PF12054 DUF3535: Domain of un 47.2 3.3E+02 0.0072 27.8 14.7 109 56-168 102-211 (441)
348 KOG4524|consensus 47.1 84 0.0018 34.7 8.1 92 85-177 804-899 (1014)
349 PF11791 Aconitase_B_N: Aconit 46.6 25 0.00055 29.3 3.4 31 126-156 95-125 (154)
350 PF04869 Uso1_p115_head: Uso1 46.4 2.8E+02 0.0061 26.8 15.5 139 180-318 51-228 (312)
351 cd08050 TAF6 TATA Binding Prot 46.1 74 0.0016 31.2 7.2 70 126-196 211-297 (343)
352 PF04388 Hamartin: Hamartin pr 45.5 3.2E+02 0.0069 29.7 12.3 62 222-283 81-144 (668)
353 PF12231 Rif1_N: Rap1-interact 45.1 3.2E+02 0.007 27.1 24.2 177 51-237 3-203 (372)
354 cd03572 ENTH_epsin_related ENT 44.6 1.7E+02 0.0036 23.7 8.7 69 251-319 38-117 (122)
355 KOG2199|consensus 44.2 1.1E+02 0.0023 30.1 7.4 74 40-113 44-118 (462)
356 KOG1848|consensus 43.1 4.7E+02 0.01 30.7 13.0 108 213-320 1001-1131(1610)
357 PF12231 Rif1_N: Rap1-interact 42.8 3.5E+02 0.0076 26.9 21.9 132 138-278 59-203 (372)
358 KOG2149|consensus 42.4 3.5E+02 0.0076 26.8 10.8 115 126-241 59-173 (393)
359 KOG2676|consensus 42.2 39 0.00084 32.5 4.3 63 104-166 376-441 (478)
360 PF06012 DUF908: Domain of Unk 42.1 1.5E+02 0.0032 28.9 8.6 63 182-245 237-304 (329)
361 PF14666 RICTOR_M: Rapamycin-i 41.9 2.7E+02 0.0059 25.4 11.6 129 55-196 78-225 (226)
362 PF08713 DNA_alkylation: DNA a 41.4 2.6E+02 0.0056 24.9 12.1 139 128-290 54-195 (213)
363 KOG1087|consensus 41.3 97 0.0021 31.7 7.2 72 41-112 38-111 (470)
364 KOG2549|consensus 38.7 4.3E+02 0.0094 27.5 11.1 108 169-278 241-369 (576)
365 PF12397 U3snoRNP10: U3 small 38.7 2E+02 0.0044 22.9 7.8 105 168-277 7-120 (121)
366 PF04499 SAPS: SIT4 phosphatas 37.4 2.2E+02 0.0047 29.4 9.2 80 242-321 53-148 (475)
367 KOG4524|consensus 37.2 1E+02 0.0022 34.1 6.8 91 211-303 805-900 (1014)
368 PF11791 Aconitase_B_N: Aconit 36.2 2.6E+02 0.0057 23.5 8.5 57 352-421 80-136 (154)
369 PLN03205 ATR interacting prote 35.6 4E+02 0.0086 26.4 9.8 155 85-241 324-519 (652)
370 KOG1992|consensus 35.5 6.4E+02 0.014 27.8 24.9 115 52-182 16-141 (960)
371 PF14663 RasGEF_N_2: Rapamycin 35.4 80 0.0017 25.2 4.6 38 42-81 9-46 (115)
372 KOG4464|consensus 35.4 4.7E+02 0.01 26.2 18.8 83 138-220 110-198 (532)
373 PF07539 DRIM: Down-regulated 35.0 95 0.0021 25.9 5.1 30 40-69 16-45 (141)
374 KOG0392|consensus 34.9 1.7E+02 0.0038 33.6 8.2 106 43-153 818-924 (1549)
375 PF09450 DUF2019: Domain of un 33.6 22 0.00048 27.7 1.1 28 42-69 48-75 (106)
376 KOG2549|consensus 33.0 3.6E+02 0.0079 28.0 9.6 141 86-237 209-369 (576)
377 PF12783 Sec7_N: Guanine nucle 32.5 3.2E+02 0.0069 23.3 10.3 83 205-290 69-157 (168)
378 PF14666 RICTOR_M: Rapamycin-i 32.5 3.9E+02 0.0085 24.4 12.8 124 19-154 83-225 (226)
379 PF03810 IBN_N: Importin-beta 31.8 1.7E+02 0.0037 20.8 5.7 34 377-410 14-47 (77)
380 KOG2085|consensus 31.2 1.7E+02 0.0038 29.0 6.8 50 20-69 156-205 (457)
381 cd03565 VHS_Tom1 VHS domain fa 31.0 3.1E+02 0.0067 22.8 8.5 76 335-410 39-117 (141)
382 PF14663 RasGEF_N_2: Rapamycin 30.3 99 0.0021 24.7 4.4 39 126-165 9-47 (115)
383 PF07571 DUF1546: Protein of u 29.9 1.3E+02 0.0029 22.8 4.8 60 348-408 19-78 (92)
384 PF04821 TIMELESS: Timeless pr 29.5 4.8E+02 0.01 24.5 11.8 166 127-322 15-209 (266)
385 PF12765 Cohesin_HEAT: HEAT re 29.4 46 0.001 20.9 1.9 25 209-233 18-42 (42)
386 PF12726 SEN1_N: SEN1 N termin 28.4 8.3E+02 0.018 26.9 30.8 91 349-442 495-586 (727)
387 PF08767 CRM1_C: CRM1 C termin 26.7 5.9E+02 0.013 24.6 13.8 149 182-333 42-210 (319)
388 KOG2312|consensus 26.7 9.5 0.00021 39.6 -2.4 152 21-176 14-170 (847)
389 PF07571 DUF1546: Protein of u 26.5 1.8E+02 0.004 22.0 5.1 57 221-278 18-77 (92)
390 PF08064 UME: UME (NUC010) dom 26.2 3.2E+02 0.0069 21.4 6.8 67 209-280 11-84 (107)
391 PF09758 FPL: Uncharacterised 26.1 3.4E+02 0.0075 22.8 6.9 86 322-408 14-101 (149)
392 KOG2038|consensus 25.4 9.3E+02 0.02 26.5 16.3 277 42-336 305-620 (988)
393 PF09324 DUF1981: Domain of un 25.1 2.3E+02 0.005 21.1 5.3 66 332-402 15-82 (86)
394 PLN03205 ATR interacting prote 24.8 1.9E+02 0.0041 28.5 5.8 113 294-407 325-445 (652)
395 PF08623 TIP120: TATA-binding 24.4 3.7E+02 0.0081 23.2 7.0 93 139-236 41-145 (169)
396 PF07923 N1221: N1221-like pro 24.1 1.9E+02 0.004 27.7 5.8 54 250-303 59-127 (293)
397 KOG2085|consensus 23.8 6.5E+02 0.014 25.2 9.2 80 55-134 147-227 (457)
398 PF09758 FPL: Uncharacterised 22.9 2.3E+02 0.0049 23.9 5.3 121 30-152 15-147 (149)
399 cd03572 ENTH_epsin_related ENT 22.9 4.1E+02 0.0089 21.5 10.4 84 190-278 24-118 (122)
400 PF12783 Sec7_N: Guanine nucle 22.8 4.8E+02 0.01 22.2 12.6 85 80-165 69-157 (168)
401 PF01465 GRIP: GRIP domain; I 22.6 2.1E+02 0.0045 18.5 4.0 33 416-449 12-44 (46)
402 KOG2229|consensus 22.2 8.9E+02 0.019 25.1 12.0 135 169-316 18-161 (616)
403 KOG1791|consensus 22.1 1.4E+03 0.031 27.5 14.6 203 75-278 1430-1659(1758)
404 cd00197 VHS_ENTH_ANTH VHS, ENT 21.8 4E+02 0.0087 20.9 7.3 69 126-194 38-113 (115)
405 KOG2153|consensus 21.5 4.1E+02 0.0088 28.2 7.7 69 125-196 324-392 (704)
406 PF06786 UPF0253: Uncharacteri 21.2 1.8E+02 0.004 20.0 3.5 21 388-408 40-60 (66)
407 PF09324 DUF1981: Domain of un 21.1 1.9E+02 0.0042 21.6 4.2 62 167-233 17-83 (86)
408 PRK04964 hypothetical protein; 21.0 1.9E+02 0.0041 20.0 3.5 21 388-408 40-60 (66)
409 cd03562 CID CID (CTD-Interacti 20.9 4.2E+02 0.009 20.8 7.1 86 138-233 18-103 (114)
410 PF08623 TIP120: TATA-binding 20.4 5.7E+02 0.012 22.1 7.5 93 55-152 41-145 (169)
No 1
>KOG0166|consensus
Probab=100.00 E-value=1.2e-51 Score=397.65 Aligned_cols=397 Identities=19% Similarity=0.279 Sum_probs=361.0
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594 86 VALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAER 162 (542)
Q Consensus 86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (542)
.+.++..+.+.++..+..+...++.+.+. ++.+..++..|+++.+|..|... ++.++..|+|+|.|+++++.+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 67778888888988899999999997644 35555666779999999999755 5999999999999999999999999
Q ss_pred HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCh
Q psy12594 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEV-NVKADAFLCLADIAKDSP 241 (542)
Q Consensus 163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~ 241 (542)
+++.|++|.|++++.+++..+++.|.|+|+|++.+++.++..+++.|++++|+.++..++. .+.+.+.|+|+|||++..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999997765 799999999999999874
Q ss_pred hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 242 SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 242 ~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
.....-.-..++| |..++.+.|+++...++|++++|+.++++..+.+++.|++++|+.+|.+.++.++.+|++++||++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 3444444468999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHH
Q psy12594 321 AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCK 400 (542)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~ 400 (542)
.+++.+++.+++.++++.|..++..++...++++|||+++||++|++++++.+++.|++|.|+.+|.+. ++++|++|+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--ef~~rKEAa 385 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--EFDIRKEAA 385 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--chHHHHHHH
Confidence 999999999999999999999999766668999999999999999999999999999999999999988 479999999
Q ss_pred HHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhh--------hHHHHhcchHHhhh
Q psy12594 401 NALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVAR--------RSFVTSHCLRKVQE 461 (542)
Q Consensus 401 ~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~--------~~~~~~g~~~~l~~ 461 (542)
||++|+.. ..+.+++||.+|. ..|.++...++.++.+++..++... ..+.+.||+++++.
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~-~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~ 464 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT-CPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN 464 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhccc-CCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH
Confidence 99999953 4678999999999 9999999999999999998765433 47889999999999
Q ss_pred cC--CCCcHH-HHHHHHhccCccchhc
Q psy12594 462 IE--PTPEIA-PHLKTINACFPNEVIH 485 (542)
Q Consensus 462 l~--~~~~~~-~a~~~l~~~~~~~~~~ 485 (542)
++ .|.+++ +|..+|++||++|...
T Consensus 465 LQ~hen~~Iy~~A~~II~~yf~~e~~~ 491 (514)
T KOG0166|consen 465 LQSHENEEIYKKAYKIIDTYFSEEDDE 491 (514)
T ss_pred hhccccHHHHHHHHHHHHHhcCCCccc
Confidence 99 777888 5999999999977444
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-50 Score=358.35 Aligned_cols=394 Identities=16% Similarity=0.204 Sum_probs=352.8
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhc--CChhhhhHhhcCChHHHHhhh-cCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQ--QDERCAGLIEDKDLDSIISSL-HDFDPDTRANAALALGGLAKDNKHFAE 161 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (542)
-+|.+.+-|-+++.+.+..+..-++.+.+ ++|.++.+++.|++|.++++| +.+....+.+|+|+|.|++++.....+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 56888888888888889999888888653 356677799999999999999 455577788999999999998888788
Q ss_pred HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcC
Q psy12594 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKD 239 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~ 239 (542)
.+++.|++|.++++|.+++.++++.+.|+|+|++.+++.+++.+.+.|++++++.++.+. +..+.+.+.|+|+|||+.
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 899999999999999999999999999999999999999999999999999999999866 458999999999999997
Q ss_pred ChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594 240 SPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318 (542)
Q Consensus 240 ~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 318 (542)
...-...-.-...+| |..++-..|+++...|+|++.+|+....+..+.+.+.|..++|+++|.+++..++.+|++.+||
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN 311 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN 311 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence 543334334457899 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH
Q psy12594 319 MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK 398 (542)
Q Consensus 319 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~ 398 (542)
+..+++.+++.+++.|+++.+..+|.+.. +.+|++|||+++|+++++.++.+.+++.+++|.|+.+|...+ ..+|++
T Consensus 312 IVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae--~k~kKE 388 (526)
T COG5064 312 IVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE--YKIKKE 388 (526)
T ss_pred eeecCccceehheecccHHHHHHHhcChh-hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH--HHHHHH
Confidence 99999999999999999999999999854 599999999999999999999999999999999999999874 589999
Q ss_pred HHHHHHHHHh-------------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhh-----------hHHHHhc
Q psy12594 399 CKNALNILIP-------------KCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVAR-----------RSFVTSH 454 (542)
Q Consensus 399 a~~aL~nl~~-------------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~-----------~~~~~~g 454 (542)
||||+.|... ..|++++||++|. ..|..+...++.++.|++..++..+ .++.+.|
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~-~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Ag 467 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD-VVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAG 467 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh-ccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcc
Confidence 9999999842 3478999999999 8999999999999999999875432 2445699
Q ss_pred chHHhhhcC--CCCcHH-HHHHHHhccCccc
Q psy12594 455 CLRKVQEIE--PTPEIA-PHLKTINACFPNE 482 (542)
Q Consensus 455 ~~~~l~~l~--~~~~~~-~a~~~l~~~~~~~ 482 (542)
|.+.+..++ .|.+++ +|..+|++||.+|
T Consensus 468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred cHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 999999998 778887 7999999999755
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=390.26 Aligned_cols=485 Identities=17% Similarity=0.175 Sum_probs=409.3
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC---hHHH-HHHHhcCcHHHH
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH---VDIR-QEVLERNLVALV 89 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~---~~~~-~~i~~~~~l~~L 89 (542)
...|..++.++.+++.+++++..++..|++|+|+.+|++.+++.|..|+.+|..|+ .+ +..+ ..++..|++|.|
T Consensus 72 ~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS--~~~~~D~~~~~I~v~~GaVp~L 149 (2102)
T PLN03200 72 LGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVS--SGGLSDHVGSKIFSTEGVVPSL 149 (2102)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHH--cCcchhhhhhhhhhhcCChHHH
Confidence 44677888999999999999999999999999999999999999999999999999 54 3333 446689999999
Q ss_pred HHhhccCC---HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594 90 LKDLTKQN---KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ 165 (542)
Q Consensus 90 v~~L~~~~---~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 165 (542)
++++++.+ ..++..++.+|.+++...+.... +++.|+++.++.+|+++++..+..|+++|.+++...++.+..+++
T Consensus 150 v~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe 229 (2102)
T PLN03200 150 WDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD 229 (2102)
T ss_pred HHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999753 44677888999999988877766 889999999999999999999999999999999877888999999
Q ss_pred cCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC---------HHHHHHHHHHHHH
Q psy12594 166 CGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE---------VNVKADAFLCLAD 235 (542)
Q Consensus 166 ~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~---------~~~~~~a~~~L~~ 235 (542)
.|+||.|+++|+++ ++.+|+.|+|+|.||+.++++.+..+++.|++|.|++++..++ ..++++++|+|+|
T Consensus 230 aGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsN 309 (2102)
T PLN03200 230 AGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALAN 309 (2102)
T ss_pred CCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHH
Confidence 99999999999864 5799999999999999999999999999999999999998554 3469999999999
Q ss_pred HhcCChh-----------hHH-----------------------------------------------------------
Q psy12594 236 IAKDSPS-----------LAS----------------------------------------------------------- 245 (542)
Q Consensus 236 l~~~~~~-----------~~~----------------------------------------------------------- 245 (542)
||.+.+. .+.
T Consensus 310 Icgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALas 389 (2102)
T PLN03200 310 ICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALAS 389 (2102)
T ss_pred HhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 9985221 000
Q ss_pred ---------HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHH
Q psy12594 246 ---------TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA 315 (542)
Q Consensus 246 ---------~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~ 315 (542)
.+.+.++++ |+.++...+.+++..++|+|++++.++.+..+.+.+.|+++.|+++|.+++..++..|+++
T Consensus 390 l~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~ 469 (2102)
T PLN03200 390 LYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVAL 469 (2102)
T ss_pred hcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 001112334 4555555667899999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594 316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL 395 (542)
Q Consensus 316 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v 395 (542)
|++++.++++.+..+++.|+++.|+++|.++ +..++++|+|+|+|++.++++.+..+.+.|+++.|+++|+++ +.++
T Consensus 470 L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~ 546 (2102)
T PLN03200 470 LAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKG 546 (2102)
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHH
Confidence 9999999999999999999999999999985 469999999999999876555555555889999999999987 4699
Q ss_pred HHHHHHHHHHHHh-----------------------------------------------hCCCchhhHHhhcCCCCHHH
Q psy12594 396 KSKCKNALNILIP-----------------------------------------------KCENPKELEQMLLGNVSEEL 428 (542)
Q Consensus 396 ~~~a~~aL~nl~~-----------------------------------------------~~~~i~~L~~lL~~~~~~~v 428 (542)
|+.|+|+|.|++. ..+.++.|.+||+ +.++.+
T Consensus 547 q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~-sgs~~i 625 (2102)
T PLN03200 547 QEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS-SSKEET 625 (2102)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc-CCCHHH
Confidence 9999999999941 1356889999999 889999
Q ss_pred HHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHH-HHHHHHhccCc----cchhcccCccchHHHHHHHhh
Q psy12594 429 LASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIA-PHLKTINACFP----NEVIHFVSPHYLEDLINRLDQ 501 (542)
Q Consensus 429 ~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~-~a~~~l~~~~~----~~~~~~~~~~~~~~~l~~~~~ 501 (542)
.+.+.++|.++....++....++..|+++++..+. .+.+++ ++.+.|..++. ++...+...+..+.+.+.+..
T Consensus 626 kk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~ 705 (2102)
T PLN03200 626 QEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKS 705 (2102)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhC
Confidence 99999999999998888888999999999999988 444455 46666666652 223344567778888888765
Q ss_pred cCC
Q psy12594 502 FNP 504 (542)
Q Consensus 502 ~~~ 504 (542)
.+.
T Consensus 706 ~d~ 708 (2102)
T PLN03200 706 SSI 708 (2102)
T ss_pred CCh
Confidence 533
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=380.25 Aligned_cols=481 Identities=17% Similarity=0.189 Sum_probs=398.4
Q ss_pred HHHHHHHHHhcCCCCch-HHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc
Q psy12594 18 LCFVQTMSAFADKPSTI-HFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK 95 (542)
Q Consensus 18 ~~~~~~l~~l~~~~~~~-~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~ 95 (542)
..++-+|.+++.+++++ ..++++|++|.|+.+|+++++..|..|+.+|.+++ .. ++.+..+++.|++|.|+++|++
T Consensus 165 ~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~La--ss~ee~~~aVIeaGaVP~LV~LL~s 242 (2102)
T PLN03200 165 GLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLM--MAFESSISKVLDAGAVKQLLKLLGQ 242 (2102)
T ss_pred HHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHCCCHHHHHHHHcc
Confidence 34568899999988877 45689999999999999999999999999998888 65 7789999999999999999986
Q ss_pred -CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCC---------HHHHHHHHHHHHHhhcCChH------
Q psy12594 96 -QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFD---------PDTRANAALALGGLAKDNKH------ 158 (542)
Q Consensus 96 -~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~---------~~~~~~a~~~L~~l~~~~~~------ 158 (542)
.++.+|..|+++|.+++.++++.+. +++.|+++.|++++..++ ..+++.|.|+|.|++.+.+.
T Consensus 243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~ 322 (2102)
T PLN03200 243 GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG 322 (2102)
T ss_pred CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence 5579999999999999999888888 999999999999997554 34689999999998864211
Q ss_pred -----H--------------------------------------------------------------------HHHHHH
Q psy12594 159 -----F--------------------------------------------------------------------AERIVQ 165 (542)
Q Consensus 159 -----~--------------------------------------------------------------------~~~i~~ 165 (542)
. ++.+.+
T Consensus 323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~ 402 (2102)
T PLN03200 323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH 402 (2102)
T ss_pred HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence 0 011122
Q ss_pred cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy12594 166 CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245 (542)
Q Consensus 166 ~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 245 (542)
.++++.|+.++...+.++|..++|+|.+++.++.+.+..+.+.|++|.|+++|.+++..+++.++|++++++..+.+.+.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455566666666678999999999999998899999999999999999999999999999999999999998877888
Q ss_pred HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh
Q psy12594 246 TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE 324 (542)
Q Consensus 246 ~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 324 (542)
.+.+.|++| |+++|.+++..+++.|+|+|.|++.+.++....+.+.|+++.|+++|+++++..+..|+++|.++....+
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 999999999 9999999999999999999999999877776666688999999999999999999999999999963221
Q ss_pred H-------------------------------------HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh
Q psy12594 325 Q-------------------------------------IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV 367 (542)
Q Consensus 325 ~-------------------------------------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 367 (542)
. ..+.....++++.|.+++.+++ +.+++.|+|+|.+++.+++
T Consensus 563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ikk~Aa~iLsnL~a~~~ 641 (2102)
T PLN03200 563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQEKAASVLADIFSSRQ 641 (2102)
T ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCh
Confidence 1 0111124589999999999975 5999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHH
Q psy12594 368 DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAF 436 (542)
Q Consensus 368 ~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l 436 (542)
++...++..|+++.++.+|.++ +++++++|+|+|.|+.. ..|.+++|+++|+ +.+.++...++.+|
T Consensus 642 d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~-~~d~~v~e~Al~AL 718 (2102)
T PLN03200 642 DLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK-SSSIEVAEQAVCAL 718 (2102)
T ss_pred HHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh-CCChHHHHHHHHHH
Confidence 9999999999999999999987 56999999999999962 3578999999999 99999999999999
Q ss_pred HhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHHH-HHHH---HhccCccch-h--cccCccchHHHHHHHhhcCCC
Q psy12594 437 AKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAP-HLKT---INACFPNEV-I--HFVSPHYLEDLINRLDQFNPQ 505 (542)
Q Consensus 437 ~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~~-a~~~---l~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~ 505 (542)
.|++..++ .+..+.+.|++..|.++. .++..++ |.+. |.+-++.+. . ....-+....+++.+...+.+
T Consensus 719 anLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~ 795 (2102)
T PLN03200 719 ANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD 795 (2102)
T ss_pred HHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence 99998765 456677889999999998 4555664 4444 444555332 2 112345566666666555333
No 5
>KOG0166|consensus
Probab=100.00 E-value=2.1e-40 Score=320.04 Aligned_cols=396 Identities=18% Similarity=0.280 Sum_probs=345.9
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG- 120 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~- 120 (542)
.+.++..+.|+++..+..+...++++.+.......+.++..|.+|.+|++|.. .++.++..|+|+|.|+++++.+..+
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 67778888999999999999999999966554445556666999999999974 6699999999999999999999988
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH-hHHHHHHHHHHHHhcCC-
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL-SLKHAAAFALDGIVKHS- 198 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~nl~~~~- 198 (542)
+++.|++|.|+.++.+++..+++.|+|+|+|++.+++.+|+.+++.|++++|+.++..++. .+.+.+.|+|.|||++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999998774 78999999999999976
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
|......+ ..++|.|..++.+.|+++...++|++++|+.+..+..+.+++.|+++ |+.+|.+.+..++..|+.++.|+
T Consensus 228 P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 228 PSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 32222222 56789999999999999999999999999999888999999999999 99999999999999999999999
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA 356 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 356 (542)
+.++....+.+++.|+++.|..++. ++...++..|+|+|+|++.++.++.+.+++.+++|.|+.++.+.. -.+|++|+
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAa 385 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAA 385 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHH
Confidence 9999999999999999999999999 556669999999999999999999999999999999999999964 68999999
Q ss_pred HHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh------------------hCCCchhhH
Q psy12594 357 WTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP------------------KCENPKELE 417 (542)
Q Consensus 357 ~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~------------------~~~~i~~L~ 417 (542)
|+++|++.+ ++++...+++.|.++.++++|.-. +.++-..+.-+|.|+.+ .++.+..+.
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~--D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE 463 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP--DVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIE 463 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC--ChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHH
Confidence 999999865 678999999999999999999765 45677778888888853 234455554
Q ss_pred HhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594 418 QMLLGNVSEELLASILCAFAKILPCD 443 (542)
Q Consensus 418 ~lL~~~~~~~v~~~~l~~l~~ll~~~ 443 (542)
.|=. ..+.++-+.+...+.+....+
T Consensus 464 ~LQ~-hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 464 NLQS-HENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred Hhhc-cccHHHHHHHHHHHHHhcCCC
Confidence 4444 555567777777776665543
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.3e-41 Score=298.86 Aligned_cols=362 Identities=17% Similarity=0.248 Sum_probs=328.0
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
-+|.|..-|.|+|-+.+..|..-++++.+.++.+..+.++++|++|.++++|. ++....+..|+|+|.|++++.....+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 56888888889999999999999999997777777788899999999999995 57788899999999999999888888
Q ss_pred -HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC--HhHHHHHHHHHHHHhcC
Q psy12594 121 -LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ--LSLKHAAAFALDGIVKH 197 (542)
Q Consensus 121 -~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nl~~~ 197 (542)
+++.|++|.++++|.+++.++++.++|+|+|++.+++.+++.+++.|++++++.++.+.. ..+.+.+.|+|.|||++
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 899999999999999999999999999999999999999999999999999999998764 58899999999999996
Q ss_pred C-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594 198 S-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR 275 (542)
Q Consensus 198 ~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~ 275 (542)
. |......+ ...+|.|.+++...|+++...|+|++++|+....+....++..|+.+ |+.+|.+++..++..++..+.
T Consensus 232 knP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 232 KNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 4 22223333 46789999999999999999999999999999888899999999999 999999999999999999999
Q ss_pred HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
|+..++....+.+++.|+++.+..+|.++...+++.|||+|+|+..++.++.+.+++.+.+|+|+.++.. .+-.++++|
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEA 389 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEA 389 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHH
Confidence 9999998888889999999999999999999999999999999999999999999999999999999998 456899999
Q ss_pred HHHHHHhhcC---ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 356 AWTLGQIGKH---SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 356 ~~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
||++.|.+.+ .|+..+.+.+.|++..|.++|.-.+ ..+-+-+.-++.|++
T Consensus 390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d--Nkiiev~LD~~eniL 442 (526)
T COG5064 390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD--NKIIEVALDAIENIL 442 (526)
T ss_pred HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC--ccchhhhHHHHHHHH
Confidence 9999999876 4788999999999999999999763 246666777888875
No 7
>KOG4224|consensus
Probab=100.00 E-value=4.2e-33 Score=251.38 Aligned_cols=392 Identities=20% Similarity=0.240 Sum_probs=336.4
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
...+.+..-++++.++.+|..|..++++++ .+-+.+..+++.+++..|+.-+..+..++|..+..++.+++..++...
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlA--Vn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ 161 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLA--VNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV 161 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccce--eccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence 345666777889999999999999999999 887788888889999999988888889999999999999998864444
Q ss_pred hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
++...|++.++.++-++.|..+|..+..+|.++.. ..++++.++..|++|.|+.++++.++.+|+.|+.+++||+- +.
T Consensus 162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~ 239 (550)
T KOG4224|consen 162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DR 239 (550)
T ss_pred hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hH
Confidence 49999999999998889999999999999999986 66779999999999999999999999999999999999998 67
Q ss_pred HHHHHhhhCC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 200 ELAESASDCD--VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 200 ~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
..++.+.+.+ .++.|+.++.+++++++..|.-+|.|++.+. +++..+++.|.+| ++.+|+++.-......+.|++|
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 7888888777 9999999999999999999999999999987 5888899999999 9999999976666777789999
Q ss_pred HhcCChHHHHHHHhcCCHHHHHHhhhcCCcc-chHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594 277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGY-NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
++.+.-. .-.+.+.|++.+||++|+..+.+ ++..|..+|.||+...+.....+.++|.++.+..++..++- .+|...
T Consensus 319 isihplN-e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv-svqsei 396 (550)
T KOG4224|consen 319 ISIHPLN-EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV-SVQSEI 396 (550)
T ss_pred cccccCc-ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh-hHHHHH
Confidence 9976533 33477899999999999987665 99999999999999888899999999999999999999764 899988
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC---------------chhhHHhh
Q psy12594 356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN---------------PKELEQML 420 (542)
Q Consensus 356 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~---------------i~~L~~lL 420 (542)
..++..++ .++..+..+.+.|.++.|+..+-+. +++++-.|+.||.|+..+.+. -..|.+.+
T Consensus 397 sac~a~La-l~d~~k~~lld~gi~~iLIp~t~s~--s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl 473 (550)
T KOG4224|consen 397 SACIAQLA-LNDNDKEALLDSGIIPILIPWTGSE--SEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFL 473 (550)
T ss_pred HHHHHHHH-hccccHHHHhhcCCcceeecccCcc--chhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 88898884 4566788999999999999999887 579999999999999754322 12455555
Q ss_pred cCCCCHHHHHHHHHHHHhhCCC
Q psy12594 421 LGNVSEELLASILCAFAKILPC 442 (542)
Q Consensus 421 ~~~~~~~v~~~~l~~l~~ll~~ 442 (542)
. +.+..+...+.|.|..++..
T Consensus 474 ~-S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 474 A-SHELTFRHIARWTIQQLLED 494 (550)
T ss_pred h-hhHHHHHHHHHHHHHHHHHh
Confidence 5 44545555666666555443
No 8
>KOG4224|consensus
Probab=100.00 E-value=2.3e-31 Score=240.26 Aligned_cols=405 Identities=14% Similarity=0.160 Sum_probs=343.5
Q ss_pred HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHH
Q psy12594 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH 99 (542)
Q Consensus 20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~ 99 (542)
+-..+.+++-+-+++..+++.+++.+|+.-+.++..++|..++.++.+|+ ..++++..+...|.+.++.++-++.+..
T Consensus 105 a~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLa--T~d~nk~kiA~sGaL~pltrLakskdir 182 (550)
T KOG4224|consen 105 AGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLA--TFDSNKVKIARSGALEPLTRLAKSKDIR 182 (550)
T ss_pred hhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhh--ccccchhhhhhccchhhhHhhcccchhh
Confidence 44567778888888989999999998888888888899999999999999 6688889999999999999988889999
Q ss_pred HHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhcc
Q psy12594 100 YKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG--ALPPLVQILA 177 (542)
Q Consensus 100 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~ 177 (542)
+|.++..+|.++....+..+.++..|++|.|+.+++++|+++|..++.++.+++. +...++.+.+.+ ++|.|++++.
T Consensus 183 vqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd 261 (550)
T KOG4224|consen 183 VQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMD 261 (550)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHh
Confidence 9999999999998655444449999999999999999999999999999999997 455688888887 9999999999
Q ss_pred CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HH
Q psy12594 178 SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AV 256 (542)
Q Consensus 178 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~ 256 (542)
++++.++-.|..+|+||+. +.+....+++.|.+|.++++++++..+.....+.++.|++.+. -....+.+.|.+. |+
T Consensus 262 ~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp-lNe~lI~dagfl~pLV 339 (550)
T KOG4224|consen 262 DGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP-LNEVLIADAGFLRPLV 339 (550)
T ss_pred CCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc-CcccceecccchhHHH
Confidence 9999999999999999999 6778889999999999999999998888888888999999885 3667788899999 99
Q ss_pred HhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCc
Q psy12594 257 EHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG 335 (542)
Q Consensus 257 ~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 335 (542)
.+|... +++++.+|..+|++|+.........+++.|.+|.+..++.+...+++...-.++..|+.. +.....+.+.|.
T Consensus 340 rlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi 418 (550)
T KOG4224|consen 340 RLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGI 418 (550)
T ss_pred HHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCC
Confidence 999988 577999999999999988888888899999999999999999999998888888888655 445667889999
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc------CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 336 VGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE------NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 336 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~------~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
++.|+.+..+.+ .+++-+|+.+|.|++..-. +-..+++. |.-..|++.+.++. ..++.-+.|++..+...
T Consensus 419 ~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss~v~-~YarviEawd~P~~gi~g~L~Rfl~S~~--~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 419 IPILIPWTGSES-EEVRGNAAAALINLSSDVE-HYARVIEAWDHPVQGIQGRLARFLASHE--LTFRHIARWTIQQLLED 494 (550)
T ss_pred cceeecccCccc-hhhcccHHHHHHhhhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHh
Confidence 999999999865 5999999999999965543 33334332 55677888888763 47899999999999865
Q ss_pred CCCchhhHHhhcCCCCHHHHHHHHHHHHh
Q psy12594 410 CENPKELEQMLLGNVSEELLASILCAFAK 438 (542)
Q Consensus 410 ~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ 438 (542)
- .+++..+++ ++| ++.+..-..+.+
T Consensus 495 h--~~~~~~~i~-~~d-dii~~~~~~~~r 519 (550)
T KOG4224|consen 495 H--DLPLTAFIQ-SSD-DIIELLNDIVAR 519 (550)
T ss_pred C--CccHHHHHh-Cch-hHHHHHHHHHHH
Confidence 3 566667776 444 444333333333
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=3.2e-25 Score=227.27 Aligned_cols=476 Identities=15% Similarity=0.151 Sum_probs=363.4
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcCCC---hHHHHHHHHHHHHhHccCChHHHHHHHhcCc-----
Q psy12594 15 RARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLADKV---PSIQHAALATLGKLMCAKHVDIRQEVLERNL----- 85 (542)
Q Consensus 15 ~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s~~---~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~----- 85 (542)
+.+......|..++.+|+|-+.++.. -.+..|...|+.+. .+....-+.++..++ ...+....+....+
T Consensus 137 ~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS--~f~~fH~~l~~~kiG~l~m 214 (708)
T PF05804_consen 137 PEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFS--NFSQFHPILAHYKIGSLCM 214 (708)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH--hHHHHHHHHHhccHHHHHH
Confidence 45778889999999999999988764 56778888886543 334444444444444 32222211111000
Q ss_pred -------------------------------------HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594 86 -------------------------------------VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD 128 (542)
Q Consensus 86 -------------------------------------l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~ 128 (542)
.+.+-.+++ ....+...++.+|.|++.+.....++.+.|+++
T Consensus 215 ~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~-kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~ 293 (708)
T PF05804_consen 215 EIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIR-KQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVS 293 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHH
Confidence 011111122 223344566778999998775555589999999
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594 129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC 208 (542)
Q Consensus 129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 208 (542)
.|+++|++++.++...++.+|.+++- ..+++..+.+.|+++.|.+++++++..++..++++|.||+. +++.+..++..
T Consensus 294 ~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~ 371 (708)
T PF05804_consen 294 LLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSL 371 (708)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHC
Confidence 99999999999999999999999997 45679999999999999999999999999999999999999 78899999999
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHH
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLAN 286 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~ 286 (542)
|++|.|+.++.++ ..+..++.+|.+++.++ +.+..+...+.+| ++.++... ++.+...++..+.|++.+ +.+++
T Consensus 372 GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaq 447 (708)
T PF05804_consen 372 GLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQ 447 (708)
T ss_pred CCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHH
Confidence 9999999999854 56677999999999976 5888888889999 98876654 777888889999999954 55667
Q ss_pred HHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594 287 LVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS 366 (542)
Q Consensus 287 ~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 366 (542)
.+.+.++++.|+......... ..+..+.|++.+++.....+. +.+..|+.++..+.+++...+++.+|+|+...+
T Consensus 448 lm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ 522 (708)
T PF05804_consen 448 LMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPD 522 (708)
T ss_pred HHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC
Confidence 788889999999876554432 234688999988755554444 588888899988777899999999999997766
Q ss_pred hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh---------hCCCchhhHHhhcC-CCCHHHHHHHHHHH
Q psy12594 367 VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP---------KCENPKELEQMLLG-NVSEELLASILCAF 436 (542)
Q Consensus 367 ~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~---------~~~~i~~L~~lL~~-~~~~~v~~~~l~~l 436 (542)
....+.+.+.+++|.+.+.|..+...+++..+++..++.++. +.+.++.|+.+|+. ..|.+++..++.++
T Consensus 523 ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f 602 (708)
T PF05804_consen 523 LDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVF 602 (708)
T ss_pred cCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 666666667899999999999887778899999999998852 45779999999983 44779999999999
Q ss_pred HhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHHH----HHHHHhccCccchhcccC---ccchHHHHHHHhhcCC
Q psy12594 437 AKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAP----HLKTINACFPNEVIHFVS---PHYLEDLINRLDQFNP 504 (542)
Q Consensus 437 ~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~~----a~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 504 (542)
++++.+.+.....+.+.+.+..+.++. .|.++++ +..+|..+-.++-.+.-. .-++..+++.++..+.
T Consensus 603 ~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~ 679 (708)
T PF05804_consen 603 YQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQL 679 (708)
T ss_pred HHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence 999998665444445688888888887 7888875 788887775555333221 2345667777765443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=8.5e-25 Score=224.19 Aligned_cols=372 Identities=16% Similarity=0.177 Sum_probs=315.0
Q ss_pred HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHH
Q psy12594 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH 99 (542)
Q Consensus 20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~ 99 (542)
+...|.|++.++.+...+++.|+++.|+++|++++.++...++..|.+|+ ...+++..|.+.|+++.|++++.+++..
T Consensus 269 ~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS--i~~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 269 AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS--IFKENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 35679999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC
Q psy12594 100 YKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178 (542)
Q Consensus 100 ~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 178 (542)
++..++.+|.|++.+. +.+. ++..|++|.|+.+|.++ ..+..++.+|.+++. +++.+..+...+++|.+++++-+
T Consensus 347 l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~ 422 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLE 422 (708)
T ss_pred HHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHh
Confidence 9999999999999766 5555 99999999999999754 455678899999998 55678888889999999997655
Q ss_pred -CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HH
Q psy12594 179 -PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AV 256 (542)
Q Consensus 179 -~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~ 256 (542)
+++.+...+++.+.|++. ++.+.+.+.+.++++.|++........+ ....+.|++.+++..+..+. +.+. |+
T Consensus 423 ~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~ 496 (708)
T PF05804_consen 423 NSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLA 496 (708)
T ss_pred CCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHH
Confidence 457778888999999999 6778888888899999998876543332 44689999999866666554 4566 88
Q ss_pred HhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594 257 EHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSEQIAEQIIEL 333 (542)
Q Consensus 257 ~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 333 (542)
..+..+ +++....++++|+||...+.++.+.+.+.+.+|.|...|..+ ++++...++..+|.++. ++.....+.+.
T Consensus 497 ~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~s 575 (708)
T PF05804_consen 497 KIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKS 575 (708)
T ss_pred HHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhC
Confidence 888776 789999999999999988778888777889999999999765 34588889999998874 56777888899
Q ss_pred CchHHHHHhhcCCC-hhhHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 334 QGVGSLQTILQCPH-KEQLQVAAAWTLGQIGKHSVDNVTALC-EENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 334 ~~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
|.++.|+.++.... ++++..+.++++.++..+.+ .+..++ +.+++..|++++.+. +.++|+.|-.+|--+.
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~--N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDK--NAEIRKVCDNALDIIA 648 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 99999999998755 37888899999999987754 555555 578999999999987 5689998888775544
No 11
>KOG1048|consensus
Probab=99.90 E-value=4.4e-22 Score=199.17 Aligned_cols=373 Identities=18% Similarity=0.200 Sum_probs=297.1
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH--HHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE--LAE 203 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~--~~~ 203 (542)
-++..+.+|.+.++.++..|+..+..++..+.+.+..+-+.|+|+.|+.++.+...+++.+|+++|.||..+... +.-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 467788999999999999999999999999999999999999999999999999999999999999999987655 777
Q ss_pred HhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--------------ChhHH
Q psy12594 204 SASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--------------HGLVQ 267 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--------------~~~v~ 267 (542)
.+.+.++++.++.+++. .|.++++.+..+||||+..+. +...++. ..++ |...+-.+ +.++.
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 88899999999999996 699999999999999998853 4444443 3344 44433211 36788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhc------CCccchHHHHHHHhHhhcCCh----------------
Q psy12594 268 KNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDC------NGGYNSLPAIMALGYMSAQSE---------------- 324 (542)
Q Consensus 268 ~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~---------------- 324 (542)
.++++||+|++....+..+.+.+. |.|+.|+.++++ .+..-.++++.++.|++..-.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 999999999998887777777754 789999998874 355577888999999872111
Q ss_pred -------------------------------------HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh
Q psy12594 325 -------------------------------------QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV 367 (542)
Q Consensus 325 -------------------------------------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 367 (542)
.....++...++.....++....+..+.++++.+|.|++++..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 1112244445677767777766667899999999999998854
Q ss_pred H----HHHHH-HHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh--------CCCchhhHHhhcCC-----CCHHHH
Q psy12594 368 D----NVTAL-CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK--------CENPKELEQMLLGN-----VSEELL 429 (542)
Q Consensus 368 ~----~~~~l-~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~--------~~~i~~L~~lL~~~-----~~~~v~ 429 (542)
. .+..+ ....+++.++++|..++ ++|.+.++.+|.|+..+ ...++.|++.|.+. .+++++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~--~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv 629 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDD--SDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTV 629 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCC--chHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHH
Confidence 3 33444 46789999999999884 58999999999999643 24689999999842 246999
Q ss_pred HHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC----CCCcHHHHHHHHhccCccchhcccCccchHHHHHHHhhcCCC
Q psy12594 430 ASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE----PTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQ 505 (542)
Q Consensus 430 ~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 505 (542)
..++..|.+++++...+.+.+.+.+|+++|..|. +.+.++.|...+..+|.....+ ..|.+.-+++-++|.+.
T Consensus 630 ~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh---~~~kk~g~~q~~F~~~~ 706 (717)
T KOG1048|consen 630 RAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH---FKLKKKGFKQQDFYDAL 706 (717)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh---hhHhhhhhHHHHHHhHH
Confidence 9999999999999999999999999999999997 2334555788888888754444 56777888888888554
No 12
>KOG1048|consensus
Probab=99.85 E-value=5.5e-19 Score=177.18 Aligned_cols=358 Identities=16% Similarity=0.138 Sum_probs=285.4
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh--h
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER--C 118 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--~ 118 (542)
-+|-.+.+|.+.++.+|..|+..+..++ .. .+.+..+...|+++.|+.+|.+.+.+++..|+.+|.||...... .
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlc--fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLC--FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHH--hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 3566778888999999999999999999 65 78888999999999999999999999999999999999876544 5
Q ss_pred hh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC--------------CHh
Q psy12594 119 AG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP--------------QLS 182 (542)
Q Consensus 119 ~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--------------~~~ 182 (542)
.. +.+.++++.++++|.. .|.++++....+|+||++. +.++..++... +..|..-+-.+ +..
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccce
Confidence 55 8899999999999986 6899999999999999984 66666666554 55555544211 256
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCh--------------
Q psy12594 183 LKHAAAFALDGIVKHSPELAESASD-CDVIPLLIKALN------NDEVNVKADAFLCLADIAKDSP-------------- 241 (542)
Q Consensus 183 ~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~-------------- 241 (542)
+...+.+||+|++..+.+.++.+.+ .|.|..|+..++ ..|....++|+..+.|++..-.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 7889999999999988888888775 577899888876 3467788999999999974321
Q ss_pred ------------------hhHH---------------------HHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcC
Q psy12594 242 ------------------SLAS---------------------TIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 242 ------------------~~~~---------------------~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~ 280 (542)
..++ ......++. -+.+|... +..+.+.++++|-|++..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 0000 011223444 34555544 788999999999999877
Q ss_pred ChH----HHHHH-HhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-----hh
Q psy12594 281 NLR----LANLV-VLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-----EQ 350 (542)
Q Consensus 281 ~~~----~~~~~-~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~~ 350 (542)
... ....+ ....+.+.|+++|+.+++.+...++.+|.|++.+.. .+.++...+++-|++.|..+.. ++
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~sed 627 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSED 627 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchHH
Confidence 532 23333 577899999999999999999999999999987633 2345557899999999987654 67
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594 351 LQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL 406 (542)
Q Consensus 351 v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl 406 (542)
+...+|.+|.|+...+....+.+.+.+.++.|+.+.++.. ++.+-+.|...|-.|
T Consensus 628 tv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~-S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 628 TVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQH-SPKEFKAASSVLDVL 682 (717)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccC-CHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999854 567777777777666
No 13
>KOG2122|consensus
Probab=99.79 E-value=6e-17 Score=169.24 Aligned_cols=363 Identities=14% Similarity=0.126 Sum_probs=272.1
Q ss_pred HHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC---ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc
Q psy12594 18 LCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK---VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT 94 (542)
Q Consensus 18 ~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~---~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~ 94 (542)
....+.+.+++.+++.+..++..|++|+|+++|... +.+.+..|-.+|.+|.... ++-+..-.+. .++.+|
T Consensus 212 ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~----kvL~lL- 285 (2195)
T KOG2122|consen 212 EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREK----KVLHLL- 285 (2195)
T ss_pred HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHH----HHHHHH-
Confidence 345688999999999999999999999999999643 4578888999999999322 2222221221 223333
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q psy12594 95 KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ 174 (542)
Q Consensus 95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 174 (542)
.+++.++-.+-.-+-.+.+ ......+..-...|+.+|..++. ++++++.+-+.|++..+-.
T Consensus 286 ---eQIraYC~~~~~~lqar~~---------------~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIae 346 (2195)
T KOG2122|consen 286 ---EQIRAYCETCWTWLQARGP---------------AIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAE 346 (2195)
T ss_pred ---HHHHHHHHHHHHHHHhcCC---------------CCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHH
Confidence 2344444333333322221 00111121222256666777766 6788999999999988888
Q ss_pred hccCC------------CHhHHHHHHHHHHHHhcCCHHHHHH-hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-
Q psy12594 175 ILASP------------QLSLKHAAAFALDGIVKHSPELAES-ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS- 240 (542)
Q Consensus 175 ll~~~------------~~~~~~~a~~~L~nl~~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~- 240 (542)
|+... ...+|+++..+|.||+.++..++.. ....|++..++..|.+...++....+.+|.||+=..
T Consensus 347 Ll~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD 426 (2195)
T KOG2122|consen 347 LLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRAD 426 (2195)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccc
Confidence 77431 2579999999999999977655443 346789999999999888899999999999998543
Q ss_pred hhhHHHHHhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHh-cCCHHHHHHhhhcCCcc----chHHHH
Q psy12594 241 PSLASTIADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHNLRLANLVVL-AGGLDGLLRLIDCNGGY----NSLPAI 313 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~~~----~~~~a~ 313 (542)
...++.+.+.|-+. |+.+.-. ..+.....++.+||||+.|..++...+.. .|++..||.+|....+. +...|-
T Consensus 427 ~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaG 506 (2195)
T KOG2122|consen 427 SNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAG 506 (2195)
T ss_pred ccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCc
Confidence 34556666677777 7766544 47788899999999999998776665653 58899999999876443 677777
Q ss_pred HHHhHhh---cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCC
Q psy12594 314 MALGYMS---AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTC 390 (542)
Q Consensus 314 ~~L~~l~---~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 390 (542)
.+|.|.+ ..++.+++.+.+++.+..|++.|++++ -.+..++|.+|+||.+.+++.++.+++.|+++.|.+++.+.
T Consensus 507 GILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK- 584 (2195)
T KOG2122|consen 507 GILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK- 584 (2195)
T ss_pred cHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-
Confidence 7887765 467788899999999999999999965 48889999999999999999999999999999999999987
Q ss_pred CChHHHHHHHHHHHHHHh
Q psy12594 391 VSDNLKSKCKNALNILIP 408 (542)
Q Consensus 391 ~~~~v~~~a~~aL~nl~~ 408 (542)
+..+-..++.+|.|++.
T Consensus 585 -hkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 585 -HKMIAMGSAAALRNLLN 601 (2195)
T ss_pred -hhhhhhhHHHHHHHHhc
Confidence 45888999999999963
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.78 E-value=5.7e-15 Score=150.79 Aligned_cols=401 Identities=20% Similarity=0.210 Sum_probs=293.8
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594 88 LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG 167 (542)
Q Consensus 88 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g 167 (542)
.++.+|...+.+....++.+|..+........ ...+..+.|...|.++++.+|..+++.|.++..++....+.+.+.+
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 37788888788888888889998775432111 1456788999999999999999999999999988888888888999
Q ss_pred ChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594 168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI 247 (542)
Q Consensus 168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 247 (542)
+++.++.++.+++.++...|+.+|.+++.+ +.....+++.+.++.|..++...+..+|..+..++.+++..+++....+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999995 4455678788889999999998888999999999999999999899999
Q ss_pred HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc-----chHH-HHHHHhHhh
Q psy12594 248 ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY-----NSLP-AIMALGYMS 320 (542)
Q Consensus 248 ~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~-----~~~~-a~~~L~~l~ 320 (542)
.+.|+++ ++..+.++|.-++.+++.+|..|+. .+...+.+.+.|+++.|..++.+...+ +... .+...++++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 9999999 9999999999999999999999998 777788899999999999999775332 2333 336777887
Q ss_pred cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHH-HHc-CChHHH----HHHHhcCCCChH
Q psy12594 321 AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL-CEE-NVLSTL----LSKITQTCVSDN 394 (542)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~-~~l~~L----~~ll~~~~~~~~ 394 (542)
...+....... ..++..+.+++.+ .+...+..|.-++|.++. +.+-...+ ... +.++.. .....++ ..+
T Consensus 278 ~~~~~~v~~~~-p~~~~~l~~~~~s-~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~--~~~ 352 (503)
T PF10508_consen 278 RVSPQEVLELY-PAFLERLFSMLES-QDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSG--STE 352 (503)
T ss_pred hcChHHHHHHH-HHHHHHHHHHhCC-CChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCC--chH
Confidence 75443332211 2456666677776 456888899999999964 45556666 333 344444 4444444 458
Q ss_pred HHHHHHHHHHHHHhhCC---------------------Cch-hhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHH
Q psy12594 395 LKSKCKNALNILIPKCE---------------------NPK-ELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVT 452 (542)
Q Consensus 395 v~~~a~~aL~nl~~~~~---------------------~i~-~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~ 452 (542)
+|..+..+|.++....+ ... .+..+++ ..=++++..++..+..+....--.+.....
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~ 431 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQPWGQREICSS 431 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcCHHHHHHHHhC
Confidence 99999999999952211 112 4555555 344789999999998887654333333334
Q ss_pred hcchHHhhhcC--CCCcHHH----HHHHHhccCccchhcccCccchHHHHHHHhhc
Q psy12594 453 SHCLRKVQEIE--PTPEIAP----HLKTINACFPNEVIHFVSPHYLEDLINRLDQF 502 (542)
Q Consensus 453 ~g~~~~l~~l~--~~~~~~~----a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 502 (542)
.|.++.+.+=. ++++.++ .++.|.+... ...... ....+++++.+|
T Consensus 432 ~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~-~~~~~~---~~~~~~~kL~~y 483 (503)
T PF10508_consen 432 PGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST-NASSVF---DDPEYLGKLQEY 483 (503)
T ss_pred ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc-chhhcC---CCHHHHHHHHHH
Confidence 56666665544 5555553 3344433322 111211 123455577777
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.77 E-value=1.4e-14 Score=147.98 Aligned_cols=354 Identities=18% Similarity=0.211 Sum_probs=273.1
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-Hh
Q psy12594 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LI 122 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~ 122 (542)
+.+...+.+.+.+....++.+|.++. ........ ..+..+.+...|.++++.+|..++..+.++..++..... +.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l--~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLL--SALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHH--hccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 33777788888888888889999999 44222121 455778889999999999999999999999988877666 78
Q ss_pred hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA 202 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~ 202 (542)
+.++++.++.++.+++..+...|+.+|.+++...+. .+.+.+.+.++.|..++..++..+|..+..++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 899999999999999999999999999999986555 4667788889999999998788899999999999999999999
Q ss_pred HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--Ch---h-HHHHHHHHHH
Q psy12594 203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HG---L-VQKNAATLLR 275 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~---~-v~~~a~~~L~ 275 (542)
..+.+.|+++.++..+.+.|.-++..++.+|..|+.. +...+.+.+.|+++ |..++.+. |+ . ..-.....+.
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 9999999999999999998889999999999999995 46788889999999 99999877 33 1 1223336667
Q ss_pred HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH-Hhh-----CchHHHHHhhcCCChh
Q psy12594 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI-IEL-----QGVGSLQTILQCPHKE 349 (542)
Q Consensus 276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~-----~~l~~L~~ll~~~~~~ 349 (542)
+++...|...... -...+..+.+++.+.++..+..|+.++|.++... +....+ ... ..+..+.....+++ .
T Consensus 275 ~la~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~-~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGS-T 351 (503)
T ss_pred HHHhcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCc-h
Confidence 7776544433211 1345567777888899999999999999998554 444444 332 23455555555544 4
Q ss_pred hHHHHHHHHHHHhhcCChH----H----HHHHH---HcCChH-HHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 350 QLQVAAAWTLGQIGKHSVD----N----VTALC---EENVLS-TLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 350 ~v~~~a~~~L~~l~~~~~~----~----~~~l~---~~~~l~-~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
++|..++.+++++....++ . .+... ..+-.. .++.+++.+ -+++|..+...|..+..
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP--F~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP--FPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chHHHHHHHHHHHHHhc
Confidence 8999999999999543221 1 12222 224444 778888776 46999999888888854
No 16
>KOG4199|consensus
Probab=99.76 E-value=2e-15 Score=136.28 Aligned_cols=318 Identities=18% Similarity=0.208 Sum_probs=255.8
Q ss_pred HhCCchHHHHhhhc---CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHh
Q psy12594 38 KDLNVVDLIVPLLA---DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVA 112 (542)
Q Consensus 38 ~~~g~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~ 112 (542)
...|..+.++.++. +.+..+...++.+|..+. .. ...+.+..++..++++|.. ++.++....+.++..-|
T Consensus 101 ~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt--~~---qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac 175 (461)
T KOG4199|consen 101 GKNGAHDALITLLELAESPNESVLKKSLEAINSLT--HK---QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKAC 175 (461)
T ss_pred ccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh--cC---CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 35677777766654 556778888888888888 44 2234567788999999874 66788888888999988
Q ss_pred cCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCC---------hHHHHHHHHcCChHHHHHhccCC-C
Q psy12594 113 QQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDN---------KHFAERIVQCGALPPLVQILASP-Q 180 (542)
Q Consensus 113 ~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~L~~ll~~~-~ 180 (542)
-..+..++ +++.++++.+.+.|.... ..+.....|++..+..++ ..+.+.+.+.|++..|++.++.. +
T Consensus 176 ~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d 255 (461)
T KOG4199|consen 176 IMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID 255 (461)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC
Confidence 77777777 999999999997776543 456677889999887543 35678889999999999999864 5
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CH---HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-H
Q psy12594 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND-EV---NVKADAFLCLADIAKDSPSLASTIADGATTL-A 255 (542)
Q Consensus 181 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L 255 (542)
|.+....+.+|..|+- ..+.+..+.+.|++..|+.++.+. +. ++...++..|..|+..+ ..+..+++.|+.+ +
T Consensus 256 p~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 256 PDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKI 333 (461)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHH
Confidence 7888888999999998 678999999999999999999974 33 35578889999999887 4899999999999 8
Q ss_pred HHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc--cchHHHHHHHhHhhcCChHHHHHHH
Q psy12594 256 VEHLTYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG--YNSLPAIMALGYMSAQSEQIAEQII 331 (542)
Q Consensus 256 ~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~ 331 (542)
+.++... +|.+...++.++..|+-..|+....+++.|+-...++.++.... .++.+|++.|.|++..+.++...++
T Consensus 334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l 413 (461)
T KOG4199|consen 334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL 413 (461)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH
Confidence 8776543 89999999999999999999999999999999999999887543 4899999999999999888888887
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK 364 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 364 (542)
. .+++.|+..-+..+ +.....|--+|..+..
T Consensus 414 ~-~GiE~Li~~A~~~h-~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 414 A-NGIEKLIRTAKANH-ETCEAAAKAALRDLGC 444 (461)
T ss_pred h-ccHHHHHHHHHhcC-ccHHHHHHHHHHhcCc
Confidence 7 55666666666543 4677777777777743
No 17
>PRK09687 putative lyase; Provisional
Probab=99.75 E-value=3.7e-16 Score=146.36 Aligned_cols=256 Identities=19% Similarity=0.128 Sum_probs=204.9
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
.--++.|..+|.+++..+|..|+.+|..+. ....++.+..++.++++.+|..++++|+.+......
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRG------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcC------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 345678889999999999999999999888 455677888888999999999999999998643211
Q ss_pred hHhhcCChHHHHhh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 120 GLIEDKDLDSIISS-LHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 120 ~~~~~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
....++.|..+ ++++++.||..|+.+|+++....... ...+++.+...+.++++.+|..++++|+.+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND-- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence 11356777777 67888999999999999986433211 11235667788888899999999999987754
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
...++.|+.++.++++.+|..|+.+|+.+..+++ .+++ |+..|.+.+++|+..|+++|..+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3467999999999999999999999999944443 5677 99999999999999999999886
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 357 (542)
-. ..++|.|+..|.+++ ++..++.+||++... ..++.|..++...++..++..|.+
T Consensus 220 ~~-----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred CC-----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHHH
Confidence 42 367889999998865 677899999988542 578899999985567889998988
Q ss_pred HHHH
Q psy12594 358 TLGQ 361 (542)
Q Consensus 358 ~L~~ 361 (542)
+|..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8753
No 18
>KOG4199|consensus
Probab=99.75 E-value=3.7e-15 Score=134.54 Aligned_cols=318 Identities=14% Similarity=0.140 Sum_probs=251.6
Q ss_pred hcCcHHHHHHhhc---cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcC--CCHHHHHHHHHHHHHhhcCC
Q psy12594 82 ERNLVALVLKDLT---KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHD--FDPDTRANAALALGGLAKDN 156 (542)
Q Consensus 82 ~~~~l~~Lv~~L~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~ 156 (542)
..|..+.++..+. +++..+-..++.+|..+....|+ +.+..++..++.+|.. ++.++......++..-+-.+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd---l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD---LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc---hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 4456666555433 46677777888888777654432 5667788999999864 35777777888888888888
Q ss_pred hHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCC---------HHHHHHhhhCCChHHHHHhhcCC-CHHH
Q psy12594 157 KHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHS---------PELAESASDCDVIPLLIKALNND-EVNV 225 (542)
Q Consensus 157 ~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~---------~~~~~~~~~~~~i~~L~~ll~~~-~~~~ 225 (542)
+.+++.+++.++.+.+.+.+... ...+.+...|+++-|..++ ....+.+...|++..|+..++.. +|++
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~ 258 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS 258 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence 89999999999999999777654 4568889999999988644 34456777788899999999854 7889
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-Chh---HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh
Q psy12594 226 KADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGL---VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL 300 (542)
Q Consensus 226 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~---v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l 300 (542)
....+.+|..|+-.+ ++...+.+.|++. |++++.+. +.. ..+.++..|+.|+.. ......+++.|+.+.++.+
T Consensus 259 L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~ii~l 336 (461)
T KOG4199|consen 259 LVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKIITL 336 (461)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHHHHH
Confidence 999999999999887 4777889999999 99999986 333 446788888899854 4445568889999999988
Q ss_pred hhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594 301 IDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTALCEEN 377 (542)
Q Consensus 301 L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 377 (542)
+.. .+|.+...++.++..|+-..|+....+++.|+-...++.++..+. ..++.+|||.+.|++.++.+++..++..
T Consensus 337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~- 415 (461)
T KOG4199|consen 337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN- 415 (461)
T ss_pred HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-
Confidence 643 567788889999999999999999999999999999998887664 6799999999999999988887777776
Q ss_pred ChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 378 VLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 378 ~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
+++.|+..-+.. +++.+..|..||..|-
T Consensus 416 GiE~Li~~A~~~--h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 416 GIEKLIRTAKAN--HETCEAAAKAALRDLG 443 (461)
T ss_pred cHHHHHHHHHhc--CccHHHHHHHHHHhcC
Confidence 456666666655 3578888888888763
No 19
>KOG2171|consensus
Probab=99.74 E-value=8.6e-15 Score=152.49 Aligned_cols=349 Identities=15% Similarity=0.188 Sum_probs=249.7
Q ss_pred cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC---hHH
Q psy12594 83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN---KHF 159 (542)
Q Consensus 83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~~~ 159 (542)
.++++.|++..+++++..|..|+.+|..+...-.....-.-..+.+.+.+.+.+++..+|..|++++..++... ...
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 34566666777889999999999999998643222111011124556667777776559999999999988544 333
Q ss_pred HHHHHHcCChHHHHHh----ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHH
Q psy12594 160 AERIVQCGALPPLVQI----LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCL 233 (542)
Q Consensus 160 ~~~i~~~g~i~~L~~l----l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L 233 (542)
++.+.. .+|.++.. ++..+...-..+..+|..++...|......+ ..++..-..+..+. +..+|..|+..|
T Consensus 197 ~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 197 VDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344433 35555544 4556666778888899999987777666655 45666666666655 688999999999
Q ss_pred HHHhcCChhhHHHH--HhhchHH-HHHhhcCC--C--------------hhHHHHHHHHHHHHhcCChHHHHHHHhcCCH
Q psy12594 234 ADIAKDSPSLASTI--ADGATTL-AVEHLTYP--H--------------GLVQKNAATLLRDMCKHNLRLANLVVLAGGL 294 (542)
Q Consensus 234 ~~l~~~~~~~~~~~--~~~~~i~-L~~lL~~~--~--------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i 294 (542)
..+++..+...+.. ....+++ ++.++.+. | +.....|..+|-.++.+-+... +-.-.+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~ 350 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLF 350 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHH
Confidence 99998855333221 2244555 55555322 1 2256677788888877643221 114567
Q ss_pred HHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 295 DGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALC 374 (542)
Q Consensus 295 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 374 (542)
+.+-.++.++++..|.+|+.+|+.++.++.+.....+. .+++.++..+.+ +++.||.+|+.+++.+++.-....+.-.
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 78889999999999999999999999999988776554 788888999988 4579999999999999877666666666
Q ss_pred HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC------CchhhHH-----hhcCCCCHHHHHHHHHHHHhhCC
Q psy12594 375 EENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE------NPKELEQ-----MLLGNVSEELLASILCAFAKILP 441 (542)
Q Consensus 375 ~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~------~i~~L~~-----lL~~~~~~~v~~~~l~~l~~ll~ 441 (542)
..-+++.|+..+.+.. ++.|+..|+.++-|+...|. +++.|+. |++ ++.+.++..+..+|..+..
T Consensus 429 ~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~-~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQ-SSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHhccHHHHHHhcccC-chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Confidence 7778889999999875 67899999999999987753 3444444 445 7777888888888877644
No 20
>KOG4500|consensus
Probab=99.73 E-value=4.6e-15 Score=138.11 Aligned_cols=383 Identities=14% Similarity=0.106 Sum_probs=277.8
Q ss_pred HHHHHHHHHHhcCCCCchHHH----HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHH
Q psy12594 17 RLCFVQTMSAFADKPSTIHFL----KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLK 91 (542)
Q Consensus 17 r~~~~~~l~~l~~~~~~~~~l----~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~ 91 (542)
+.-...++++.+.++.-|..| ++++.+..|.....|++.++..++.++|++++ .+ .+.|..+.+.|+-+.+++
T Consensus 59 ~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiC--ydn~E~R~a~~~lgGaqivid 136 (604)
T KOG4500|consen 59 YLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNIC--YDNNENRAAFFNLGGAQIVID 136 (604)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhh--ccCchhHHHHHhcCCceehHh
Confidence 334456678888777666655 45677888888888999999999999999999 76 899999999999888888
Q ss_pred hhcc----CC---HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC--CC-----------------------
Q psy12594 92 DLTK----QN---KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD--FD----------------------- 138 (542)
Q Consensus 92 ~L~~----~~---~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~--~~----------------------- 138 (542)
.|+. ++ .+.-.-++..|.|..-++.+.+. +.+.|+++.|...+.- .+
T Consensus 137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~ 216 (604)
T KOG4500|consen 137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLY 216 (604)
T ss_pred hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhh
Confidence 7763 22 35566677789998888888888 9999999977655421 11
Q ss_pred ---------------------HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CC-------HhHHHHHHH
Q psy12594 139 ---------------------PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQ-------LSLKHAAAF 189 (542)
Q Consensus 139 ---------------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~-------~~~~~~a~~ 189 (542)
++.++.....|...+. ++..+-.+.+.|.+..++.+++. ++ ..+-..++.
T Consensus 217 ~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~e 295 (604)
T KOG4500|consen 217 PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAE 295 (604)
T ss_pred hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhh
Confidence 1122222223333322 33444455666777777777665 11 122223333
Q ss_pred HHHHHhcCCHHHHHHhhhCC-ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC-----C
Q psy12594 190 ALDGIVKHSPELAESASDCD-VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY-----P 262 (542)
Q Consensus 190 ~L~nl~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~-----~ 262 (542)
...-|..+ .+....+...+ +++.+..++.+.|.+++..+.-+++|+++.+. ....+++.+.+. |++++.. +
T Consensus 296 l~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdg 373 (604)
T KOG4500|consen 296 LDVLLLTG-DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDG 373 (604)
T ss_pred HhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33334443 33444555444 78999999999999999999999999999986 555677889999 9999865 2
Q ss_pred ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh-hCchHHHHH
Q psy12594 263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE-LQGVGSLQT 341 (542)
Q Consensus 263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ 341 (542)
+.+++..++.+|+|+....+.... +...|+.+.++..++...|.+...-+.++.-+..+-+.....+.+ ...+..|++
T Consensus 374 nV~~qhA~lsALRnl~IPv~nka~-~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~ 452 (604)
T KOG4500|consen 374 NVERQHACLSALRNLMIPVSNKAH-FAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD 452 (604)
T ss_pred cchhHHHHHHHHHhccccCCchhh-ccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence 678899999999999976666555 667899999999999999999888888888776665544444433 356777787
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 342 ILQCPHKEQLQVAAAWTLGQIGKH--SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 342 ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
.-+++.-..+--+..+.+.-+..+ ..+....+-.+|++..++..+... +...+.+|..||+-+.
T Consensus 453 Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~--hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 453 WSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN--HINMQNEALVALLSTE 518 (604)
T ss_pred hhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh--hHHHhHHHHHHHHHHH
Confidence 777754345777788888888777 345667777899999999999876 4689999999998774
No 21
>KOG4500|consensus
Probab=99.71 E-value=6.3e-15 Score=137.19 Aligned_cols=404 Identities=13% Similarity=0.089 Sum_probs=291.9
Q ss_pred CCChHHHHHHHHHHHHhHccCChHHHHHHH----hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCC
Q psy12594 52 DKVPSIQHAALATLGKLMCAKHVDIRQEVL----ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKD 126 (542)
Q Consensus 52 s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~----~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~ 126 (542)
..+..++..+..++...+ ..+.-+..+. +.+.+..|.+..++++.++..+++++|+|+|..+.+.+. +.+.|+
T Consensus 53 ~~~~tv~~~qssC~A~~s--k~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRS--KNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eccchhhhhhHHHHHHHh--hhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 344566666777777777 6654444443 456677777777788899999999999999999988888 889999
Q ss_pred hHHHHhhhcCC----C---HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHHHHHHHHhcC
Q psy12594 127 LDSIISSLHDF----D---PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 127 v~~Lv~lL~~~----~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~ 197 (542)
-..+++.|+.. + .+...-+...|.|...++.+.+..+.+.|+++.|...+.- .+....+.......|+.+-
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~ 210 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF 210 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH
Confidence 77777777532 2 3566667788999999999999999999999998887654 3566667777777777653
Q ss_pred CHH-HHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-C-------hhH
Q psy12594 198 SPE-LAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-H-------GLV 266 (542)
Q Consensus 198 ~~~-~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~-------~~v 266 (542)
-.+ ......+......+.+++... .+++++.+...|...+.++. ..-.+.+.|.++ +++++..- + -..
T Consensus 211 ~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l 289 (604)
T KOG4500|consen 211 VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL 289 (604)
T ss_pred HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence 222 233445667777888888744 77889999999999998874 556677788888 98888762 1 223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594 267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 267 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 346 (542)
...++....-+..+++..........+++.++.++.+.+......+..+|||+++.+. .+..+++.+.+..|++++..+
T Consensus 290 ~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~ 368 (604)
T KOG4500|consen 290 FKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQE 368 (604)
T ss_pred HHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666655544344489999999999999999999999999988754 556678889999999998764
Q ss_pred Ch----hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-----------CC
Q psy12594 347 HK----EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-----------CE 411 (542)
Q Consensus 347 ~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-----------~~ 411 (542)
++ ...+.+++.+|.|+. -...++..++..|+.+.++..++...| .+...-..++.-+... .+
T Consensus 369 ~~vdgnV~~qhA~lsALRnl~-IPv~nka~~~~aGvteaIL~~lk~~~p--pv~fkllgTlrM~~d~qe~~a~eL~kn~~ 445 (604)
T KOG4500|consen 369 KDVDGNVERQHACLSALRNLM-IPVSNKAHFAPAGVTEAILLQLKLASP--PVTFKLLGTLRMIRDSQEYIACELAKNPE 445 (604)
T ss_pred cCCCccchhHHHHHHHHHhcc-ccCCchhhccccchHHHHHHHHHhcCC--cchHHHHHHHHHHHhchHHHHHHHhcCHH
Confidence 32 467889999999995 445567888999999999999998854 5555444444433321 11
Q ss_pred CchhhHHhhcCCCCH-HHHHHHHHHHHhhCCC--ChhhhhHHHHhcchHHhhhcC
Q psy12594 412 NPKELEQMLLGNVSE-ELLASILCAFAKILPC--DPVARRSFVTSHCLRKVQEIE 463 (542)
Q Consensus 412 ~i~~L~~lL~~~~~~-~v~~~~l~~l~~ll~~--~~~~~~~~~~~g~~~~l~~l~ 463 (542)
.+..|++--+ ++|. .+.-+....+.-+++. ..+....+.++||++.+..+.
T Consensus 446 l~ekLv~Wsk-s~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~ 499 (604)
T KOG4500|consen 446 LFEKLVDWSK-SPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMF 499 (604)
T ss_pred HHHHHHHhhh-CCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHH
Confidence 1233333333 4454 3666777777666665 344445667899998888775
No 22
>PRK09687 putative lyase; Provisional
Probab=99.71 E-value=1.1e-15 Score=143.29 Aligned_cols=255 Identities=16% Similarity=0.101 Sum_probs=203.3
Q ss_pred CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES 204 (542)
Q Consensus 125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 204 (542)
--++.|...|.+.+..+|..++++|..+.. + .+++.+..+++++++.+|..++++|+.|..... .
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~---------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--Q---------DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--c---------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 467899999999999999999999988753 2 236778889999999999999999999876321 1
Q ss_pred hhhCCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh
Q psy12594 205 ASDCDVIPLLIKA-LNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL 282 (542)
Q Consensus 205 ~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~ 282 (542)
....++.|..+ ++++++.+|..++.+|++++...... ....++ +...+.+++..||..++++|..+..
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 12345777777 67889999999999999997544211 123566 7788888899999999999976542
Q ss_pred HHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHh
Q psy12594 283 RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362 (542)
Q Consensus 283 ~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l 362 (542)
...++.|+.++.++++.++..|+.+||.+...++ .+++.|+..+.+. +..+|..|.++|+.+
T Consensus 158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR 219 (280)
T ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence 3467899999999999999999999999844333 3566788888874 569999999999998
Q ss_pred hcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHh
Q psy12594 363 GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAK 438 (542)
Q Consensus 363 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ 438 (542)
+++. +++.|+..+.++ +++..++.+|+++-.. ..+|.|..+++.+.|+.+...+.++|..
T Consensus 220 --~~~~---------av~~Li~~L~~~----~~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 220 --KDKR---------VLSVLIKELKKG----TVGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred --CChh---------HHHHHHHHHcCC----chHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 3443 789999999975 4888999999998755 5799999999635688999999888764
No 23
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.71 E-value=7.3e-15 Score=160.74 Aligned_cols=277 Identities=18% Similarity=0.168 Sum_probs=221.6
Q ss_pred hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
+...++.|+..|+++++.+|..|+..|..+. ..+.++.|+..|+++++.+|..|+..|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~--- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL--- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc---
Confidence 4567788999999999999999999999987 4557788999999999999999999998885322
Q ss_pred hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
...+.|...|+++++.+|..++.+|..+.... ...|++.|+++++.+|..|+.+|..+..
T Consensus 684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence 12457788888899999999999888875322 3457788999999999999999997632
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
.+.|..++.++++++|..++.+|..+..... ..++ |..+++++++.+|..++.+|..+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2456788999999999999999999866543 2367 88999999999999999999888
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 357 (542)
.... ..++.+...|.++++.+|..|+.+|+.+... ..++.|..+|.++ +..||..|++
T Consensus 803 g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~-~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTDP-HLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCC-CHHHHHHHHH
Confidence 6321 1224577889999999999999999977422 4568889999885 5699999999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy12594 358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNI 405 (542)
Q Consensus 358 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~n 405 (542)
+|+.+ .+++. ..+.|...+.+. +.+||..|..+|..
T Consensus 861 aL~~~-~~~~~---------a~~~L~~al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRW-PGDPA---------ARDALTTALTDS--DADVRAYARRALAH 896 (897)
T ss_pred HHhcc-CCCHH---------HHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence 99997 44444 356777888876 56999999999863
No 24
>KOG1222|consensus
Probab=99.69 E-value=7.4e-14 Score=131.85 Aligned_cols=373 Identities=14% Similarity=0.112 Sum_probs=288.4
Q ss_pred HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHH
Q psy12594 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH 99 (542)
Q Consensus 20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~ 99 (542)
++-.|.|++++...-..++..+++..|++.|..++.+........|.+|+ -..+++..+...|.+..|++++..+.++
T Consensus 283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS--If~eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLS--IFDENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhh--hhccchHHHHhccHHHHHHHhcCCCCHH
Confidence 45678999999999999999999999999999888888888889999999 7788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC
Q psy12594 100 YKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179 (542)
Q Consensus 100 ~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 179 (542)
++...+..+.|++.......+++..|.+|.++.++.++... ..|+..|..++. ++..+..+....+|+.+.+.+-+.
T Consensus 361 L~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 361 LRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred HHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999997775555599999999999999876532 346667777776 455577777788899988876543
Q ss_pred -CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH
Q psy12594 180 -QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE 257 (542)
Q Consensus 180 -~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~ 257 (542)
+.++-......-.|+|. +..+.+.+.+..++..|+..--.....+ ....+.|++.+....+..++. -+. |..
T Consensus 438 ~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~l---LmK~vRniSqHeg~tqn~Fid--yvgdLa~ 511 (791)
T KOG1222|consen 438 TGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLL---LMKVVRNISQHEGATQNMFID--YVGDLAG 511 (791)
T ss_pred CCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchH---HHHHHHHhhhccchHHHHHHH--HHHHHHH
Confidence 45555555545568887 5566777777778888887654332222 345678889887666666664 455 777
Q ss_pred hhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC--ccchHHHHHHHhHhhcCChHHHHHHHhhC
Q psy12594 258 HLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG--GYNSLPAIMALGYMSAQSEQIAEQIIELQ 334 (542)
Q Consensus 258 lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 334 (542)
.++.. ++.....+.+++.||...+.++.+.+.+...+|.+-..|...- ..+....+-.+|..+. +......+..++
T Consensus 512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~ 590 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAK 590 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccc
Confidence 77766 6778889999999999888888888888999999999887743 3366666666776544 355666778889
Q ss_pred chHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 335 GVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTALC-EENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 335 ~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
+++.|+++|+...+ ++......+....+..+ ...++.++ +...-..+++++.+. +.++|+.+-.+|--+.
T Consensus 591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDk--N~eiRkVCDn~LdIia 662 (791)
T KOG1222|consen 591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDK--NAEIRKVCDNALDIIA 662 (791)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcc--cHHHHHHHHHHHHHHH
Confidence 99999999987643 56777788888888766 44455555 456667889999887 5689998888775544
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.66 E-value=2.8e-14 Score=156.18 Aligned_cols=275 Identities=19% Similarity=0.141 Sum_probs=208.5
Q ss_pred cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594 83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162 (542)
Q Consensus 83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (542)
...++.|+..|.++++.+|..|+..|..+.. .++++.|+..|+++++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 4566788888999999999999998888752 2467888999998899999999988888753211
Q ss_pred HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
..+.|...|+++++.+|..++.+|..+...+ ...|+..|.++++.+|..++++|..+-.
T Consensus 685 -----~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~---- 743 (897)
T PRK13800 685 -----PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD---- 743 (897)
T ss_pred -----chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC----
Confidence 1356778888888999999998888875322 2456778889999999999999887521
Q ss_pred hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
.+ |...+.++++.||..++.+|..+....+ ..++.|..+++++++.+|..|+.+|+.+..
T Consensus 744 ----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 744 ----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred ----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 24 6677888899999999999888864322 235677888888898999999999988743
Q ss_pred CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHH
Q psy12594 322 QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKN 401 (542)
Q Consensus 322 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~ 401 (542)
.. .....+...+.+ +++.+|..|+++|+.+. +++ .++.|+.+|.++ +..||..|++
T Consensus 805 ~~----------~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~--~~~---------a~~~L~~~L~D~--~~~VR~~A~~ 860 (897)
T PRK13800 805 PP----------DDVAAATAALRA-SAWQVRQGAARALAGAA--ADV---------AVPALVEALTDP--HLDVRKAAVL 860 (897)
T ss_pred cc----------hhHHHHHHHhcC-CChHHHHHHHHHHHhcc--ccc---------hHHHHHHHhcCC--CHHHHHHHHH
Confidence 21 123456677777 45689999999998873 222 458888999877 4689999999
Q ss_pred HHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHH
Q psy12594 402 ALNILIPKCENPKELEQMLLGNVSEELLASILCAFA 437 (542)
Q Consensus 402 aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~ 437 (542)
+|..+.......+.|...++ +.|.+|+..+..+|.
T Consensus 861 aL~~~~~~~~a~~~L~~al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 861 ALTRWPGDPAARDALTTALT-DSDADVRAYARRALA 895 (897)
T ss_pred HHhccCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 99886322234678888888 889999998888875
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.65 E-value=1.3e-13 Score=144.49 Aligned_cols=410 Identities=17% Similarity=0.180 Sum_probs=292.8
Q ss_pred HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCH
Q psy12594 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNK 98 (542)
Q Consensus 20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~ 98 (542)
..+.++....+.+.. .+.+..++++.+.+...+..+-.++..+. .. ++.... .+..+.+-|.++++
T Consensus 27 l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~--~~~~~~~~l-----~~n~l~kdl~~~n~ 93 (526)
T PF01602_consen 27 LKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYL--HEDPELLIL-----IINSLQKDLNSPNP 93 (526)
T ss_dssp HHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHT--TTSHHHHHH-----HHHHHHHHHCSSSH
T ss_pred HHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hcchhHHHH-----HHHHHHHhhcCCCH
Confidence 344444444444333 66778889999999999999999999998 55 442222 45677778889999
Q ss_pred HHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC
Q psy12594 99 HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178 (542)
Q Consensus 99 ~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 178 (542)
.++..|+.++++++ .++... .+++.+.+++.++++.+|..|+.++..+....|+..+. . .++.+.+++.+
T Consensus 94 ~~~~lAL~~l~~i~--~~~~~~----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d 163 (526)
T PF01602_consen 94 YIRGLALRTLSNIR--TPEMAE----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSD 163 (526)
T ss_dssp HHHHHHHHHHHHH---SHHHHH----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTH
T ss_pred HHHHHHHhhhhhhc--ccchhh----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccC
Confidence 99999999999987 333333 24788899999999999999999999998766553222 2 48899999999
Q ss_pred CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH
Q psy12594 179 PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE 257 (542)
Q Consensus 179 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~ 257 (542)
+++.++..|+.++..+ ..+++....+. ...+..|.+++...++-.+..++.++..++...+..... ..+++ +..
T Consensus 164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~ 238 (526)
T PF01602_consen 164 KDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLN 238 (526)
T ss_dssp SSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHH
T ss_pred CcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHH
Confidence 9999999999999999 33333321222 334466666777889999999999999998876544421 46778 888
Q ss_pred hhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchH
Q psy12594 258 HLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVG 337 (542)
Q Consensus 258 lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 337 (542)
++.+.++.+...++.++..+....+ .-..+++.|..++.+.++.++..++..|..++...+... . ...
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v----~--~~~ 306 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV----F--NQS 306 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH----G--THH
T ss_pred HhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh----h--hhh
Confidence 8988899999999999998886444 124567899999999999999999999999987763222 1 222
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-----C
Q psy12594 338 SLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-----N 412 (542)
Q Consensus 338 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-----~ 412 (542)
..+..+...++..++..++..|..++ ++++... +++.|...+.+.. +.+++.+++.+++.+..+.. .
T Consensus 307 ~~~~~l~~~~d~~Ir~~~l~lL~~l~--~~~n~~~-----Il~eL~~~l~~~~-d~~~~~~~i~~I~~la~~~~~~~~~~ 378 (526)
T PF01602_consen 307 LILFFLLYDDDPSIRKKALDLLYKLA--NESNVKE-----ILDELLKYLSELS-DPDFRRELIKAIGDLAEKFPPDAEWY 378 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHGSSHHHH
T ss_pred hhhheecCCCChhHHHHHHHHHhhcc--cccchhh-----HHHHHHHHHHhcc-chhhhhhHHHHHHHHHhccCchHHHH
Confidence 23445554456799999999999995 3444444 4567777774332 46899999999999976532 3
Q ss_pred chhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCCCcHH-HHHHHHhccCc
Q psy12594 413 PKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIA-PHLKTINACFP 480 (542)
Q Consensus 413 i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~~~~~-~a~~~l~~~~~ 480 (542)
++.+..++. ...+.+...+...+.+++...+..+...... .++.+.++ ..+++. .++++++.|..
T Consensus 379 v~~l~~ll~-~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~-L~~~l~~~-~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 379 VDTLLKLLE-ISGDYVSNEIINVIRDLLSNNPELREKILKK-LIELLEDI-SSPEALAAAIWILGEYGE 444 (526)
T ss_dssp HHHHHHHHH-CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHH-HHHHHTSS-SSHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhhh-hccccccchHHHHHHHHhhcChhhhHHHHHH-HHHHHHHh-hHHHHHHHHHhhhcccCC
Confidence 678888888 7777788888888888877766654443222 12222222 333343 48888888865
No 27
>KOG2122|consensus
Probab=99.63 E-value=2.5e-14 Score=150.14 Aligned_cols=310 Identities=16% Similarity=0.121 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHHHhcCC-CCchHHHHhCCchHHH----------HhhhcCCCh-------HHHH-HHHHHHHHhHccCC
Q psy12594 13 YQRARLCFVQTMSAFADK-PSTIHFLKDLNVVDLI----------VPLLADKVP-------SIQH-AALATLGKLMCAKH 73 (542)
Q Consensus 13 ~~~~r~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L----------~~lL~s~~~-------~v~~-~a~~~L~~l~~~~~ 73 (542)
.+.+|+.+-++|.|+-.. ++....=++..++++| +.++.+.++ .-+. .|+.+|.+++ .+
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S--FD 328 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS--FD 328 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh--cc
Confidence 556788999999999883 3322222222333332 334443222 2233 7888999999 99
Q ss_pred hHHHHHHHhcCcHHHHHHhhcc------------CCHHHHHHHHHHHHHHhcCChhhhh-H-hhcCChHHHHhhhcCCCH
Q psy12594 74 VDIRQEVLERNLVALVLKDLTK------------QNKHYKKTALHMLTCVAQQDERCAG-L-IEDKDLDSIISSLHDFDP 139 (542)
Q Consensus 74 ~~~~~~i~~~~~l~~Lv~~L~~------------~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~g~v~~Lv~lL~~~~~ 139 (542)
++.+..|-+.|+++.+-.++.- .+..+|+++..+|.||..++...+. + -..|+++.+|..|.+...
T Consensus 329 EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe 408 (2195)
T KOG2122|consen 329 EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE 408 (2195)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH
Confidence 9999999999999988886531 2357899999999999988877666 4 466999999999998888
Q ss_pred HHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHH
Q psy12594 140 DTRANAALALGGLAKDNKH-FAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPELAESASD-CDVIPLLIK 216 (542)
Q Consensus 140 ~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~ 216 (542)
++....+.+|.||++.-+. .++.+-+.|-+..|.... +..........+.+|+||+.|..+++..|.. .|++..|+.
T Consensus 409 eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg 488 (2195)
T KOG2122|consen 409 ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVG 488 (2195)
T ss_pred HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHh
Confidence 8888888999999965544 445555668888887764 4445567788999999999998888776653 678999999
Q ss_pred hhcCC----CHHHHHHHHHHHHHHhcC---ChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594 217 ALNND----EVNVKADAFLCLADIAKD---SPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV 288 (542)
Q Consensus 217 ll~~~----~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 288 (542)
+|.-. ...+.+.+-.+|.|++.. .+++++.+..+..+. |+.+|++.+-.+..++|++||||+..+++..+.+
T Consensus 489 ~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~L 568 (2195)
T KOG2122|consen 489 TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQML 568 (2195)
T ss_pred hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHH
Confidence 99733 466889999999888753 346788889999999 9999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh
Q psy12594 289 VLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE 324 (542)
Q Consensus 289 ~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 324 (542)
.+.|+++.|..++++.+..+..-+..+|.||....+
T Consensus 569 wD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 569 WDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999999999987654
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=99.62 E-value=5.6e-12 Score=132.17 Aligned_cols=385 Identities=16% Similarity=0.125 Sum_probs=269.7
Q ss_pred hcCCCCchHHHH--hCCchHHHHhhhcCCChHHHHHHHH-HHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHH
Q psy12594 27 FADKPSTIHFLK--DLNVVDLIVPLLADKVPSIQHAALA-TLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKT 103 (542)
Q Consensus 27 l~~~~~~~~~l~--~~g~i~~L~~lL~s~~~~v~~~a~~-~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~ 103 (542)
+-..+.....|. ..|=+.-|.+.|.+.+...+..|++ .+..++ ...+. ..+++.+++++.+.+..+|+.
T Consensus 16 ~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt--~G~Dv------S~LF~dVvk~~~S~d~elKKL 87 (746)
T PTZ00429 16 LEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMT--MGRDV------SYLFVDVVKLAPSTDLELKKL 87 (746)
T ss_pred hhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCCc------hHHHHHHHHHhCCCCHHHHHH
Confidence 334444555554 3566777888888888777777764 555555 33222 236778888999999999999
Q ss_pred HHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhH
Q psy12594 104 ALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSL 183 (542)
Q Consensus 104 a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~ 183 (542)
....+.+++...++...+ ++..+.+-+++++|.+|..|+++|+++-. +...+.+ ++.+.+.+.+.++.|
T Consensus 88 vYLYL~~ya~~~pelalL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l-----~~~lkk~L~D~~pYV 156 (746)
T PTZ00429 88 VYLYVLSTARLQPEKALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYT-----LEPLRRAVADPDPYV 156 (746)
T ss_pred HHHHHHHHcccChHHHHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHH-----HHHHHHHhcCCCHHH
Confidence 999999998766654331 46788899999999999999999998864 3333332 667888899999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC
Q psy12594 184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP 262 (542)
Q Consensus 184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~ 262 (542)
|..|+.++.++...+++ .+.+.+.++.|..++.+.++.+..+|+.+|..+...++... -.....+. |+..+.+.
T Consensus 157 RKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 157 RKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPEC 231 (746)
T ss_pred HHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcC
Confidence 99999999999886664 23346788999999999999999999999999987765322 23345567 88888888
Q ss_pred ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC-hHHHHHHHhhCchHHHHH
Q psy12594 263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS-EQIAEQIIELQGVGSLQT 341 (542)
Q Consensus 263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ 341 (542)
+++.+...+.+|......+.... ...+..+...|++.++.|...|++++.++.... ++....... .+.+.++.
T Consensus 232 ~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~ 305 (746)
T PTZ00429 232 NEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLT 305 (746)
T ss_pred ChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHH
Confidence 99999988888865433222222 245678888899999999999999999887542 332222221 23455666
Q ss_pred hhcCCChhhHHHHHHHHHHHhhcCChHHHHH-------------------------HHHcCChHHHHHHHhc--CCCChH
Q psy12594 342 ILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA-------------------------LCEENVLSTLLSKITQ--TCVSDN 394 (542)
Q Consensus 342 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------------------------l~~~~~l~~L~~ll~~--~~~~~~ 394 (542)
++.+ +++++..+++.+.-+....|..... +.+..-+..++.-|.. .+.+.+
T Consensus 306 L~ss--~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~e 383 (746)
T PTZ00429 306 LSRR--DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMV 383 (746)
T ss_pred hhCC--CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHH
Confidence 6543 3478888887776665544432211 1222233333333332 122568
Q ss_pred HHHHHHHHHHHHHhhC-----CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594 395 LKSKCKNALNILIPKC-----ENPKELEQMLLGNVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 395 v~~~a~~aL~nl~~~~-----~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
+++++..+++++..+. ..+..|++++. .+.. ++..++.++.++++++|+
T Consensus 384 f~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~-~~~~-~v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 384 FVVEVVRAIASLAIKVDSVAPDCANLLLQIVD-RRPE-LLPQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhc-CCch-hHHHHHHHHHHHHHHCcc
Confidence 9999999999997653 23677888887 5544 455788899999888775
No 29
>KOG1222|consensus
Probab=99.62 E-value=2.1e-12 Score=122.22 Aligned_cols=372 Identities=16% Similarity=0.174 Sum_probs=276.3
Q ss_pred HHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCC
Q psy12594 59 HAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD 138 (542)
Q Consensus 59 ~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 138 (542)
..|+..|.+++ ++...-..++....+.-||+.|..++.++......+|..++-..+....+.+.|.++.|++++...+
T Consensus 281 rva~ylLlNlA--ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 281 RVAVYLLLNLA--EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHh--hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 45677888999 8766667788889999999999999999999999999999987755555888999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh
Q psy12594 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll 218 (542)
++++...+..+.|++.+ ...+..++..|.+|.+..++.++.. ...|+..+..++. +.+....+.....++.+.+.+
T Consensus 359 ~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred HHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999984 4668999999999999999997652 3346667778877 445566666678888888766
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHH
Q psy12594 219 NN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLD 295 (542)
Q Consensus 219 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 295 (542)
-. .+.++--..+....|+|-+. ...+.+.+..++. |+..--.. |+-+ ...++|++.|.......+++ .+.
T Consensus 435 ~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvg 507 (791)
T KOG1222|consen 435 LSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVG 507 (791)
T ss_pred HhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHH
Confidence 53 35555555555556888765 3667777777777 77654433 5433 35678888887554444433 344
Q ss_pred HHHHhhhcCC-ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 296 GLLRLIDCNG-GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTAL 373 (542)
Q Consensus 296 ~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l 373 (542)
.|...++..+ ......++.+++||.-.+-+..+.+.+.+.+|.+...|..+-+ +++.....-++|.+ +........+
T Consensus 508 dLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~-a~d~~cA~Ll 586 (791)
T KOG1222|consen 508 DLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTM-ARDLDCARLL 586 (791)
T ss_pred HHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhh-hhhhHHHHHh
Confidence 5555555544 3466778888888888778888888899999999999987654 56777777778887 4555666677
Q ss_pred HHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594 374 CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCD 443 (542)
Q Consensus 374 ~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~ 443 (542)
..+++++.++++|+....++++-....+....++. ....-..|++|.. +.+.++++.+=.+|--+...+
T Consensus 587 a~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMH-DkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 587 APAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMH-DKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred CccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHh-cccHHHHHHHHHHHHHHHHhh
Confidence 78899999999999876556666666666655532 2233456889998 888888777666666554445
Q ss_pred hh
Q psy12594 444 PV 445 (542)
Q Consensus 444 ~~ 445 (542)
..
T Consensus 666 ~E 667 (791)
T KOG1222|consen 666 KE 667 (791)
T ss_pred HH
Confidence 43
No 30
>KOG0168|consensus
Probab=99.61 E-value=2.8e-13 Score=136.04 Aligned_cols=258 Identities=16% Similarity=0.176 Sum_probs=208.8
Q ss_pred hHHHHhhhcCC-ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 43 VDLIVPLLADK-VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 43 i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
+..|+.-|+.+ |+..|..|+.-|+.+.+-.+++....+--..++|.|+.+|++ .+.++...|+++|.+|+.--|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44455555554 899999999888887754556665566666789999999997 5699999999999999988777777
Q ss_pred -HhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 121 -LIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 121 -~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
+++.++||.|+.-|..- --++-++++.+|..|++.. -+.+++.|++...+.++.--....|+.|+.+..|+|..-
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999877654 4789999999999999744 367899999999999998778899999999999999843
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc---CChhhHHHHHhhchHH-HHHhhcCC----ChhHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK---DSPSLASTIADGATTL-AVEHLTYP----HGLVQKNA 270 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~-L~~lL~~~----~~~v~~~a 270 (542)
+.-....+ ...+|.|..+|+..|....+.++-++..++. +.++..+.+...+.+. ..+++.-. +..+....
T Consensus 326 ~sd~f~~v-~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 326 RSDEFHFV-MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CCccchHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence 22222233 4678999999999999999999999999976 4555667778889998 88888765 45677788
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC
Q psy12594 271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN 304 (542)
Q Consensus 271 ~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 304 (542)
+..|..++.+.|.....+.+.++...|..++.+.
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 8999999999898888888888888888887653
No 31
>KOG1293|consensus
Probab=99.58 E-value=1.6e-12 Score=127.86 Aligned_cols=425 Identities=12% Similarity=0.059 Sum_probs=278.6
Q ss_pred HHHHHHHhcC-CCCchHHHHhCCchHHHHhhhcCCCh--HHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc
Q psy12594 20 FVQTMSAFAD-KPSTIHFLKDLNVVDLIVPLLADKVP--SIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK 95 (542)
Q Consensus 20 ~~~~l~~l~~-~~~~~~~l~~~g~i~~L~~lL~s~~~--~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~ 95 (542)
++....++.- ++...+.+.+.|.++.|+.++..+++ ..+...+..+..++ .. .+....+.+...++.++++|+.
T Consensus 29 ai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f--~~eqd~v~svL~~~~ll~Ll~LLs~ 106 (678)
T KOG1293|consen 29 AIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLF--LGEQDKVDSVLRIIELLKLLQLLSE 106 (678)
T ss_pred HHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHH--hhccchHHHHHHHhhHHHHHHHhcC
Confidence 3444444444 66677789999999999999987664 55556777788887 44 6677788899999999999998
Q ss_pred CC-HHHHHHHHHHHHHHhcCChhhhh---HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q psy12594 96 QN-KHYKKTALHMLTCVAQQDERCAG---LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP 171 (542)
Q Consensus 96 ~~-~~~~~~a~~~L~~l~~~~~~~~~---~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 171 (542)
.+ ..++...+.+++.+...++.... ......++.+..++..+.......-+....+++. .+..+....+.|+.+.
T Consensus 107 sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~-~~~hq~Il~Na~i~ek 185 (678)
T KOG1293|consen 107 SDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSS-TKDHQLILCNAGILEK 185 (678)
T ss_pred cchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc-cchhhheeccccchhh
Confidence 88 78888899999999877654444 2333455555555542332222223333334443 4565667777888777
Q ss_pred HHHhccCCCHhHHHHHHHHHH---HHhcCCHHHHHH----hhhCCChH--HHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594 172 LVQILASPQLSLKHAAAFALD---GIVKHSPELAES----ASDCDVIP--LLIKALNNDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 172 L~~ll~~~~~~~~~~a~~~L~---nl~~~~~~~~~~----~~~~~~i~--~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
+.-++...+..+|.+|+.+++ ++...++..... ..+.|+.+ .+.+++++++...+-.++.++.++.+.+.+
T Consensus 186 I~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~ 265 (678)
T KOG1293|consen 186 INILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFN 265 (678)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcccc
Confidence 777777767889999999999 887767665544 34566666 566778888888888888888888765511
Q ss_pred hH-----HHHHhhc-------------------------hHH--HHHhh---cCC--ChhHHH---HHHHHHHHHhcCCh
Q psy12594 243 LA-----STIADGA-------------------------TTL--AVEHL---TYP--HGLVQK---NAATLLRDMCKHNL 282 (542)
Q Consensus 243 ~~-----~~~~~~~-------------------------~i~--L~~lL---~~~--~~~v~~---~a~~~L~~L~~~~~ 282 (542)
.. ..+...| ++. +..+. +.. ...+.. ..+.+-+.+....+
T Consensus 266 ~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~ 345 (678)
T KOG1293|consen 266 YDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDE 345 (678)
T ss_pred ccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcch
Confidence 00 0001110 011 00011 111 111111 11122222222223
Q ss_pred HHHHHHHhc----------------------CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHH
Q psy12594 283 RLANLVVLA----------------------GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQ 340 (542)
Q Consensus 283 ~~~~~~~~~----------------------~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 340 (542)
.....+.+. .+...+.......+...+.+|+.++.+++..-......+-..++..+|+
T Consensus 346 ~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plv 425 (678)
T KOG1293|consen 346 KYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLV 425 (678)
T ss_pred hhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 222221111 1122222222334555777788788777665444444455668899999
Q ss_pred HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC--------
Q psy12594 341 TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN-------- 412 (542)
Q Consensus 341 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~-------- 412 (542)
+++.. ++..++..++.+|.|++-.....+..++..|++..+...+.+.+ +.+|..+.|+|.++.-.++.
T Consensus 426 qll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~--~n~r~~~~~~Lr~l~f~~de~~k~~~~~ 502 (678)
T KOG1293|consen 426 QLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD--FNSRANSLWVLRHLMFNCDEEEKFQLLA 502 (678)
T ss_pred HHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC--chHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99976 45689999999999999888888999999999999999999874 58999999999999754321
Q ss_pred ---chhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHH
Q psy12594 413 ---PKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFV 451 (542)
Q Consensus 413 ---i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~ 451 (542)
-..+..+.+ +.|+.|...++..+.|+++...+.-..+.
T Consensus 503 ki~a~~i~~l~n-d~d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 503 KIPANLILDLIN-DPDWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HhhHHHHHHHHh-CCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 234555666 88999999999999999998655544443
No 32
>KOG1061|consensus
Probab=99.58 E-value=2.1e-13 Score=136.88 Aligned_cols=407 Identities=17% Similarity=0.184 Sum_probs=287.1
Q ss_pred CCchHHHHhhhcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
.|.++.+.+-+.+..+.-|..|+ +++..+. ...+. +..++.+++++...+-+.++.+-..+.+.+...++.
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt--~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMT--VGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCc--cCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH
Confidence 45666666666655555555555 5666666 44333 457888999999889999999999999999887766
Q ss_pred hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
.. +++..++.-..++++.+|..|++.++.+-. +...+.+ ..++.+.+++.++.+|..++.+..++-..+
T Consensus 84 a~----~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~ey~-----~~Pl~~~l~d~~~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 84 AI----LAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITEYL-----CDPLLKCLKDDDPYVRKTAAVCVAKLFDID 152 (734)
T ss_pred HH----hhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHHHH-----HHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence 55 678888898999999999999888777654 2222332 678999999999999999999999988754
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
+ +.+.+.|.++.|..++.+.++.+...|+.+|..+...+++.-........+. ++..+...+++-+.....++.+-
T Consensus 153 ~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 153 P---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEY 229 (734)
T ss_pred h---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 4 4555689999999999999999999999999999887654222333345556 77777777888888888877777
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 357 (542)
...++...+ ..+.++...|.+.+..+...+...+.++...-+.....+. ...-+.|+.++...+ +++..+++
T Consensus 230 ~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~--e~qyvaLr 301 (734)
T KOG1061|consen 230 VPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES--EIQYVALR 301 (734)
T ss_pred CCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc--hhhHHHHh
Confidence 655553333 3455888899999999999999988888765444333333 367778888887754 67766666
Q ss_pred HHHHhhcCChHHHHH-------------------------HHHcCChHHHHHHHhcCCC--ChHHHHHHHHHHHHHHhh-
Q psy12594 358 TLGQIGKHSVDNVTA-------------------------LCEENVLSTLLSKITQTCV--SDNLKSKCKNALNILIPK- 409 (542)
Q Consensus 358 ~L~~l~~~~~~~~~~-------------------------l~~~~~l~~L~~ll~~~~~--~~~v~~~a~~aL~nl~~~- 409 (542)
-+.-+....|+.... +.....++.++.-+....+ +.+.-+++.+|++++..+
T Consensus 302 Ni~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~ 381 (734)
T KOG1061|consen 302 NINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKA 381 (734)
T ss_pred hHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhh
Confidence 665554444432211 1122233334444443322 345557899999999644
Q ss_pred ---CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCCCcHHH-HHHHHhccC
Q psy12594 410 ---CENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAP-HLKTINACF 479 (542)
Q Consensus 410 ---~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~~~~~~-a~~~l~~~~ 479 (542)
.+.+..|.++++ .+-..++++++..+..++++.|+..+.++...+ ..+..+ .+++.+. .+|+++.|.
T Consensus 382 e~~~~cv~~lLell~-~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~-~~~~sl-~epeak~amiWilg~y~ 452 (734)
T KOG1061|consen 382 EQSNDCVSILLELLE-TKVDYVVQEAIVVIRDILRKYPNKYESVVAILC-ENLDSL-QEPEAKAALIWILGEYA 452 (734)
T ss_pred hhhhhhHHHHHHHHh-hcccceeeehhHHHHhhhhcCCCchhhhhhhhc-cccccc-CChHHHHHHHHHHhhhh
Confidence 245888999998 888899999999999999999987665554321 122222 4555654 456776664
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.57 E-value=1.4e-12 Score=136.68 Aligned_cols=382 Identities=20% Similarity=0.216 Sum_probs=271.8
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT 94 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~ 94 (542)
.|..+++++.++.. ++..+ ..++.+.+++.+++|.+|..|+.++.++. .. ++.. ... +++.+.++|.
T Consensus 95 ~~~lAL~~l~~i~~-~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~--~~~p~~~---~~~-~~~~l~~lL~ 162 (526)
T PF01602_consen 95 IRGLALRTLSNIRT-PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIY--RKDPDLV---EDE-LIPKLKQLLS 162 (526)
T ss_dssp HHHHHHHHHHHH-S-HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHH--HHCHCCH---HGG-HHHHHHHHTT
T ss_pred HHHHHHhhhhhhcc-cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHh--ccCHHHH---HHH-HHHHHhhhcc
Confidence 46677788887773 33332 34677889999999999999999999998 33 3321 122 5888999999
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q psy12594 95 KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ 174 (542)
Q Consensus 95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 174 (542)
+.++.++..|+.++..+ ..++....-.-...++.|.+++...+|..+...+..|..++...+..... ..+++.+..
T Consensus 163 d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~ 238 (526)
T PF01602_consen 163 DKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLN 238 (526)
T ss_dssp HSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHH
Confidence 89999999999999999 33332211111234566666677889999999999999998766665422 344788888
Q ss_pred hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594 175 ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254 (542)
Q Consensus 175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 254 (542)
++++.++.+...++.++..+.. .+... ..+++.|..++.++++.++..++..|..++...+ ..+. ....
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~-~~~~~-----~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~---~~v~--~~~~ 307 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSP-SPELL-----QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP---PAVF--NQSL 307 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS-SHHHH-----HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH---HHHG--THHH
T ss_pred HhhccccHHHHHHHHHHHHhhc-chHHH-----HhhHHHHHHHhhcccchhehhHHHHHHHhhcccc---hhhh--hhhh
Confidence 8888889999999999998887 34322 3456899999999999999999999999988762 1121 2222
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhhcCChHHHHHHHh
Q psy12594 255 AVEHLT-YPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332 (542)
Q Consensus 255 L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 332 (542)
.+..+. ++|..++..++..|..++. +.+... +++.|..++. ..++.++..++..++.++...+....
T Consensus 308 ~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~---- 376 (526)
T PF01602_consen 308 ILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAE---- 376 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHH----
T ss_pred hhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHH----
Confidence 333444 7799999999999999984 333332 4668888884 44777999999999998865433332
Q ss_pred hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy12594 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN 412 (542)
Q Consensus 333 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~ 412 (542)
..++.+++++.... +.+...+...+.++....++.... .+..+++.+.+-. +++++..++|.++......+.
T Consensus 377 -~~v~~l~~ll~~~~-~~~~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~-~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 377 -WYVDTLLKLLEISG-DYVSNEIINVIRDLLSNNPELREK-----ILKKLIELLEDIS-SPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp -HHHHHHHHHHHCTG-GGCHCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSS-SHHHHHHHHHHHHHHCHHHTT
T ss_pred -HHHHHHHHhhhhcc-ccccchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhh-HHHHHHHHHhhhcccCCcccc
Confidence 35677888888744 477888888888887766664433 3677888888743 678999999999999766544
Q ss_pred ---chhhHH----hhcCCCCHHHHHHHHHHHHhhCCCCh
Q psy12594 413 ---PKELEQ----MLLGNVSEELLASILCAFAKILPCDP 444 (542)
Q Consensus 413 ---i~~L~~----lL~~~~~~~v~~~~l~~l~~ll~~~~ 444 (542)
.+.+.+ .+. ..++.+...++.++.++....+
T Consensus 449 ~~~~~~~~~~l~~~~~-~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 449 TESAPDILRSLIENFI-EESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TTHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhCC
Confidence 333333 333 5566788888888888766554
No 34
>KOG2171|consensus
Probab=99.56 E-value=8.7e-12 Score=130.45 Aligned_cols=392 Identities=15% Similarity=0.114 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhh
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDL 93 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L 93 (542)
.|.+..+.+++++++.--- .=.+.++.|..-.+|.++..|..|+.+|..+. .. ......+. .+.+.+.+.+
T Consensus 96 vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~--~~~~~~~~~~~~--~l~~lf~q~~ 168 (1075)
T KOG2171|consen 96 VRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLP--ETFGNTLQPHLD--DLLRLFSQTM 168 (1075)
T ss_pred HHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhh--hhhccccchhHH--HHHHHHHHhc
Confidence 4777778888888743222 11456777777788999999999999999999 44 22222221 2445556667
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhhh-H-hhcCChHHHH----hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594 94 TKQNKHYKKTALHMLTCVAQQDERCAG-L-IEDKDLDSII----SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG 167 (542)
Q Consensus 94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~g~v~~Lv----~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g 167 (542)
.+++..+|..+++++..++...+.... . .-...+|.++ ..++.+|.+.-..+..+|..++...+.+....+..
T Consensus 169 ~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~- 247 (1075)
T KOG2171|consen 169 TDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ- 247 (1075)
T ss_pred cCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-
Confidence 776666999999999998754421111 1 1113455444 44556677777888999999987777655544432
Q ss_pred ChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHHHhh--hCCChHHHHHhhcCC--C--------------HHHHH
Q psy12594 168 ALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAESAS--DCDVIPLLIKALNND--E--------------VNVKA 227 (542)
Q Consensus 168 ~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~~~~--~~~~i~~L~~ll~~~--~--------------~~~~~ 227 (542)
++...++..++. +..+|..|+.+|..+++..|..++..- -...++.++.++.+. | ..--.
T Consensus 248 ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~ 327 (1075)
T KOG2171|consen 248 IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYR 327 (1075)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHH
Confidence 355556666654 488999999999999986554444322 233456666666421 1 11345
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc
Q psy12594 228 DAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG 306 (542)
Q Consensus 228 ~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 306 (542)
.|..+|-.++.+-+. ..+-..+++ +-.++.+.+..-|..++.+|+.++.+.++...... ..+++.++..|.++++
T Consensus 328 ~A~~~lDrlA~~L~g---~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphp 403 (1075)
T KOG2171|consen 328 AAEQALDRLALHLGG---KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHP 403 (1075)
T ss_pred HHHHHHHHHHhcCCh---hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCH
Confidence 677778777765431 112234566 77888999999999999999999998877665433 4788999999999999
Q ss_pred cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHH
Q psy12594 307 YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN-VTALCEENVLSTLLSK 385 (542)
Q Consensus 307 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~~L~~l 385 (542)
.||.+|+.++|.++..-....+......+.+.|+..+.+.....++..|+.++-|+....+.. ....+ .+++..++..
T Consensus 404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~ 482 (1075)
T KOG2171|consen 404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLL 482 (1075)
T ss_pred HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHH
Confidence 999999999999988655555555666788899999998777889999999999997655432 22222 2455544445
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhCC---------CchhhHHhhc
Q psy12594 386 ITQTCVSDNLKSKCKNALNILIPKCE---------NPKELEQMLL 421 (542)
Q Consensus 386 l~~~~~~~~v~~~a~~aL~nl~~~~~---------~i~~L~~lL~ 421 (542)
|..+. ...+|+.++.+|+.....++ .+|.|...|+
T Consensus 483 L~~~~-~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 483 LLQSS-KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HhcCC-chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence 55443 57999999999999976543 1456666666
No 35
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=2e-12 Score=118.41 Aligned_cols=194 Identities=15% Similarity=0.208 Sum_probs=163.5
Q ss_pred HhCCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh
Q psy12594 38 KDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE 116 (542)
Q Consensus 38 ~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~ 116 (542)
.+++-++.|+.+|+ +.||.++..|..++++.+ ..+.+++.+.+.|+++.+..+|..+++.++..|+.+|.+++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a--af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSA--AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc--cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 56677888999998 568999999999999999 889999999999999999999999999999999999999987764
Q ss_pred hhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594 117 RCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194 (542)
Q Consensus 117 ~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl 194 (542)
....+ +. .++.+++...+. +..++..++++|.+++..+ .....+. +.++.++.++.+++...+..++++|.||
T Consensus 87 n~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 44443 22 455555544333 6889999999999998643 3344443 3599999999999999999999999999
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKD 239 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~ 239 (542)
+. +|...+.++..++++.|+.++... +.++...+++.+.||..+
T Consensus 162 S~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 99 788888888899999999999865 788899999999999653
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=3.9e-12 Score=116.49 Aligned_cols=194 Identities=18% Similarity=0.230 Sum_probs=160.9
Q ss_pred HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 121 LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
+.+.+-++.|+.+|+. .||.+++.+..++++.+. .+..++.+.+.|+++.+..++.++++.++..|+++|.|++. +.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Ch
Confidence 4556778999999985 579999999999999866 67789999999999999999999999999999999999998 55
Q ss_pred HHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 200 ELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 200 ~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
++...+- ..++.+++.+.+. +.+++..++.+|.+|+... +.+..+. ..++ ++++|..++..++..++++|.|
T Consensus 86 en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 ENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5665543 2466666654433 7789999999999998775 3555554 4688 9999999999999999999999
Q ss_pred HhcCChHHHHHHHhcCCHHHHHHhhhcC-CccchHHHHHHHhHhhcC
Q psy12594 277 MCKHNLRLANLVVLAGGLDGLLRLIDCN-GGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~ 322 (542)
|+. +|...+.+...++.+.++.++... +.++...++..+.||..+
T Consensus 161 LS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 994 566666688889999999999886 556888999999999653
No 37
>KOG1293|consensus
Probab=99.50 E-value=4.5e-12 Score=124.75 Aligned_cols=388 Identities=11% Similarity=0.080 Sum_probs=256.4
Q ss_pred HHHHHHHHHhcC-CCCchHHHHhCCchHHHHhhhcCCC-hHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc
Q psy12594 18 LCFVQTMSAFAD-KPSTIHFLKDLNVVDLIVPLLADKV-PSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT 94 (542)
Q Consensus 18 ~~~~~~l~~l~~-~~~~~~~l~~~g~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~ 94 (542)
..+...+..+.. .+.....+.+.+.++.|..++.+.| ..++...+..++.+.+... .+..........++.+..++.
T Consensus 71 ~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s 150 (678)
T KOG1293|consen 71 NGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS 150 (678)
T ss_pred hhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh
Confidence 344555554444 5667788889999999999999888 7889999999999993332 222233333445555555555
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHH---HhhcCChHHHHH----HHHc
Q psy12594 95 KQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALG---GLAKDNKHFAER----IVQC 166 (542)
Q Consensus 95 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~---~l~~~~~~~~~~----i~~~ 166 (542)
.+.......-+....+++... +++. ....|+.+.+.-++.......|..|..++. ++...++..... ..+.
T Consensus 151 ~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~ 229 (678)
T KOG1293|consen 151 IELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK 229 (678)
T ss_pred hhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc
Confidence 344444455444444555444 6666 778899988888888778899999999999 777766654443 3445
Q ss_pred CChH--HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH----H-HhhhCC----------------Ch-----H-----H
Q psy12594 167 GALP--PLVQILASPQLSLKHAAAFALDGIVKHSPELA----E-SASDCD----------------VI-----P-----L 213 (542)
Q Consensus 167 g~i~--~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~----~-~~~~~~----------------~i-----~-----~ 213 (542)
|+.+ .+.+++++++.+.+..++.++.++...+.... . ...+.| ++ . .
T Consensus 230 ~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~ 309 (678)
T KOG1293|consen 230 GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCI 309 (678)
T ss_pred ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHH
Confidence 6666 67788899988888999999998877441100 0 111111 00 0 0
Q ss_pred HHHhhc---CC-----CHHHHHHHHHHHHHHhcCChhhHHHH----------------------HhhchHH-HHHhhcCC
Q psy12594 214 LIKALN---ND-----EVNVKADAFLCLADIAKDSPSLASTI----------------------ADGATTL-AVEHLTYP 262 (542)
Q Consensus 214 L~~ll~---~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~----------------------~~~~~i~-L~~lL~~~ 262 (542)
+....+ .. ..+.......+-+.++...+..+... .+..... +.......
T Consensus 310 ~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k 389 (678)
T KOG1293|consen 310 LARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK 389 (678)
T ss_pred HHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc
Confidence 011111 00 01111112222233333333322222 2222222 22222334
Q ss_pred ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594 263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI 342 (542)
Q Consensus 263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 342 (542)
|.+.+..++.++.++++.-.....-+....++++|++++..++..+...++.+|.|++..-......++..|+++.+..+
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 78889999999998886543333334456789999999999999999999999999998878888899999999999999
Q ss_pred hcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHH-HHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 343 LQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLST-LLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 343 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~-L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
+.+. +..++..+.|+|.++.-+.++..+......+... +..+..++ +..|++.+...|.|+.-+
T Consensus 470 ~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 470 LTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhcC
Confidence 9985 5689999999999999888776666655555444 44555555 569999999999999643
No 38
>KOG2023|consensus
Probab=99.49 E-value=4.8e-12 Score=124.20 Aligned_cols=349 Identities=14% Similarity=0.120 Sum_probs=224.1
Q ss_pred cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh--Hhhc---CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh
Q psy12594 83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG--LIED---KDLDSIISSLHDFDPDTRANAALALGGLAKDNK 157 (542)
Q Consensus 83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~---g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 157 (542)
..++|.|..+|.+++.....-|..+|.+++.++.+.-. +... -.+|.++++.++++|.+|..|+.|+-.+.-..+
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 45788999999998888999999999999987655433 2211 368999999999999999999999887663222
Q ss_pred HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 158 HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 158 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
...-.-+ ...++.+..+-.++++++|...+.+|..|...-++....-. .++++.+++..++.+.++.-.||.....+|
T Consensus 207 qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 207 QALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 2111111 13467778888888999999999999999885554333222 567788888888999999999999999999
Q ss_pred cCChhhHHHHHh--hchHH-HHHhhcCCChhH--HH------------------------HH------------------
Q psy12594 238 KDSPSLASTIAD--GATTL-AVEHLTYPHGLV--QK------------------------NA------------------ 270 (542)
Q Consensus 238 ~~~~~~~~~~~~--~~~i~-L~~lL~~~~~~v--~~------------------------~a------------------ 270 (542)
... -+...+.. ..++| |++-+..++.++ .. ..
T Consensus 285 eqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 285 EQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred cCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 875 34443332 35666 654432221100 00 00
Q ss_pred ----HHHHHHHhcCChHHHHHHHhcC----CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594 271 ----ATLLRDMCKHNLRLANLVVLAG----GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI 342 (542)
Q Consensus 271 ----~~~L~~L~~~~~~~~~~~~~~~----~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 342 (542)
-|-|+..+...-+....+.... .+|.|-+.|.++++.++++++.++|.++.+.-.......- ..+|.|+.+
T Consensus 364 D~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~ 442 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSL 442 (885)
T ss_pred cccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHH
Confidence 0111111111111111122223 4555556667788899999999999998765443221111 468888899
Q ss_pred hcCCChhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC--CchhhHHh
Q psy12594 343 LQCPHKEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE--NPKELEQM 419 (542)
Q Consensus 343 l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~--~i~~L~~l 419 (542)
|.+ ..+.+|.-+||+|+..+..-. +..+.... .++..|++.+.++ +..||+.|+.|+..+.++++ .+|.|..+
T Consensus 443 L~D-KkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~--NK~VQEAAcsAfAtleE~A~~eLVp~l~~I 518 (885)
T KOG2023|consen 443 LDD-KKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDS--NKKVQEAACSAFATLEEEAGEELVPYLEYI 518 (885)
T ss_pred hcc-CccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 987 457899999999999864211 01111111 1334444444444 46999999999999987753 36666666
Q ss_pred hcC---------CCCHHHHHHHHHHHHhh
Q psy12594 420 LLG---------NVSEELLASILCAFAKI 439 (542)
Q Consensus 420 L~~---------~~~~~v~~~~l~~l~~l 439 (542)
|+. .++--++.-+++++..-
T Consensus 519 L~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 519 LDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred HHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 551 12334555566666544
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.49 E-value=8.9e-13 Score=108.52 Aligned_cols=118 Identities=25% Similarity=0.386 Sum_probs=111.4
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~ 200 (542)
+++.|+++.+++++.++++.++..++++|.+++...+.....+.+.|+++.+++++.++++.++..++++|+||+.+.+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999998889999999999999999999999999999999999999998878
Q ss_pred HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594 201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238 (542)
Q Consensus 201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 238 (542)
....+.+.|+++.+++++.+.+.++++.++|+|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 88888889999999999999999999999999999874
No 40
>KOG1241|consensus
Probab=99.49 E-value=1.2e-11 Score=123.51 Aligned_cols=425 Identities=15% Similarity=0.123 Sum_probs=267.9
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHH
Q psy12594 11 DHYQRARLCFVQTMSAFAD--KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVAL 88 (542)
Q Consensus 11 ~~~~~~r~~~~~~l~~l~~--~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~ 88 (542)
+...++|..++.+|++... ...........=+++..+..-+++|.+++..|+.+|.+|.+..++-... ......+..
T Consensus 185 e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~-yM~~alfai 263 (859)
T KOG1241|consen 185 ETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP-YMEQALFAI 263 (859)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4445678888888877655 1111112222234455667778899999999999999999544444433 334456666
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCChhhh----hHhh---------------cCChHHHHhhhcCCC-------HHHH
Q psy12594 89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCA----GLIE---------------DKDLDSIISSLHDFD-------PDTR 142 (542)
Q Consensus 89 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~---------------~g~v~~Lv~lL~~~~-------~~~~ 142 (542)
-+..++++++++...++.+..++|....+.. ...+ .+++|.|+++|...+ ...-
T Consensus 264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~ 343 (859)
T KOG1241|consen 264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA 343 (859)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence 7778889999999999999998886543311 1111 156788888885421 2344
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC
Q psy12594 143 ANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222 (542)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 222 (542)
..|..||.-++.. +.+.++. .++|.+-+-+++++..-++.++.+++.+-.+....+..-+-.+++|.++.++.++.
T Consensus 344 kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 344 KAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred HHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 5555566555531 1223332 33454555677889999999999999998865444544445899999999999888
Q ss_pred HHHHHHHHHHHHHHhcCChhhHH-HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH----HhcCCHHH
Q psy12594 223 VNVKADAFLCLADIAKDSPSLAS-TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV----VLAGGLDG 296 (542)
Q Consensus 223 ~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~----~~~~~i~~ 296 (542)
.-++..+.|+|+.++...++... .......++ ++.-|. +.+.+..++||++.+|+.+.++....- .....++.
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ 498 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEA 498 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHH
Confidence 88999999999999988763332 111123333 333332 258899999999999986543221100 00123344
Q ss_pred HHHhh----hc---CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHH---------hhcCCCh---hhHHHHHHH
Q psy12594 297 LLRLI----DC---NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQT---------ILQCPHK---EQLQVAAAW 357 (542)
Q Consensus 297 Lv~lL----~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~---------ll~~~~~---~~v~~~a~~ 357 (542)
++.-| .. .+.+.|.+|..+|+.+...+++.....+. +....++. .+..... .+++...|.
T Consensus 499 ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 499 IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 34332 22 23358999999999999887766544432 22222222 2222111 356667777
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC---------CCchhhHHhhcCCCCHHH
Q psy12594 358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC---------ENPKELEQMLLGNVSEEL 428 (542)
Q Consensus 358 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~---------~~i~~L~~lL~~~~~~~v 428 (542)
+|+.+...-......+.+ .++..+++++.++. +--+.++|..+++.++... .+.|.|..-|++..+..|
T Consensus 578 ~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~-s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 578 TLQSIIRKVGSDIREVSD-QIMGLFLRIFESKR-SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHccccchhHHH-HHHHHHHHHHcCCc-cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 787776654443333333 47788888998844 4568888888888886442 235666666642556678
Q ss_pred HHHHHHHHHhhCCCCh
Q psy12594 429 LASILCAFAKILPCDP 444 (542)
Q Consensus 429 ~~~~l~~l~~ll~~~~ 444 (542)
...+.+.+..+.+.-.
T Consensus 656 c~~aVglVgdl~raL~ 671 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALE 671 (859)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877755433
No 41
>KOG2023|consensus
Probab=99.45 E-value=2e-12 Score=126.85 Aligned_cols=439 Identities=14% Similarity=0.147 Sum_probs=264.3
Q ss_pred CchHHHHhhhc---CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHH-HhcCC-
Q psy12594 41 NVVDLIVPLLA---DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTC-VAQQD- 115 (542)
Q Consensus 41 g~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~-l~~~~- 115 (542)
.++..+..+|+ |+++.+|..+...+.++- ..++... ++-.++--+++.+...|..|-..|.| +-.+.
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~--~~pdfnn------YL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~ 81 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFN--LFPDFNN------YLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYN 81 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHh--cccchhc------eeeEEEecccccchhHHHHhhhhHhcccccccc
Confidence 45566677775 678899999988888887 5544321 22222222345566666666666666 22221
Q ss_pred ---hhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHH
Q psy12594 116 ---ERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192 (542)
Q Consensus 116 ---~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 192 (542)
++....++ ..+++.+.+.++-+|...--.+..+++.. ..... ..++|.|..+|.+++....+-|..+|.
T Consensus 82 ~~~~~~~~yiK----s~~l~~lgd~~~lIr~tvGivITTI~s~~-~~~~w---pelLp~L~~~L~s~d~n~~EgA~~AL~ 153 (885)
T KOG2023|consen 82 SIPSEVLDYIK----SECLHGLGDASPLIRATVGIVITTIASTG-GLQHW---PELLPQLCELLDSPDYNTCEGAFGALQ 153 (885)
T ss_pred CCChHHHHHHH----HHHHhhccCchHHHHhhhhheeeeeeccc-ccccc---hhHHHHHHHHhcCCcccccchhHHHHH
Confidence 11111222 23455666677766665555555554311 11111 245899999999999899999999999
Q ss_pred HHhcCCHHHHHHhhh----CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHH
Q psy12594 193 GIVKHSPELAESASD----CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQ 267 (542)
Q Consensus 193 nl~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~ 267 (542)
.+++++++.-+.-+. .-.+|.++++.+++++.+|..|+.++-.+.-..+. .-...-...++ +..+-.+.+++||
T Consensus 154 KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVR 232 (885)
T KOG2023|consen 154 KICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVR 232 (885)
T ss_pred HHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHH
Confidence 999977655443221 23468899999999999999999998877655431 11222245677 7888878899999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh--HHHHHHHhhCchHHHHHhhcC
Q psy12594 268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE--QIAEQIIELQGVGSLQTILQC 345 (542)
Q Consensus 268 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~ 345 (542)
.+.|.+|..|..-.++....- -.++++.++...++.+..+...|+.....++.... +....... +.+|.|++-+..
T Consensus 233 k~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Y 310 (885)
T KOG2023|consen 233 KNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVY 310 (885)
T ss_pred HHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCcc
Confidence 999999999987665543211 13567788888888899999999999988886531 11122221 566666544332
Q ss_pred CChhhHHHH-----------------------------------------------HHHHHHHhhcCChHHHHHHHHcCC
Q psy12594 346 PHKEQLQVA-----------------------------------------------AAWTLGQIGKHSVDNVTALCEENV 378 (542)
Q Consensus 346 ~~~~~v~~~-----------------------------------------------a~~~L~~l~~~~~~~~~~l~~~~~ 378 (542)
+.++.+... .-|-|....+..-+....++....
T Consensus 311 sd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el 390 (885)
T KOG2023|consen 311 SDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL 390 (885)
T ss_pred ccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH
Confidence 111100000 002222222211222223334444
Q ss_pred hHHHHHH----HhcCCCChHHHHHHHHHHHHHHhhC---------CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCCh-
Q psy12594 379 LSTLLSK----ITQTCVSDNLKSKCKNALNILIPKC---------ENPKELEQMLLGNVSEELLASILCAFAKILPCDP- 444 (542)
Q Consensus 379 l~~L~~l----l~~~~~~~~v~~~a~~aL~nl~~~~---------~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~- 444 (542)
++.++-+ |.+++ -.+|+.++.||+.+.+.| +.+|.|.++|. ++.+-|+..++|+|++.-..-.
T Consensus 391 L~~l~PlLk~~L~~~~--W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~-DKkplVRsITCWTLsRys~wv~~ 467 (885)
T KOG2023|consen 391 LPILLPLLKEHLSSEE--WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD-DKKPLVRSITCWTLSRYSKWVVQ 467 (885)
T ss_pred HHHHHHHHHHHcCcch--hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc-cCccceeeeeeeeHhhhhhhHhc
Confidence 5555444 44443 369999999999998765 23577888888 8888999999999987644321
Q ss_pred hhh-hHHHH--hcchHHhhhcC-CCCcHHH----HHHHHhccCccchhcccCccchHHHHHHHhhcCCC
Q psy12594 445 VAR-RSFVT--SHCLRKVQEIE-PTPEIAP----HLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQ 505 (542)
Q Consensus 445 ~~~-~~~~~--~g~~~~l~~l~-~~~~~~~----a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 505 (542)
..+ +.|.. .|.+ .++. .|+.+++ |...++.-...+.+.|+ ......+......|+.+
T Consensus 468 ~~~~~~f~pvL~~ll---~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l-~~IL~~l~~af~kYQ~K 532 (885)
T KOG2023|consen 468 DSRDEYFKPVLEGLL---RRLLDSNKKVQEAACSAFATLEEEAGEELVPYL-EYILDQLVFAFGKYQKK 532 (885)
T ss_pred CChHhhhHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHhhc
Confidence 111 22221 1211 2222 7888886 45555555555655544 33344555556666554
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.45 E-value=8.6e-11 Score=114.61 Aligned_cols=318 Identities=15% Similarity=0.101 Sum_probs=231.5
Q ss_pred CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-Hhhc-----CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594 84 NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-LIED-----KDLDSIISSLHDFDPDTRANAALALGGLAKDN 156 (542)
Q Consensus 84 ~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~-----g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 156 (542)
.+...++.+++. .++++..+.+..+..+....+.... +.+. .....++.+|+.+|..+...++..|+.+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 356677777775 6688888888888888877766666 5553 56788888999999999999999999998544
Q ss_pred hHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHH
Q psy12594 157 KHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCL 233 (542)
Q Consensus 157 ~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L 233 (542)
+.........-.++.+...++++ +...+..++.+|..|.. .++.|..+.+.++++.|..+++.. +..++..++.++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33211111111345566666654 47788888999999998 677888888889999999999853 568999999999
Q ss_pred HHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCC------hHHHHHHHhcCCHHHHHHhhhcC-
Q psy12594 234 ADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHN------LRLANLVVLAGGLDGLLRLIDCN- 304 (542)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~- 304 (542)
|-++-... ....+...++++ ++.+++.. .+.+.+-++.+|.|+.... ......+++.++. .++..|...
T Consensus 212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~~rk 289 (429)
T cd00256 212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLEQRK 289 (429)
T ss_pred HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHhcCC
Confidence 99998764 666677789999 99999988 7999999999999998643 2233445555554 455555443
Q ss_pred --CccchHHHHHHHhHh--------h--------------cCCh---------HHHHHHHhh--CchHHHHHhhcCCChh
Q psy12594 305 --GGYNSLPAIMALGYM--------S--------------AQSE---------QIAEQIIEL--QGVGSLQTILQCPHKE 349 (542)
Q Consensus 305 --~~~~~~~a~~~L~~l--------~--------------~~~~---------~~~~~~~~~--~~l~~L~~ll~~~~~~ 349 (542)
|+++. ..+..|... + .-+| +....+-+. .++..|++++..++++
T Consensus 290 ~~DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 290 YDDEDLT-DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCcHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 33322 222222211 1 0011 122222222 3678899999766677
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
.+..-||.-+|.++.+.|.-+..+-+.|+=..+++++.++ +++||.+|..|+..++
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~--d~~Vr~eAL~avQklm 424 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE--DPNVRYEALLAVQKLM 424 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 8888999999999999998888777889999999999987 5699999999998775
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.45 E-value=2.1e-12 Score=106.26 Aligned_cols=117 Identities=22% Similarity=0.363 Sum_probs=109.7
Q ss_pred HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+++.|+++.++++++++++.++..++++|.+++.++++....+++.++++.+.+++.+++++++..++|+|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35688999999999999999999999999999999888999999999999999999999999999999999999999887
Q ss_pred hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 242 SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 242 ~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
.....+...|+++ ++.++...+..+++.++++|.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7777888889999 999999999999999999999987
No 44
>KOG1241|consensus
Probab=99.45 E-value=2.3e-11 Score=121.44 Aligned_cols=385 Identities=18% Similarity=0.164 Sum_probs=251.5
Q ss_pred hcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC-HHHHHHHHHHHHHHhcC-ChhhhhHhhcCCh
Q psy12594 50 LADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN-KHYKKTALHMLTCVAQQ-DERCAGLIEDKDL 127 (542)
Q Consensus 50 L~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~-~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v 127 (542)
|.+..|.....|..++..++..+-|.+ . ..+.++.++.....+. ..++..++.+++.+|.+ +++...-....++
T Consensus 99 L~~~ep~~~s~Aaq~va~IA~~ElP~n--~--wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 99 LGSPEPRRPSSAAQCVAAIACIELPQN--Q--WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred cCCCCCCccchHHHHHHHHHHhhCchh--h--CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 344445555555555555551111111 0 1233444444444433 45899999999999977 3442223344677
Q ss_pred HHHHhhhcCC--CHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594 128 DSIISSLHDF--DPDTRANAALALGGLAKDNK-HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES 204 (542)
Q Consensus 128 ~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 204 (542)
..++..++.. +..+|..|..+|.+-..... .+....-..=++...++.-++++.+++.+|..||..|..-.-+....
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~ 254 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP 254 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777644 57899999999987653211 22222222334667778888899999999999999999855555555
Q ss_pred hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH----HH--------------HhhchHH-HHHhhcCC---
Q psy12594 205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS----TI--------------ADGATTL-AVEHLTYP--- 262 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~--------------~~~~~i~-L~~lL~~~--- 262 (542)
.........-+.-+++.++++.-+++..-+++|...-+..- .+ .-..++| |+++|...
T Consensus 255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~ 334 (859)
T KOG1241|consen 255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED 334 (859)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence 55555566666777888999999999999989865433111 00 0136788 88888652
Q ss_pred ----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHH
Q psy12594 263 ----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGS 338 (542)
Q Consensus 263 ----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 338 (542)
+-.+...|..||.-++....+. ++ ..++|-+-+-++++++.-+..|+.++|.+..+....+..-+..+++|.
T Consensus 335 ~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ 410 (859)
T KOG1241|consen 335 DDDDDWNPAKAAGVCLMLFAQCVGDD---IV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS 410 (859)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccc---ch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence 1235666667777666422111 11 144555555677899999999999999998877766666666799999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHH-HHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------
Q psy12594 339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA-LCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC------- 410 (542)
Q Consensus 339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~------- 410 (542)
++.++.++ .-.++..+.|+++.++.+.++.+-. ......++.++.-|++. +.+-.+++|++.+|.+.+
T Consensus 411 ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De---Prva~N~CWAf~~Laea~~eA~~s~ 486 (859)
T KOG1241|consen 411 IINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE---PRVASNVCWAFISLAEAAYEAAVSN 486 (859)
T ss_pred HHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC---chHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999964 4588899999999998877654322 33456788888888875 589999999999997431
Q ss_pred -------CCchh-hHHhhcC----C-CCHHHHHHHHHHHHhhCCCChhh
Q psy12594 411 -------ENPKE-LEQMLLG----N-VSEELLASILCAFAKILPCDPVA 446 (542)
Q Consensus 411 -------~~i~~-L~~lL~~----~-~~~~v~~~~l~~l~~ll~~~~~~ 446 (542)
.+.+. +-.||+. + .+..++..+-.+|..++...++.
T Consensus 487 ~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 487 GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 01222 2234441 1 23467777778888777776654
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.44 E-value=2.2e-10 Score=111.80 Aligned_cols=320 Identities=14% Similarity=0.128 Sum_probs=231.7
Q ss_pred CchHHHHhhhcC-CChHHHHHHHHHHHHhHccCC-hHHHHHHHh-----cCcHHHHHHhhccCCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKH-VDIRQEVLE-----RNLVALVLKDLTKQNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~-----~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~ 113 (542)
..+..++.+++. ..+++....+..+..+. .. +.....+.+ .+...+++.+|..++..+...++.+|..+..
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll--~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDML--QEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHH--HhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 566677788764 56788888888888888 55 554455554 3567888889998999999999999999875
Q ss_pred CChhhhh-HhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC--CHhHHHHHHH
Q psy12594 114 QDERCAG-LIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP--QLSLKHAAAF 189 (542)
Q Consensus 114 ~~~~~~~-~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~ 189 (542)
..+.... ....-.++-+...+... +...+..++.+|..+.. .+.+|..+.+.++++.|+.+|+.. +..++..++.
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 5432211 11111334455555544 36777788899999987 567789999999999999999863 4689999999
Q ss_pred HHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC------hhhHHHHHhhchHHHHHhhcCC
Q psy12594 190 ALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDS------PSLASTIADGATTLAVEHLTYP 262 (542)
Q Consensus 190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~i~L~~lL~~~ 262 (542)
++.-++. +++........+.++.++++++.. ..++.+-++.+|.|+.... ..+...++..++.+++..|...
T Consensus 210 ~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r 288 (429)
T cd00256 210 CIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQR 288 (429)
T ss_pred HHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcC
Confidence 9999998 555667777789999999999955 5679999999999999843 1244566666776655555543
Q ss_pred ---ChhHHHHHHHHHHH-------Hhc--------------CC---------hHHHHHHHhc--CCHHHHHHhhh-cCCc
Q psy12594 263 ---HGLVQKNAATLLRD-------MCK--------------HN---------LRLANLVVLA--GGLDGLLRLID-CNGG 306 (542)
Q Consensus 263 ---~~~v~~~a~~~L~~-------L~~--------------~~---------~~~~~~~~~~--~~i~~Lv~lL~-~~~~ 306 (542)
|+++....-..-.. ++. .+ .++...+.+. ..+..|+.+|. +.++
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 66654433222111 110 01 1333434433 24678889984 5567
Q ss_pred cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594 307 YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365 (542)
Q Consensus 307 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 365 (542)
.+..-||.=||.++...|.....+-+.|+-..+++++.++ +++++.+|+.|+..+..+
T Consensus 369 ~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLAVQKLMVH 426 (429)
T ss_pred ceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 7888899999999999998888888889999999999985 579999999999988543
No 46
>KOG0168|consensus
Probab=99.41 E-value=2.2e-10 Score=115.62 Aligned_cols=257 Identities=16% Similarity=0.139 Sum_probs=208.4
Q ss_pred cHHHHHHhhccC-CHHHHHHHHHHHHHH-hcCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHH
Q psy12594 85 LVALVLKDLTKQ-NKHYKKTALHMLTCV-AQQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFA 160 (542)
Q Consensus 85 ~l~~Lv~~L~~~-~~~~~~~a~~~L~~l-~~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~ 160 (542)
-+..|+.-|... ++..+.+++.=|+.+ ...+++... +--..++|.|+.+|+++. .+++..|+++|.+++..-|.-.
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 455666667654 788888887777764 455655555 555678999999999874 9999999999999998888888
Q ss_pred HHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594 161 ERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 239 (542)
..+++.++||.|+.-|..- ..++.++++.+|..|++..+ ..+.+.|++...+..+.-.....++.|+.+..|+|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999877764 48999999999999998544 4667799999999999888889999999999999975
Q ss_pred Ch-hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc---CChHHHHHHHhcCCHHHHHHhhhcCCcc----chH
Q psy12594 240 SP-SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK---HNLRLANLVVLAGGLDGLLRLIDCNGGY----NSL 310 (542)
Q Consensus 240 ~~-~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~~~i~~Lv~lL~~~~~~----~~~ 310 (542)
-. +-...+. ..+| |..+|+..|....+.++-|+..++. +.++..+.+...+.+....+++.-.... +..
T Consensus 325 i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 325 IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 32 2222232 6799 9999999999999999999999865 4577777788889999999998766432 556
Q ss_pred HHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594 311 PAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 311 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 346 (542)
..++.+..++.+++-....+.+.++...|..+|...
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 677888888889899999999999999999888764
No 47
>PTZ00429 beta-adaptin; Provisional
Probab=99.37 E-value=3.6e-09 Score=111.32 Aligned_cols=370 Identities=14% Similarity=0.085 Sum_probs=227.0
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 122 (542)
+..+.+=+++.+|.+|..|+++++++. . ++..+ -.++.+.+.+.+.++.||+.|+.++.++-..+++. +.
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir--~-~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel--v~ 176 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIR--V-SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL--FY 176 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC--c-HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc--cc
Confidence 344444556677888888888777776 2 22211 13456677788899999999999999987655432 34
Q ss_pred hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA 202 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~ 202 (542)
+.+.++.|.++|.+.|+.+...|+.+|..+...++.... ...+.+..|+..+.+-++-.|...+.+|....-.+.+..
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~ 254 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA 254 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH
Confidence 567888999999999999999999999999865543211 223345667777776666666666666654322111111
Q ss_pred HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594 203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~ 280 (542)
...+..+...+++.++.|.-.|+.++.++.... ++....+.. .+.. ++.+ .+++++++..++..+..+...
T Consensus 255 -----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 255 -----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHHHH
Confidence 245577888888889999999999999887542 222222221 2223 5555 345677777777766666544
Q ss_pred ChHHHHHHH-------------------------hc----CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594 281 NLRLANLVV-------------------------LA----GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII 331 (542)
Q Consensus 281 ~~~~~~~~~-------------------------~~----~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 331 (542)
.|.....-. +. .++..|.++..+.+...+..+++++|.++..-+....
T Consensus 328 ~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~--- 404 (746)
T PTZ00429 328 FPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP--- 404 (746)
T ss_pred CHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH---
Confidence 432211100 00 1334455555566667778888888888765444332
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh-cCCCChHHHHHHHHHHHHHHhhC
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT-QTCVSDNLKSKCKNALNILIPKC 410 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~~~v~~~a~~aL~nl~~~~ 410 (542)
..+..|++++.... .+..++...+.++....|+.. .++.|+..+. ..-.+++.|....|.|+.+....
T Consensus 405 --~cV~~Ll~ll~~~~--~~v~e~i~vik~IlrkyP~~~-------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I 473 (746)
T PTZ00429 405 --DCANLLLQIVDRRP--ELLPQVVTAAKDIVRKYPELL-------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI 473 (746)
T ss_pred --HHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHCccHH-------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence 45666777776532 234456777777766655421 2344443221 11124578888899999876432
Q ss_pred CCch-hhHHhhcC--CCCHHHHHHHHHHHHhhCCCChh
Q psy12594 411 ENPK-ELEQMLLG--NVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 411 ~~i~-~L~~lL~~--~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
+.-+ .|..+++. ..+..|+..++.+..++....+.
T Consensus 474 ~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 474 ENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred hhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence 2222 22233331 45667888888888888777764
No 48
>KOG1060|consensus
Probab=99.28 E-value=4e-09 Score=106.03 Aligned_cols=364 Identities=16% Similarity=0.190 Sum_probs=253.0
Q ss_pred HHHHhhhcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594 44 DLIVPLLADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 122 (542)
.-|.++|.|........|+ +++.-++ ...+. ...+|.+|+...+.+.++++..--.|.+.+...++...
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA--~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIA--KGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHh--cCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--
Confidence 3578889888777777777 4555566 33332 34788999999999999999999999999877765443
Q ss_pred hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA 202 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~ 202 (542)
=-+..+-+-|.++++.+|..|+++|..+-. + ++..-++-.+-++..++.+.+|..|+.++-.+-+-+++..
T Consensus 108 --LSIntfQk~L~DpN~LiRasALRvlSsIRv--p-----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 108 --LSINTFQKALKDPNQLIRASALRVLSSIRV--P-----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--h-----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 135788899999999999999888887642 1 1111113334456677889999999999999998888777
Q ss_pred HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCC
Q psy12594 203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHN 281 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~ 281 (542)
.++. +.+-.+|.+.++-+.-.|+.++-.+|-+.-+.. ++-.. +..+|.+-+++-+...+..|...+++.
T Consensus 179 ~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 179 DQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhc
Confidence 6554 778888899999999999999988876543222 24455 888888888888888888888877663
Q ss_pred ---hHHHHHHH-hcC------------------------CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594 282 ---LRLANLVV-LAG------------------------GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL 333 (542)
Q Consensus 282 ---~~~~~~~~-~~~------------------------~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 333 (542)
|....... +.| .+...-.++.+.++.+..+++.+...++..+.. .
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~ 321 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------T 321 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------H
Confidence 21100000 011 123334566778888999999999988754321 2
Q ss_pred CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-----------------HHH--------HHHHcCChHHHHHHHhc
Q psy12594 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-----------------NVT--------ALCEENVLSTLLSKITQ 388 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~--------~l~~~~~l~~L~~ll~~ 388 (542)
.+++.|+.+|++.+ .+|...+..+..++...+. +.+ .+++..-+..++.-++.
T Consensus 322 ~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 322 KIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 46788999998854 5777677777666533222 221 12344445555444432
Q ss_pred C--CCChHHHHHHHHHHHHHHhhC-----CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhh
Q psy12594 389 T--CVSDNLKSKCKNALNILIPKC-----ENPKELEQMLLGNVSEELLASILCAFAKILPCDPVA 446 (542)
Q Consensus 389 ~--~~~~~v~~~a~~aL~nl~~~~-----~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~ 446 (542)
. +++.++-..++.||+.+.... ..+..|+.++. +.|..|+..+.-.|..++..+|..
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Lls-shde~Vv~eaV~vIk~Llq~~p~~ 463 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLS-SHDELVVAEAVVVIKRLLQKDPAE 463 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHh-cccchhHHHHHHHHHHHHhhChHH
Confidence 1 112346667777787776543 23788999999 899999999999999999988753
No 49
>KOG0946|consensus
Probab=99.26 E-value=1.4e-08 Score=102.30 Aligned_cols=322 Identities=17% Similarity=0.231 Sum_probs=242.3
Q ss_pred ChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCH---
Q psy12594 126 DLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSP--- 199 (542)
Q Consensus 126 ~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~--- 199 (542)
.++.|+.-+.+.. ++-|..|+..|..+++ .+|..+...| +++|++.|+.+ +++....++.++.++..++.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 5677777666554 7889999999999986 6677777766 89999999875 69999999999999988652
Q ss_pred ---HH----------HHH-hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHH-hhchHH-HHHhhcCC
Q psy12594 200 ---EL----------AES-ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTIA-DGATTL-AVEHLTYP 262 (542)
Q Consensus 200 ---~~----------~~~-~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~~i~-L~~lL~~~ 262 (542)
+. .+. +...+.|..++..+...|-.+|..++..|.++-.+.+ +.++.+. ...++. ++.+|.+.
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds 178 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS 178 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh
Confidence 11 112 2246778889999998999999999999999987654 4555444 467888 99999999
Q ss_pred ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC---c-cchHHHHHHHhHhhcCChHHHHHHHhhCchHH
Q psy12594 263 HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG---G-YNSLPAIMALGYMSAQSEQIAEQIIELQGVGS 338 (542)
Q Consensus 263 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 338 (542)
.+.+|..++-.|..+++.++...+.+.=..++.+|...+..+. . -+...++..|.||-..+......+.+.+.+|.
T Consensus 179 rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~r 258 (970)
T KOG0946|consen 179 REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPR 258 (970)
T ss_pred hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHH
Confidence 9999999999999999999999887777789999999998753 2 37888999999999999999999999999999
Q ss_pred HHHhhcCCC--hh--------h--HHHHHHHHHHHhhcC-C-----hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHH
Q psy12594 339 LQTILQCPH--KE--------Q--LQVAAAWTLGQIGKH-S-----VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCK 400 (542)
Q Consensus 339 L~~ll~~~~--~~--------~--v~~~a~~~L~~l~~~-~-----~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~ 400 (542)
|..+|.... +. . -...++.++..++.. + ....+.+..++++..|+.++.++.-..+|+.++.
T Consensus 259 L~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesi 338 (970)
T KOG0946|consen 259 LLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESI 338 (970)
T ss_pred HHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHH
Confidence 997775321 10 0 122345555555432 1 1233456678999999999998866789999999
Q ss_pred HHHHHHHhhC------------CCch----h----hHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHH
Q psy12594 401 NALNILIPKC------------ENPK----E----LEQMLLGNVSEELLASILCAFAKILPCDPVARRSFV 451 (542)
Q Consensus 401 ~aL~nl~~~~------------~~i~----~----L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~ 451 (542)
.++++.++.+ ..+| . ++.+.....++..+..+++.+...+..+.+..+.|+
T Consensus 339 itvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 339 ITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred HHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence 9999997431 1122 2 223333133668888888888888877766555443
No 50
>KOG2759|consensus
Probab=99.26 E-value=3.5e-09 Score=99.61 Aligned_cols=317 Identities=14% Similarity=0.103 Sum_probs=223.4
Q ss_pred cHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-Hh------hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594 85 LVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-LI------EDKDLDSIISSLHDFDPDTRANAALALGGLAKDN 156 (542)
Q Consensus 85 ~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~~------~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 156 (542)
.+..++.++++ ..++....++..+..+.+.+..... +. .....+.++.+|..+++.+.+.+.++++.++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 45566777775 3466666777777776554433333 21 2235788999999999999988889998887533
Q ss_pred hHHH---HHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC--CCHHHHHHHH
Q psy12594 157 KHFA---ERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN--DEVNVKADAF 230 (542)
Q Consensus 157 ~~~~---~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~ 230 (542)
+... +.-+. ...|...+++ .++.-...|++||..+.. -++.|..++..+++..++..+.+ .+-.++.+.+
T Consensus 146 ~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 146 NCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred cccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 2211 11111 2334455555 557788889999999998 57789999989999999998842 3678999999
Q ss_pred HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCCh------HHHHHHHhcCCHHHHHHhhh
Q psy12594 231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNL------RLANLVVLAGGLDGLLRLID 302 (542)
Q Consensus 231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~------~~~~~~~~~~~i~~Lv~lL~ 302 (542)
.++|-|+-+. ...+.+...+.++ |..++++. .+.|.+-++.+++|+....+ +....++..++.+.+-.+..
T Consensus 222 fciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 222 FCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 9999998775 4667777789999 99999998 89999999999999997774 33344555555444444333
Q ss_pred c--CCccchHHHHH-------HHhHhhcC--------------Ch---------HHHHHHHhh--CchHHHHHhhcCCCh
Q psy12594 303 C--NGGYNSLPAIM-------ALGYMSAQ--------------SE---------QIAEQIIEL--QGVGSLQTILQCPHK 348 (542)
Q Consensus 303 ~--~~~~~~~~a~~-------~L~~l~~~--------------~~---------~~~~~~~~~--~~l~~L~~ll~~~~~ 348 (542)
. .|+++....-. -...|+.. +| +....+.+. .++..|+.+|+.+++
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D 380 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND 380 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence 3 23322211111 11111110 11 122223222 478999999999887
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 349 EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
+.+...||.-++.+..+.|+-...+.+.|+-..+++++.+++ ++||.+|..|+..++.
T Consensus 381 p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d--~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED--PEVRYHALLAVQKLMV 438 (442)
T ss_pred CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC--chHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999999985 5999999999887763
No 51
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.23 E-value=8.6e-09 Score=100.10 Aligned_cols=413 Identities=16% Similarity=0.139 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHHHHH-hcC------CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc
Q psy12594 11 DHYQRARLCFVQTMSA-FAD------KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER 83 (542)
Q Consensus 11 ~~~~~~r~~~~~~l~~-l~~------~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~ 83 (542)
++-..+|..++.+|.+ +-. .+..|..+ ++..+..-+++|.+++..|..+|.++.+..++-. ..+.+.
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm-~~ymE~ 262 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFM-QSYMEN 262 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4456678888888877 322 23333333 3345566778999999999999999994333333 355565
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-Hh----------------hcCChHHHHhhhcCC-------CH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LI----------------EDKDLDSIISSLHDF-------DP 139 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~----------------~~g~v~~Lv~lL~~~-------~~ 139 (542)
-......+.+++++.++...+..+...+|....+... .. -.+++|.|+.+|... +.
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 5666677889999999999999998777754322211 11 123789999999652 13
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH-HHHHhhhCCChHHHHHhh
Q psy12594 140 DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE-LAESASDCDVIPLLIKAL 218 (542)
Q Consensus 140 ~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~-~~~~~~~~~~i~~L~~ll 218 (542)
.+...|..||.-.+.. ..+.+++. ++..+-+-+++++..-++.++.+++.+..+..+ ....++ ..++|.+..++
T Consensus 343 n~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m 417 (858)
T COG5215 343 NPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEM 417 (858)
T ss_pred chhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhc
Confidence 4555666666655531 12333322 344444566778888999999999998875433 344455 78889999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH-hhcC--CChhHHHHHHHHHHHHhcCChHHHHH--HHhcC
Q psy12594 219 NNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE-HLTY--PHGLVQKNAATLLRDMCKHNLRLANL--VVLAG 292 (542)
Q Consensus 219 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~-lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~~--~~~~~ 292 (542)
.++..-++..++|+++.++.+-+.... ..+-++ .++ ++.. +.+.+..+++|...|+..|-+..... -.-..
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~ 494 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAK 494 (858)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence 988888999999999999876543222 222222 222 2221 25778889999999999886544311 11123
Q ss_pred CHHHHHHhhhc------CCccchHHHHHHHhHhhcCChHHHHHHHhh----------CchHHHHHhhcCCC---hhhHHH
Q psy12594 293 GLDGLLRLIDC------NGGYNSLPAIMALGYMSAQSEQIAEQIIEL----------QGVGSLQTILQCPH---KEQLQV 353 (542)
Q Consensus 293 ~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~~~~---~~~v~~ 353 (542)
..+.++.-|-+ .+...|..+..+|+.+...+++....++-. ..+..+-+.+..+. .++++.
T Consensus 495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqS 574 (858)
T COG5215 495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQS 574 (858)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 34444443322 334578888888988876655433222110 12222222232211 135566
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---------CCCchhhHHhhcCCC
Q psy12594 354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK---------CENPKELEQMLLGNV 424 (542)
Q Consensus 354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~---------~~~i~~L~~lL~~~~ 424 (542)
+-+..|..+....+.....+-+ .++..++++|.+.++ .-+-.....+++++... ..++|.|.+-|+ ..
T Consensus 575 N~~~vl~aiir~~~~~ie~v~D-~lm~Lf~r~les~~~-t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~ 651 (858)
T COG5215 575 NYIGVLEAIIRTRRRDIEDVED-QLMELFIRILESTKP-TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CT 651 (858)
T ss_pred HHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHhccCC-chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-ch
Confidence 6666666665544332222221 266788888887743 34666777777777532 346888888888 88
Q ss_pred CHHHHHHHHHHHHhhC
Q psy12594 425 SEELLASILCAFAKIL 440 (542)
Q Consensus 425 ~~~v~~~~l~~l~~ll 440 (542)
|..+...+.+.+..+.
T Consensus 652 d~~v~~~avglvgdla 667 (858)
T COG5215 652 DRFVLNSAVGLVGDLA 667 (858)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8888777777665553
No 52
>KOG0946|consensus
Probab=99.22 E-value=2.6e-08 Score=100.38 Aligned_cols=319 Identities=16% Similarity=0.213 Sum_probs=241.3
Q ss_pred cHHHHHHhhccC-CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCCh----
Q psy12594 85 LVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNK---- 157 (542)
Q Consensus 85 ~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~---- 157 (542)
.++.|++.+.+. -.+-|+.|+..|..++. ..+.-+...+++.|++.|+.+ |+++...++.++.++....+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 566777766653 37789999999988874 334444556789999999765 69999999999999875432
Q ss_pred ------------HHHHHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhh-hCCChHHHHHhhcCCC
Q psy12594 158 ------------HFAERIVQC-GALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESAS-DCDVIPLLIKALNNDE 222 (542)
Q Consensus 158 ------------~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~-~~~~i~~L~~ll~~~~ 222 (542)
...+.+++. +.|..++.++...+-.+|..+...|.++.++- ++.+..+. ..-+|..++.+|.+..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 123334433 77899999999999999999999999987754 44444443 4668999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC---C-hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHH
Q psy12594 223 VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP---H-GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGL 297 (542)
Q Consensus 223 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~---~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 297 (542)
..+|-.++..|..+.++++..++.+.-.++.. |++++... | .-|...|...|-||-+++..+...+.+.+.+|+|
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 99999999999999999988888888889999 99999865 3 3688899999999999999999989999999999
Q ss_pred HHhhhc---CCc-----c-----chHHHHHHHhHhhc-CCh-----HHHHHHHhhCchHHHHHhhcCC-ChhhHHHHHHH
Q psy12594 298 LRLIDC---NGG-----Y-----NSLPAIMALGYMSA-QSE-----QIAEQIIELQGVGSLQTILQCP-HKEQLQVAAAW 357 (542)
Q Consensus 298 v~lL~~---~~~-----~-----~~~~a~~~L~~l~~-~~~-----~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~ 357 (542)
..+|.- .+. . -...++.++..++. +++ .....+..++++..|..++.++ -..+|+..+..
T Consensus 260 ~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesii 339 (970)
T KOG0946|consen 260 LKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESII 339 (970)
T ss_pred HhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHH
Confidence 988754 231 1 12234445555543 221 2235677789999999999886 23689999999
Q ss_pred HHHHhhcCChHHHHHHHHc---------CChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594 358 TLGQIGKHSVDNVTALCEE---------NVLSTLLSKITQTCVSDNLKSKCKNALNIL 406 (542)
Q Consensus 358 ~L~~l~~~~~~~~~~l~~~---------~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl 406 (542)
++++...++..+...+.+. ..+-.++..+.++...+..|-.+.+++..+
T Consensus 340 tvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~ 397 (970)
T KOG0946|consen 340 TVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSY 397 (970)
T ss_pred HHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 9999999988777776543 133345555555555678888888888776
No 53
>KOG1062|consensus
Probab=99.21 E-value=6.9e-09 Score=104.81 Aligned_cols=355 Identities=14% Similarity=0.107 Sum_probs=204.1
Q ss_pred cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHH
Q psy12594 51 ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI 130 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L 130 (542)
++.+.-++..|+.+|++++ .. +. ..+..|.+.+++++.++.+|+.|+.+..++-...|+..+ ..++..
T Consensus 117 ~s~nq~vVglAL~alg~i~--s~-Em-----ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----~f~~~~ 184 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNIC--SP-EM-----ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----HFVIAF 184 (866)
T ss_pred cCCCeeehHHHHHHhhccC--CH-HH-----hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH----HhhHHH
Confidence 4566778888999999998 32 22 234678888999999999999999999998877776665 346778
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC---------------CCHhHHHHHHHHHHHHh
Q psy12594 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS---------------PQLSLKHAAAFALDGIV 195 (542)
Q Consensus 131 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~nl~ 195 (542)
..+|.+.+..+...++..+..++..+++....+-+ +++.|+..|+. ++|-+|...++.|+-+.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 88888888888888888888888777765555554 56666666642 35889999999999999
Q ss_pred cCCHHHHHHhhhCCChHHHHHhhcCCC------HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHH
Q psy12594 196 KHSPELAESASDCDVIPLLIKALNNDE------VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQK 268 (542)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~ 268 (542)
.++++..+.+. ..|.+...+.+ ..+...++.++..|-...+ .+. -++. |-.+|.+.|..+|+
T Consensus 263 q~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-Lrv-----lainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 263 QNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-LRV-----LAINILGKFLLNRDNNIRY 331 (866)
T ss_pred CCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCch-HHH-----HHHHHHHHHhcCCccceee
Confidence 98776666554 34444443221 1244444444444433321 222 2334 44555555555555
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh
Q psy12594 269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK 348 (542)
Q Consensus 269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 348 (542)
.++..|......++..++.-. ..++++|+++|..++..|+..+..|...+. .. ..+..|+.+|... +
T Consensus 332 vaLn~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~lvn~~N--v~-----~mv~eLl~fL~~~-d 398 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYALVNESN--VR-----VMVKELLEFLESS-D 398 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH-----HHHHHHHHHHHhc-c
Confidence 555555555544444333221 134555555555555555555544433211 11 1222334444432 2
Q ss_pred hhHHHHHHHHHHHhhcCC-hHHH---H---H-------HHHcCChHHHHHHHhcC-----------------------CC
Q psy12594 349 EQLQVAAAWTLGQIGKHS-VDNV---T---A-------LCEENVLSTLLSKITQT-----------------------CV 391 (542)
Q Consensus 349 ~~v~~~a~~~L~~l~~~~-~~~~---~---~-------l~~~~~l~~L~~ll~~~-----------------------~~ 391 (542)
++.+...+.-+..++... |+.+ + . ++..+++..++.++.+. -+
T Consensus 399 ~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is 478 (866)
T KOG1062|consen 399 EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDIS 478 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhh
Confidence 334333333333332110 1000 0 0 01112223333333322 11
Q ss_pred ChHHHHHHHHHHHHHHh---h------------CCCchhhHHhhcC-CCCHHHHHHHHHHHHhhCCCC
Q psy12594 392 SDNLKSKCKNALNILIP---K------------CENPKELEQMLLG-NVSEELLASILCAFAKILPCD 443 (542)
Q Consensus 392 ~~~v~~~a~~aL~nl~~---~------------~~~i~~L~~lL~~-~~~~~v~~~~l~~l~~ll~~~ 443 (542)
.+.+..-|.|+|+.... . .+.+..|+.++.. .++..+..+++.++.++-...
T Consensus 479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF 546 (866)
T ss_pred hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence 23456678888887641 1 1236677777763 456788889999998886543
No 54
>KOG2160|consensus
Probab=99.19 E-value=2.6e-08 Score=92.77 Aligned_cols=187 Identities=18% Similarity=0.252 Sum_probs=163.2
Q ss_pred cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHH
Q psy12594 51 ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDS 129 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~ 129 (542)
.+.+.+-+..|+.-|..++ ++-++...+...|++..++..+.+.+..+|..|+++++..+..+|..+. +++.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lv--e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELV--EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHH--HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 4567888999999999999 8888889999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594 130 IISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAAFALDGIVKHSPELAESAS 206 (542)
Q Consensus 130 Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 206 (542)
|+..+.+.+ ..+|..|+.++..+.+.++.....+...++...|...+++ .+..+++.++..+..+..........+.
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999998665 6788999999999999999989999999889999999999 4588999999999999987766666666
Q ss_pred hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594 207 DCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239 (542)
Q Consensus 207 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 239 (542)
..++...+..+....+.++.+.++.++..+...
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 666667777777777888888888777666543
No 55
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.18 E-value=1.5e-08 Score=98.50 Aligned_cols=340 Identities=15% Similarity=0.065 Sum_probs=214.5
Q ss_pred HhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh----cc-CCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 47 VPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL----TK-QNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L----~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
.+-|++..|.....|+..+..++ ..+ .-.+..|.+++.+ .. +....+..++.++++.|........+
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA--~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIA--RME------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHH--Hhh------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 34456666777777777777776 221 1133444444443 33 44678899999999998664331112
Q ss_pred hhc-CChHHHHh-hhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHH----cCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594 122 IED-KDLDSIIS-SLHD-FDPDTRANAALALGGLAKDNKHFAERIVQ----CGALPPLVQILASPQLSLKHAAAFALDGI 194 (542)
Q Consensus 122 ~~~-g~v~~Lv~-lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~ll~~~~~~~~~~a~~~L~nl 194 (542)
... .++-.++. -++. ++..+|..++.+|.+-.. ..+..+-. .-+++..++.-+.++.+++..|..||..|
T Consensus 172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ki 248 (858)
T COG5215 172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKI 248 (858)
T ss_pred HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHH
Confidence 222 23333333 3333 357899999999887321 11111111 12355666777888999999999999999
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH----------------HhhchHH-HHH
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI----------------ADGATTL-AVE 257 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~----------------~~~~~i~-L~~ 257 (542)
..-.-+......+........+.++++++++...++..-+.+|....+..-.. .-..++| |++
T Consensus 249 m~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~ 328 (858)
T COG5215 249 MMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLS 328 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHH
Confidence 88555555555555555667778889999999999988888887543211111 1135789 999
Q ss_pred hhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594 258 HLTYP-------HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI 330 (542)
Q Consensus 258 lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 330 (542)
+|... +-.+...|..||--++....+. +.+ .++..+-+-++++++.-+..|+.++|.+..+..+.+..-
T Consensus 329 LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~ 404 (858)
T COG5215 329 LLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK 404 (858)
T ss_pred HHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence 99763 2346666777776665322211 222 233444456778899999999999999988766655555
Q ss_pred HhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCCh----HHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594 331 IELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVL----STLLSKITQTCVSDNLKSKCKNALNIL 406 (542)
Q Consensus 331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l----~~L~~ll~~~~~~~~v~~~a~~aL~nl 406 (542)
+-...+|.+.....++ .-.++..++|+++.++.+-++ .+-..+-+ ...+.-+.+. +.+-..++|+..|+
T Consensus 405 ~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~---p~~~~ncsw~~~nl 477 (858)
T COG5215 405 IVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDC---PFRSINCSWRKENL 477 (858)
T ss_pred hHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhcc---chHHhhhHHHHHhH
Confidence 5568899999888863 458899999999999643222 11122322 2223334432 46788999999999
Q ss_pred Hh
Q psy12594 407 IP 408 (542)
Q Consensus 407 ~~ 408 (542)
..
T Consensus 478 v~ 479 (858)
T COG5215 478 VD 479 (858)
T ss_pred HH
Confidence 64
No 56
>KOG1062|consensus
Probab=99.12 E-value=3.2e-08 Score=100.17 Aligned_cols=367 Identities=14% Similarity=0.201 Sum_probs=210.7
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
...|...++++..++.+|..|+.+..++- .. ++..+. +++..-++|.+.+..+-..++..+..+|..+++..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~i--rK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFI--RKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHH--HcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH
Confidence 34677889999999999999999888887 44 555333 44566666776677777777777777777665555
Q ss_pred h-HhhcCChHHHHhhhcC---------------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc------------C-ChH
Q psy12594 120 G-LIEDKDLDSIISSLHD---------------FDPDTRANAALALGGLAKDNKHFAERIVQC------------G-ALP 170 (542)
Q Consensus 120 ~-~~~~g~v~~Lv~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~------------g-~i~ 170 (542)
. +.+ .++.|+..|++ .||.++...++.|.-+...++...+.+-+- + +-.
T Consensus 215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnA 292 (866)
T KOG1062|consen 215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNA 292 (866)
T ss_pred HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhH
Confidence 4 433 55555555431 257777777777777766555444433210 0 001
Q ss_pred HHHHhcc-----CCCHhHHHHHHHHHHHHhcCCHHHHHHhh----------hCCCh----HHHHHhhcCCCHHHHHHHHH
Q psy12594 171 PLVQILA-----SPQLSLKHAAAFALDGIVKHSPELAESAS----------DCDVI----PLLIKALNNDEVNVKADAFL 231 (542)
Q Consensus 171 ~L~~ll~-----~~~~~~~~~a~~~L~nl~~~~~~~~~~~~----------~~~~i----~~L~~ll~~~~~~~~~~a~~ 231 (542)
.|.+..+ .++..+|..|+-+|+.+-.....+.+.+. +..++ ..++.+|+++|..+++.|+.
T Consensus 293 ILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 1111111 12345555555555555443222221110 11111 46778888888888888888
Q ss_pred HHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594 232 CLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLRLANLVVLAGGLDGLLRLIDCNGGYNS 309 (542)
Q Consensus 232 ~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 309 (542)
.+..|...+. .+ ..+. |+..|...+++.+..++.-+..++.. .|+.... ++.+...+.....-++
T Consensus 373 Ls~~lvn~~N-v~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~ 439 (866)
T KOG1062|consen 373 LSYALVNESN-VR------VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVN 439 (866)
T ss_pred HHHHHhcccc-HH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccc
Confidence 8888876642 33 3455 88888888888888888877777643 3443332 3445555555444444
Q ss_pred HHHHHHHhHhhcCC-hH----HHHHHHhhCchHHHHH-hhcCCChhhHHHHHHHHHHHhhc----C-ChHHHHHHHHcCC
Q psy12594 310 LPAIMALGYMSAQS-EQ----IAEQIIELQGVGSLQT-ILQCPHKEQLQVAAAWTLGQIGK----H-SVDNVTALCEENV 378 (542)
Q Consensus 310 ~~a~~~L~~l~~~~-~~----~~~~~~~~~~l~~L~~-ll~~~~~~~v~~~a~~~L~~l~~----~-~~~~~~~l~~~~~ 378 (542)
..+...+..+..+. ++ ....+.. .+.. .+...+.+.+...|.|+||..+. + +.+....+-++.+
T Consensus 440 ~dv~~nll~LIa~~~~e~~~y~~~rLy~-----a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdi 514 (866)
T KOG1062|consen 440 DDVVNNLLRLIANAFQELHEYAVLRLYL-----ALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDI 514 (866)
T ss_pred hhhHHHHHHHHhcCCcchhhHHHHHHHH-----HHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHH
Confidence 44443333333221 11 1111111 1111 01112234667789999998751 1 1122223345678
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC-chhhHHhh---cCCCCHHHHHHHHH
Q psy12594 379 LSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN-PKELEQML---LGNVSEELLASILC 434 (542)
Q Consensus 379 l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~-i~~L~~lL---~~~~~~~v~~~~l~ 434 (542)
+..+..++.+...+..+|..|..||..|..+... .+.+.+++ ..+.+.++.+.+.+
T Consensus 515 vd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 515 VDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhcccccHHHHHHHHH
Confidence 8888999988877778898999999998765433 33333333 32456677776654
No 57
>KOG2759|consensus
Probab=99.12 E-value=5.7e-08 Score=91.65 Aligned_cols=320 Identities=15% Similarity=0.137 Sum_probs=222.6
Q ss_pred CchHHHHhhhcCCC-hHHHHHHHHHHHHhHccCChHHHHHHH-------hcCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy12594 41 NVVDLIVPLLADKV-PSIQHAALATLGKLMCAKHVDIRQEVL-------ERNLVALVLKDLTKQNKHYKKTALHMLTCVA 112 (542)
Q Consensus 41 g~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~~i~-------~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~ 112 (542)
..+..++.|++..+ ++.....+..+..+. ..+..+..+. +.......+.+|..++..+...+.+++..++
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmL--s~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDML--SEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHH--hhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 45667777776543 455556666666666 3222211111 2233667888899999999988999999887
Q ss_pred cCChhhhhHhhc-CChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHH
Q psy12594 113 QQDERCAGLIED-KDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAA 188 (542)
Q Consensus 113 ~~~~~~~~~~~~-g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~ 188 (542)
......-...+. =....|-..+++ .+++....+++||..+.. -+++|..++...++..++..+.+ .+-.+|...+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 543222111000 012334444554 557777888899999987 56778999998889999998843 2478999999
Q ss_pred HHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCh------hhHHHHHhhchHHHHHhhcC
Q psy12594 189 FALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSP------SLASTIADGATTLAVEHLTY 261 (542)
Q Consensus 189 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~L~~lL~~ 261 (542)
.++.-|+. +|...+.+...+.++.|..++++. ...+.+-++.++.|+....+ +....++..++.+-++.|..
T Consensus 222 fciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 222 FCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 99999998 666777777789999999999965 56799999999999998874 33455666666664444443
Q ss_pred C---ChhHHHHHHHHHHHH-------hcC--------------C---------hHHHHHHHh--cCCHHHHHHhhhcCC-
Q psy12594 262 P---HGLVQKNAATLLRDM-------CKH--------------N---------LRLANLVVL--AGGLDGLLRLIDCNG- 305 (542)
Q Consensus 262 ~---~~~v~~~a~~~L~~L-------~~~--------------~---------~~~~~~~~~--~~~i~~Lv~lL~~~~- 305 (542)
. |+++....-..-..| +.. + .+++..+-+ ...+..|+.+|...+
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D 380 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND 380 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence 3 666554433222222 111 1 122332322 236788899998866
Q ss_pred ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594 306 GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365 (542)
Q Consensus 306 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 365 (542)
|.+..-|+.-||...+..|+....+.+.|+-..+++++.++ ++.|+..|+.|+..+..+
T Consensus 381 p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 66788899999999999999999999999999999999995 579999999998887543
No 58
>KOG2160|consensus
Probab=99.09 E-value=2e-08 Score=93.47 Aligned_cols=184 Identities=20% Similarity=0.230 Sum_probs=152.2
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI 175 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 175 (542)
.+.+-+..|+.-|..++..=+....++..|++..++..+++.++.+|+.|+|+|+..+..+|..++.+++.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 55777888888888887554344449999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhch
Q psy12594 176 LASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN--DEVNVKADAFLCLADIAKDSPSLASTIADGAT 252 (542)
Q Consensus 176 l~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 252 (542)
+.+++ ..++..|+.+++.+.++.+.....+...++...|...+++ .+..+++.++..+.++..........+...+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 98764 6788999999999999998889999889999999999998 57889999999999999876544443433444
Q ss_pred HH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 253 TL-AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 253 i~-L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
.. +..+....+.++.+.+..++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 44 5566556688888888777665553
No 59
>KOG1059|consensus
Probab=99.08 E-value=3e-07 Score=92.05 Aligned_cols=215 Identities=14% Similarity=0.154 Sum_probs=150.6
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
-+-+++||.+..|-+|..|+..+.+++ .. ++.. ...+|.|+.-|.++++.++..|+.+++.|+..+|..-.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvF--LkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVF--LKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHH--HhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 345677788888888888888888887 33 3331 23678888888888888888888888888877654333
Q ss_pred hhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHH--HHhcC
Q psy12594 122 IEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALD--GIVKH 197 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~--nl~~~ 197 (542)
..-|.+.++|-+. +-.+....+..+++|+--.|...+.+ ++++..++.+.. .++...|..++. ++..+
T Consensus 218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL-----ieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL-----IEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh-----hhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 2456677777543 45555666777777776666655554 778888888765 566666666553 33433
Q ss_pred CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
.++....+ .-+++.|-.++.+.|+.++.-++-+++.+....+.... .--. ++.+|.+.|+.+|-.|+..|..
T Consensus 290 ~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 290 MSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHHH
Confidence 22211111 12346777788899999999999999999988765443 2345 7899999999999999999998
Q ss_pred HhcC
Q psy12594 277 MCKH 280 (542)
Q Consensus 277 L~~~ 280 (542)
+...
T Consensus 363 mVsk 366 (877)
T KOG1059|consen 363 MVSK 366 (877)
T ss_pred Hhhh
Confidence 8743
No 60
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.05 E-value=3.1e-08 Score=95.64 Aligned_cols=227 Identities=18% Similarity=0.222 Sum_probs=162.8
Q ss_pred chHHHHhhhcC--CChHHHHHHHHHHHHhHccCC-hHHHHHHHh------cCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy12594 42 VVDLIVPLLAD--KVPSIQHAALATLGKLMCAKH-VDIRQEVLE------RNLVALVLKDLTKQNKHYKKTALHMLTCVA 112 (542)
Q Consensus 42 ~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~------~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~ 112 (542)
....++.+|+. .++++....+..+..+. .+ +...+.+.. ...+.++++++.+++..++..++.+|..+.
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll--~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLL--SDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHH--H-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHH--hcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35566666653 67899999999999998 44 333333333 236788999888999999999999999998
Q ss_pred cCChhhhhHhhcCChHHHHhhhcC----CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc------cC-CCH
Q psy12594 113 QQDERCAGLIEDKDLDSIISSLHD----FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL------AS-PQL 181 (542)
Q Consensus 113 ~~~~~~~~~~~~g~v~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll------~~-~~~ 181 (542)
...+........+.++.+++.+.+ .+..++..++.+|.++.. .+.+|..+.+.++++.+..++ .. .+.
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 765444442224567778877765 345677889999999986 788899999999999999999 22 238
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh-hHHHHHhhchHHHHHhh
Q psy12594 182 SLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPS-LASTIADGATTLAVEHL 259 (542)
Q Consensus 182 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~L~~lL 259 (542)
.++++++.+++-|+. +++....+...+.++.|..+++. ...++.+-++.+|.|+....++ +...++..++++++..|
T Consensus 213 Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 899999999999999 78888889888999999999984 4788999999999999987654 77788888888855555
Q ss_pred cCC---ChhHHHHHHH
Q psy12594 260 TYP---HGLVQKNAAT 272 (542)
Q Consensus 260 ~~~---~~~v~~~a~~ 272 (542)
... |+++....-.
T Consensus 292 ~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 292 SERKWSDEDLTEDLEF 307 (312)
T ss_dssp HSS--SSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHH
Confidence 443 7887765543
No 61
>KOG4413|consensus
Probab=99.03 E-value=1.5e-06 Score=79.29 Aligned_cols=361 Identities=15% Similarity=0.126 Sum_probs=238.0
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-h--HH--HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-V--DI--RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD 115 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~--~~--~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~ 115 (542)
+..|.|-.-|..++..++..++..++.+. ++ + .. ...++..+.++.+++++..++.++...|...+.+++...
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcil--EdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCIL--EDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP 159 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHH--hcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH
Confidence 34455555566788899999999999998 65 2 22 234457899999999999999999999999999999776
Q ss_pred hhhhhHhhcCChHHH--HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHH
Q psy12594 116 ERCAGLIEDKDLDSI--ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALD 192 (542)
Q Consensus 116 ~~~~~~~~~g~v~~L--v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~ 192 (542)
.....+.+......+ .++-...+.-.|......+..+.+-++......-++|.+..|..=|+. .+.-++..++....
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 555556655554433 334344455667777778888888888888888899999999888887 56778888888888
Q ss_pred HHhcCCHHHHHHhhhCCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChh---hHHHHHh--hchHH-HHHhhcCCCh
Q psy12594 193 GIVKHSPELAESASDCDVIPLLIKALNN--DEVNVKADAFLCLADIAKDSPS---LASTIAD--GATTL-AVEHLTYPHG 264 (542)
Q Consensus 193 nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~--~~~i~-L~~lL~~~~~ 264 (542)
.++. ....++.+.+.|.|+.+..++.. ++|.-.-.+....+.+-....- ..+.+.+ -..+. .+.+....|+
T Consensus 240 eLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDp 318 (524)
T KOG4413|consen 240 ELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDP 318 (524)
T ss_pred HHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCc
Confidence 8887 55677888889999999999983 3554444455555554433210 1111222 12344 5677778899
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhcC--CHHHHHHhhhcCCcc-chHHHHHHHhHhhcC---ChH----------HHH
Q psy12594 265 LVQKNAATLLRDMCKHNLRLANLVVLAG--GLDGLLRLIDCNGGY-NSLPAIMALGYMSAQ---SEQ----------IAE 328 (542)
Q Consensus 265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~--~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~---~~~----------~~~ 328 (542)
+....|+.++..|..+ .+..+.+...| ...+++.-..+.+.. -+..++++|.+++.. .++ .+.
T Consensus 319 daieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrc 397 (524)
T KOG4413|consen 319 DAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRC 397 (524)
T ss_pred hHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHH
Confidence 9999999999999754 44445455444 355566555554443 567788888888742 111 111
Q ss_pred HHHh-------hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcC-CCChHHHHHHH
Q psy12594 329 QIIE-------LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT-CVSDNLKSKCK 400 (542)
Q Consensus 329 ~~~~-------~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~~~v~~~a~ 400 (542)
.+.+ ..-+..+..+++.+ -++++-++.+++..++...=.....+.+.+++..+.+--... ....+.|.+++
T Consensus 398 lifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYecc 476 (524)
T KOG4413|consen 398 LIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECC 476 (524)
T ss_pred HHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHH
Confidence 1111 13345566777764 468999999999999654333333333556666555433322 11234556666
Q ss_pred HHHHHH
Q psy12594 401 NALNIL 406 (542)
Q Consensus 401 ~aL~nl 406 (542)
.||.+-
T Consensus 477 KAiaea 482 (524)
T KOG4413|consen 477 KAIAEA 482 (524)
T ss_pred HHHHHH
Confidence 666653
No 62
>KOG0213|consensus
Probab=98.93 E-value=1.7e-07 Score=93.98 Aligned_cols=349 Identities=16% Similarity=0.111 Sum_probs=209.3
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCC--HHHHHHHHHHHHHHhcC--Chh
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQN--KHYKKTALHMLTCVAQQ--DER 117 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~--~~~~~~a~~~L~~l~~~--~~~ 117 (542)
+..++.=++++.+..|.-.+.+..++.+.-. .+. ..-.+...+..++..+.+++ ..+-.....++.+-... .+.
T Consensus 718 v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di-derleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy 796 (1172)
T KOG0213|consen 718 VSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI-DERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY 796 (1172)
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence 3444555677778777777777777763222 111 11112334445555555433 22333344343332111 111
Q ss_pred hhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH--HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHh
Q psy12594 118 CAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF--AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195 (542)
Q Consensus 118 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~ 195 (542)
.. .++..++..|++..+.+|..|+..++.++.--..+ -+.+...|. .|.+.|..+.+++.-..+.++..|.
T Consensus 797 lp-----qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 797 LP-----QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred hH-----HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHH
Confidence 11 24567788899999999999999999887321111 233334443 4788888888888877777776665
Q ss_pred cCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594 196 KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL---ASTIADGATTL-AVEHLTYPHGLVQKNAA 271 (542)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~-L~~lL~~~~~~v~~~a~ 271 (542)
..-.-....---.+.+|.|..+|++.+..++++++..++.+|...++. ++.+ .+.- |+++|+..+.++|+++.
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~ 946 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAV 946 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 421100011111578899999999999999999999999999987753 3333 3455 99999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594 272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQL 351 (542)
Q Consensus 272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 351 (542)
..+..+++.- --..++..|+.-|+..+-..+....-+|+-.+..+.. ..++|.|++=-.. ++..+
T Consensus 947 nTfG~IakaI-------GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrt-Pe~nV 1011 (1172)
T KOG0213|consen 947 NTFGYIAKAI-------GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRT-PEANV 1011 (1172)
T ss_pred hhhhHHHHhc-------CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccC-chhHH
Confidence 9999998632 1112344555555555444444333344333322211 1466666665555 34577
Q ss_pred HHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC---CCchhhHHhhc
Q psy12594 352 QVAAAWTLGQIGKHSVDN-VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC---ENPKELEQMLL 421 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~---~~i~~L~~lL~ 421 (542)
|.-.+++++.+...-.+. ...+ .-+.|.|-+.|.+.+ .--|..|+.++..+.-.+ +....++.||+
T Consensus 1012 QnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDrD--~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN 1081 (1172)
T KOG0213|consen 1012 QNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRD--LVHRQTAMNVIKHLALGVPGTGCEDALIHLLN 1081 (1172)
T ss_pred HHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhcccc--HHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHH
Confidence 777777777664321111 1111 235688888888874 366778888888886543 34555555555
No 63
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.92 E-value=9.4e-08 Score=92.28 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=159.0
Q ss_pred hHHHHHhccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhhh------CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594 169 LPPLVQILAS--PQLSLKHAAAFALDGIVKHSPELAESASD------CDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 169 i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
...++.+|+. ++.++.+.++..+..+...++.....+.. .....++++++..+|..++..++..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 4455555543 46889999999999999988766555543 225788888898899999999999999999877
Q ss_pred hhhHHHHHhhchHH-HHHhhcCC----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh-----c--CCccc
Q psy12594 241 PSLASTIADGATTL-AVEHLTYP----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID-----C--NGGYN 308 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-----~--~~~~~ 308 (542)
+....... .+.++ +++.+.+. +..++..++.+|.+|. ..+.....+.+.++++.+...+. + .+..+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54433322 45667 77777653 5667899999999998 45556666778999999999992 2 22346
Q ss_pred hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHHHh
Q psy12594 309 SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-NVTALCEENVLSTLLSKIT 387 (542)
Q Consensus 309 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~ 387 (542)
+..++.++.-++ .+++....+.+.+.++.|.++++....+.+.+-+..++.|+....++ ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 778888888664 55777788888899999999999988889999999999999877654 7777888888888777666
Q ss_pred cCCCChHHHHHHH
Q psy12594 388 QTCVSDNLKSKCK 400 (542)
Q Consensus 388 ~~~~~~~v~~~a~ 400 (542)
..-.++|+...-.
T Consensus 294 rk~~Dedl~edl~ 306 (312)
T PF03224_consen 294 RKWSDEDLTEDLE 306 (312)
T ss_dssp S--SSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5545666766443
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.90 E-value=3.1e-07 Score=90.55 Aligned_cols=242 Identities=17% Similarity=0.064 Sum_probs=171.8
Q ss_pred CCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 40 LNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 40 ~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
..+++.++..+. ++++.++..++.++.... ....+..+++.|.+.++.++..++..|+.+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~------------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE------------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC------------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-----
Confidence 346777888884 566777776666554333 11237888999998888899999988876542
Q ss_pred hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
....+.|+.+|.+.++.+|..++.++..... ...+.+..+|+++++.++..|+.+|+.+..
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGELPR-- 176 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence 2467889999999999999888776665322 225678888999999999999999998876
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
...++.|...+.+.++.+|..+++++..+.. + .... +..+...........+...+...
T Consensus 177 ---------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 177 ---------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 4566778888999999999999999977633 2 2233 44444444433333333333322
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 357 (542)
.. ...++.|..+++.+. ++..++.++|.+... ..++.|+..+... .++..|..
T Consensus 237 --~~---------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~---~~aR~A~e 289 (410)
T TIGR02270 237 --GG---------PDAQAWLRELLQAAA--TRREALRAVGLVGDV-----------EAAPWCLEAMREP---PWARLAGE 289 (410)
T ss_pred --Cc---------hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----------chHHHHHHHhcCc---HHHHHHHH
Confidence 11 245667788888765 899999999976433 5788888888763 48999999
Q ss_pred HHHHhhc
Q psy12594 358 TLGQIGK 364 (542)
Q Consensus 358 ~L~~l~~ 364 (542)
++..|+-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999953
No 65
>KOG1789|consensus
Probab=98.89 E-value=8.1e-07 Score=92.23 Aligned_cols=355 Identities=15% Similarity=0.158 Sum_probs=225.4
Q ss_pred HHHHHHHhcC-CCCchHHHHh----CCchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594 20 FVQTMSAFAD-KPSTIHFLKD----LNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL 93 (542)
Q Consensus 20 ~~~~l~~l~~-~~~~~~~l~~----~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L 93 (542)
.+.+|.|+-+ +|+....|.. -|-.+.+..++.+ .++.++..|+..+..+. .+.++.+.+...+.+..|+.+|
T Consensus 1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T--an~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT--ANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh--cccHHHHHHHhhhHHHHHHHHH
Confidence 4667777766 6655554432 3667777888865 57899999999999999 8888999999999888888887
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCC---hHHHHHHHHcCCh
Q psy12594 94 TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDN---KHFAERIVQCGAL 169 (542)
Q Consensus 94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i 169 (542)
++-|..|..++.+|..+++...-...-.++|++..+..++... .+..|.+++..++.+..+. |..+-.+++. .-
T Consensus 1823 -HS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kF-LP 1900 (2235)
T KOG1789|consen 1823 -HSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKF-LP 1900 (2235)
T ss_pred -hcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHh-ch
Confidence 4567889999999999997775555578889888888887654 5899999999999987532 2222222211 01
Q ss_pred HHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH------HHhhhCCChHH-HHHhhcC--CCHH----HHHHHHH-----
Q psy12594 170 PPLVQILASPQLSLKHAAAFALDGIVKHSPELA------ESASDCDVIPL-LIKALNN--DEVN----VKADAFL----- 231 (542)
Q Consensus 170 ~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~------~~~~~~~~i~~-L~~ll~~--~~~~----~~~~a~~----- 231 (542)
..++..+++. | +++..++..-.. +|+.. ..+ ++.+.. ..++.+. .++. +-++.+.
T Consensus 1901 ~~f~d~~RD~-P---EAaVH~fE~T~E-nPELiWn~~~r~kv--S~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~ 1973 (2235)
T KOG1789|consen 1901 EIFADSLRDS-P---EAAVHMFESTSE-NPELIWNEVTRQKV--SGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEAD 1973 (2235)
T ss_pred HHHHHHHhcC-H---HHHHHHHhccCC-CcccccCHhHHHHH--HHHHHHHHHHHHHHhccCCcccccCchhhcchhhhc
Confidence 2233344432 2 444444443333 33221 111 111211 1122211 0110 0011000
Q ss_pred --------HHHHHhcCCh---hhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHH
Q psy12594 232 --------CLADIAKDSP---SLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGL 297 (542)
Q Consensus 232 --------~L~~l~~~~~---~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~L 297 (542)
.+..+..... ...+.+. .+.++ +.+++..+ ..........++..|.++.|..+..+-.-|.+|.+
T Consensus 1974 ~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL-~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~ 2052 (2235)
T KOG1789|consen 1974 KECAVGGSINREFVVGPGFNLRHPKLFL-TELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKF 2052 (2235)
T ss_pred cCcccchhhhHHHhhCCCCcccCHHHHH-HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHH
Confidence 0111111100 0111222 25666 77777766 34455555666777778888888777777999999
Q ss_pred HHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC-hHHHHHHHHc
Q psy12594 298 LRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS-VDNVTALCEE 376 (542)
Q Consensus 298 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~ 376 (542)
+..+...+..+-..|++.|+.|+.+ .-.++.+.....+..++..+....+ ..-.|+.+|-.+...+ .+.....++.
T Consensus 2053 ~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~~--~~GLA~EalkR~~~r~~~eLVAQ~LK~ 2129 (2235)
T KOG1789|consen 2053 CTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQPS--LMGLAAEALKRLMKRNTGELVAQMLKC 2129 (2235)
T ss_pred HHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcch--HHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 9999999988889999999999754 4556666666777778888877543 4446888887776543 4556667788
Q ss_pred CChHHHHHHHhcC
Q psy12594 377 NVLSTLLSKITQT 389 (542)
Q Consensus 377 ~~l~~L~~ll~~~ 389 (542)
|.+|.|+.+|...
T Consensus 2130 gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2130 GLVPYLLQLLDSS 2142 (2235)
T ss_pred CcHHHHHHHhccc
Confidence 8889988888754
No 66
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.85 E-value=8.3e-07 Score=87.56 Aligned_cols=240 Identities=19% Similarity=0.138 Sum_probs=172.9
Q ss_pred CcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594 84 NLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162 (542)
Q Consensus 84 ~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (542)
..++.++..|. .++..++..++..+... .. ..++..|+..|.+.++.++..++.+|+.+-. +
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~----- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--ED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R----- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h-----
Confidence 35677888885 46677777665554322 11 1248899999999999999999999987643 1
Q ss_pred HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
...+.|+.+++++++.++..++.+++.... ...+.+..++++.++.++..++.+|+.+...
T Consensus 117 ----~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 117 ----QAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ----HHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 237889999999999999988877776332 2346888999999999999999999988654
Q ss_pred hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
..++ |...+.+.++.|+..+++++..+-. + ...+.+..+..............++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~-- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA-- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC--
Confidence 3455 7788899999999999999977642 2 2233444444444444444444444332
Q ss_pred CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHH
Q psy12594 322 QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKN 401 (542)
Q Consensus 322 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~ 401 (542)
+.+ ..++.|..+++.+ .++..++++++.+ +++. .++.|+..+.+. .++..|..
T Consensus 237 ~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~l--g~p~---------av~~L~~~l~d~----~~aR~A~e 289 (410)
T TIGR02270 237 GGP---------DAQAWLRELLQAA---ATRREALRAVGLV--GDVE---------AAPWCLEAMREP----PWARLAGE 289 (410)
T ss_pred Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHc--CCcc---------hHHHHHHHhcCc----HHHHHHHH
Confidence 211 4677788888773 4899999999988 4444 678899999865 59999999
Q ss_pred HHHHHH
Q psy12594 402 ALNILI 407 (542)
Q Consensus 402 aL~nl~ 407 (542)
++..+.
T Consensus 290 A~~~It 295 (410)
T TIGR02270 290 AFSLIT 295 (410)
T ss_pred HHHHhh
Confidence 999886
No 67
>KOG0212|consensus
Probab=98.84 E-value=4.4e-07 Score=88.50 Aligned_cols=388 Identities=12% Similarity=0.092 Sum_probs=230.8
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-Chhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ-DERC 118 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~ 118 (542)
++.+|+.+....+.|..+|..|+..|.+++.....+.... ....+..+.++..+.+..++. ++..+-.+-.. ..+.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcccc
Confidence 5678888888889999999999999999992221111111 122333444444444444443 34454444322 1111
Q ss_pred h-hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 119 A-GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV-QCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 119 ~-~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
. .+.-.+.+|.|-+-+...++..|...+.-|..+-. .|. .+.+- -..+++-|..+|.+++.++|..+-.++.++-.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 1 23333556666666667788888887776666654 222 12221 12457778899999999999888777766543
Q ss_pred C---CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChh-HHHHHH
Q psy12594 197 H---SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGL-VQKNAA 271 (542)
Q Consensus 197 ~---~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~-v~~~a~ 271 (542)
. +|... --...++.++.-+.++++.++..|+.-+..+..-.+ ..-...-.+++. ++.++.++++. ++..+.
T Consensus 238 eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 238 EIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 1 23221 113567889999999999999988777777666543 222334467788 88888888653 444333
Q ss_pred ---HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh
Q psy12594 272 ---TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK 348 (542)
Q Consensus 272 ---~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 348 (542)
..+..++.......+ +--...++.+..++.++....+..++.-+..+-...+... ........+.|+.-|.+.+
T Consensus 314 ~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~s- 390 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRS- 390 (675)
T ss_pred HHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCch-
Confidence 234444432221111 1112457788889999998899988876666644433322 2334467888888888855
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH---HhhCCCchhhHHhhcCCCC
Q psy12594 349 EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL---IPKCENPKELEQMLLGNVS 425 (542)
Q Consensus 349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl---~~~~~~i~~L~~lL~~~~~ 425 (542)
+.+...++..+.+++..+... .. -.++..|+++.... ..-++..+...+..+ +....+...+..+|.+..+
T Consensus 391 d~vvl~~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~n 464 (675)
T KOG0212|consen 391 DEVVLLALSLLASICSSSNSP-NL---RKFLLSLLEMFKED--TKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREEN 464 (675)
T ss_pred hHHHHHHHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhcccc
Confidence 488889999999997654331 00 11233344444433 123445555554444 3333345667777763344
Q ss_pred HHHHHHHHHHHHhhCCCChh
Q psy12594 426 EELLASILCAFAKILPCDPV 445 (542)
Q Consensus 426 ~~v~~~~l~~l~~ll~~~~~ 445 (542)
-+.......+|..++-..++
T Consensus 465 l~FAstMV~~Ln~iLlTStE 484 (675)
T KOG0212|consen 465 LKFASTMVQALNTILLTSTE 484 (675)
T ss_pred chHHHHHHHHHHhhhcccHH
Confidence 46777777777777666543
No 68
>KOG3678|consensus
Probab=98.82 E-value=5.5e-07 Score=85.81 Aligned_cols=272 Identities=16% Similarity=0.146 Sum_probs=189.7
Q ss_pred chHHHHhCCchHHHHhhhcCCCh--HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHH
Q psy12594 33 TIHFLKDLNVVDLIVPLLADKVP--SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLT 109 (542)
Q Consensus 33 ~~~~l~~~g~i~~L~~lL~s~~~--~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~ 109 (542)
.+..++..|++..|+.++.+.+. .+|..|...|..+.. .++++.+...| +..++.+.+ .+.++..+..+.+|.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AENRDRVARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 44567788999999999988764 569999999998873 24455555555 445555544 366888999999999
Q ss_pred HHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh-cCChHHHHHHHHcCChHHHHHhccCCCHhHHHHH
Q psy12594 110 CVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILASPQLSLKHAA 187 (542)
Q Consensus 110 ~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a 187 (542)
++..++++... ++..|++..++-..+..+|.+...++.+|+|++ ......++.+++..+-+.|.-+..+.+.-++..|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 99999888777 999999999999999999999999999999988 4456678889999888999988888888899999
Q ss_pred HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhH
Q psy12594 188 AFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLV 266 (542)
Q Consensus 188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v 266 (542)
+.+++.|+. +.+.-..+-.+|.+..+-.++..-|+.- ++++..+..+ -....-++ |+.+|.+..-+.
T Consensus 328 ClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EA 395 (832)
T KOG3678|consen 328 CLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEA 395 (832)
T ss_pred HHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHHHHhhhhhhcchhhh
Confidence 999999998 5666666766777665555555545432 1222111111 11124566 888888664444
Q ss_pred HHHHHHHHHHHhc--CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 267 QKNAATLLRDMCK--HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 267 ~~~a~~~L~~L~~--~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
+.-++.-|..=+. ......+.+.+-|.|+.|-++..+++.....-|-.+|..+.
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 4433332221111 11222344556788999999888877654444555554443
No 69
>KOG3678|consensus
Probab=98.82 E-value=8.9e-07 Score=84.45 Aligned_cols=158 Identities=14% Similarity=0.167 Sum_probs=133.2
Q ss_pred HhhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcC
Q psy12594 121 LIEDKDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~ 197 (542)
+...|++..|++++..++ ..+|.++.+.|..+.. .++++.+...| ...++.+.+.. .+++++..+.+|.++-.|
T Consensus 176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH 252 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKH 252 (832)
T ss_pred hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence 445689999999999987 5669999999998874 45677787777 55555555543 488999999999999999
Q ss_pred CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594 198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR 275 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~ 275 (542)
+.+.+..+++.|+++.++-.++..++.+.++|+-+|+|++-+. ...+..+++..+.+ |+.+..+.|+-.+.+||-+..
T Consensus 253 Seet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~ 332 (832)
T KOG3678|consen 253 SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVA 332 (832)
T ss_pred hHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998754 34567888888889 999888889999999999998
Q ss_pred HHhcCC
Q psy12594 276 DMCKHN 281 (542)
Q Consensus 276 ~L~~~~ 281 (542)
-++...
T Consensus 333 vlat~K 338 (832)
T KOG3678|consen 333 VLATNK 338 (832)
T ss_pred hhhhhh
Confidence 887654
No 70
>KOG0212|consensus
Probab=98.80 E-value=1.3e-06 Score=85.20 Aligned_cols=362 Identities=17% Similarity=0.100 Sum_probs=219.0
Q ss_pred HhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCC
Q psy12594 47 VPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD 126 (542)
Q Consensus 47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 126 (542)
-.+..+.+..-+..++..+...+-.-..+... .-.+.+++++.++.+++..+|..|+..+.|++..........-..+
T Consensus 49 ~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~--Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~i 126 (675)
T KOG0212|consen 49 GDYAYSPHANMRKGGLIGLAAVAIALGIKDAG--YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEI 126 (675)
T ss_pred HHhccCcccccccchHHHHHHHHHHhccccHH--HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHH
Confidence 34555655555555554444443112222212 3456889999999999999999999999998754322111223345
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE-RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
...+.++..+.+..++..| ..+-.+..+-..-+. .+.-.+++|.|-.-+-..++..|...+.-|..|-. .|.....-
T Consensus 127 FdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~ 204 (675)
T KOG0212|consen 127 FDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMIS 204 (675)
T ss_pred HHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHh
Confidence 6677777777777766543 223333211000000 12212345555555555678888888777776655 33222221
Q ss_pred hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCC
Q psy12594 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD---SPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHN 281 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~ 281 (542)
.-...++.|..+|.++++++|..+-.+++++-.. +|.. +.-...++ ++..++++++.++..|+.-+..+..-.
T Consensus 205 yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 205 YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 2245678899999999999998887777766432 2211 12245678 999999999999999988777776554
Q ss_pred hHHHHHHHhcCCHHHHHHhhhcCCcc-chHHHHHHHh---HhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHH
Q psy12594 282 LRLANLVVLAGGLDGLLRLIDCNGGY-NSLPAIMALG---YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357 (542)
Q Consensus 282 ~~~~~~~~~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~---~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~ 357 (542)
+...- ..-.|++..++.++.+..+. ++..+...-+ .++.. +...+.+--...+.++...+.++. .+.|.+++.
T Consensus 282 g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~-~~~~~~id~~~ii~vl~~~l~~~~-~~tri~~L~ 358 (675)
T KOG0212|consen 282 GRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS-ERLKEEIDYGSIIEVLTKYLSDDR-EETRIAVLN 358 (675)
T ss_pred Ccchh-hhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh-hhhccccchHHHHHHHHHHhhcch-HHHHHHHHH
Confidence 33221 23357777888888877664 5544443322 22222 111111111246778888888854 578888877
Q ss_pred HHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC---CCchhhHHhhc
Q psy12594 358 TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC---ENPKELEQMLL 421 (542)
Q Consensus 358 ~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~---~~i~~L~~lL~ 421 (542)
-+..+-...|. ....-....++.|+.-|.++ +++|-..+...+.++.... +..+.+..||+
T Consensus 359 Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~--sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~ 422 (675)
T KOG0212|consen 359 WIILLYHKAPG-QLLVHNDSIFLTLLKTLSDR--SDEVVLLALSLLASICSSSNSPNLRKFLLSLLE 422 (675)
T ss_pred HHHHHHhhCcc-hhhhhccHHHHHHHHhhcCc--hhHHHHHHHHHHHHHhcCcccccHHHHHHHHHH
Confidence 77777444443 23333457899999999987 5689999999999997653 23445555554
No 71
>KOG0213|consensus
Probab=98.76 E-value=1.7e-06 Score=87.04 Aligned_cols=360 Identities=13% Similarity=0.131 Sum_probs=194.0
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
++.+|++-+++.....-..-+.+++-|....+++....+ ...++-.+++-..+++.+.++-.+.++...|....--...
T Consensus 595 VlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yy-Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y 673 (1172)
T KOG0213|consen 595 VLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYY-TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAY 673 (1172)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHh-HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHH
Confidence 455566666555555555555666666622223332222 2234445566667788999999999999888654322334
Q ss_pred hhcCChHHHHhhhcCC-------C-HHHHHHHHH-------------HHHHhhcCChHHHHHHHHcCChHHHHHhccCCC
Q psy12594 122 IEDKDLDSIISSLHDF-------D-PDTRANAAL-------------ALGGLAKDNKHFAERIVQCGALPPLVQILASPQ 180 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~-------~-~~~~~~a~~-------------~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~ 180 (542)
+....+|.+....... + ..+...+.. .+..+-.+++.+++... +.+..++..+...+
T Consensus 674 ~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~--etv~ri~~~lg~~d 751 (1172)
T KOG0213|consen 674 IRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVA--ETVSRIVGRLGAAD 751 (1172)
T ss_pred HhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHH--HHHHHHHhcccccc
Confidence 4445666665544221 1 111111111 11112222233332222 12333333333221
Q ss_pred --HhHHHHHHHHHHH-HhcCCHHHH----------HHhh------hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594 181 --LSLKHAAAFALDG-IVKHSPELA----------ESAS------DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 181 --~~~~~~a~~~L~n-l~~~~~~~~----------~~~~------~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
..+.+.-...+.+ +...+.+.. ..+. -..++..++..|.++++.+|.+++..++.++..-.
T Consensus 752 iderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlk 831 (1172)
T KOG0213|consen 752 IDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLK 831 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 1111111111111 111110000 0000 01234456677888999999999999999875432
Q ss_pred hhHH-HHHhhchHHHHHhhcCCChhHHHHHHHHHHHHhcCC--hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594 242 SLAS-TIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHN--LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318 (542)
Q Consensus 242 ~~~~-~~~~~~~i~L~~lL~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 318 (542)
.+.+ .+..+-++-|...|....+++.-..+.++..++..- .....- -.+.+|+|...|++...+++.+++..+|.
T Consensus 832 tc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP--i~dllPrltPILknrheKVqen~IdLvg~ 909 (1172)
T KOG0213|consen 832 TCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP--IKDLLPRLTPILKNRHEKVQENCIDLVGT 909 (1172)
T ss_pred hccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC--hhhhcccchHhhhhhHHHHHHHHHHHHHH
Confidence 2221 122222222777888888999888888877775321 000000 14789999999999999999999999999
Q ss_pred hhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC--ChHHHHH----------------------HH
Q psy12594 319 MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH--SVDNVTA----------------------LC 374 (542)
Q Consensus 319 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~----------------------l~ 374 (542)
++...++....---..+.--|+++|+..+ ..+|.+|..++|.|+.. ..+.... +.
T Consensus 910 IadrgpE~v~aREWMRIcfeLlelLkahk-K~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVa 988 (1172)
T KOG0213|consen 910 IADRGPEYVSAREWMRICFELLELLKAHK-KEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA 988 (1172)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhh
Confidence 99876654321111123334677887754 58999999999988632 1111111 11
Q ss_pred H-cC---ChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 375 E-EN---VLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 375 ~-~~---~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
+ ++ ++|.|++-...+ +..||.....+++-+.+.
T Consensus 989 E~c~pFtVLPalmneYrtP--e~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen 989 ETCGPFTVLPALMNEYRTP--EANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred hhcCchhhhHHHHhhccCc--hhHHHHhHHHHHHHHHHH
Confidence 2 22 455555555554 457888888888888654
No 72
>KOG4413|consensus
Probab=98.75 E-value=3.9e-05 Score=70.34 Aligned_cols=380 Identities=16% Similarity=0.156 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh--hhhh---HhhcCChHHH
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE--RCAG---LIEDKDLDSI 130 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~--~~~~---~~~~g~v~~L 130 (542)
+....++.+|.+|. ...+... ...+..+.|-.-|..++..++..++..++.+..+.+ .... ++..+.++.+
T Consensus 58 ekttlcVscLERLf--kakegah--lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkli 133 (524)
T KOG4413|consen 58 EKTTLCVSCLERLF--KAKEGAH--LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLI 133 (524)
T ss_pred chhhhHHHHHHHHH--hhccchh--hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHH
Confidence 34445778888887 3311111 122355666666778899999999999988876544 2222 5688999999
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH--HHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL--VQILASPQLSLKHAAAFALDGIVKHSPELAESASDC 208 (542)
Q Consensus 131 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L--~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 208 (542)
+..+..+|.++-..|...+..++. .+.--..+.++...+.+ ..+.-..+.-.|......+..+.+-+++.......+
T Consensus 134 ldcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkS 212 (524)
T KOG4413|consen 134 LDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKS 212 (524)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhh
Confidence 999999999999999999999997 44445666666655433 333333455677788888999999899999999999
Q ss_pred CChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHhcCChHH
Q psy12594 209 DVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 209 ~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
|.+..|..-++. .|.-++..++.....|+... ..++.+.+.+++. +.+++... ++--+..+.-.+..+-....-.
T Consensus 213 GLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaim 291 (524)
T KOG4413|consen 213 GLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIM 291 (524)
T ss_pred hHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHh
Confidence 999999888875 56778889999999998765 4667777888899 88888765 4444443444444333221100
Q ss_pred ---HHHHHh--cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCc--hHHH-HHhhcCCChhhHHHHHH
Q psy12594 285 ---ANLVVL--AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG--VGSL-QTILQCPHKEQLQVAAA 356 (542)
Q Consensus 285 ---~~~~~~--~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~--l~~L-~~ll~~~~~~~v~~~a~ 356 (542)
.+.+.+ .-.++...+++...++..+..|+-++|.+... .+..+.+.+.|- ...+ ...... +...-+..+.
T Consensus 292 dvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn-teGadlllkTgppaaehllarafdq-nahakqeaai 369 (524)
T KOG4413|consen 292 DVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQ-NAHAKQEAAI 369 (524)
T ss_pred hcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcc-cccchHHHHH
Confidence 011111 12455667778889999999999999987544 445555555442 2233 333333 2224566788
Q ss_pred HHHHHhhcC---ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC--CCchhhHHhhcCCCCHHHHHH
Q psy12594 357 WTLGQIGKH---SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC--ENPKELEQMLLGNVSEELLAS 431 (542)
Q Consensus 357 ~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~--~~i~~L~~lL~~~~~~~v~~~ 431 (542)
++|.+++.. .+++ ..++. .+.+..+.| .....+.. +-+..+..+++ ...+++...
T Consensus 370 haLaaIagelrlkpeq----------------itDgk--aeerlrcli-fdaaaqstkldPleLFlgilq-QpfpEihcA 429 (524)
T KOG4413|consen 370 HALAAIAGELRLKPEQ----------------ITDGK--AEERLRCLI-FDAAAQSTKLDPLELFLGILQ-QPFPEIHCA 429 (524)
T ss_pred HHHHHhhccccCChhh----------------ccccH--HHHHHHHHH-HHHHhhccCCChHHHHHHHHc-CCChhhHHH
Confidence 888888532 1221 11111 123333332 11122221 11333444555 556677777
Q ss_pred HHHHHHhhCCCChhhhhHHHHhcchHHhhhcC
Q psy12594 432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEIE 463 (542)
Q Consensus 432 ~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~ 463 (542)
++..+..+....=..+..|...|.++.+.+-.
T Consensus 430 alktfTAiaaqPWalkeifakeefieiVtDas 461 (524)
T KOG4413|consen 430 ALKTFTAIAAQPWALKEIFAKEEFIEIVTDAS 461 (524)
T ss_pred HHHHHHHHHcCcHHHHHHhcCccceeeecccc
Confidence 77777766543323334555666666555543
No 73
>KOG1824|consensus
Probab=98.75 E-value=3.1e-06 Score=87.43 Aligned_cols=400 Identities=14% Similarity=0.076 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCCh---HHHHHHHhcC
Q psy12594 8 NSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHV---DIRQEVLERN 84 (542)
Q Consensus 8 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~---~~~~~i~~~~ 84 (542)
.+-++-|++|.+++.++..+-.+-...-...-...++.++.-|+ +...|..|++++..++ ..+ +.... -..
T Consensus 578 ~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia--~S~l~i~l~~~--l~~ 651 (1233)
T KOG1824|consen 578 KATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIA--MSPLDIDLSPV--LTE 651 (1233)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHH--hccceeehhhh--HHH
Confidence 34456677777777666554442221111112345555555554 4677889999999999 442 11222 234
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-hhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDE-RCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 163 (542)
+++.+...++......+...+.++-.+..... ....-.-.-++..+..++...|-.+-..|..+|..+....+.. ..-
T Consensus 652 il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~-l~~ 730 (1233)
T KOG1824|consen 652 ILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS-LLK 730 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH-HHH
Confidence 77888888888778888887777766653321 1111111123445556666777778888888888888755543 344
Q ss_pred HHcCChHHHHHhccCCCHhHHHHHHHHHHHH----hcCCHHHHHHhhhCCChHHHHHhhcCCCHH-----HHHH------
Q psy12594 164 VQCGALPPLVQILASPQLSLKHAAAFALDGI----VKHSPELAESASDCDVIPLLIKALNNDEVN-----VKAD------ 228 (542)
Q Consensus 164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl----~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-----~~~~------ 228 (542)
+..-+++.++.+++++- ++-.+..++-++ ....... -+ ...+..++..+-.+ +-.+
T Consensus 731 ~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~------l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 731 ISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPD------LD-YISLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred HhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCC------cc-HHHHHHHHcCCcccccccchhHHHHHHHH
Confidence 55567899999999764 333333333222 2211110 11 34455566544211 2222
Q ss_pred -HHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC
Q psy12594 229 -AFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN 304 (542)
Q Consensus 229 -a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 304 (542)
++.+|...|... .. .... ++.-+. .. +..++.-|.-.|+.+-++.+.... .+....+++.+.++
T Consensus 802 ~cvA~Lt~~~~~~--s~------s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~----~e~~~~iieaf~sp 869 (1233)
T KOG1824|consen 802 KCVAALTCACPQK--SK------SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ----NELKDTIIEAFNSP 869 (1233)
T ss_pred HHHHHHHHhcccc--ch------hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc----hhhHHHHHHHcCCC
Confidence 333333333211 11 1222 333333 22 567777777778877766543222 23445677888888
Q ss_pred CccchHHHHHHHhHhhcCChHHH-HHHH----------------------h----------hCchHHHHHhhcCCChhhH
Q psy12594 305 GGYNSLPAIMALGYMSAQSEQIA-EQII----------------------E----------LQGVGSLQTILQCPHKEQL 351 (542)
Q Consensus 305 ~~~~~~~a~~~L~~l~~~~~~~~-~~~~----------------------~----------~~~l~~L~~ll~~~~~~~v 351 (542)
+.+++.+|..+||+++.++-+.. ..+. . .++|..|....... ++..
T Consensus 870 ~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~-eegt 948 (1233)
T KOG1824|consen 870 SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECA-EEGT 948 (1233)
T ss_pred hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccc-hhhh
Confidence 88888888888888876432211 0000 0 01233333333332 2456
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh-hCCC--------chhhHHhhcC
Q psy12594 352 QVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP-KCEN--------PKELEQMLLG 422 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~-~~~~--------i~~L~~lL~~ 422 (542)
|.-.+.+||.++..+|+ ..+|.|-..+.++. ...|..++.++.-.+. ++.- +..+..+++
T Consensus 949 R~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a--~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~- 1017 (1233)
T KOG1824|consen 949 RNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEA--SNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLR- 1017 (1233)
T ss_pred HHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCC--cchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHh-
Confidence 77777888888777776 36688888888774 4778777777665542 2222 445556778
Q ss_pred CCCHHHHHHHHHHHHhhCCCChhhh
Q psy12594 423 NVSEELLASILCAFAKILPCDPVAR 447 (542)
Q Consensus 423 ~~~~~v~~~~l~~l~~ll~~~~~~~ 447 (542)
+.|.+|++.++.++.....+.|...
T Consensus 1018 dpDl~VrrvaLvv~nSaahNKpslI 1042 (1233)
T KOG1824|consen 1018 DPDLEVRRVALVVLNSAAHNKPSLI 1042 (1233)
T ss_pred CCchhHHHHHHHHHHHHHccCHhHH
Confidence 8999999999999998887776543
No 74
>PF05536 Neurochondrin: Neurochondrin
Probab=98.73 E-value=4.2e-05 Score=78.84 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=132.9
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhcc-------CCHHHHHHHHHHHHHHhc
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLTK-------QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~~-------~~~~~~~~a~~~L~~l~~ 113 (542)
+...+.+|++.+..-|..++..+.++....+ ...++.+.+.=+.+-+-++|++ +....+..++.+|..+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 4456788998888888889999999994333 2334456677667777777775 335677888999999987
Q ss_pred CChhhhh-HhhcCChHHHHhhhcCCCH-HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH
Q psy12594 114 QDERCAG-LIEDKDLDSIISSLHDFDP-DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL 191 (542)
Q Consensus 114 ~~~~~~~-~~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L 191 (542)
. ++... ---.+-+|.|++.+...+. .+...+..+|..++. .++-++.+++.|.++.|++.+.+ .+...+.++.++
T Consensus 87 ~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 D-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred C-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 3 34433 2223579999999987776 899999999999995 66668999999999999999987 556788888888
Q ss_pred HHHhcCCHH-H---HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594 192 DGIVKHSPE-L---AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 192 ~nl~~~~~~-~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
.+++..... . ....+ ...++.+...+.......+-..+..|..+-...
T Consensus 164 ~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 887763321 0 00000 123344444444444445555555555554443
No 75
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.71 E-value=3.3e-06 Score=82.39 Aligned_cols=327 Identities=14% Similarity=0.131 Sum_probs=213.5
Q ss_pred CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHH
Q psy12594 30 KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHM 107 (542)
Q Consensus 30 ~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~ 107 (542)
+|..+..+.-....+.+..++-+++.++|..+.++++.+. .+++....+.+.+.---++..|.. .+..-|.+|+..
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i--~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkl 91 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLI--SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKL 91 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH--cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence 5656665555555555655555555999999999999999 888888888887766667777875 446778899999
Q ss_pred HHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHH
Q psy12594 108 LTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAA 187 (542)
Q Consensus 108 L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a 187 (542)
++.+........ .+..|++..++.+..+.++..+..|+.+|..++-.+|+ .+...|++..|++.+-++..++.+..
T Consensus 92 iR~~l~~~~~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l 167 (371)
T PF14664_consen 92 IRAFLEIKKGPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESL 167 (371)
T ss_pred HHHHHHhcCCcc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHH
Confidence 999875532211 23457889999999999999999999999999986664 57788999999999998766688888
Q ss_pred HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-------CH--HHHHHHHHHHHHHhcCChhhHHHHHh-hchHH-HH
Q psy12594 188 AFALDGIVKHSPELAESASDCDVIPLLIKALNND-------EV--NVKADAFLCLADIAKDSPSLASTIAD-GATTL-AV 256 (542)
Q Consensus 188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~--~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~-L~ 256 (542)
+.++-.+.. .|..|..+...--++.+..-+.+. +. +....+..++..+-+.=+........ ...+. |+
T Consensus 168 ~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv 246 (371)
T PF14664_consen 168 LDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLV 246 (371)
T ss_pred HHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHH
Confidence 889988887 677777665433445554444322 22 34555666666665543323222222 25788 99
Q ss_pred HhhcCCChhHHHHHHHHHHHHhcCC-hHHHHHHH------hcCCHHHHHHhhh--cCCccchHHHHHHHhHhhcCC-hHH
Q psy12594 257 EHLTYPHGLVQKNAATLLRDMCKHN-LRLANLVV------LAGGLDGLLRLID--CNGGYNSLPAIMALGYMSAQS-EQI 326 (542)
Q Consensus 257 ~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~------~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~-~~~ 326 (542)
..|..++++++......|..+-+-. |.+..... ..+-+..--.+.. .+.......-..-=.++..+. .-.
T Consensus 247 ~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLl 326 (371)
T PF14664_consen 247 DSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALL 326 (371)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHH
Confidence 9999999999999999999886543 22222111 1111100001110 000000000000000111110 112
Q ss_pred HHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594 327 AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG 363 (542)
Q Consensus 327 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 363 (542)
...++++|.++.|+++....+++.+...|...|+.+.
T Consensus 327 l~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 327 LAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 3457889999999999999767788888888888774
No 76
>KOG1242|consensus
Probab=98.70 E-value=2e-05 Score=78.73 Aligned_cols=338 Identities=15% Similarity=0.121 Sum_probs=206.9
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHH-HHHHHHHHhcCChhhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKT-ALHMLTCVAQQDERCAG 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~-a~~~L~~l~~~~~~~~~ 120 (542)
..+.+.+++++....-|..|...+..+. .+. ....+.+.+.+..+-+.+.+.+...++. +..+....+.+-. .
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v--~g~-~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~ 208 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLV--NGL-GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---P 208 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHH--cCc-HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---C
Confidence 4456666777666777777777777777 431 2233445677777877777655544443 3333332222111 1
Q ss_pred HhhcC---ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594 121 LIEDK---DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 121 ~~~~g---~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~ 197 (542)
..+.. .+|.++....+..+.+|..|..+...+.+.-+.+.-.. ++|.++.-+.+....-+..++..|+.++..
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 12223 44455555556678999988888777764333221111 255555555545677888999999999987
Q ss_pred CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
.+....... ..++|.+.+.|.++++++++.+..++..++..-. +.+ -...+| |++.+.++...+....- .
T Consensus 285 ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N~d---I~~~ip~Lld~l~dp~~~~~e~~~----~ 355 (569)
T KOG1242|consen 285 APKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-NPD---IQKIIPTLLDALADPSCYTPECLD----S 355 (569)
T ss_pred chHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-cHH---HHHHHHHHHHHhcCcccchHHHHH----h
Confidence 665555444 8899999999999999999999999999987532 222 125678 88988888644333221 1
Q ss_pred HhcCChHHHHHHHhcC----CHHHHHHhhhcCCccchHHHHHHHhHhhcCC--hHHHHHHHhhCchHHHHHhhcCCChhh
Q psy12594 277 MCKHNLRLANLVVLAG----GLDGLLRLIDCNGGYNSLPAIMALGYMSAQS--EQIAEQIIELQGVGSLQTILQCPHKEQ 350 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~----~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~~~~~~~ 350 (542)
|.... ... .++.. .+|.|.+-+...+...+..++.+++|++.-- +.....++. .++|.|-..+... .++
T Consensus 356 L~~tt--FV~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~-~PE 430 (569)
T KOG1242|consen 356 LGATT--FVA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDA-VPE 430 (569)
T ss_pred hccee--eee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCC-Chh
Confidence 11110 000 01112 2344445555566678889999999998743 333333332 5677777777775 679
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 351 LQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 351 v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
+|..+.++|+.+...-.+. ...+.+|.+...+..+.. ..-+..++..|+..+.
T Consensus 431 vR~vaarAL~~l~e~~g~~----~f~d~~p~l~e~~~~~k~-~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 431 VRAVAARALGALLERLGEV----SFDDLIPELSETLTSEKS-LVDRSGAAQDLSEVLA 483 (569)
T ss_pred HHHHHHHHHHHHHHHHHhh----cccccccHHHHhhccchh-hhhhHHHhhhHHHHHh
Confidence 9999999998885432221 115678888888877642 3344455555555543
No 77
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.70 E-value=1.3e-06 Score=85.95 Aligned_cols=260 Identities=16% Similarity=0.151 Sum_probs=169.1
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNK--HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAE 203 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~ 203 (542)
++..++..|++..|.+|..|+...+.++.--. .-.+.+...|. .|.+.+....+++.-..+.++..|.+. ...+.
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv-~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSV-HRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhh-hcccc
Confidence 56778899999999999999998887763111 11234444443 467778888888888777777776652 11111
Q ss_pred -HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 204 -SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL---ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 204 -~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
+---.|++|.|..+|++.+..+..+.+..++.+|..+++. ++.+ .+.- |+++|++.+.++|++|...+..++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 1112688999999999999999999999999999988753 2333 3455 999999999999999999999998
Q ss_pred cCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHH
Q psy12594 279 KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358 (542)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 358 (542)
+.-- -..++..|+.-|+..+-..+....-+|+-.+..+.. ..++|.|+.=-.. ++..+|.-.+++
T Consensus 759 ~aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~T-Pe~nVQnGvLka 823 (975)
T COG5181 759 RAIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYET-PEANVQNGVLKA 823 (975)
T ss_pred hhcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccC-chhHHHHhHHHH
Confidence 5321 112334555555555444444433444433322111 1456666655555 345677777777
Q ss_pred HHHhhcCChH-HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594 359 LGQIGKHSVD-NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC 410 (542)
Q Consensus 359 L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~ 410 (542)
++.+...-.+ ....+ ....|.|-+.|.+.+ +--|..|...+..+.-+|
T Consensus 824 m~fmFeyig~~s~dYv--y~itPlleDAltDrD--~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 824 MCFMFEYIGQASLDYV--YSITPLLEDALTDRD--PVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHHHHHH--HHhhHHHHhhhcccc--hHHHHHHHHHHHHHhcCC
Confidence 6665322111 11111 235678888888874 467778888888887555
No 78
>KOG2973|consensus
Probab=98.67 E-value=1.8e-05 Score=72.07 Aligned_cols=273 Identities=15% Similarity=0.138 Sum_probs=176.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH--hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL--IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 163 (542)
+..+++++.+.+|.++..|+..+..+... ..+.+ -+...++.+.+++.+.++ ...|+.+|.|++. ++..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHH
Confidence 45688999999999999999888887655 22221 233578889999988777 5678899999987 66778888
Q ss_pred HHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh--h----CCChHHHHHhhcCC-C-HHHHHHHHHHHHH
Q psy12594 164 VQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS--D----CDVIPLLIKALNND-E-VNVKADAFLCLAD 235 (542)
Q Consensus 164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~--~----~~~i~~L~~ll~~~-~-~~~~~~a~~~L~~ 235 (542)
++. ++..++..+-++...+-...+..|.|+++.......... . .+.+..+......+ + ..-....+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 777 778888888888777888899999999996554443322 1 33344444444422 1 1223456678889
Q ss_pred HhcCChhhHHHHHhhchHH--HHHhhcCCChhHHH-HHHHHHHHHhcCChHHHHHHHhc--CCHHHHH------------
Q psy12594 236 IAKDSPSLASTIADGATTL--AVEHLTYPHGLVQK-NAATLLRDMCKHNLRLANLVVLA--GGLDGLL------------ 298 (542)
Q Consensus 236 l~~~~~~~~~~~~~~~~i~--L~~lL~~~~~~v~~-~a~~~L~~L~~~~~~~~~~~~~~--~~i~~Lv------------ 298 (542)
|++.. ..+..+.+...++ .+.-+.+.+..+|+ ..+++|.|.|-..+.... +.+. ..+|.|+
T Consensus 159 ls~~~-~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 159 LSQFE-AGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred Hhhhh-hhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCHH
Confidence 98875 4677777755554 33333335555555 578889998865543332 2221 1222221
Q ss_pred ---------Hhhh-----cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594 299 ---------RLID-----CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK 364 (542)
Q Consensus 299 ---------~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 364 (542)
+++. .+++.++..-+.+|.-|+.. ...++.+.+.|+-+.+-.+=+...++++++.+-.....+..
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 3332 24556888888888877765 44566677767777666666666667787755555555544
Q ss_pred CCh
Q psy12594 365 HSV 367 (542)
Q Consensus 365 ~~~ 367 (542)
..+
T Consensus 316 ~e~ 318 (353)
T KOG2973|consen 316 LEP 318 (353)
T ss_pred ccc
Confidence 443
No 79
>KOG1824|consensus
Probab=98.66 E-value=2.8e-05 Score=80.63 Aligned_cols=291 Identities=15% Similarity=0.178 Sum_probs=173.3
Q ss_pred CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHH
Q psy12594 52 DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSI 130 (542)
Q Consensus 52 s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~L 130 (542)
+.|.+|+..|..+++.+.....+...... ...++.+++-| +++..|..|+.++..++...-.+.. -+-..+++.+
T Consensus 581 d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l 656 (1233)
T KOG1824|consen 581 DSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPEL 656 (1233)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHH
Confidence 56789999999999988832222222221 12344444444 5677788899999988866544443 3334577888
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCC
Q psy12594 131 ISSLHDFDPDTRANAALALGGLAKDNK-HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCD 209 (542)
Q Consensus 131 v~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 209 (542)
...+.......+...+.++-.+..... .......+ -++..+-.++...+..+...|..+|..+....|..- .-+...
T Consensus 657 ~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~ 734 (1233)
T KOG1824|consen 657 ASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNP 734 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhh
Confidence 888877777777776666665552111 11111111 124445556677778888899999999988655433 334467
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHH----HhcCChhhHHHHHhhchHH-HHHhhcCCC---------hhHHHHHHHHHH
Q psy12594 210 VIPLLIKALNNDEVNVKADAFLCLAD----IAKDSPSLASTIADGATTL-AVEHLTYPH---------GLVQKNAATLLR 275 (542)
Q Consensus 210 ~i~~L~~ll~~~~~~~~~~a~~~L~~----l~~~~~~~~~~~~~~~~i~-L~~lL~~~~---------~~v~~~a~~~L~ 275 (542)
+++.++.+++++- ++-.+..++-+ +.....+. .+ .. ++.++..+- .......+.|..
T Consensus 735 iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~------l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA 805 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPD------LD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA 805 (1233)
T ss_pred hHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCC------cc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence 8899999998663 33333333222 22222111 12 34 777777661 122334455555
Q ss_pred HHhcCChHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH
Q psy12594 276 DMCKHNLRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV 353 (542)
Q Consensus 276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 353 (542)
.|+...++....+ ...+..-+.+ .+..++.-|+..+|.+..+.+.... .+.-..+++-+.+++ ++++.
T Consensus 806 ~Lt~~~~~~s~s~-----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~----~e~~~~iieaf~sp~-edvks 875 (1233)
T KOG1824|consen 806 ALTCACPQKSKSL-----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQ----NELKDTIIEAFNSPS-EDVKS 875 (1233)
T ss_pred HHHHhccccchhH-----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcc----hhhHHHHHHHcCCCh-HHHHH
Confidence 5655444332222 2234444443 3455888888899998765443222 234446778888854 69999
Q ss_pred HHHHHHHHhhcCCh
Q psy12594 354 AAAWTLGQIGKHSV 367 (542)
Q Consensus 354 ~a~~~L~~l~~~~~ 367 (542)
+|.++||+++.|+-
T Consensus 876 AAs~ALGsl~vgnl 889 (1233)
T KOG1824|consen 876 AASYALGSLAVGNL 889 (1233)
T ss_pred HHHHHhhhhhcCch
Confidence 99999999998764
No 80
>KOG1517|consensus
Probab=98.63 E-value=3.8e-06 Score=87.63 Aligned_cols=227 Identities=15% Similarity=0.157 Sum_probs=180.3
Q ss_pred HHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhc
Q psy12594 58 QHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLH 135 (542)
Q Consensus 58 ~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~ 135 (542)
|..|+..|++.. .- +=....-..-|++|.++++|++...++|.--+++..++..-++..+. +++.++-..+++.|.
T Consensus 487 RlRAL~LL~RFL--DlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFL--DLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHh--ccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 455777777766 33 33334444679999999999999999999999999998777777777 888888889999987
Q ss_pred C-C--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCCh
Q psy12594 136 D-F--DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVI 211 (542)
Q Consensus 136 ~-~--~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i 211 (542)
+ + +++-|..|+.+|+.+....+--++...+.+.+...+..|.++ .+-++..++-+|+.|-.+.++.+-.-.+.++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 7 3 368999999999999988888888889999999999999985 68899999999999999888888888889999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCC----hhhHH------------HHHhh----chHHHHHhhcCCChhHHHHHH
Q psy12594 212 PLLIKALNNDEVNVKADAFLCLADIAKDS----PSLAS------------TIADG----ATTLAVEHLTYPHGLVQKNAA 271 (542)
Q Consensus 212 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~------------~~~~~----~~i~L~~lL~~~~~~v~~~a~ 271 (542)
+.|..++.++.+++|..|+.+|+.+.... ++... ...+. +.++++.++++.++-++...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999998752 11111 11121 122366677778888888888
Q ss_pred HHHHHHhcCChHHHH
Q psy12594 272 TLLRDMCKHNLRLAN 286 (542)
Q Consensus 272 ~~L~~L~~~~~~~~~ 286 (542)
-+|..+..+......
T Consensus 725 v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 725 VALSHFVVGYVSHLK 739 (1387)
T ss_pred HHHHHHHHhhHHHhH
Confidence 888887766544433
No 81
>KOG1061|consensus
Probab=98.62 E-value=2.4e-06 Score=86.92 Aligned_cols=374 Identities=19% Similarity=0.126 Sum_probs=203.0
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
++..+++=.++++|.+|..|++.++.+- .. .... -...++...+++.++.+|+.++....++-..+ ...+
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~--v~-~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--~~~~ 156 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLR--VD-KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID--PDLV 156 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEe--eh-HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC--hhhc
Confidence 3444444445667778877777776665 22 1111 24568888899999999999998888876433 2236
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~ 201 (542)
.+.|.++.|-.++.+.+|.+...|+.+|..+...++..-...+....+..++..+...+.=-|...+.++.+-.-.++..
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e 236 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE 236 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh
Confidence 68899999999999999999999999999998655431111111111223333333322222322322333222211111
Q ss_pred HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594 202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~ 280 (542)
.. ..+..+...+++.+..+.-.+..++.++...-......+. ..+-+ ++.++.... ++...++.=+..+..+
T Consensus 237 a~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 237 AE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLILQK 309 (734)
T ss_pred HH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHHHHh
Confidence 11 1234455555555555555555555555443322111111 12333 444444443 3333222222111111
Q ss_pred ChHH-----------------H-----H---HHHh----cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594 281 NLRL-----------------A-----N---LVVL----AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII 331 (542)
Q Consensus 281 ~~~~-----------------~-----~---~~~~----~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 331 (542)
.|.. . + .+.. ..++..+.++-...+......+++++|+++..-++.
T Consensus 310 ~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~----- 384 (734)
T KOG1061|consen 310 RPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS----- 384 (734)
T ss_pred ChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----
Confidence 1110 0 0 0000 013344455555567778888999999997643332
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE 411 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~ 411 (542)
++.++.|++++....+ .+..++...+..+....|.....+ ++.+..-+.+=+ +++.|..-.|.++.-....+
T Consensus 385 -~~cv~~lLell~~~~~-yvvqE~~vvi~dilRkyP~~~~~v-----v~~l~~~~~sl~-epeak~amiWilg~y~~~i~ 456 (734)
T KOG1061|consen 385 -NDCVSILLELLETKVD-YVVQEAIVVIRDILRKYPNKYESV-----VAILCENLDSLQ-EPEAKAALIWILGEYAERIE 456 (734)
T ss_pred -hhhHHHHHHHHhhccc-ceeeehhHHHHhhhhcCCCchhhh-----hhhhcccccccC-ChHHHHHHHHHHhhhhhccC
Confidence 5789999999987544 677778888888877766543322 233333333322 46888888998887765543
Q ss_pred Cchh-hHHhhcC--CCCHHHHHHHHHHHHhhCCCChh
Q psy12594 412 NPKE-LEQMLLG--NVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 412 ~i~~-L~~lL~~--~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
.-+. |..++++ +.+.+|....+.+..+++-+.+.
T Consensus 457 ~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~ 493 (734)
T KOG1061|consen 457 NALELLESFLENFKDETAEVQLELLTAAIKLFLKKPT 493 (734)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc
Confidence 3333 3333332 33446666666666665444443
No 82
>KOG2973|consensus
Probab=98.62 E-value=2.9e-05 Score=70.68 Aligned_cols=271 Identities=13% Similarity=0.143 Sum_probs=171.6
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV-QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
...++.++.+.+|.++..|+..+..++.. ..+-... +...++.+.+++...++ .+.|+.+|.|++. ++..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHH
Confidence 34688899999999999999988888764 1111111 22457889999988776 6778899999999 77788888
Q ss_pred hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------hchHHHHHh-hcCC-C-hhHHHHHHHHHHH
Q psy12594 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD------GATTLAVEH-LTYP-H-GLVQKNAATLLRD 276 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~L~~l-L~~~-~-~~v~~~a~~~L~~ 276 (542)
++. .+..++.++.++....-...+.+|.|+++........... .+.+.++.. ...+ + ..-....+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 765 7788888888887888899999999999987655554433 233444433 3333 2 2344567778888
Q ss_pred HhcCChHHHHHHHhcCCH--HHHHHhhhcCCccchH-HHHHHHhHhhcCChHHHHHHH-hhCchHHHH------------
Q psy12594 277 MCKHNLRLANLVVLAGGL--DGLLRLIDCNGGYNSL-PAIMALGYMSAQSEQIAEQII-ELQGVGSLQ------------ 340 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~~i--~~Lv~lL~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~------------ 340 (542)
+++....+ ..+.+...+ ..++.+-. .+..+|. ..+.+|.|.|.....+...+- +.+.++.|+
T Consensus 159 ls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 159 LSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred Hhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 88654433 334333332 34444444 4445554 445688887654433222211 112333322
Q ss_pred ---------Hhhc----CCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 341 ---------TILQ----CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 341 ---------~ll~----~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
+++. ..+++.++.....+|..+|+.. .-++.+.+.|+.+.+-.+-+.. .++++++.+-....-++
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e-~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWE-EDEDIREACEQVVQMLV 314 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCC-CcHHHHHHHHHHHHHHH
Confidence 3333 2234678888999999997654 3466777777777766665554 46677765554443333
No 83
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.60 E-value=2.4e-05 Score=76.80 Aligned_cols=251 Identities=25% Similarity=0.340 Sum_probs=180.2
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
..++.+..++.+.+..++..|...++.+. ....++.+...+.+.++.+|..++.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~------------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG------------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP------ 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc------------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence 46788899999999999999999988887 456788999999999999999999988776532
Q ss_pred HhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH------------hHHHHH
Q psy12594 121 LIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL------------SLKHAA 187 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~------------~~~~~a 187 (542)
..++.++.++. +++..+|..+.++|+.+-... .+..++..+++... .++..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 37889999998 588999999999999886521 26677777776552 355556
Q ss_pred HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhH
Q psy12594 188 AFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLV 266 (542)
Q Consensus 188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v 266 (542)
...|+.+.. ...++.+...+.+.+..+|..+..+|..+.... ..+.+ +...+.+.+..+
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 666665544 456788889999888899999999999887765 24456 788888889999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594 267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 267 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 346 (542)
+..++.+|..+-. ....+.+...+...+..++..+...++.+ . . ......+...+.+
T Consensus 230 r~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~---~------~~~~~~l~~~~~~- 286 (335)
T COG1413 230 RKAALLALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGAL--D---L------AEAALPLLLLLID- 286 (335)
T ss_pred HHHHHHHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhccc--C---c------hhhHHHHHHHhhc-
Confidence 9998888776653 23345566777777766655555444411 0 0 0122233444444
Q ss_pred ChhhHHHHHHHHHHHhhcCCh
Q psy12594 347 HKEQLQVAAAWTLGQIGKHSV 367 (542)
Q Consensus 347 ~~~~v~~~a~~~L~~l~~~~~ 367 (542)
....++..+...++.+.....
T Consensus 287 ~~~~~~~~~~~~l~~~~~~~~ 307 (335)
T COG1413 287 EANAVRLEAALALGQIGQEKA 307 (335)
T ss_pred chhhHHHHHHHHHHhhcccch
Confidence 234677777777777754443
No 84
>KOG1059|consensus
Probab=98.60 E-value=2.3e-05 Score=78.97 Aligned_cols=216 Identities=14% Similarity=0.111 Sum_probs=142.8
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV 164 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 164 (542)
.-+.++.+|++.-+-+|+.|+.++..+.-.-|+..+ ..+|.|++-|.++||.++..|+.+++.|++.+|.+.-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 344555667777777777777777776644433333 3567788888888888888888888888876665322
Q ss_pred HcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC-HHHHHHHHHHHH--HHhcCC
Q psy12594 165 QCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE-VNVKADAFLCLA--DIAKDS 240 (542)
Q Consensus 165 ~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~--~l~~~~ 240 (542)
..-|.+.++|.+. +.=+....+..+++|+--.|.... ..++++..++.+.. ..+...|+.++. +++...
T Consensus 218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred --cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 2256677777554 233444556667777765565543 34578888887653 334444444432 233332
Q ss_pred hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594 241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM 319 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 319 (542)
++.-..+ .-.+. |-.++.++|+.+++-++-+++.+....|...+... +.++++|.+.|+++|..|+..+..+
T Consensus 291 ~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 291 SDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccCCchhHHHHHHHHHHH
Confidence 2222211 13456 77888899999999999999999988877665432 4678999999999999999988777
Q ss_pred hc
Q psy12594 320 SA 321 (542)
Q Consensus 320 ~~ 321 (542)
+.
T Consensus 364 Vs 365 (877)
T KOG1059|consen 364 VS 365 (877)
T ss_pred hh
Confidence 64
No 85
>KOG2259|consensus
Probab=98.60 E-value=5.7e-07 Score=89.29 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=196.3
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-----hhhhh
Q psy12594 46 IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD-----ERCAG 120 (542)
Q Consensus 46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-----~~~~~ 120 (542)
|..+..+.|+.+|..|+..|..|. +.-.... -.....++.|++++..+|..|+..+.-++... .+...
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~--eg~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALS--EGFKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhc--ccccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 667777788888888888888887 4322211 14567788999999999999976655554322 11111
Q ss_pred -HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH--h--
Q psy12594 121 -LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI--V-- 195 (542)
Q Consensus 121 -~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl--~-- 195 (542)
-....++..+.+.+.+....+|..|+.+|+.+-..+.+....-++..++..+-+--.... .......+- +
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahk-----rpk~l~s~GewSsG 350 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHK-----RPKALYSSGEWSSG 350 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhccc-----chHHHHhcCCcccC
Confidence 122357778888999888999999999999887655554444433322221111000000 000111111 1
Q ss_pred ---------cCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChh
Q psy12594 196 ---------KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGL 265 (542)
Q Consensus 196 ---------~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~ 265 (542)
.+..+....++..|+-..++.-+.+.--++|+.|+..++.|+...|.+.. ..+. |++++.+..+.
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV 425 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence 01122344567788888899888888889999999999999999887766 5678 99999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcC
Q psy12594 266 VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQC 345 (542)
Q Consensus 266 v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 345 (542)
||..|+.+|..++.+- .++...++.+...|.+.++++|.+.-..|++.--.+.+.... .+..|+.-|..
T Consensus 426 VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k 494 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK 494 (823)
T ss_pred HHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh
Confidence 9999999999999762 223455778889999999999988887877654444333332 23333433433
Q ss_pred CChhhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 346 PHKEQLQVAAAWTLGQIGKHSVDNVTAL 373 (542)
Q Consensus 346 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l 373 (542)
-+ .-+.....+++.++.+++.....+
T Consensus 495 yP--qDrd~i~~cm~~iGqnH~~lv~s~ 520 (823)
T KOG2259|consen 495 YP--QDRDEILRCMGRIGQNHRRLVLSN 520 (823)
T ss_pred CC--CCcHHHHHHHHHHhccChhhHHHH
Confidence 22 235567788999988877655544
No 86
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.55 E-value=4.2e-05 Score=75.12 Aligned_cols=249 Identities=24% Similarity=0.282 Sum_probs=173.8
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 163 (542)
..++.+++.+.+.+..++..+...++.+... -+++.+..++.+.++.+|..++.+|+.+-. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~----- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE----------EAVPLLRELLSDEDPRVRDAAADALGELGD--PE----- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hh-----
Confidence 3677888899988999999999887766533 378999999999999999999998888753 22
Q ss_pred HHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCH------------HHHHHHH
Q psy12594 164 VQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEV------------NVKADAF 230 (542)
Q Consensus 164 ~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------~~~~~a~ 230 (542)
.++.++.++. +++..+|..+.++|+.+-. ...+..++..+.+... .++..+.
T Consensus 106 ----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 106 ----AVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 3888999998 5889999999999999876 2336677777776542 3555555
Q ss_pred HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594 231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS 309 (542)
Q Consensus 231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 309 (542)
.+++.+-.. ..++ +...+.+.+..++..+..+|..+..+. ....+.+...+.+++..++
T Consensus 171 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 171 EALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHH
Confidence 555554322 3455 788888888899999999988887654 2344567788888888899
Q ss_pred HHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcC
Q psy12594 310 LPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389 (542)
Q Consensus 310 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~ 389 (542)
..++.+++.+... .....+...+.... ..++..+...++.. .... ....+...+.+.
T Consensus 231 ~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~-~~~~~~~~~~~~~~--~~~~---------~~~~l~~~~~~~ 287 (335)
T COG1413 231 KAALLALGEIGDE-----------EAVDALAKALEDED-VILALLAAAALGAL--DLAE---------AALPLLLLLIDE 287 (335)
T ss_pred HHHHHHhcccCcc-----------hhHHHHHHHHhccc-hHHHHHHHHHhccc--Cchh---------hHHHHHHHhhcc
Confidence 9999888876433 34455666666643 34444444444311 1111 234445555554
Q ss_pred CCChHHHHHHHHHHHHHHhh
Q psy12594 390 CVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 390 ~~~~~v~~~a~~aL~nl~~~ 409 (542)
...++..+++++......
T Consensus 288 --~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 288 --ANAVRLEAALALGQIGQE 305 (335)
T ss_pred --hhhHHHHHHHHHHhhccc
Confidence 347888888877766544
No 87
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.53 E-value=7.9e-05 Score=77.62 Aligned_cols=265 Identities=17% Similarity=0.127 Sum_probs=169.8
Q ss_pred hcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594 50 LADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD 128 (542)
Q Consensus 50 L~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~ 128 (542)
+.+.+...+..|+ .++..+. .+++. ...++.+++...+.+.++++..-..|..++...|+...+ +++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~--~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMS--LGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHh--cCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHH
Confidence 6777777777777 6777777 44332 225677888887889999999999999999888744332 478
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594 129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC 208 (542)
Q Consensus 129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 208 (542)
.+.+-++++++.+|..|+++++.+-. ++.... +++.+.+++.++++.+|+.|+.++.++-+-+++ .+.+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV--KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcc
Confidence 88999999999999999999887743 232222 378899999999999999999999999875554 34457
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHH
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLA 285 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~ 285 (542)
|.+..+..++.+.+|.+...|+.+|..+.... ....... ...++ +.-..... .++++..-...|..-....+...
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~--a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~ 243 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDPEL--AHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSA 243 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhchhh--hhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcH
Confidence 78899999999999999999999999886551 1111110 01111 11001111 14444444455544444444322
Q ss_pred HHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594 286 NLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 286 ~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 346 (542)
..+ ..++...+.+.++.+...++..+..+....+.... .....+.++.++..+
T Consensus 244 ~~~-----~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~---~~~~~~~l~~Ll~~~ 296 (757)
T COG5096 244 EDF-----EERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNL---FLISSPPLVTLLAKP 296 (757)
T ss_pred HHH-----HHhccchhhhCcHHHHHHHHHHHHHHhhhhccccH---HHhhccHHHHHHcCC
Confidence 212 22334445556666666666655544432222111 112344555666553
No 88
>KOG1242|consensus
Probab=98.52 E-value=1.9e-05 Score=78.81 Aligned_cols=338 Identities=16% Similarity=0.130 Sum_probs=205.3
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 122 (542)
+..+..-+....+.+|.....+|..+........ .....+.+.++++.....-+..+.+.+..+..+. ....+.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~~ 171 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESLK 171 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhhh
Confidence 3444444555667888887777777761111111 1235567778888777788888888888887654 333456
Q ss_pred hcCChHHHHhhhcCCCHHHHHH-HHHHHHHhhcCChHHHHHHHHcC---ChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 123 EDKDLDSIISSLHDFDPDTRAN-AALALGGLAKDNKHFAERIVQCG---ALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~~~~~~~-a~~~L~~l~~~~~~~~~~i~~~g---~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
+.+.+..+....++.....+.. +..+.......-. ...+.. .+|.++..+.+....+|..|..+...+...-
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~ 247 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL 247 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc
Confidence 6778888888888776443332 3332222221000 111122 2455556666667889999888887776633
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
+...- .-.+|.++.-+.......+..++..++.++...+ .+-...-..++| +.+.|-+..++++..+..++..+
T Consensus 248 ~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 248 SAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred Ccchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 22111 1223444444444467788899999999988876 444455578999 99999999999999999999999
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC---ChhhHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP---HKEQLQVA 354 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~v~~~ 354 (542)
+.-..... + ...+|.|++.+.++.-.+. .++..|+.-.. -..++.-.+..++.++..+ .+..+++.
T Consensus 323 ~svidN~d--I--~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttF------V~~V~~psLalmvpiL~R~l~eRst~~kr~ 391 (569)
T KOG1242|consen 323 GSVIDNPD--I--QKIIPTLLDALADPSCYTP-ECLDSLGATTF------VAEVDAPSLALMVPILKRGLAERSTSIKRK 391 (569)
T ss_pred HHhhccHH--H--HHHHHHHHHHhcCcccchH-HHHHhhcceee------eeeecchhHHHHHHHHHHHHhhccchhhhh
Confidence 85321111 1 2356788888877764432 23333332110 0111122333333333322 23578889
Q ss_pred HHHHHHHhhcCC--hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 355 AAWTLGQIGKHS--VDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 355 a~~~L~~l~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
++..++|++.-- +.....++. .++|.|-..+.+. .+++|..++.||+.+.++
T Consensus 392 t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 392 TAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDA--VPEVRAVAARALGALLER 445 (569)
T ss_pred HHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHH
Confidence 999999998654 333332222 2556666666665 469999999999999765
No 89
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.51 E-value=2.1e-05 Score=76.85 Aligned_cols=326 Identities=15% Similarity=0.104 Sum_probs=205.0
Q ss_pred hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHH
Q psy12594 74 VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGG 151 (542)
Q Consensus 74 ~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~ 151 (542)
+..+..+......+.+..++-+++.+++..+.++++.+..+......+.+.+.--.++..|..+ +..-|++|++.+..
T Consensus 15 p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~ 94 (371)
T PF14664_consen 15 PTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRA 94 (371)
T ss_pred chhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHH
Confidence 5555555555556666655555669999999999999988877777777777767777777654 36678899998888
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHH
Q psy12594 152 LAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL 231 (542)
Q Consensus 152 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 231 (542)
+..-.... ..+..|++..++.+..+++..++..|+.+|..++-.+|+ .+...|++..+.+.+.++..++.+..+.
T Consensus 95 ~l~~~~~~--~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~ 169 (371)
T PF14664_consen 95 FLEIKKGP--KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLD 169 (371)
T ss_pred HHHhcCCc--ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHH
Confidence 87542211 112346788899999999999999999999999997775 4456999999999998876678889999
Q ss_pred HHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-------Ch--hHHHHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHh
Q psy12594 232 CLADIAKDSPSLASTIADGATTL-AVEHLTYP-------HG--LVQKNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRL 300 (542)
Q Consensus 232 ~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-------~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~l 300 (542)
++..+-... ..++.+...--++ ++.-+.+. +. +....+..++..+-+..+.....-.+. .++..|+..
T Consensus 170 ~lL~lLd~p-~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~ 248 (371)
T PF14664_consen 170 TLLYLLDSP-RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDS 248 (371)
T ss_pred HHHHHhCCc-chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHH
Confidence 999998775 4666555544444 44333322 22 345556666666655544433211122 578889999
Q ss_pred hhcCCccchHHHHHHHhHhhcC-ChHHHHHHH------hhCch---HHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-HH
Q psy12594 301 IDCNGGYNSLPAIMALGYMSAQ-SEQIAEQII------ELQGV---GSLQTILQCPHKEQLQVAAAWTLGQIGKHSV-DN 369 (542)
Q Consensus 301 L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~------~~~~l---~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~ 369 (542)
|..++++++...+..+..+-.- .+....... ..+-. ..+..-... ......... .-=.++..+.- -.
T Consensus 249 L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e-~~~~~~~~~-~~~~~l~~~y~aLl 326 (371)
T PF14664_consen 249 LRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAE-AKSILPHRS-SKRPNLVNHYLALL 326 (371)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccc-cccccCccc-cccccHHHHHHHHH
Confidence 9999988888888887776531 111111110 00110 000000000 000000000 00011111111 12
Q ss_pred HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 370 VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 370 ~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
...++++|.++.|+++..+.. +..+..+|...|+.+..
T Consensus 327 l~ili~~gL~~~L~~li~~~~-d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 327 LAILIEAGLLEALVELIESSE-DSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHHHHcChHHHHHHHHhcCC-CchHHHHHHHHHHHHHH
Confidence 334568899999999998763 46788888888887754
No 90
>KOG4535|consensus
Probab=98.51 E-value=3.2e-06 Score=81.01 Aligned_cols=384 Identities=15% Similarity=0.082 Sum_probs=201.9
Q ss_pred HHHHHHHHhcCCCC-chHHH-HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHH-------------
Q psy12594 19 CFVQTMSAFADKPS-TIHFL-KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVL------------- 81 (542)
Q Consensus 19 ~~~~~l~~l~~~~~-~~~~l-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~------------- 81 (542)
+.+++|+++-++.. .+-.+ .-..++..+.+++++.|+.++..++..+..+.+... ++....+.
T Consensus 126 q~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~ 205 (728)
T KOG4535|consen 126 QIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHL 205 (728)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCC
Confidence 45666777766433 22222 123456677888999999999999999999884333 44432221
Q ss_pred ----------hcC------------------c-----------------HHHHHHhhcc--CCHHHHHHHHHHHHHHhcC
Q psy12594 82 ----------ERN------------------L-----------------VALVLKDLTK--QNKHYKKTALHMLTCVAQQ 114 (542)
Q Consensus 82 ----------~~~------------------~-----------------l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~ 114 (542)
+.. . .......+.+ ....+|.++..+|..++.+
T Consensus 206 s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~ 285 (728)
T KOG4535|consen 206 SPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY 285 (728)
T ss_pred CChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH
Confidence 000 0 0011111221 2235677777777777654
Q ss_pred ChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc-----CChHHHHHHHHcCChHHHH------Hh-ccCCCHh
Q psy12594 115 DERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK-----DNKHFAERIVQCGALPPLV------QI-LASPQLS 182 (542)
Q Consensus 115 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~------~l-l~~~~~~ 182 (542)
-.-.+. +...+...+...+.+.+|.++..+..++..+.. ..|+..+.-...|.+-.+. .. -.+..+.
T Consensus 286 ~~~~~~-~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~T 364 (728)
T KOG4535|consen 286 FSMTQA-YLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPT 364 (728)
T ss_pred HHHHHH-HHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCC
Confidence 322222 111233445555667789999999988887752 2233222222222111111 00 1112245
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhCC---ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHH
Q psy12594 183 LKHAAAFALDGIVKHSPELAESASDCD---VIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVE 257 (542)
Q Consensus 183 ~~~~a~~~L~nl~~~~~~~~~~~~~~~---~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~ 257 (542)
.+...+.++.+|.....+ . ...| ..+.+..=..+. +.-++..|.+++.-+.-+..-............ +..
T Consensus 365 l~~s~Cdals~i~~~~f~---~-lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~ 440 (728)
T KOG4535|consen 365 LQASACDALSSILPEAFS---N-LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILM 440 (728)
T ss_pred chhHHHHHHhhcCchhhc---C-CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHH
Confidence 666677777777652211 0 0011 112222212211 222555566665555444332223333345556 667
Q ss_pred hhcCCChhHHHHHHHHHHHHhcC----ChH---HHHHHHhcCCHHHHHHhh---hcCCccchHHHHHHHhHhhcCCh---
Q psy12594 258 HLTYPHGLVQKNAATLLRDMCKH----NLR---LANLVVLAGGLDGLLRLI---DCNGGYNSLPAIMALGYMSAQSE--- 324 (542)
Q Consensus 258 lL~~~~~~v~~~a~~~L~~L~~~----~~~---~~~~~~~~~~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~--- 324 (542)
.+.+..-..+..++|++.|++.. .|. ..+.+. .-.+.++...- ...+.+++.++.++|+|+..--.
T Consensus 441 sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~ 519 (728)
T KOG4535|consen 441 SLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIE 519 (728)
T ss_pred HhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhh
Confidence 77777788999999999998643 222 122111 11122222221 22456799999999999864211
Q ss_pred HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 325 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
+.....+..+....+......+..-+++.+||++++|+..+..- ....=+...+++.|..++.+.. ++.||..|+.+|
T Consensus 520 ~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~AA~aL 598 (728)
T KOG4535|consen 520 KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIRAAAAL 598 (728)
T ss_pred hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeehhhhhh
Confidence 11111111222222222222222357999999999999655321 1112223357889999998765 789999999998
Q ss_pred HHHHhh
Q psy12594 404 NILIPK 409 (542)
Q Consensus 404 ~nl~~~ 409 (542)
.--.+.
T Consensus 599 ~vp~~r 604 (728)
T KOG4535|consen 599 SVPGKR 604 (728)
T ss_pred cCCCCc
Confidence 765444
No 91
>KOG1517|consensus
Probab=98.49 E-value=7.1e-06 Score=85.72 Aligned_cols=239 Identities=15% Similarity=0.122 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC-
Q psy12594 142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN- 220 (542)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~- 220 (542)
|..|+..|+.+..-.+......+.-|+.|.++++|+++..+++..-+.+=..|-.-++.+...++..++-..++..+..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3456667777777677767777777999999999999999999988888888877788888888888888888888875
Q ss_pred C--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHH
Q psy12594 221 D--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDG 296 (542)
Q Consensus 221 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~ 296 (542)
. +++-|..++.+|+.++.+-.-.++...+.+.+. .+..|.++ .+-++.-++-||+.|-.+.+.....=.+.++.+.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 578999999999999998777778888888899 88999886 6888999999999998777665554456788999
Q ss_pred HHHhhhcCCccchHHHHHHHhHhhcC----ChHHHHHH------------HhhCch---HHHHHhhcCCChhhHHHHHHH
Q psy12594 297 LLRLIDCNGGYNSLPAIMALGYMSAQ----SEQIAEQI------------IELQGV---GSLQTILQCPHKEQLQVAAAW 357 (542)
Q Consensus 297 Lv~lL~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~------------~~~~~l---~~L~~ll~~~~~~~v~~~a~~ 357 (542)
|..+|.++-++||.+|+.+||.+... .++..... ++.... -.++.++..++ +-++.+..-
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgs-plvr~ev~v 725 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGS-PLVRTEVVV 725 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccc-hHHHHHHHH
Confidence 99999999999999999999998764 22222221 222222 25566666654 588888999
Q ss_pred HHHHhhcCChHHHHHHHHcCChHH
Q psy12594 358 TLGQIGKHSVDNVTALCEENVLST 381 (542)
Q Consensus 358 ~L~~l~~~~~~~~~~l~~~~~l~~ 381 (542)
+|..++.+...+...+.-+...+.
T Consensus 726 ~ls~~~~g~~~~~~~va~n~~~~~ 749 (1387)
T KOG1517|consen 726 ALSHFVVGYVSHLKVVAGNYLLPE 749 (1387)
T ss_pred HHHHHHHhhHHHhHHHhhhhcccc
Confidence 999998888777666655444444
No 92
>KOG1058|consensus
Probab=98.49 E-value=9.1e-05 Score=75.17 Aligned_cols=346 Identities=15% Similarity=0.112 Sum_probs=194.8
Q ss_pred hccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q psy12594 93 LTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL 172 (542)
Q Consensus 93 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 172 (542)
|+++|+.+|-..+++|+.|-. ++.- ...+|.+...|++.++-+|..|..++..+-..... ++. .+-+.+
T Consensus 108 LQHPNEyiRG~TLRFLckLkE--~ELl----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~p-DapeLi 176 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE--PELL----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LIP-DAPELI 176 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc--HHHh----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hcC-ChHHHH
Confidence 456777777777766666532 1221 24667777888888888888888777776542111 111 111222
Q ss_pred HHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594 173 VQIL-ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA 251 (542)
Q Consensus 173 ~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 251 (542)
-.+| .+.++..+++|...|... +++...... ..-+.-+.+.++.++-..+..+...|...+..+. .
T Consensus 177 ~~fL~~e~DpsCkRNAFi~L~~~---D~ErAl~Yl-----~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~ 243 (948)
T KOG1058|consen 177 ESFLLTEQDPSCKRNAFLMLFTT---DPERALNYL-----LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----R 243 (948)
T ss_pred HHHHHhccCchhHHHHHHHHHhc---CHHHHHHHH-----HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----H
Confidence 2222 344677777775544432 343322211 1111222234566777777777777765543332 4
Q ss_pred hHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC-CccchHHHHHHHhHhhcCChHHHHH
Q psy12594 252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN-GGYNSLPAIMALGYMSAQSEQIAEQ 329 (542)
Q Consensus 252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 329 (542)
.+. +..+|.+.++.++..|+..|..|+.. |...+. ....+++++... +..+..-.+--|..+...+....+
T Consensus 244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~- 316 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ- 316 (948)
T ss_pred HHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-
Confidence 567 88899999999999999999888844 333221 223455555443 334444444444444433222211
Q ss_pred HHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 330 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
+.+--++.+|.+ ++-+++..+......|+.. +-+....++...+...--. . .+.+...|..-..++..+..
T Consensus 317 ----~l~mDvLrvLss-~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e-~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 317 ----GLIMDVLRVLSS-PDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--E-SDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred ----HHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--c-cccchHHHHHHHHHHHHHhh
Confidence 444456677776 4567888887766666543 3333322222211111000 0 01112345555566666543
Q ss_pred h-----CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCCCcHH-HHHHHHhccCc
Q psy12594 409 K-----CENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIA-PHLKTINACFP 480 (542)
Q Consensus 409 ~-----~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~~~~~-~a~~~l~~~~~ 480 (542)
+ +.+++.|++.+. +.++.....++..+..++.+.|+-|..+.+. -++.+-.+ ....+. -++|+++.|-.
T Consensus 389 ~Fp~~aatvV~~ll~fis-D~N~~aas~vl~FvrE~iek~p~Lr~~ii~~-l~~~~~~i-rS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 389 KFPEVAATVVSLLLDFIS-DSNEAAASDVLMFVREAIEKFPNLRASIIEK-LLETFPQI-RSSKICRGALWILGEYCE 463 (948)
T ss_pred cChHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHhCchHHHHHHHH-HHHhhhhh-cccccchhHHHHHHHHHh
Confidence 3 345788999998 8888888888999998888888887776654 22222222 344444 48888888864
No 93
>KOG1077|consensus
Probab=98.48 E-value=0.00056 Score=69.13 Aligned_cols=368 Identities=13% Similarity=0.123 Sum_probs=202.2
Q ss_pred hhhcCC--ChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc
Q psy12594 48 PLLADK--VPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED 124 (542)
Q Consensus 48 ~lL~s~--~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 124 (542)
++|-|. .+-+++.|+.+|.+|. .. ++... ..++...++.+|.+.+-.+...+...+..++...++..+..-.
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~--r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLF--RKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHH--hcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence 555443 3567888888888887 43 33322 2357788899998877777777777887787766555442111
Q ss_pred CChHHHHhhhc-------------CCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccCC----C---HhH
Q psy12594 125 KDLDSIISSLH-------------DFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASP----Q---LSL 183 (542)
Q Consensus 125 g~v~~Lv~lL~-------------~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~----~---~~~ 183 (542)
.++..|.+... -+.|.++...++.|.+.-. .++..+..+.+ +++.++...+++ + ...
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na 305 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNA 305 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhh
Confidence 12222222211 1347788778777777642 22333333322 233444444422 1 233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-C
Q psy12594 184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-Y 261 (542)
Q Consensus 184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~ 261 (542)
+.+.+.-.-+++.+-......+ ...+..|.+++.+....+|..++..++.|+.... ..+.+..+ .+ ++..|+ .
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkte 380 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccc
Confidence 3444444445554332222222 3556788899999999999999999999998753 44444433 67 888898 6
Q ss_pred CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC-ChHHHHHHHhhCchHHHH
Q psy12594 262 PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ-SEQIAEQIIELQGVGSLQ 340 (542)
Q Consensus 262 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~ 340 (542)
.|..+|+.++..|..+|..+ +++. ++..++++|.+.+..+++..+.-+.-|+.. ..+.. -.+..++
T Consensus 381 rDvSirrravDLLY~mcD~~--Nak~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~------WyVdviL 447 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDVS--NAKQ-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDYS------WYVDVIL 447 (938)
T ss_pred cchHHHHHHHHHHHHHhchh--hHHH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcc------hhHHHHH
Confidence 69999999999999999543 3332 345788999998888887766555545431 11111 1233333
Q ss_pred HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH---HhhCCC--chh
Q psy12594 341 TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL---IPKCEN--PKE 415 (542)
Q Consensus 341 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl---~~~~~~--i~~ 415 (542)
++++-..+ .+-...-+-+..+..++++..... . ..+.+.|..+.-++.+-+.+.+.|+.+ +..-.- -..
T Consensus 448 qLiriagd-~vsdeVW~RvvQiVvNnedlq~ya-a----k~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~ 521 (938)
T KOG1077|consen 448 QLIRIAGD-YVSDEVWYRVVQIVVNNEDLQGYA-A----KRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAV 521 (938)
T ss_pred HHHHHhcc-cccHHHHHHhheeEecchhhhHHH-H----HHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHH
Confidence 44332221 223333334445545554432221 1 233444444332334555555555544 222111 122
Q ss_pred hHHhhcC---CCCHHHHHHHHHHHHhhCCCChhh
Q psy12594 416 LEQMLLG---NVSEELLASILCAFAKILPCDPVA 446 (542)
Q Consensus 416 L~~lL~~---~~~~~v~~~~l~~l~~ll~~~~~~ 446 (542)
+..+|.. ..++-.+...+....+++...|+.
T Consensus 522 qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi 555 (938)
T KOG1077|consen 522 QFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEI 555 (938)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHhhChhh
Confidence 3334431 334445555555655555555543
No 94
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.3e-06 Score=83.07 Aligned_cols=191 Identities=11% Similarity=0.118 Sum_probs=149.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC
Q psy12594 143 ANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222 (542)
Q Consensus 143 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 222 (542)
..++.+|..+++.-...|..+.+..+++.|+++|.+|+..+.-.+...++|+.-.-...+..+.+.+++..++.++.+.|
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 34455666777766667777788888999999999988878888888999988766778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhh-HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHH---HHHHHh----cCC
Q psy12594 223 VNVKADAFLCLADIAKDSPSL-ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRL---ANLVVL----AGG 293 (542)
Q Consensus 223 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~----~~~ 293 (542)
..+|....|.+..+..++.+. +-.+....++. ++++..+++-.++..++..|+|++++...+ .....+ .-.
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 999999999999998765433 33555667788 999999999999999999999998754332 111111 124
Q ss_pred HHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594 294 LDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL 333 (542)
Q Consensus 294 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 333 (542)
+..+...+...+|-.....+.+|-+++..++...+.+++.
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence 5677777888888888888999988888777776666554
No 95
>KOG2259|consensus
Probab=98.44 E-value=6.6e-06 Score=81.98 Aligned_cols=261 Identities=14% Similarity=0.117 Sum_probs=166.1
Q ss_pred CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH---HHHhc--CCH
Q psy12594 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL---DGIVK--HSP 199 (542)
Q Consensus 125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L---~nl~~--~~~ 199 (542)
+++..+..+..+.|+.+|..|+..|..+.... ...+. +....++.+++++..+|..|+..+ +|.+- ...
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34555888888899999999999888887622 22222 256678899999999999885554 45441 001
Q ss_pred H-HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhh-cCCChhHHHH-HHHHHH
Q psy12594 200 E-LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHL-TYPHGLVQKN-AATLLR 275 (542)
Q Consensus 200 ~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL-~~~~~~v~~~-a~~~L~ 275 (542)
+ ....+. ..+...+...+.+.+..+|..|+.+|+.+-.-+.++.........+. +-..= .+..+.-... .-|-=+
T Consensus 272 e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 272 ESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 1 111122 23456777888888899999999999988665544443333222222 11100 0000000000 000000
Q ss_pred -HHhcC-----ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChh
Q psy12594 276 -DMCKH-----NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE 349 (542)
Q Consensus 276 -~L~~~-----~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 349 (542)
..... ..+....++..|+...++.-+.++-.++|.+|+..++.|+...+.... ..+..|++++.++ ..
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~ 424 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IE 424 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HH
Confidence 00000 112233456678888888888888888999999999999998887664 4677899999884 46
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL 406 (542)
Q Consensus 350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl 406 (542)
.+|..|.++|..|+.+ ..++..-++.++..|.+. ++++|.+.-..|++.
T Consensus 425 ~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 425 VVRLKAIFALTMISVH------LAIREEQLRQILESLEDR--SVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc
Confidence 8999999999998654 223445667888888877 579998776666654
No 96
>KOG0567|consensus
Probab=98.41 E-value=2.9e-05 Score=69.26 Aligned_cols=252 Identities=16% Similarity=0.198 Sum_probs=166.2
Q ss_pred HHHHhhhcC--CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 44 DLIVPLLAD--KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 44 ~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
..+.+.|.. ..-.-+..|+..|+++. . .+.+..+.+...+++...+...+++|+.+...
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~--~----------~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLL--G----------PAAIKAITKAFIDDSALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccC--C----------hHHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence 344445543 23345667777777777 2 23366677777777777888888898888744
Q ss_pred hhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 122 IEDKDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
.+++.|+..|.+.+ |.+|+.|..+|+.+.. . . .++.+-++.+++..++++.+..++..+-..+.
T Consensus 67 ---~Av~~l~~vl~desq~pmvRhEAaealga~~~-~-~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 67 ---DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P-E---------SLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ---hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h-h---------hHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 48999999998765 8999999999999872 2 2 37778888877778888888888876643111
Q ss_pred HHH-------HHh-----hhCCChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCCh
Q psy12594 200 ELA-------ESA-----SDCDVIPLLIKALNNDE--VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHG 264 (542)
Q Consensus 200 ~~~-------~~~-----~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~ 264 (542)
-.. ..+ ...+-+.-+-..+.+.+ .--|..+...|.|+... ..+. +++-+..++.
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E-----------eaI~al~~~l~~~Sa 201 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE-----------EAINALIDGLADDSA 201 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH-----------HHHHHHHHhcccchH
Confidence 000 000 01122444444444332 22455566666665332 2355 7777888888
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594 265 LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI 342 (542)
Q Consensus 265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 342 (542)
-.|..++.+|+.|-. .-.++.|...|.. +++-+|..|+.+||.++.. ..++.|.++
T Consensus 202 lfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~ 259 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEY 259 (289)
T ss_pred HHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHH
Confidence 899999999988753 3445666666655 4566999999999988653 456777888
Q ss_pred hcCCChhhHHHHHHHHHHHh
Q psy12594 343 LQCPHKEQLQVAAAWTLGQI 362 (542)
Q Consensus 343 l~~~~~~~v~~~a~~~L~~l 362 (542)
+..+ ++-+++.+..+|..+
T Consensus 260 ~~D~-~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 260 LGDE-ERVVRESCEVALDML 278 (289)
T ss_pred cCCc-HHHHHHHHHHHHHHH
Confidence 8774 456777777766555
No 97
>KOG1943|consensus
Probab=98.38 E-value=0.00022 Score=75.52 Aligned_cols=343 Identities=15% Similarity=0.101 Sum_probs=203.4
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
+++..|...+++.|..+|-.|++.+++++++-..+..+. ++...++++.. +++..-..++-+|+.++...--..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 677788888899999999999999999994333444443 44566666654 345666688999999885431111
Q ss_pred hHhhcCChHHHHhhhcCC--------CHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhccCCCHhHHHHHHHH
Q psy12594 120 GLIEDKDLDSIISSLHDF--------DPDTRANAALALGGLAKDNKHF-AERIVQCGALPPLVQILASPQLSLKHAAAFA 190 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL~~~--------~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~ 190 (542)
.. -..++|.++..|.-+ ...+|..|+.+++.+++..... -+.+++.=.-..|+..+-+++..+|++|..+
T Consensus 416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 10 013566666655322 2579999999999998644331 1222222223345566777888999999888
Q ss_pred HHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHh-hcCCChhHHH
Q psy12594 191 LDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEH-LTYPHGLVQK 268 (542)
Q Consensus 191 L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~l-L~~~~~~v~~ 268 (542)
+-......+.. ..+++. +..........+.++-..+..-....+.+.. .++. ++.. +.+-|+.+++
T Consensus 495 lqE~VGR~~n~------p~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~-----~~f~~L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 495 LQENVGRQGNF------PHGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYRE-----PVFNHLLTKKVCHWDVKIRE 562 (1133)
T ss_pred HHHHhccCCCC------CCchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHH-----HHHHHHHhcccccccHHHHH
Confidence 87655421100 122222 1111112233444443333322222222333 2333 3333 6667999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHH-------HHHHh---hCchHH
Q psy12594 269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA-------EQIIE---LQGVGS 338 (542)
Q Consensus 269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-------~~~~~---~~~l~~ 338 (542)
.++++|.+|+...|+... ...+++++....+.+...+.....+.+.+........ +..+. .-..+.
T Consensus 563 laa~aL~~Ls~~~pk~~a----~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~ 638 (1133)
T KOG1943|consen 563 LAAYALHKLSLTEPKYLA----DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPI 638 (1133)
T ss_pred HHHHHHHHHHHhhHHhhc----ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHH
Confidence 999999999987776543 5788888888888888766655555555443211111 11111 112222
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
....+..+...-++...+..+.++....+...+.....+.-..+.+.+.++ + .+|..|.|+++.+..
T Consensus 639 ~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~--n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 639 CDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP--N-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch--H-HHHHHHHHHHHHHHH
Confidence 233333332346777888888888776666555555555555566666443 2 799999999999863
No 98
>KOG0211|consensus
Probab=98.37 E-value=0.00018 Score=75.81 Aligned_cols=384 Identities=13% Similarity=0.106 Sum_probs=247.5
Q ss_pred hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
+....+...++.++..+.++..++.-+++++ .. ........+.++.+..+..++...++..|...+.++...-...
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a--~~--~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~ 310 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIA--KV--LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD 310 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHH--HH--HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence 3444555566667778889998888888888 43 2225557788889999988888889998888888765321111
Q ss_pred hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
. -....+.+.+++..++.+..++.........+... ..........++....++++...+.+.+++.-...++...
T Consensus 311 ~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 311 D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSA---VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHH---hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 0 12234678888888888877777666655555421 1112222244777888888888888888777777766532
Q ss_pred H-HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 199 P-ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 199 ~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
. +....+.....+|.+..+..+.+..++...+.....+.--.+ ..-.-....| ++..+++.++.|+.+..+.+..
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 2 233455556678888888888888888888777766654332 1111134566 7778888899999999987766
Q ss_pred HhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594 277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA 356 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 356 (542)
+-......-........+|.++.+-....+.++.+.++.+..++.... ..+.+...-+.+...+.+ ....++..|+
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa 539 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-HVYSIREAAA 539 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-hHHHHHHHHH
Confidence 543322222223344567777777777778888888888877765422 233333344444444444 3457888888
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------CCchhhHHhhcCCCCHHHH
Q psy12594 357 WTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------ENPKELEQMLLGNVSEELL 429 (542)
Q Consensus 357 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------~~i~~L~~lL~~~~~~~v~ 429 (542)
..+..++...... -.....++.++....+++ --.|.....++.-+..-. ..+|.+..+.. +..++|+
T Consensus 540 ~~l~~l~~~~G~~---w~~~~~i~k~L~~~~q~~--y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~-D~vanVR 613 (759)
T KOG0211|consen 540 RNLPALVETFGSE---WARLEEIPKLLAMDLQDN--YLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVK-DPVANVR 613 (759)
T ss_pred HHhHHHHHHhCcc---hhHHHhhHHHHHHhcCcc--cchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhcc-CCchhhh
Confidence 8877765332210 011224556566555542 367777777776554332 34788888888 8888999
Q ss_pred HHHHHHHHhhCCCC
Q psy12594 430 ASILCAFAKILPCD 443 (542)
Q Consensus 430 ~~~l~~l~~ll~~~ 443 (542)
..++..+..+.+.-
T Consensus 614 ~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 614 INVAKHLPKILKLL 627 (759)
T ss_pred hhHHHHHHHHHhhc
Confidence 99999988887654
No 99
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=3.8e-06 Score=81.65 Aligned_cols=290 Identities=11% Similarity=0.061 Sum_probs=189.5
Q ss_pred HHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCC
Q psy12594 60 AALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDF 137 (542)
Q Consensus 60 ~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~ 137 (542)
+++..|..++ .. .-.+.-+.+..+.+.|++.|+.++..+..-+...+++..-.-++.+. +...|.+..++.++.+.
T Consensus 408 a~~l~LkS~S--rSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 408 AIVLFLKSMS--RSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHhh--HHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 3445566665 44 56677777888999999999988888888888888887655557777 99999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH---HHHhhhCC----
Q psy12594 138 DPDTRANAALALGGLAKDNKHF-AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL---AESASDCD---- 209 (542)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~---~~~~~~~~---- 209 (542)
|..+|....|++.++.....+. +-.++..-++..++.+..++.-.++.+++..|.|+..++..+ .+..+...
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 9999999999999998654432 335556666999999999999999999999999999854331 22111111
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc-hHH-HHHhhc----C-----C--ChhHHHHHHHHHHH
Q psy12594 210 VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA-TTL-AVEHLT----Y-----P--HGLVQKNAATLLRD 276 (542)
Q Consensus 210 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~-L~~lL~----~-----~--~~~v~~~a~~~L~~ 276 (542)
....|++.+...+|-.....+..|.+++..+.+....+.+.. .+. +...|. . + .+.+...-.....+
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 235666777766666666678889888887766666665533 232 222221 1 1 11121111122222
Q ss_pred HhcCChHHHHHHHhcCCHHHHHHhh----------hcCCccchHHHHHHHhHhhc---------CChHHHHHHHhhCchH
Q psy12594 277 MCKHNLRLANLVVLAGGLDGLLRLI----------DCNGGYNSLPAIMALGYMSA---------QSEQIAEQIIELQGVG 337 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~~i~~Lv~lL----------~~~~~~~~~~a~~~L~~l~~---------~~~~~~~~~~~~~~l~ 337 (542)
+..+ .+.+.+.+..- ..++.+...++.|.+.|+.- ...+.++.+.+.|+-+
T Consensus 646 l~e~----------~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e 715 (743)
T COG5369 646 LSEN----------SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIRE 715 (743)
T ss_pred cccc----------ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHH
Confidence 2221 13333333211 11233466677777777541 2225666777767766
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHh
Q psy12594 338 SLQTILQCPHKEQLQVAAAWTLGQI 362 (542)
Q Consensus 338 ~L~~ll~~~~~~~v~~~a~~~L~~l 362 (542)
.+..+..++ ...+|+.+--+|.++
T Consensus 716 ~l~k~q~~~-Sl~vrek~~taL~~l 739 (743)
T COG5369 716 WLVKIQAKD-SLIVREKIGTALENL 739 (743)
T ss_pred HHHHHhccC-cHHHHHHHHHHHHhh
Confidence 666666664 457888888777766
No 100
>KOG0211|consensus
Probab=98.34 E-value=7.4e-05 Score=78.56 Aligned_cols=399 Identities=14% Similarity=0.107 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~ 95 (542)
+|+.+.+-+.+.+.--. ......+.+|.+..+..++...+|..|...+..+....+.+. . ....+.+.++....+
T Consensus 253 Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d--~~~~~~~~l~~~~~d 327 (759)
T KOG0211|consen 253 VRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-D--VVKSLTESLVQAVED 327 (759)
T ss_pred hHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-h--hhhhhhHHHHHHhcC
Confidence 45555565666555222 255667899999999998889999999999998883333221 1 123467788888888
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHH
Q psy12594 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQ 174 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ 174 (542)
.+..++.........+...-.. .......++....++++...+.+...+.-...++. .+......+....++|.+..
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~ 405 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQV 405 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHH
Confidence 8888888877776666532111 11122356777888887777777666655555542 23233455556666888888
Q ss_pred hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594 175 ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254 (542)
Q Consensus 175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 254 (542)
+..+.+..++.+.+....++.--.+. ..-+ ....|.+...+++..+.++.+..+.+..+-......-........+|
T Consensus 406 lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp 482 (759)
T KOG0211|consen 406 LVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLP 482 (759)
T ss_pred HHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhh
Confidence 88888888888887777766543331 1111 44567888888888999999999888666544332223344456667
Q ss_pred -HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594 255 -AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL 333 (542)
Q Consensus 255 -L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 333 (542)
+..+-......++....+.+..++...- . .+.+...-+.+...+.+....++.+|...+..++.... .+. ...
T Consensus 483 ~i~el~~d~~wRvr~ail~~ip~la~q~~--~-~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w-~~~ 556 (759)
T KOG0211|consen 483 AIVELAEDLLWRVRLAILEYIPQLALQLG--V-EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEW-ARL 556 (759)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHhhh--h-HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cch-hHH
Confidence 6666666677888888888777764332 1 12222223333344444455678888877776664222 111 112
Q ss_pred CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh----
Q psy12594 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK---- 409 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~---- 409 (542)
..++.++.....+ .-..|...+.++.-++. -.-+.+.....+|.+..+..++ .++||..++..|..+...
T Consensus 557 ~~i~k~L~~~~q~-~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~~ 630 (759)
T KOG0211|consen 557 EEIPKLLAMDLQD-NYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDES 630 (759)
T ss_pred HhhHHHHHHhcCc-ccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcchH
Confidence 3455555555553 23566666666665531 2233455556889999998887 469999999998888532
Q ss_pred ---CCCchhhHHhhcCCCCHHHHHHHHHHHH
Q psy12594 410 ---CENPKELEQMLLGNVSEELLASILCAFA 437 (542)
Q Consensus 410 ---~~~i~~L~~lL~~~~~~~v~~~~l~~l~ 437 (542)
....|.+..+.+ +.+.++...+..++.
T Consensus 631 ~~~~~v~pll~~L~~-d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 631 VRDEEVLPLLETLSS-DQELDVRYRAILAFG 660 (759)
T ss_pred HHHHHHHHHHHHhcc-CcccchhHHHHHHHH
Confidence 223455555555 666666555544443
No 101
>KOG1060|consensus
Probab=98.33 E-value=0.00021 Score=73.02 Aligned_cols=367 Identities=14% Similarity=0.090 Sum_probs=186.9
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhh
Q psy12594 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIE 123 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 123 (542)
..+-+-|++.++.+|..|+++|..+- .. ++..=.+-.+-++..+..+.+|..|+.++..+=+-+++...
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIR--vp------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--- 179 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIR--VP------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--- 179 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcc--hh------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH---
Confidence 33444455566666666666655554 11 00000111223344456677777777777766544433322
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC---HH
Q psy12594 124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS---PE 200 (542)
Q Consensus 124 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~---~~ 200 (542)
..++.+-.+|.+.+|.+.-.|+.+...++- +..+.+.+. ...+++++.+-+.=-|......|..-|++. |.
T Consensus 180 -qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLIHkn--yrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 180 -QLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLIHKN--YRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred -HHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHhhHH--HHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 233455556666667777667666666653 212222211 445555555433223333333443333311 10
Q ss_pred HHHH---------------------hhhCCCh----HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-
Q psy12594 201 LAES---------------------ASDCDVI----PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL- 254 (542)
Q Consensus 201 ~~~~---------------------~~~~~~i----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~- 254 (542)
.... +....-+ ...-.++.+.++.+.-.++.+++.++-... . ..++.
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-~------~~i~ka 326 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-V------TKIAKA 326 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-H------HHHHHH
Confidence 0000 0000111 222345557788888999999999875531 1 24566
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChHH-----------------HH--------HHHhcC----CHHHHHHhhhcCC
Q psy12594 255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRL-----------------AN--------LVVLAG----GLDGLLRLIDCNG 305 (542)
Q Consensus 255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~-----------------~~--------~~~~~~----~i~~Lv~lL~~~~ 305 (542)
|+.+|.++ .+++...+..+..++...+.. .+ .+.+.. ++..+..++++.+
T Consensus 327 LvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d 405 (968)
T KOG1060|consen 327 LVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD 405 (968)
T ss_pred HHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Confidence 77776654 334444444444444332211 10 111112 2344455666666
Q ss_pred ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHH
Q psy12594 306 GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSK 385 (542)
Q Consensus 306 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l 385 (542)
.++...++.+||..+....... ...+..|+.++.++ +..+..++...+..|...+|..-.. ++..|.++
T Consensus 406 ~~faa~aV~AiGrCA~~~~sv~-----~tCL~gLv~Llssh-de~Vv~eaV~vIk~Llq~~p~~h~~-----ii~~La~l 474 (968)
T KOG1060|consen 406 RSFAAAAVKAIGRCASRIGSVT-----DTCLNGLVQLLSSH-DELVVAEAVVVIKRLLQKDPAEHLE-----ILFQLARL 474 (968)
T ss_pred hhHHHHHHHHHHHHHHhhCchh-----hHHHHHHHHHHhcc-cchhHHHHHHHHHHHHhhChHHHHH-----HHHHHHHH
Confidence 6777788888887765443322 24566788888885 4578888888888887776653222 34556666
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhhC-CCch----hhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhh
Q psy12594 386 ITQTCVSDNLKSKCKNALNILIPKC-ENPK----ELEQMLLGNVSEELLASILCAFAKILPCDPVARR 448 (542)
Q Consensus 386 l~~~~~~~~v~~~a~~aL~nl~~~~-~~i~----~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~ 448 (542)
+.+-. -+..|....|.++-.+... ...| .+..-+. +..+.+...++....++.-.+.++-+
T Consensus 475 ldti~-vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs-~E~~evKlQILnL~aKLyl~~~~~~k 540 (968)
T KOG1060|consen 475 LDTIL-VPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFS-DEGDEVKLQILNLSAKLYLTNIDQTK 540 (968)
T ss_pred hhhhh-hhhhhceeeeeehhhhhhcchhchHHHHHHHHhhc-cccchhhHHHHHhhhhheEechhhHH
Confidence 64432 2345555566655543221 1112 2222233 44556666777766666655554433
No 102
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.31 E-value=8.8e-05 Score=74.88 Aligned_cols=262 Identities=15% Similarity=0.155 Sum_probs=180.5
Q ss_pred HHHHHHhcCCCCchHHHHhCCchHHHHhhh----------cCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHH
Q psy12594 21 VQTMSAFADKPSTIHFLKDLNVVDLIVPLL----------ADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALV 89 (542)
Q Consensus 21 ~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL----------~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~L 89 (542)
+++|.-++.++.+...+....++..|..+- .+.++.+...|+++|+|+. .. +..++.+.+.|+.+.+
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~l--f~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNAL--FLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHH--hCCHHHHHHHHHcCcHHHH
Confidence 567888999999999999888888888776 2456899999999999999 76 8899999999999999
Q ss_pred HHhhccC-----CHHHHHHHHHHHHHHhcCChhhhh-Hh-hcCChHHHHhhhcC-----------------CCHHHHHHH
Q psy12594 90 LKDLTKQ-----NKHYKKTALHMLTCVAQQDERCAG-LI-EDKDLDSIISSLHD-----------------FDPDTRANA 145 (542)
Q Consensus 90 v~~L~~~-----~~~~~~~a~~~L~~l~~~~~~~~~-~~-~~g~v~~Lv~lL~~-----------------~~~~~~~~a 145 (542)
+..|+.. +.++.....++|.-++...+..+. ++ +.+++..++..+.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999865 788999999999888877666665 44 55777777766521 134556778
Q ss_pred HHHHHHhhcCChHHHH-HHHHc--CChHHHHHhc---cCC--CHhHHHHHHHHHHHHhcCCHHH-------HH----Hhh
Q psy12594 146 ALALGGLAKDNKHFAE-RIVQC--GALPPLVQIL---ASP--QLSLKHAAAFALDGIVKHSPEL-------AE----SAS 206 (542)
Q Consensus 146 ~~~L~~l~~~~~~~~~-~i~~~--g~i~~L~~ll---~~~--~~~~~~~a~~~L~nl~~~~~~~-------~~----~~~ 206 (542)
++.+.|+....+.... ..... .++..+..++ ..+ .......+..+|.|+--...+. .. ...
T Consensus 160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~ 239 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD 239 (446)
T ss_pred HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence 8899999854444222 11110 2233444442 111 2567778888888874322211 00 011
Q ss_pred hCCChHHHHHhhcC----C----CHHHHHHHHHHHHHHhcCChhhHHHHHh---------------hchHH--HHHhhcC
Q psy12594 207 DCDVIPLLIKALNN----D----EVNVKADAFLCLADIAKDSPSLASTIAD---------------GATTL--AVEHLTY 261 (542)
Q Consensus 207 ~~~~i~~L~~ll~~----~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~---------------~~~i~--L~~lL~~ 261 (542)
....+..|+.+|.. . -.+.....+.+|.++++.+...++.+.. ...++ |+.++.+
T Consensus 240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 22345666666641 1 1356777888899998876555554433 23344 8999999
Q ss_pred CChhHHHHHHHHHHHHhcCChHH
Q psy12594 262 PHGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 262 ~~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
..+.++..+...|..||..++..
T Consensus 320 ~~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred CCchHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999766543
No 103
>KOG4646|consensus
Probab=98.27 E-value=7.4e-06 Score=64.93 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=98.6
Q ss_pred hhhHHH-HHHHHHH-----HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH
Q psy12594 3 RKSVKN-SIDHYQR-----ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI 76 (542)
Q Consensus 3 ~~~~~~-~~~~~~~-----~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~ 76 (542)
|.+-.| ..++|+. ++.+.+.-|+|++.||.|...+++.+++..++.-|..++......+...|++++ -++.+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC--~d~~n 91 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC--LDKTN 91 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc--cChHH
Confidence 334444 4456654 577888899999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh
Q psy12594 77 RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE 116 (542)
Q Consensus 77 ~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~ 116 (542)
...|.+.+++|.++..++++.......++.++..++....
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999999886553
No 104
>KOG4646|consensus
Probab=98.27 E-value=1.6e-05 Score=63.09 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=106.3
Q ss_pred hHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 127 LDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 127 v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
+..|+.-.+ ..+.+.++....-|+|++. +|.+...+.+..+++.++..+..++..+.+.+...|+|+|- ++.+...+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHH
Confidence 444554443 4467888888888888887 66778999999999999999999999999999999999999 78899999
Q ss_pred hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 254 (542)
.+.+++|.++..++++...+...++.++..++...-..++.+....++.
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~ 144 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR 144 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence 9999999999999999999999999999999887655666666555555
No 105
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.27 E-value=6.2e-05 Score=74.60 Aligned_cols=327 Identities=14% Similarity=0.117 Sum_probs=192.5
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChH---HHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVD---IRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~---~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
++...+++|++..|.+|..|+...+.|+ .--. -...+.+.|. .|.+.|....+++--..+.+++.+-+.. ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~--~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~-~~ 679 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLA--KVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVH-RF 679 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHH--HHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhh-cc
Confidence 4566778889999999999999888887 2211 0122333333 3566777778888777666666654221 11
Q ss_pred hh--HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH---HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594 119 AG--LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF---AERIVQCGALPPLVQILASPQLSLKHAAAFALDG 193 (542)
Q Consensus 119 ~~--~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 193 (542)
+. ---.|++|.|...|++....+....+..++.++...|++ ++.+. +---|+++|++.+.++|+.|..+++-
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 11 113489999999999999999999999999998766652 22221 12247888888999999999999998
Q ss_pred HhcCC-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594 194 IVKHS-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAA 271 (542)
Q Consensus 194 l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~ 271 (542)
|+..- | ..++..|++-|+..+-..|....-+++-.++.+.. ..++| |+.=...++..|+...+
T Consensus 757 Is~aiGP--------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvL 821 (975)
T COG5181 757 ISRAIGP--------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVL 821 (975)
T ss_pred HHhhcCH--------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHH
Confidence 88721 2 22334444444433333333333334333332211 24566 66666666778888888
Q ss_pred HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHH--HHHHhhCchHHHH-HhhcCCCh
Q psy12594 272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA--EQIIELQGVGSLQ-TILQCPHK 348 (542)
Q Consensus 272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~-~ll~~~~~ 348 (542)
.+++.+-....+....- -.-..|.|-..|.+.++..+..|...|..|+-+++... ...+. .+..|. +++.. .
T Consensus 822 kam~fmFeyig~~s~dY-vy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~--s 896 (975)
T COG5181 822 KAMCFMFEYIGQASLDY-VYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEP--S 896 (975)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCC--C
Confidence 88877764332222111 12445667778888898899999999999887654321 11111 222222 22222 2
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 349 EQLQVAAAWTLGQIGKHSVDNVTALCEEN-VLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
+.+.......+-.+. ..+..| .+..+.+-|-+++ ..|| ++.|..-|..
T Consensus 897 Phvi~~~~Eg~e~~~--------~~lg~g~~m~Yv~qGLFHPs--~~VR-k~ywtvyn~m 945 (975)
T COG5181 897 PHVIQSFDEGMESFA--------TVLGSGAMMKYVQQGLFHPS--STVR-KRYWTVYNIM 945 (975)
T ss_pred cHHHHHHHHHHHHHH--------HHhccHHHHHHHHHhccCch--HHHH-HHHHHHHhhh
Confidence 344433333332221 112222 2355566666663 3455 5778777775
No 106
>KOG2734|consensus
Probab=98.21 E-value=0.0012 Score=63.40 Aligned_cols=239 Identities=14% Similarity=0.154 Sum_probs=178.0
Q ss_pred HHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--------hHHHHHHHhcCcHHHHH
Q psy12594 19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--------VDIRQEVLERNLVALVL 90 (542)
Q Consensus 19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--------~~~~~~i~~~~~l~~Lv 90 (542)
..+|-+.-+++-|.....+++.++++.|+.||.+++.++....+..|..|....- +...+.+++.++++.|+
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 3578899999999999999999999999999999999999999999999983211 24567788889999999
Q ss_pred HhhccCC------HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHHH
Q psy12594 91 KDLTKQN------KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFAE 161 (542)
Q Consensus 91 ~~L~~~~------~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~ 161 (542)
+.+..=+ ..-...++.++-|+....+.... +++.|.+.-|+.-+... -...+..|..+|.-+...+.+.+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 9876422 23345667778888888878877 88888888777644332 245667788888888877777777
Q ss_pred HHHHcCChHHHHHhcc-----CC----CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHH
Q psy12594 162 RIVQCGALPPLVQILA-----SP----QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLC 232 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~-----~~----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 232 (542)
..-...++..+++-+. +| ..+.-++...+|+.+.. .++++..+....+++...-+++. ....+..++.+
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 7777788998888763 22 25666777778887777 57788888878888877666664 45577788888
Q ss_pred HHHHhcCCh--hhHHHHHhhchHH-HHHhh
Q psy12594 233 LADIAKDSP--SLASTIADGATTL-AVEHL 259 (542)
Q Consensus 233 L~~l~~~~~--~~~~~~~~~~~i~-L~~lL 259 (542)
|-....+.+ ++...+++..++. ++.+.
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 888776654 3444555555555 54443
No 107
>KOG1077|consensus
Probab=98.20 E-value=0.0021 Score=65.14 Aligned_cols=330 Identities=14% Similarity=0.133 Sum_probs=197.7
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc
Q psy12594 46 IVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED 124 (542)
Q Consensus 46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 124 (542)
-++||+++-...++-.-..+.-|. +. .+..+. ++..+..-|.+.|+.....|+.+++++...+ ..+-
T Consensus 79 aV~LLss~kysEKqIGYl~is~L~--n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~re--~~ea--- 146 (938)
T KOG1077|consen 79 AVNLLSSNKYSEKQIGYLFISLLL--NENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGSRE--MAEA--- 146 (938)
T ss_pred HHHHhhcCCccHHHHhHHHHHHHH--hcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHHH---
Confidence 456666655444444555555555 22 222111 2334444566778888889999999986432 2221
Q ss_pred CChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594 125 KDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA 202 (542)
Q Consensus 125 g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~ 202 (542)
.-+-+-++|-+++ +-++..|+-||..+-+.+|+.. -..+-...++.+|.+.+..+..++...+.-|+...|+..
T Consensus 147 -~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 147 -FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred -hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence 1122335665554 7788999999999887665521 112446789999999888888888888888888776654
Q ss_pred HHhhhCCChHHHHHhhcC-------------CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCC--Ch-
Q psy12594 203 ESASDCDVIPLLIKALNN-------------DEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYP--HG- 264 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~~-------------~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~--~~- 264 (542)
...+ ...+..|..+... +.|=++...+++|.+.-... +..+. .-..+++ ++...+.+ ..
T Consensus 223 k~~~-~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~--~l~evl~~iLnk~~~~~~~k~ 299 (938)
T KOG1077|consen 223 KTCL-PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA--RLNEVLERILNKAQEPPKSKK 299 (938)
T ss_pred hhhH-HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH--HHHHHHHHHHhccccCccccc
Confidence 4333 2223333333321 23446777777777663221 11222 2224555 55555533 11
Q ss_pred ----hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHH
Q psy12594 265 ----LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQ 340 (542)
Q Consensus 265 ----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 340 (542)
..+..++.-..+|+.+-...-+.+ ...+..|-.+|.+....+|--|+..+..|+..... .+.+-. . ...++
T Consensus 300 vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~-h-~d~Ii 374 (938)
T KOG1077|consen 300 VQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKK-H-QDTII 374 (938)
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHH-H-HHHHH
Confidence 222233333334544432222222 24677888999999999999999999998876332 233333 2 77788
Q ss_pred HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 341 TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 341 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
..|+.+.+..+|..|.-.|..+|.. ++.+.+ +.-+++.|.+. +..+|++-+.-+.-+.+
T Consensus 375 ~sLkterDvSirrravDLLY~mcD~--~Nak~I-----V~elLqYL~tA--d~sireeivlKvAILaE 433 (938)
T KOG1077|consen 375 NSLKTERDVSIRRRAVDLLYAMCDV--SNAKQI-----VAELLQYLETA--DYSIREEIVLKVAILAE 433 (938)
T ss_pred HHhccccchHHHHHHHHHHHHHhch--hhHHHH-----HHHHHHHHhhc--chHHHHHHHHHHHHHHH
Confidence 8999778889999999999999643 344433 45567777765 34788876655554543
No 108
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.19 E-value=3.4e-06 Score=53.82 Aligned_cols=41 Identities=37% Similarity=0.647 Sum_probs=38.1
Q ss_pred ChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 156 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
++++++.+++.|++|.|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999974
No 109
>KOG2734|consensus
Probab=98.18 E-value=0.00081 Score=64.45 Aligned_cols=229 Identities=15% Similarity=0.123 Sum_probs=170.2
Q ss_pred CChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC---------hHHHHHHHHcCChHHHHHhccCCC---
Q psy12594 114 QDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN---------KHFAERIVQCGALPPLVQILASPQ--- 180 (542)
Q Consensus 114 ~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~L~~ll~~~~--- 180 (542)
.-|+.-- +++.++++.|+.+|.+++.++-...+..|..+...+ ......+++.++++.|++-+..-+
T Consensus 113 t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsv 192 (536)
T KOG2734|consen 113 TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESV 192 (536)
T ss_pred cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcc
Confidence 3445554 889999999999999999999999999999887321 245677888899999999887644
Q ss_pred ---HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-
Q psy12594 181 ---LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL- 254 (542)
Q Consensus 181 ---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~- 254 (542)
..-...++..+.|+..-.++.+..+++.|.+.-|+.-+... -..-...|..+++-+-.++.+.+.....-.++.
T Consensus 193 keea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~ 272 (536)
T KOG2734|consen 193 KEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDV 272 (536)
T ss_pred hhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHH
Confidence 33455677888999998899999999888888887755432 334556677778877777766777666667777
Q ss_pred HHHhhc-----CC----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh-
Q psy12594 255 AVEHLT-----YP----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE- 324 (542)
Q Consensus 255 L~~lL~-----~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~- 324 (542)
++.-+. ++ ..+..++...+|+.+........ .+....+++-..-+++. ....+..++.+|-....+.+
T Consensus 273 lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~-~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~g 350 (536)
T KOG2734|consen 273 LLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRE-RFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEG 350 (536)
T ss_pred HHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhh-hhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCc
Confidence 666553 21 35678888888888876555544 46666777666666665 44557788899988887766
Q ss_pred -HHHHHHHhhCchHHHHHhhc
Q psy12594 325 -QIAEQIIELQGVGSLQTILQ 344 (542)
Q Consensus 325 -~~~~~~~~~~~l~~L~~ll~ 344 (542)
..+..+++..++..+..++.
T Consensus 351 t~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 351 TPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred hHHHHHHHHHHhHHHHHHHHh
Confidence 77888888888888887766
No 110
>KOG0915|consensus
Probab=98.18 E-value=0.00092 Score=73.33 Aligned_cols=295 Identities=16% Similarity=0.154 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC
Q psy12594 142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221 (542)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~ 221 (542)
|.-|+.-++.++....+ +..-.-..+||.|.++=-+|++.+|.....+=..|..+.....+... ..++.-|+.-+.+.
T Consensus 974 k~GaAfGf~~i~~~a~~-kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGE-KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK 1051 (1702)
T ss_pred ccchhhchHHHHHHHHH-hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch
Confidence 44455556666532211 11111124588888888889999988777666666664444444433 45556666667778
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhhcCCChhHHHHHHH---HHHHHhcCChHHHHHHHhcCCHH
Q psy12594 222 EVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHLTYPHGLVQKNAAT---LLRDMCKHNLRLANLVVLAGGLD 295 (542)
Q Consensus 222 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL~~~~~~v~~~a~~---~L~~L~~~~~~~~~~~~~~~~i~ 295 (542)
...+|+.+|-||..|-+..+ ..+ +.+ ..+.. ++..+.+-.+.||..+-. +|..++...-+...-.....++.
T Consensus 1052 ewRVReasclAL~dLl~g~~-~~~-~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRP-FDQ-VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCC-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence 89999999999999998764 222 221 24455 566666657778776544 44444422100000000112344
Q ss_pred HHHHhhhc-----CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH----------HHHHHHH
Q psy12594 296 GLLRLIDC-----NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV----------AAAWTLG 360 (542)
Q Consensus 296 ~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~----------~a~~~L~ 360 (542)
.++.+|-+ .-+++|..++.++..++.+......... ...++.|++....-.+..+-. +|+-.+.
T Consensus 1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R 1208 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLR 1208 (1702)
T ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHH
Confidence 44544433 3446888899999999877665433322 256666666665533222222 2222222
Q ss_pred -HhhcCChH--HHHHHH---H----cCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC---------chhhHHhhc
Q psy12594 361 -QIGKHSVD--NVTALC---E----ENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN---------PKELEQMLL 421 (542)
Q Consensus 361 -~l~~~~~~--~~~~l~---~----~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~---------i~~L~~lL~ 421 (542)
+.+.++|. .....+ + ...+|.++++++.+- .-..|..++..++-+..+++. +..+...++
T Consensus 1209 ~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sV-gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~ 1287 (1702)
T KOG0915|consen 1209 ASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSV-GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAK 1287 (1702)
T ss_pred HhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccc
Confidence 12222221 111111 1 147788888888764 456888889889888776532 334444445
Q ss_pred CCCCHHHHHHHHHHHHhhCCCC
Q psy12594 422 GNVSEELLASILCAFAKILPCD 443 (542)
Q Consensus 422 ~~~~~~v~~~~l~~l~~ll~~~ 443 (542)
+.++.+.+....+...++...
T Consensus 1288 -dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1288 -DRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred -cccHHHHHHHHHHHHHHHhcC
Confidence 777778887777777776665
No 111
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.0004 Score=71.74 Aligned_cols=236 Identities=14% Similarity=0.047 Sum_probs=168.0
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH---HHHhhhCCChHHHHHhhcC-------CCHHHHHHHHHHHHHHhc
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPEL---AESASDCDVIPLLIKALNN-------DEVNVKADAFLCLADIAK 238 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~---~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~ 238 (542)
+...+++|+..+.+-|-.++..+.++...++.. ++.+.+.=+.+.+-++|.. +....+.-++.+|..+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 566788898888777888888999999866532 3357777777888888886 345688889999999998
Q ss_pred CChhhHHHHHhhchHH-HHHhhcCCCh-hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHH
Q psy12594 239 DSPSLASTIADGATTL-AVEHLTYPHG-LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL 316 (542)
Q Consensus 239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 316 (542)
.. +....-.--+-+| |+..+...+. .+...+..+|..++ ..++..+.+.+.|+++.|.+.+.+ .+.....|+.++
T Consensus 87 ~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 DP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred Ch-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 53 4442222236789 9999988866 99999999999999 778888889999999999999988 556678888888
Q ss_pred hHhhcCChHHHHH---HHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH-----HHHHHHcCChHHHHHHHhc
Q psy12594 317 GYMSAQSEQIAEQ---IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN-----VTALCEENVLSTLLSKITQ 388 (542)
Q Consensus 317 ~~l~~~~~~~~~~---~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~l~~L~~ll~~ 388 (542)
.+++......... -.-..+++.+-..+.... ...+...+..|..+....+.. ...-+-..+...+..++.+
T Consensus 164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 8887643311110 000135556666666543 367778899999987665321 1222333456667777776
Q ss_pred CCCChHHHHHHHHHHHHHHhh
Q psy12594 389 TCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 389 ~~~~~~v~~~a~~aL~nl~~~ 409 (542)
. ..+.-|..+......+++.
T Consensus 243 r-~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 243 R-LTPSQRDPALNLAASLLDL 262 (543)
T ss_pred C-CCHHHHHHHHHHHHHHHHH
Confidence 4 4677788777777777543
No 112
>KOG1789|consensus
Probab=98.16 E-value=0.00042 Score=72.93 Aligned_cols=314 Identities=16% Similarity=0.163 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHhcCChhhhhHh-----hcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q psy12594 100 YKKTALHMLTCVAQQDERCAGLI-----EDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLV 173 (542)
Q Consensus 100 ~~~~a~~~L~~l~~~~~~~~~~~-----~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 173 (542)
-...++.+|.|+....|+...+. --|..+.+...+.. .++.++..|+.++..+.. +.++...+...|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 45678889999988887776632 23677888777764 468899999988877665 677889999999999999
Q ss_pred HhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC---hhhHHHHH-
Q psy12594 174 QILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDS---PSLASTIA- 248 (542)
Q Consensus 174 ~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~- 248 (542)
.+|.+. |+.|+.++.+|..|++ +++......+.|++..+..++. +.++..|.+++..++.+..+. |...-.++
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 998854 6889999999999998 6777777788888888777766 557889999999999997643 21111111
Q ss_pred -------h--hchHH-HHHhhcCC--Ch------hHHHHHHHHHHHHhc--------CC------hHH------------
Q psy12594 249 -------D--GATTL-AVEHLTYP--HG------LVQKNAATLLRDMCK--------HN------LRL------------ 284 (542)
Q Consensus 249 -------~--~~~i~-L~~lL~~~--~~------~v~~~a~~~L~~L~~--------~~------~~~------------ 284 (542)
. ....+ .++.+... ++ ..+......+..+.. ++ |+.
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 0 11123 44555443 22 223333333333221 10 100
Q ss_pred ------HHHHHhc------------CCHHHHHHhhhcCCccc--hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhc
Q psy12594 285 ------ANLVVLA------------GGLDGLLRLIDCNGGYN--SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQ 344 (542)
Q Consensus 285 ------~~~~~~~------------~~i~~Lv~lL~~~~~~~--~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 344 (542)
...+.+. +.++.+.+++..+++.. ...-..++-.|....+.....+-..|-+|.++..+.
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~ 2057 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC 2057 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH
Confidence 0111111 13455566666655542 222233455566777888888888899999998888
Q ss_pred CCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh-----------hCCCc
Q psy12594 345 CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP-----------KCENP 413 (542)
Q Consensus 345 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~-----------~~~~i 413 (542)
..+. .+-..|.+.|..++ .+.-.+..+.....+..++..++.. .+.---|+.+|..+.+ +++.+
T Consensus 2058 ~~n~-s~P~SaiRVlH~Ls-en~~C~~AMA~l~~i~~~m~~mkK~---~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2058 LQNT-SAPRSAIRVLHELS-ENQFCCDAMAQLPCIDGIMKSMKKQ---PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred hcCC-cCcHHHHHHHHHHh-hccHHHHHHhccccchhhHHHHHhc---chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 7553 66678999999994 4556677777777788888888865 2555567777777753 36778
Q ss_pred hhhHHhhc
Q psy12594 414 KELEQMLL 421 (542)
Q Consensus 414 ~~L~~lL~ 421 (542)
|.|..||.
T Consensus 2133 pyLL~LLd 2140 (2235)
T KOG1789|consen 2133 PYLLQLLD 2140 (2235)
T ss_pred HHHHHHhc
Confidence 89988887
No 113
>KOG1240|consensus
Probab=98.16 E-value=4.9e-05 Score=80.91 Aligned_cols=283 Identities=14% Similarity=0.076 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHh
Q psy12594 15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKD 92 (542)
Q Consensus 15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~ 92 (542)
..|..+++.|..++..-..-..+ ..++|.++.++.++++.||..|+.+|..+..... +..-..+.-.=++|.|-.+
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 45778888888888743333223 4689999999999999999999999998883322 2222223233456666677
Q ss_pred hcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q psy12594 93 LTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP 171 (542)
Q Consensus 93 L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 171 (542)
+.+ ....+|..-+..|..++...- .+.+.+.-.....++++++.+. .... ..+.+ .+.+++ ++-..
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~---rFle~~q~~~~~g~~n~~nset-------~~~~-~~~~~-~~~L~~-~V~~~ 582 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAY---RFLELTQELRQAGMLNDPNSET-------APEQ-NYNTE-LQALHH-TVEQM 582 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHH---HHHHHHHHHHhcccccCccccc-------cccc-ccchH-HHHHHH-HHHHH
Confidence 766 445666666677777764221 1222111122222344433320 0000 00111 122221 22344
Q ss_pred HHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh-hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy12594 172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESAS-DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG 250 (542)
Q Consensus 172 L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 250 (542)
...++.++++-+++.-+..|.-||.-- -... +.=+++.|+..|.+.|..+|..-...+..+|..-. ..-++.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FF----Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~se 655 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFF----GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSE 655 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHh----hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHH
Confidence 566777777788887777777766511 1111 12246899999999999999887777776654321 111345
Q ss_pred chHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 251 ATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 251 ~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
.++| |..-|.+..+.|...|+++|.-|+...--....+ ...++....+|-+++..+|..++..|..+..
T Consensus 656 yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 656 YLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 7788 8888999999999999999999987543222222 2355666778889999999999998887754
No 114
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.11 E-value=6.7e-06 Score=52.44 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=38.1
Q ss_pred CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594 198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 238 (542)
+++.+..+++.|++|.|++++++.++++++.++|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999974
No 115
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.0027 Score=66.56 Aligned_cols=167 Identities=20% Similarity=0.222 Sum_probs=130.0
Q ss_pred hcCCCHHHHHHHHH-HHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594 134 LHDFDPDTRANAAL-ALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212 (542)
Q Consensus 134 L~~~~~~~~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~ 212 (542)
+.+.++..|..|++ +++.+..+++ .. -..+.+++.+.+.+.++++..-.-|.+.+...|+.....+ .
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLav-----N 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAV-----N 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHH-----H
Confidence 66666666666654 5666665444 21 2266778888888999999999999999998886554443 7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA 291 (542)
Q Consensus 213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 291 (542)
.+.+=++++++.+|..|+++++.+=. ++... .+++ +..++.++++.||+.|+-|+.++-+-+++... +.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~---~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH---EL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh---cc
Confidence 78888899999999999999987622 22222 5667 99999999999999999999999977776543 46
Q ss_pred CCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594 292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 322 (542)
|.+..+..++.+.+|.+..+|+.++..+-..
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7888899999999999999999999887544
No 116
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.04 E-value=0.0017 Score=59.75 Aligned_cols=265 Identities=16% Similarity=0.069 Sum_probs=163.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAES 204 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~~ 204 (542)
+.|-++++.-++..|..|+.++.++.. .++.|..+... .+-..++..++.. ...+|.+.+.++.-++. ++...+.
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence 344455556677788899999999987 44555555443 4456677777764 47899999999999888 6666633
Q ss_pred hhh-CCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCh--hhHHHHHhhchHHHHHhh-cCC--ChhHHHHHHHHHHHH
Q psy12594 205 ASD-CDVIPLLIKALNND-EVNVKADAFLCLADIAKDSP--SLASTIADGATTLAVEHL-TYP--HGLVQKNAATLLRDM 277 (542)
Q Consensus 205 ~~~-~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~L~~lL-~~~--~~~v~~~a~~~L~~L 277 (542)
+-. -..+.-++++.+.. ...+.+.++..+.|++...+ ..........+.+-+..| ... |++++...-..=..|
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l 309 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRL 309 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 221 23455666666644 56788999999999998543 233344445566644444 333 777766544433333
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh--hCchHHHHHhhcCCChhhHHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE--LQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
........- .+ ..+..|-.-+-+-+|..+....|. .....+.+ ..++..|..+++...+......|
T Consensus 310 ~~~~k~l~~--fD-~Y~~ELdsg~l~wSp~H~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vA 377 (432)
T COG5231 310 VQNTKKLCI--FD-NYLNELDSGRLEWSPYHHKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVA 377 (432)
T ss_pred HhhhhhhhH--HH-HHHHHHhhCcccCCCcccccCchh---------hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeee
Confidence 322211110 00 001111111111222222222210 11222222 24778889999886554455678
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 356 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
|.-++.+....|+....+.+.|+-..+++++.+++ ++||.+|..|+..++.
T Consensus 378 c~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d--~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 378 CSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDD--DDVKFEALQALQTCIS 428 (432)
T ss_pred HhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCC--chhhHHHHHHHHHHHh
Confidence 99999999999999888889999999999999884 5999999999877653
No 117
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.02 E-value=1.4e-05 Score=61.16 Aligned_cols=86 Identities=24% Similarity=0.378 Sum_probs=71.4
Q ss_pred hHHHHhhh-cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 43 VDLIVPLL-ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 43 i~~L~~lL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
||.|++.+ +++++.+|..|+.+|+.+. ....++.|+++++++++.+|..++.+|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 57888888 8889999999999999776 33468999999999999999999999998742
Q ss_pred hhcCChHHHHhhhcCCC-HHHHHHHHHHHH
Q psy12594 122 IEDKDLDSIISSLHDFD-PDTRANAALALG 150 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~ 150 (542)
..+++.|.+++.+++ ..+|..|+.+|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 247899999998764 667898888774
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.98 E-value=0.00011 Score=67.74 Aligned_cols=189 Identities=22% Similarity=0.236 Sum_probs=118.4
Q ss_pred ccCCHHHHHHHHHHHHHHhcCC--hhhhh-Hhh--cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy12594 94 TKQNKHYKKTALHMLTCVAQQD--ERCAG-LIE--DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGA 168 (542)
Q Consensus 94 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~-~~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~ 168 (542)
.+.+...|..++.-|..+..+. ..... +.. ...+..+...+.+....+...|+.++..++..-....+.. -..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 4577899999999999987655 22222 221 1566777778877778888999999998884322222222 2235
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA 248 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 248 (542)
+|.|++.+.++...++..|..+|..++...+ ....+. .+.+...+.+.++.+|..++..+..+....+.....+.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 8999999999999999999999999998644 111110 36677778889999999999999998776541111111
Q ss_pred ----hhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594 249 ----DGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV 288 (542)
Q Consensus 249 ----~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 288 (542)
-..+.+ +..++.+.++++|..|-.++..+..+.++....+
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 135777 8999999999999999999999987777666544
No 119
>KOG0567|consensus
Probab=97.98 E-value=0.00068 Score=60.71 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=60.4
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchh
Q psy12594 336 VGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKE 415 (542)
Q Consensus 336 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~ 415 (542)
+..|.+-+..+ ..-.|..+++++|.+ .++. .++.|...|.+...++-||.+|+.||+.+... +.++.
T Consensus 189 I~al~~~l~~~-SalfrhEvAfVfGQl--~s~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-~~~~v 255 (289)
T KOG0567|consen 189 INALIDGLADD-SALFRHEVAFVFGQL--QSPA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE-DCVEV 255 (289)
T ss_pred HHHHHHhcccc-hHHHHHHHHHHHhhc--cchh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-HHHHH
Confidence 34445555554 357899999999999 3343 56888888887776778999999999988643 44777
Q ss_pred hHHhhcCCCCHHHHHHHHHHHH
Q psy12594 416 LEQMLLGNVSEELLASILCAFA 437 (542)
Q Consensus 416 L~~lL~~~~~~~v~~~~l~~l~ 437 (542)
|...+. +.++-|...+--+|.
T Consensus 256 L~e~~~-D~~~vv~esc~vald 276 (289)
T KOG0567|consen 256 LKEYLG-DEERVVRESCEVALD 276 (289)
T ss_pred HHHHcC-CcHHHHHHHHHHHHH
Confidence 777776 444444444444443
No 120
>KOG4535|consensus
Probab=97.98 E-value=0.003 Score=61.33 Aligned_cols=434 Identities=10% Similarity=0.073 Sum_probs=224.1
Q ss_pred cCCChHHHHHHHHHHHHhHccCChHHHHH------HH---hcCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 51 ADKVPSIQHAALATLGKLMCAKHVDIRQE------VL---ERNLVALVLKD-LTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~------i~---~~~~l~~Lv~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
++....+|..|+.++..+. +.-+-+.. ++ ..++-|.|+-+ |++.++..|..|+.++..+..++.....
T Consensus 6 r~~~akvr~~al~~~~~~~--~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls 83 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTI--KSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS 83 (728)
T ss_pred hhHHHHHHhhHHHHHHHHH--hhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 3445678888888888777 43111111 11 34566666544 7788999999999998888766543322
Q ss_pred -Hhh---cCCh--------------HHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHH-HcCChHHHHHhccCCC
Q psy12594 121 -LIE---DKDL--------------DSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIV-QCGALPPLVQILASPQ 180 (542)
Q Consensus 121 -~~~---~g~v--------------~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~ 180 (542)
-.+ +..- ..|+-.|. ...+.+....++||+++....|..+-.+. -..++..+-.++++.+
T Consensus 84 ~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d 163 (728)
T KOG4535|consen 84 VAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD 163 (728)
T ss_pred HHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 111 1211 22233333 34567778899999999986665443331 1234556667788889
Q ss_pred HhHHHHHHHHHHHHhcCC---HHHHHHhhhC-----------CCh---------HHHHHh--------------------
Q psy12594 181 LSLKHAAAFALDGIVKHS---PELAESASDC-----------DVI---------PLLIKA-------------------- 217 (542)
Q Consensus 181 ~~~~~~a~~~L~nl~~~~---~~~~~~~~~~-----------~~i---------~~L~~l-------------------- 217 (542)
+.++..++..++.|.... |+....+-.. ..- +.+.+.
T Consensus 164 ~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~ 243 (728)
T KOG4535|consen 164 VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCIS 243 (728)
T ss_pred CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeee
Confidence 999999998888876532 2222111000 000 000000
Q ss_pred ------------------hcC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 218 ------------------LNN--DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 218 ------------------l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
+.. ....+|-.+...|.-++.+-.-.+ .....+.. +...+...++.++..+..++..
T Consensus 244 i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~--~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~ 321 (728)
T KOG4535|consen 244 IVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQ--AYLMELGRVICKCMGEADPSIQLHGAKLLEE 321 (728)
T ss_pred eeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHccCCCCChHHHHHHHHHHHH
Confidence 000 012355555555655554422111 11112333 4444555688999999888887
Q ss_pred Hhc-----CChHHHHHHHhcCCHHHHHH------h-hhcCCccchHHHHHHHhHhhcCCh------HHHHHHHhhCchHH
Q psy12594 277 MCK-----HNLRLANLVVLAGGLDGLLR------L-IDCNGGYNSLPAIMALGYMSAQSE------QIAEQIIELQGVGS 338 (542)
Q Consensus 277 L~~-----~~~~~~~~~~~~~~i~~Lv~------l-L~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~l~~ 338 (542)
+.. ..|+-.+.-...+.+-.+.. . -.+..+..+..++-++.++....- ..+.. +.
T Consensus 322 lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~-------~~ 394 (728)
T KOG4535|consen 322 LGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLC-------IT 394 (728)
T ss_pred HHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhh-------HH
Confidence 642 22332222222222221111 1 122334466677777777754211 11111 11
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC--------
Q psy12594 339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------- 410 (542)
Q Consensus 339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------- 410 (542)
+..-..++.+.-++.+|.++++=+..+..-......-.+....+...+.+. ...+|.+++|+++|+....
T Consensus 395 Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~--~ln~r~KaawtlgnITdAL~~~~Ps~~ 472 (728)
T KOG4535|consen 395 FLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK--SLNVRAKAAWSLGNITDALIVNMPTPD 472 (728)
T ss_pred HHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH--hHhHHHHHHHHhhhhHHHHHcCCCCch
Confidence 111111223345777888888877666544444444455666666777665 4689999999999995321
Q ss_pred ----CC----chhhHHhhcC-CCCH-HHHHHHHHHHHhhCCCChhhh----hHHHHhcchHHhhhcC--CCCcHH-HHHH
Q psy12594 411 ----EN----PKELEQMLLG-NVSE-ELLASILCAFAKILPCDPVAR----RSFVTSHCLRKVQEIE--PTPEIA-PHLK 473 (542)
Q Consensus 411 ----~~----i~~L~~lL~~-~~~~-~v~~~~l~~l~~ll~~~~~~~----~~~~~~g~~~~l~~l~--~~~~~~-~a~~ 473 (542)
.+ +..+.++-.. +.|. +|...+..+|.|+++.-.... ..+.+...++.+.... .+-.++ .+..
T Consensus 473 s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 473 SFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACY 552 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHH
Confidence 11 1122221111 2333 577778888877755322111 1111211111122222 333443 6889
Q ss_pred HHhccCccchhcccCccchHHHHH
Q psy12594 474 TINACFPNEVIHFVSPHYLEDLIN 497 (542)
Q Consensus 474 ~l~~~~~~~~~~~~~~~~~~~~l~ 497 (542)
.|.++|.++-...-.......++.
T Consensus 553 a~gNLfkn~a~~lq~~~wA~~~F~ 576 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQTAPWASQAFN 576 (728)
T ss_pred HHHHhhcCccccccCCCchHHHHH
Confidence 999999877664443333444333
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.96 E-value=2.5e-05 Score=59.79 Aligned_cols=85 Identities=28% Similarity=0.388 Sum_probs=68.7
Q ss_pred hHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594 169 LPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI 247 (542)
Q Consensus 169 i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 247 (542)
|+.|++.+ +++++.+|..++++|+++.. ...++.|..+++++++.+|..++++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 78889999999999996643 234799999999999999999999999873
Q ss_pred HhhchHH-HHHhhcCC-ChhHHHHHHHHHH
Q psy12594 248 ADGATTL-AVEHLTYP-HGLVQKNAATLLR 275 (542)
Q Consensus 248 ~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~ 275 (542)
....++ |..++.++ +..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 125678 99989887 5667888888774
No 122
>KOG1240|consensus
Probab=97.94 E-value=0.00049 Score=73.68 Aligned_cols=297 Identities=15% Similarity=0.064 Sum_probs=178.5
Q ss_pred HHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc---CChHHHH
Q psy12594 86 VALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK---DNKHFAE 161 (542)
Q Consensus 86 l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~---~~~~~~~ 161 (542)
++.+..++++ ...+.+..|+..|..++....+-.+ -.-++|.++.+++++...||..|+.+|..+.. +-+..-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~--LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK--LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH--HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 3444455554 4567888899999888754322111 12478999999999999999999999888762 2222122
Q ss_pred HHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594 162 RIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
.+...=++|.|-.++.+ ....+|..-+.+|..|+.. ...+.+.+.-.....++.+++.+ .....- .+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t----A~rFle~~q~~~~~g~~n~~nse-------t~~~~~-~~ 569 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT----AYRFLELTQELRQAGMLNDPNSE-------TAPEQN-YN 569 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH----HHHHHHHHHHHHhcccccCcccc-------cccccc-cc
Confidence 23333457888888888 4567777777788888762 11221111111112223333332 000000 00
Q ss_pred hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594 241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM 319 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 319 (542)
.+..+ ....+-. ...+|.++++-|++.....+.-||.---.. =.+.-.++.|+.+|++.++.+|.+=...|..+
T Consensus 570 ~~~~~--L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gv 644 (1431)
T KOG1240|consen 570 TELQA--LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGV 644 (1431)
T ss_pred hHHHH--HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccce
Confidence 11111 1123444 677888888899998888888887421000 00123578999999999888776655555544
Q ss_pred hcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHH
Q psy12594 320 SAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKC 399 (542)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a 399 (542)
+..-.. .-.+...+|.|.+-|.++. +.|...|+.++..|+...--.+..+.+ +++...-+|-++ +.=+|..+
T Consensus 645 si~VG~---rs~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hP--N~WIR~~~ 716 (1431)
T KOG1240|consen 645 SIFVGW---RSVSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHP--NLWIRRAV 716 (1431)
T ss_pred EEEEee---eeHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCc--hHHHHHHH
Confidence 332111 1123467888888888854 588889999999887654322333322 556666777777 45799999
Q ss_pred HHHHHHHHhh
Q psy12594 400 KNALNILIPK 409 (542)
Q Consensus 400 ~~aL~nl~~~ 409 (542)
+..|....++
T Consensus 717 ~~iI~~~~~~ 726 (1431)
T KOG1240|consen 717 LGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHhh
Confidence 8888877543
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0037 Score=62.04 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC----HHHHHHHHHHHHHHhcCChhhhhHhhcCChHHH
Q psy12594 55 PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN----KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI 130 (542)
Q Consensus 55 ~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~L 130 (542)
+.-|-.|+..|..+- .++.. ....+++.+.... ......-.++...+...++.... ...|.|
T Consensus 204 ~isqYHalGlLyq~k--r~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~----q~rpfL 269 (898)
T COG5240 204 PISQYHALGLLYQSK--RTDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALL----QLRPFL 269 (898)
T ss_pred hHHHHHHHHHHHHHh--cccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHH----HHHHHH
Confidence 455666777776666 33222 2223444444322 22222233334444433333322 234666
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200 (542)
Q Consensus 131 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~ 200 (542)
-..+++.-..+..++++++..++..+ ....+++. .+..|-.+|+++....|-.|+++|..|+...|+
T Consensus 270 ~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 270 NSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 66776666788888888888887543 11222222 267778888888899999999999999875553
No 124
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.92 E-value=6.1e-05 Score=69.46 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=119.1
Q ss_pred cCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHc--CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCC
Q psy12594 135 HDFDPDTRANAALALGGLAKDN--KHFAERIVQC--GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDV 210 (542)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 210 (542)
.+.+.+.|..++..|..+...+ ......+.+. .++..+...+.+....+...|+.++..++........... ...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence 4567888999999999988655 2223333222 5566777778777788999999999999875433333333 456
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhch-HH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGAT-TL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV 288 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 288 (542)
+|.|++.+.++...++..|..+|..++...+ ... .+ .+ +...+.+.++.+|..++..+..+....+.....+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-YSP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS--H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 7999999999999999999999999998764 111 23 55 7777888899999999999998876555111111
Q ss_pred H----hcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHH
Q psy12594 289 V----LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAE 328 (542)
Q Consensus 289 ~----~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 328 (542)
. -....+.+..++.+.++++|..|-.++..+....++...
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 1 134677889999999999999999999988655444443
No 125
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.84 E-value=0.0015 Score=60.01 Aligned_cols=287 Identities=12% Similarity=0.060 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCch---HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHH-HhcCcHHHHHH
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVV---DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEV-LERNLVALVLK 91 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i---~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i-~~~~~l~~Lv~ 91 (542)
.|..|...+..+..+.. ..++.|.. ..|-+++++-++-.+.-|+.++.++. ..++.+... .+...-..++.
T Consensus 124 ~k~~f~~vf~~~~~~~~---~~v~~~~~LfleyLgkl~Q~i~~lTrlfav~cl~~l~--~~~e~R~i~waentcs~r~~e 198 (432)
T COG5231 124 HKKEFLSVFKQMLKDNT---SYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLE--FDVEKRKIEWAENTCSRRFME 198 (432)
T ss_pred HHHHHHHHHHHHccCch---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHhhHHHHHHH
Confidence 45566776666665321 22233322 33445666667888999999999999 776666544 34456677888
Q ss_pred hhcc--CCHHHHHHHHHHHHHHhcCChhhhh-Hhh-cCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCC-hHHHHHHHH
Q psy12594 92 DLTK--QNKHYKKTALHMLTCVAQQDERCAG-LIE-DKDLDSIISSLHDFD-PDTRANAALALGGLAKDN-KHFAERIVQ 165 (542)
Q Consensus 92 ~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~-~~~-~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~-~~~~~~i~~ 165 (542)
.++. ...++|...+.++.-+.... ...+ +-+ ...+.-++++.+... ..+-..++..+.|++... ......+.-
T Consensus 199 ~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll 277 (432)
T COG5231 199 ILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL 277 (432)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh
Confidence 8875 55788999998888877443 3333 221 245666777776543 566677888888888633 233444444
Q ss_pred cCChHHHHHhccCC---CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594 166 CGALPPLVQILASP---QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 166 ~g~i~~L~~ll~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
.|-+..-++.|... +.+++...-.+=..+.....+... .+.-.-+.-..++. .+|.-+..-.|. .
T Consensus 278 l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~--fD~Y~~ELdsg~l~-wSp~H~~~dFWs---------~ 345 (432)
T COG5231 278 LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI--FDNYLNELDSGRLE-WSPYHHKKDFWS---------T 345 (432)
T ss_pred hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHhhCccc-CCCcccccCchh---------h
Confidence 44455555655442 455555433332222221111110 00000011111111 122222222221 1
Q ss_pred hHHHHHh--hchHH-HHHhhcCCChh-HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594 243 LASTIAD--GATTL-AVEHLTYPHGL-VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318 (542)
Q Consensus 243 ~~~~~~~--~~~i~-L~~lL~~~~~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 318 (542)
+.+.+.+ ..++. |.++++...+. ....||.-+..+.+..|+....+.++|+=+.+..++.+++++++..|+.++..
T Consensus 346 N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~ 425 (432)
T COG5231 346 NLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQT 425 (432)
T ss_pred hHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHH
Confidence 2222222 46778 99999988554 66678888999999999999989999999999999999999999999988876
Q ss_pred hh
Q psy12594 319 MS 320 (542)
Q Consensus 319 l~ 320 (542)
+.
T Consensus 426 ~i 427 (432)
T COG5231 426 CI 427 (432)
T ss_pred HH
Confidence 54
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.043 Score=54.81 Aligned_cols=209 Identities=15% Similarity=0.133 Sum_probs=125.7
Q ss_pred HHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHH
Q psy12594 189 FALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQ 267 (542)
Q Consensus 189 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~ 267 (542)
++...+...+++...++. |.|-.++++.-.-+.-.+++++..++..+ .....+. ..+. |-.+|+++....|
T Consensus 249 r~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 249 RATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHH
Confidence 334444445565555554 77888888776778888888888887654 1222222 4566 8888999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC
Q psy12594 268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH 347 (542)
Q Consensus 268 ~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 347 (542)
..|..+|..|+...|+... -+=+.+-.++.+.+..+...|+..|. -.++++....+++ .++.++.=+.++-
T Consensus 321 FsA~Riln~lam~~P~kv~-----vcN~evEsLIsd~Nr~IstyAITtLL--KTGt~e~idrLv~--~I~sfvhD~SD~F 391 (898)
T COG5240 321 FSAMRILNQLAMKYPQKVS-----VCNKEVESLISDENRTISTYAITTLL--KTGTEETIDRLVN--LIPSFVHDMSDGF 391 (898)
T ss_pred HHHHHHHHHHHhhCCceee-----ecChhHHHHhhcccccchHHHHHHHH--HcCchhhHHHHHH--HHHHHHHhhccCc
Confidence 9999999999987765432 11133456667777777777777663 3566665555543 2333333232221
Q ss_pred hhhHHHHHHHHHHHhhcCChHHHHH--------HHHcCC-------hHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy12594 348 KEQLQVAAAWTLGQIGKHSVDNVTA--------LCEENV-------LSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN 412 (542)
Q Consensus 348 ~~~v~~~a~~~L~~l~~~~~~~~~~--------l~~~~~-------l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~ 412 (542)
.-+...|.+.|++. .|.-... +.+.|+ +..+.+.+.. .++-|+.|...||.++++|++
T Consensus 392 -KiI~ida~rsLsl~---Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---~p~skEraLe~LC~fIEDcey 464 (898)
T COG5240 392 -KIIAIDALRSLSLL---FPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---DPDSKERALEVLCTFIEDCEY 464 (898)
T ss_pred -eEEeHHHHHHHHhh---CcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHhhcch
Confidence 13444455555544 3322221 223333 3444555543 247777788888888888877
Q ss_pred chhhHHhhc
Q psy12594 413 PKELEQMLL 421 (542)
Q Consensus 413 i~~L~~lL~ 421 (542)
-+..+++|.
T Consensus 465 ~~I~vrIL~ 473 (898)
T COG5240 465 HQITVRILG 473 (898)
T ss_pred hHHHHHHHH
Confidence 766666654
No 127
>KOG1058|consensus
Probab=97.81 E-value=0.004 Score=63.73 Aligned_cols=323 Identities=12% Similarity=0.083 Sum_probs=167.6
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCC-------hhh
Q psy12594 46 IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD-------ERC 118 (542)
Q Consensus 46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~-------~~~ 118 (542)
+.+=|+++++-+|...++.|++|- + ++.. ...+|.+.++|.+.++-+|+.|..++..+-... ++.
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLk--E-~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeL 175 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLK--E-PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPEL 175 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcC--c-HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHH
Confidence 445567888888988888888875 3 3332 236788888999999999998888777654331 111
Q ss_pred hh-Hhh--cC--C-hHHHHhhh------------------cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q psy12594 119 AG-LIE--DK--D-LDSIISSL------------------HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ 174 (542)
Q Consensus 119 ~~-~~~--~g--~-v~~Lv~lL------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ 174 (542)
.. +.. .+ . -..++-++ .+.++.++...+..+...+..+|..+.. .+..+..
T Consensus 176 i~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~ 250 (948)
T KOG1058|consen 176 IESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYN 250 (948)
T ss_pred HHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHH
Confidence 11 110 00 0 00111111 1112223333333333333323332222 2455666
Q ss_pred hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchH
Q psy12594 175 ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATT 253 (542)
Q Consensus 175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 253 (542)
+|.+.++.++..|+.+|.+++. +|....... ..++.++. .++..+.--...-|..+...+ +.+.+ +.+
T Consensus 251 lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa-----~~~i~l~~kesdnnvklIvldrl~~l~~~~----~~il~-~l~ 319 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLVTLSN-DPTALKAAA-----STYIDLLVKESDNNVKLIVLDRLSELKALH----EKILQ-GLI 319 (948)
T ss_pred HHhcCCchhhhhhcceEEEccC-CHHHHHHHH-----HHHHHHHHhccCcchhhhhHHHHHHHhhhh----HHHHH-HHH
Confidence 7777777777777777777766 443333222 34444443 223333333333344443221 12222 444
Q ss_pred H-HHHhhcCCChhHHHHHHHHHHHHhcCC--hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594 254 L-AVEHLTYPHGLVQKNAATLLRDMCKHN--LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI 330 (542)
Q Consensus 254 ~-L~~lL~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 330 (542)
- ++..|..+|-+++..++.....|+.+. .+... +....+...--. =+..+.+.|..-+++++..+..-++...
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~-~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~aa-- 395 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQ-FLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEVAA-- 395 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHH-HHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHHHH--
Confidence 4 889999999999999999888886432 12211 111010000000 0111223466667788777666555443
Q ss_pred HhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594 331 IELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL 406 (542)
Q Consensus 331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl 406 (542)
.+++.|++.+.+.++ ..-...+..+.......|..+..++ ..|+..+..-. +..+.+.|.|.++..
T Consensus 396 ---tvV~~ll~fisD~N~-~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~ir-S~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 396 ---TVVSLLLDFISDSNE-AAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQIR-SSKICRGALWILGEY 461 (948)
T ss_pred ---HHHHHHHHHhccCCH-HHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhhhc-ccccchhHHHHHHHH
Confidence 577888999988553 4444444444444445555444443 33333333211 225677778877765
No 128
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.79 E-value=0.0036 Score=63.40 Aligned_cols=261 Identities=13% Similarity=0.059 Sum_probs=167.0
Q ss_pred HHHHHHhHccCChHHHHHHHhcCcHHHHHHhh----------ccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHH
Q psy12594 62 LATLGKLMCAKHVDIRQEVLERNLVALVLKDL----------TKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSI 130 (542)
Q Consensus 62 ~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L----------~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~L 130 (542)
+.+|+-++ .++...+.+....++..|.+.- ...++.+..+|+.+|+|+...++..+. +.+.|..+.+
T Consensus 2 L~~LRiLs--Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILS--RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHc--cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 34455555 5544555555555555555544 246789999999999999999989888 8899999999
Q ss_pred HhhhcCC-----CHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccC-----------------CCHhHHHHH
Q psy12594 131 ISSLHDF-----DPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILAS-----------------PQLSLKHAA 187 (542)
Q Consensus 131 v~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~-----------------~~~~~~~~a 187 (542)
++.|+.. +.++.....+.|.-++...+..+..+++. +++..++..+.. .+......+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999876 67888888888888877777777777666 667766665521 124456678
Q ss_pred HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChhh-----------HHHH
Q psy12594 188 AFALDGIVKHSPELAESASDCDVIPLLIKALN---------NDEVNVKADAFLCLADIAKDSPSL-----------ASTI 247 (542)
Q Consensus 188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~-----------~~~~ 247 (542)
+..+-|+..+.+..... .+...++.++.++. .+......+++.+|.|+--..... ....
T Consensus 160 LKllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 160 LKLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence 88889998765543321 11233343333322 123457788888888873211111 0001
Q ss_pred HhhchHH-HHHhhcCC--------ChhHHHHHHHHHHHHhcCChHHHHHHHh----------------cCCHHHHHHhhh
Q psy12594 248 ADGATTL-AVEHLTYP--------HGLVQKNAATLLRDMCKHNLRLANLVVL----------------AGGLDGLLRLID 302 (542)
Q Consensus 248 ~~~~~i~-L~~lL~~~--------~~~v~~~a~~~L~~L~~~~~~~~~~~~~----------------~~~i~~Lv~lL~ 302 (542)
.....+. |+.+|... -.+.....+.+|..++.......+.+.. ...-.+|++++.
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 1233445 66665432 1356667778888888776544443332 123457888888
Q ss_pred cCCccchHHHHHHHhHhhcCChH
Q psy12594 303 CNGGYNSLPAIMALGYMSAQSEQ 325 (542)
Q Consensus 303 ~~~~~~~~~a~~~L~~l~~~~~~ 325 (542)
++.+.++..+...+..||..+..
T Consensus 319 ~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred CCCchHHHHHHHHHHHHHhhhHH
Confidence 88877888888888888765543
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.77 E-value=5.8e-05 Score=51.76 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594 349 EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL 406 (542)
Q Consensus 349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl 406 (542)
+.+|..|+++|++++...++..+. ....+++.|+.+|.++ +++||..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 368999999999998777776665 4446999999999876 469999999999986
No 130
>KOG1078|consensus
Probab=97.75 E-value=0.028 Score=58.19 Aligned_cols=69 Identities=25% Similarity=0.251 Sum_probs=49.9
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
..+.+-.++.+....+...|+.++.++...++.. +. ..+..|--++.++...+|..|.++|..++...|
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 4556666777777888888888888887544331 11 146777778888889999999999988887444
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.74 E-value=4.9e-05 Score=52.13 Aligned_cols=55 Identities=31% Similarity=0.487 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADI 236 (542)
Q Consensus 181 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 236 (542)
+.+|..|+++|++++...++...... ..+++.|..++.++++++|..|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999987776666644 77889999999999999999999999875
No 132
>PRK14707 hypothetical protein; Provisional
Probab=97.67 E-value=0.2 Score=57.83 Aligned_cols=422 Identities=16% Similarity=0.111 Sum_probs=221.1
Q ss_pred HHHHHHhcCCCCchHHHHhCCchHHHHhhhcC--CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CC
Q psy12594 21 VQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD--KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QN 97 (542)
Q Consensus 21 ~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~ 97 (542)
......++.+...+..+ +..+|..+++-+.. +++..+..+...-..++ .++..+..+ +...+-..+..|+. ++
T Consensus 186 ~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~--~~~~l~~~~-~~q~va~~lN~lsKwp~ 261 (2710)
T PRK14707 186 PRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLA--DESRLRNEL-KPQELGNALNALSKWAD 261 (2710)
T ss_pred HHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHc--CcHHHHHhC-ChHHHHHHHHHHhcCCC
Confidence 33334444444444333 34444544544432 33444444444444444 334443333 34445555665654 45
Q ss_pred HHHHHHHHHHHHH-HhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594 98 KHYKKTALHMLTC-VAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI 175 (542)
Q Consensus 98 ~~~~~~a~~~L~~-l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 175 (542)
...-..++..+.. ++. .+..++ +-..++-..|-.+-+-++..+...|+..|..=..++++.++.+-..++-..|-.+
T Consensus 262 ~~~C~~a~~~lA~rl~~-~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNal 340 (2710)
T PRK14707 262 TPVCAAAASALAERLVD-DPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNAL 340 (2710)
T ss_pred chHHHHHHHHHHHHHhh-hHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHh
Confidence 4455555555444 543 334444 3322232333333344566677777766665555577776666555533333333
Q ss_pred ccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchH
Q psy12594 176 LASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATT 253 (542)
Q Consensus 176 l~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 253 (542)
-+=++ ...+..+...-..++. +++.+..+-. .++...++-++ =++....+.++..|..=..++++.++.+...++-
T Consensus 341 sKWpd~~~C~~Aa~~LA~rl~~-d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~va 418 (2710)
T PRK14707 341 SKWPDNPVCAAAVSALAERLVA-DPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVS 418 (2710)
T ss_pred hcCCCchhHHHHHHHHHHHhcc-CHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHH
Confidence 34355 4455555544555555 6777766653 34444444444 3455555555555554444556677777766666
Q ss_pred HHHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594 254 LAVEHLTY-PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMSAQSEQIAEQII 331 (542)
Q Consensus 254 ~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 331 (542)
.+++-|+. ++..+...++..|..-..++++..+.+--.+ +...+..++ =++..+-..+...|..-...+.+..+.+-
T Consensus 419 n~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~ 497 (2710)
T PRK14707 419 NALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERRLRKALK 497 (2710)
T ss_pred HHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcC
Confidence 65555554 5888888888888877777777766543223 333343333 35555666666666555455566666554
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC- 410 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~- 410 (542)
-.++...|-.+-+-+......+.+.|..+.+.. +......+...-+..+++-+... +..+.++.++..|..+....
T Consensus 498 ~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKw-p~s~~C~~A~~~iA~~l~~~~ 574 (2710)
T PRK14707 498 PQEVVIALHSLSKWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKW-PDKQLCAVAASGLAERLADEP 574 (2710)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcC-CchhHHHHHHHHHHHHhhcch
Confidence 445555555555554446677778888888842 22233333322334444444432 24467777777777664321
Q ss_pred --------CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHh
Q psy12594 411 --------ENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTS 453 (542)
Q Consensus 411 --------~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~ 453 (542)
..+..+...|+.-.+......+...|...+...+..+..+...
T Consensus 575 ~~~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q 625 (2710)
T PRK14707 575 QLPKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELDPV 625 (2710)
T ss_pred hhHHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhccHH
Confidence 1134444444323344556666666665555555444444333
No 133
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.63 E-value=0.084 Score=53.34 Aligned_cols=341 Identities=13% Similarity=0.099 Sum_probs=190.0
Q ss_pred hHHHHhhhcCCCh---HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhh
Q psy12594 43 VDLIVPLLADKVP---SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 43 i~~L~~lL~s~~~---~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
+|.+...|.++++ ......+.+|..++ ..+...+.+.. ..+..+-..... .+.......+..+.++.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls--~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALS--TSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHH--CChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3667777766654 56777889999999 76555444333 334344333332 35667777777887775433222
Q ss_pred h-----h-HhhcCChHHHHhhhcCC-------CHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhcc-------
Q psy12594 119 A-----G-LIEDKDLDSIISSLHDF-------DPDTRANAALALGGLAKDN-KHFAERIVQCGALPPLVQILA------- 177 (542)
Q Consensus 119 ~-----~-~~~~g~v~~Lv~lL~~~-------~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~------- 177 (542)
. . ..+..+++.+.++.-.. ++.+...+...+..+...- ++.++.+ +..+..++.
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~ 152 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP 152 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence 2 1 33445788877776321 2455555666666555433 3333333 223333332
Q ss_pred ---CC------CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594 178 ---SP------QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTI 247 (542)
Q Consensus 178 ---~~------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 247 (542)
.. ..........+++.+-.. ..-. .....+..++.+.. ..++..+..++.+++-+...-++..
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~---~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--- 225 (415)
T PF12460_consen 153 FQPSSSTISEQQSRLVILFSAILCSLRKD---VSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--- 225 (415)
T ss_pred CCccccccccccccHHHHHHHHHHcCCcc---cCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---
Confidence 01 111222222333333321 1100 11124556666655 4468889999999998887632111
Q ss_pred HhhchHH-HHHhh-cCCChhHHH----HHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 248 ADGATTL-AVEHL-TYPHGLVQK----NAATLLRDMCKH-NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 248 ~~~~~i~-L~~lL-~~~~~~v~~----~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
.-..++. +...+ ...+...+. ..+|+...+... ++... ..++.|++++.+ +.+...+.+.++-+.
T Consensus 226 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 226 DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PELGQQAAKAFGILL 297 (415)
T ss_pred hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hhhHHHHHHHHhhHh
Confidence 1113344 44444 222334444 444554444332 33222 235577888877 567788888888887
Q ss_pred cCChH--------HHHHHHhh----CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhc
Q psy12594 321 AQSEQ--------IAEQIIEL----QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQ 388 (542)
Q Consensus 321 ~~~~~--------~~~~~~~~----~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~ 388 (542)
...+. ..+.+.+. ..+|.|++-.+...+ ..+..-+.+|.++..+-|.....--=..++|.|++-|..
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 65232 22333333 467777777776543 588888999999988776433222224688999999977
Q ss_pred CCCChHHHHHHHHHHHHHHhh
Q psy12594 389 TCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 389 ~~~~~~v~~~a~~aL~nl~~~ 409 (542)
+ +.+++..+..+|..++..
T Consensus 377 ~--~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 377 P--DADVLLSSLETLKMILEE 395 (415)
T ss_pred C--CHHHHHHHHHHHHHHHHc
Confidence 6 457888888888887754
No 134
>KOG0915|consensus
Probab=97.58 E-value=0.024 Score=62.89 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=105.2
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
..||.|.++-.++++.+|..-..+...|. .+ ....+.+ -..+++.|+.-|.+....+|+.++.+|..+..+.+.-.
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li--~D~k~~vd~y-~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALI--TDSKKVVDEY-LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhc--cChHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence 35677777767888999988888888888 66 3333322 33577788888888889999999999999987753322
Q ss_pred hHhh--cCChHHHHhhhcCCCHHHHHHH---HHHHHHhhc-----CChHHHHHHHHcCChHHHHH--hccCCCHhHHHHH
Q psy12594 120 GLIE--DKDLDSIISSLHDFDPDTRANA---ALALGGLAK-----DNKHFAERIVQCGALPPLVQ--ILASPQLSLKHAA 187 (542)
Q Consensus 120 ~~~~--~g~v~~Lv~lL~~~~~~~~~~a---~~~L~~l~~-----~~~~~~~~i~~~g~i~~L~~--ll~~~~~~~~~~a 187 (542)
. .+ ...+..+.+.+.+-...+|+.| +.+|+.++. .++.-.+.+.+ .++|.|+. .+ +.-+++|+.+
T Consensus 1075 ~-~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~s 1151 (1702)
T KOG0915|consen 1075 V-KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFS 1151 (1702)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHH
Confidence 2 21 1466666777665556777664 445555541 11111112211 12343332 12 3348899999
Q ss_pred HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc
Q psy12594 188 AFALDGIVKHSPELAESASDCDVIPLLIKALN 219 (542)
Q Consensus 188 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~ 219 (542)
+.++..|+.+.+....... ...+|.|+....
T Consensus 1152 i~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHF-PKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHhchhhhcchh-hHHHHHHHHHcc
Confidence 9999999986654332222 344555555554
No 135
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.52 E-value=0.0051 Score=62.55 Aligned_cols=251 Identities=16% Similarity=0.140 Sum_probs=137.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy12594 87 ALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC 166 (542)
Q Consensus 87 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 166 (542)
..++...+ .+...+..|+..+.....+-|+... .++..++.+..++|..+|..|+..|-.+|.++++....+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQE----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHH----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 34444444 5788999999999999888777665 467899999999999999999999999999887766665
Q ss_pred CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---CCCHHHHHHHHHHHHHHhc-CChh
Q psy12594 167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN---NDEVNVKADAFLCLADIAK-DSPS 242 (542)
Q Consensus 167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~-~~~~ 242 (542)
+..|+++|.++++.-...+-.+|..+...++.. .+..+...+. +.+..+|+.++..|..=.. -..+
T Consensus 98 --aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 98 --ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp --HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred --HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 678999999998777777888888888766643 2333333333 4577899998877743322 1111
Q ss_pred hHH--HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc----CChHHHHHHHhcCCHHHHHHhh------hcCCccch
Q psy12594 243 LAS--TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK----HNLRLANLVVLAGGLDGLLRLI------DCNGGYNS 309 (542)
Q Consensus 243 ~~~--~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~----~~~~~~~~~~~~~~i~~Lv~lL------~~~~~~~~ 309 (542)
... .-.+.-++. +-..|.+-..+=......+|..+-. ..+...+.+++ .+.+.. ...++...
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~-----ii~eQa~Ld~~f~~sD~e~I 242 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVD-----IIEEQADLDQPFDPSDPESI 242 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHH-----HHHHHHTTTS---SSSHHHH
T ss_pred HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHH-----HHHHHhccCCCCCCcCHHHH
Confidence 111 223334455 6666765444444455566666654 23444443322 222211 11222221
Q ss_pred HHHH----HHHhHhhc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594 310 LPAI----MALGYMSA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS 366 (542)
Q Consensus 310 ~~a~----~~L~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 366 (542)
..-+ .++-..+. .+......+++ .++|.+-.+ .+..+...+.++..++...
T Consensus 243 drli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l-----~e~~kl~lLk~lAE~s~~~ 299 (556)
T PF05918_consen 243 DRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL-----PEDRKLDLLKLLAELSPFC 299 (556)
T ss_dssp HHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT----------HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC-----ChHHHHHHHHHHHHHcCCC
Confidence 1111 22222222 22233333333 577765555 2356777888888887553
No 136
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.49 E-value=0.14 Score=51.63 Aligned_cols=335 Identities=18% Similarity=0.131 Sum_probs=187.7
Q ss_pred HHHHHHhhccCCH---HHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChH---
Q psy12594 86 VALVLKDLTKQNK---HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKH--- 158 (542)
Q Consensus 86 l~~Lv~~L~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~--- 158 (542)
+|.++..|.+.++ ......+.+|..+|...+-...+.. ..+..+-...+.. +.+.....+.+|..+......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 3567777776443 5677888899999866533333221 3444444444322 456666677777777632222
Q ss_pred --HHHHHHHcCChHHHHHhccCC-------CHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhc---------
Q psy12594 159 --FAERIVQCGALPPLVQILASP-------QLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALN--------- 219 (542)
Q Consensus 159 --~~~~i~~~g~i~~L~~ll~~~-------~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~--------- 219 (542)
......+..+++.+.+..... +..+...+...+..+...- ++....+. ..+..++.
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCC
Confidence 123334445677777766332 1445555555555555533 22333332 22333222
Q ss_pred -C------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHh
Q psy12594 220 -N------DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVL 290 (542)
Q Consensus 220 -~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 290 (542)
. .......-...++..+-.+.. .. .....+. ++.+..+. ++..+..++.+++.+.-.-+.... +
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~-~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~-l-- 227 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVS-LP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD-L-- 227 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccC-cc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh-H--
Confidence 0 111222223333433332221 11 1123667 77776655 688899999999988855222211 1
Q ss_pred cCCHHHHHHhh-hcCCccchHHHHHHHhHhh-----cCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594 291 AGGLDGLLRLI-DCNGGYNSLPAIMALGYMS-----AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK 364 (542)
Q Consensus 291 ~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~-----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 364 (542)
...++.+...+ ...++..+..++..+..++ ++++... ..+..|+.++.+ +.+...++.+++-+..
T Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 228 DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 12333344333 3334445555555444333 2333322 355667888877 3678888888888866
Q ss_pred CChH--------HHHHHHHc----CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC----------CCchhhHHhhcC
Q psy12594 365 HSVD--------NVTALCEE----NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC----------ENPKELEQMLLG 422 (542)
Q Consensus 365 ~~~~--------~~~~l~~~----~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~----------~~i~~L~~lL~~ 422 (542)
..++ ..+.+... ..+|.|++..+..+ .+.|..-..||.+++... ..+|.|.+-|.
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~--~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~- 375 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD--DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLS- 375 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC--hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC-
Confidence 5232 33444443 35677777777653 358888889999997653 23566777777
Q ss_pred CCCHHHHHHHHHHHHhhCCCChh
Q psy12594 423 NVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 423 ~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
..|.+++..++..+..++...++
T Consensus 376 ~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 376 LPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHH
Confidence 78889999999999999887754
No 137
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.45 E-value=0.0011 Score=51.17 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhhh
Q psy12594 141 TRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS--PQLSLKHAAAFALDGIVKHSPELAESASD 207 (542)
Q Consensus 141 ~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~ 207 (542)
.+...+..|++++..++..++.+.+.|++|.++....- .+|-+++.|.+++.||+.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35667889999999999999999999999999987643 46999999999999999999988877653
No 138
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.44 E-value=0.00037 Score=44.29 Aligned_cols=39 Identities=31% Similarity=0.507 Sum_probs=35.6
Q ss_pred HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 158 HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 158 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
+.+..+.+.|+++.|++++++++++++..++|+|+||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467888999999999999999899999999999999973
No 139
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.44 E-value=0.001 Score=51.27 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594 183 LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN--NDEVNVKADAFLCLADIAKDSPSLASTIAD 249 (542)
Q Consensus 183 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 249 (542)
++...+.+|+|++..++.....+.+.+++|.++.... +.+|.+++.|++++.||+..+++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667889999999999999999999999999998876 458999999999999999999888775543
No 140
>KOG1020|consensus
Probab=97.41 E-value=0.35 Score=54.17 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHHH------------HHHHHHHHHHhcC-CCCchH-HHHhCCchHHHHhhhcCCChHHHHHHHHHHHHh
Q psy12594 3 RKSVKNSIDHYQRA------------RLCFVQTMSAFAD-KPSTIH-FLKDLNVVDLIVPLLADKVPSIQHAALATLGKL 68 (542)
Q Consensus 3 ~~~~~~~~~~~~~~------------r~~~~~~l~~l~~-~~~~~~-~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l 68 (542)
.+...|.||.|.+- |..++++|..+.+ +|.... .-+..|+ -.-+.++...||.+|+..+++.
T Consensus 807 ~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V----h~R~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 807 ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV----HGRLNDSSASVREAALDLVGRF 882 (1692)
T ss_pred hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH----HHhhccchhHHHHHHHHHHhhh
Confidence 46788888888763 6778888888877 333221 2223333 2334556789999999999987
Q ss_pred HccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 69 MCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 69 ~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
. -. ++...++ ...+..-..+....||+.++.+++.+|...|+...
T Consensus 883 v--l~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~ 928 (1692)
T KOG1020|consen 883 V--LSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK 928 (1692)
T ss_pred h--hccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh
Confidence 7 43 5554443 33566666778889999999999999987766544
No 141
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.41 E-value=0.02 Score=51.94 Aligned_cols=181 Identities=16% Similarity=0.213 Sum_probs=116.9
Q ss_pred HHH-HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCC-----hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHH
Q psy12594 17 RLC-FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKV-----PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVL 90 (542)
Q Consensus 17 r~~-~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~-----~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv 90 (542)
|.+ ++..+-.++.||+.|..|.++.+.-.|.++|+..+ +..|..++.+++.+.+..+++....+...+.+|..+
T Consensus 66 RVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 66 RVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 444 55666677889999999999999888888886432 468899999999999545588889999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP 170 (542)
Q Consensus 91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 170 (542)
+.+..++.-.|..|.+++.++..++.....+. ..++-......+|.++.
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC--------------~t~eRf~av~~vL~~mV----------------- 194 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYIC--------------QTAERFFAVAMVLNKMV----------------- 194 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHT--------------SSHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHh--------------cCHHHHHHHHHHHHHHH-----------------
Confidence 99999999999999999999876553222211 12222222333333332
Q ss_pred HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc--------CCCHHHHHHHHHHHHHH
Q psy12594 171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN--------NDEVNVKADAFLCLADI 236 (542)
Q Consensus 171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l 236 (542)
..+.+++++.+.....++-..|+. ++..+..+.. .+-..++ ..|+.+++.-...+.|+
T Consensus 195 --~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~-----~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 195 --EQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ-----CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp --HHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH-----HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred --HHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH-----hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 233455677788888888888887 5555555441 1112222 23566666666665554
No 142
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.35 E-value=0.0094 Score=57.40 Aligned_cols=213 Identities=10% Similarity=0.168 Sum_probs=152.1
Q ss_pred HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHh--hchHH-HHHhhcCCChhHHHHHHHHH
Q psy12594 203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL-----ASTIAD--GATTL-AVEHLTYPHGLVQKNAATLL 274 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~--~~~i~-L~~lL~~~~~~v~~~a~~~L 274 (542)
..+...+.+..|+..|..-+-+.|..++..+.++-+..... .+.+.. ..++. |+.... ++++--.+...|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 34445688889999999889999999999999998765332 223322 23333 433333 567777788888
Q ss_pred HHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC---chHHHHHhhcCCChhhH
Q psy12594 275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ---GVGSLQTILQCPHKEQL 351 (542)
Q Consensus 275 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v 351 (542)
+.+.++ +..++.+.....+..+..+...++-++...|..++..+-..++.....++..+ +...+..++.++ +--+
T Consensus 148 Rec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvt 225 (335)
T PF08569_consen 148 RECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVT 225 (335)
T ss_dssp HHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHH
T ss_pred HHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEe
Confidence 888865 55556677788999999999999999999999999998887777776666553 566777888885 4588
Q ss_pred HHHHHHHHHHhhcCChHH---HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594 352 QVAAAWTLGQIGKHSVDN---VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL 421 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~~---~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~ 421 (542)
+..++..|+.+....... .+.+-+...+..++.+|++. +..+|.+|...+.=++.+..--+++..+|.
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~ 296 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVANPNKPPPIVDILI 296 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH-SS-BHHHHHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHhCCCCChHHHHHHH
Confidence 999999999997543322 23333557889999999987 578999999999888887766666666665
No 143
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.34 E-value=0.015 Score=52.88 Aligned_cols=218 Identities=16% Similarity=0.195 Sum_probs=133.8
Q ss_pred ChHHHHHHHHHHHHhHccCC-hHHHHHHHhc-CcHHHHHHh-------hccCC--H---HHHHHHHHHHHHHhcCChhhh
Q psy12594 54 VPSIQHAALATLGKLMCAKH-VDIRQEVLER-NLVALVLKD-------LTKQN--K---HYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 54 ~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~-~~l~~Lv~~-------L~~~~--~---~~~~~a~~~L~~l~~~~~~~~ 119 (542)
+++.|..|+.-|.+-- +. ++....+..+ |.+..|++= ++.++ . .-...++..|..++++.+...
T Consensus 8 ~~~~Re~Al~eLsk~r--~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKR--ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTC--CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHH
T ss_pred CcchHHHHHHHHHHhh--hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 5777888888777766 54 5554444443 555555442 22222 1 223455566666787664444
Q ss_pred hHhhcCChHHHHhhhcCCC-----HHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594 120 GLIEDKDLDSIISSLHDFD-----PDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG 193 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 193 (542)
.+.+....-.|..+|+..+ ..+|..++.+++.+.. ++++....+.+.+++|..++.|+.++.-.+..|..++..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4888888777777776543 5788999999999984 456778888899999999999999988889999999998
Q ss_pred HhcCCHHHHHHhhh--------CCCh-HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--HH----Hh
Q psy12594 194 IVKHSPELAESASD--------CDVI-PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--AV----EH 258 (542)
Q Consensus 194 l~~~~~~~~~~~~~--------~~~i-~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L~----~l 258 (542)
|-.++ ..-..+.. ..++ ..+..+..++++.+..+.+++...|+.+. ..++.+.. .+| |- ..
T Consensus 166 IL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~~--~LP~~Lrd~~f~~ 241 (262)
T PF04078_consen 166 ILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALRQ--CLPDQLRDGTFSN 241 (262)
T ss_dssp HHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHHH--HS-GGGTSSTTTT
T ss_pred HHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHHH--hCcHHHhcHHHHH
Confidence 87743 22222211 1122 22333455789999999999999999885 45554432 222 21 11
Q ss_pred hcCCChhHHHHHHHHHHHH
Q psy12594 259 LTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 259 L~~~~~~v~~~a~~~L~~L 277 (542)
+-.+|+.++..-...+.|+
T Consensus 242 ~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 242 ILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp GGCS-HHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 2223566666655555554
No 144
>KOG4151|consensus
Probab=97.32 E-value=0.0064 Score=63.01 Aligned_cols=226 Identities=15% Similarity=0.070 Sum_probs=156.3
Q ss_pred CChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHH-HhcCChhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHH
Q psy12594 72 KHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTC-VAQQDERCAGLIEDKDLDSIISSLHDFD-PDTRANAALAL 149 (542)
Q Consensus 72 ~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L 149 (542)
....-+...+..|+...|+.+...+.+..+.....+|.. +.-.. + .....++.+...++... ..-...++.++
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~----~~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-E----RSYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-C----chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 345555666788999999999988888888888888872 21111 0 01134555555554332 22335678899
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHhhcCCCHHHHHH
Q psy12594 150 GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD-CDVIPLLIKALNNDEVNVKAD 228 (542)
Q Consensus 150 ~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~ 228 (542)
.|+++.+...++.+.+.-.++.+-.++..+++..|+.++..+.||..+.--....+++ ...++.....+...+......
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 9999888888888888877887777888889999999999999999843333344554 445666666666666777777
Q ss_pred HHHHHHHHhcCChhhHH-HHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh
Q psy12594 229 AFLCLADIAKDSPSLAS-TIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID 302 (542)
Q Consensus 229 a~~~L~~l~~~~~~~~~-~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~ 302 (542)
++.++..+......+.. ......... +..++.+.++++++..+.+..|+.....+....+.....++.+..+-.
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~ 722 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQK 722 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 77777766655444443 222245566 888899999999999998888877666666666666666665555433
No 145
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.30 E-value=0.0097 Score=60.57 Aligned_cols=293 Identities=16% Similarity=0.121 Sum_probs=151.5
Q ss_pred HhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcC
Q psy12594 47 VPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDK 125 (542)
Q Consensus 47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 125 (542)
+...+ .++.....|+..+.+.. .+ |+..+. .+..++++..+++..+|..|+..|..+|.++++... .
T Consensus 29 l~~~k-g~~k~K~Laaq~I~kff--k~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~----k 96 (556)
T PF05918_consen 29 LDGVK-GSPKEKRLAAQFIPKFF--KHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS----K 96 (556)
T ss_dssp HHGGG-S-HHHHHHHHHHHHHHH--CC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH----H
T ss_pred HHHcc-CCHHHHHHHHHHHHHHH--hhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh----H
Confidence 34444 46889999999999999 77 777554 567899999999999999999999999988755544 2
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc---CCCHhHHHHHHHHHHHHhcC-CHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA---SPQLSLKHAAAFALDGIVKH-SPEL 201 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~nl~~~-~~~~ 201 (542)
+...|+++|+++++.....+-.+|..+...++.. .+..+..-+. ..+..+|+.++..|..-... .++.
T Consensus 97 vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~ 168 (556)
T PF05918_consen 97 VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPEL 168 (556)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHH
Confidence 4568999999999887777778888777655442 2333444333 45678899988777532221 1111
Q ss_pred HH--HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC----ChhhHHHHHhhchHH-HHHhh------cCCChhHHH
Q psy12594 202 AE--SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD----SPSLASTIADGATTL-AVEHL------TYPHGLVQK 268 (542)
Q Consensus 202 ~~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~-L~~lL------~~~~~~v~~ 268 (542)
.. .=.+.-++..+-+.|.+-..+--.....+|..+-.. ...-+. .+++ +.... ...|++...
T Consensus 169 ~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~q-----eLv~ii~eQa~Ld~~f~~sD~e~Id 243 (556)
T PF05918_consen 169 LTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQ-----ELVDIIEEQADLDQPFDPSDPESID 243 (556)
T ss_dssp S---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHH-----HHHHHHHHHHTTTS---SSSHHHHH
T ss_pred hhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHH-----HHHHHHHHHhccCCCCCCcCHHHHH
Confidence 10 001111234555666654444444455555555431 111112 2233 22222 222555555
Q ss_pred HHHHHHHH----HhcCC--hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594 269 NAATLLRD----MCKHN--LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI 342 (542)
Q Consensus 269 ~a~~~L~~----L~~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 342 (542)
..+.|+.. ++... ......+. ..++|.+-.+ ....+..-+.++..++....... ....++.+..+
T Consensus 244 rli~C~~~Alp~fs~~v~Sskfv~y~~-~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d----~~~~L~~i~~~ 314 (556)
T PF05918_consen 244 RLISCLRQALPFFSRGVSSSKFVNYMC-EKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD----ARQLLPSIFQL 314 (556)
T ss_dssp HHHHHHHHHGGG-BTTB--HHHHHHHH-HHTCCCTT---------HHHHHHHHHHHHHTT----T----HHHHHHHHHHH
T ss_pred HHHHHHHHhhHHhcCCCChHHHHHHHH-HHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHH
Confidence 55555443 22211 22222222 2344433222 44567777888888776543211 11234444444
Q ss_pred hc----CCC-h----hhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 343 LQ----CPH-K----EQLQVAAAWTLGQIGKHSVDNVTAL 373 (542)
Q Consensus 343 l~----~~~-~----~~v~~~a~~~L~~l~~~~~~~~~~l 373 (542)
|. ... . -...+..++++.+|+...|+....+
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~l 354 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNFL 354 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-THHHH--
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhhH
Confidence 42 211 1 2356778889999988887755444
No 146
>KOG1943|consensus
Probab=97.28 E-value=0.13 Score=55.42 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=101.3
Q ss_pred chHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC-ccchHHHHHHHhHhhcCChHHHH
Q psy12594 251 ATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQSEQIAE 328 (542)
Q Consensus 251 ~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~ 328 (542)
.+++ |+..+.+.|..++..|+..+..++...|.. +. ..++..+++++...+ +..-..|+.+|+.++...--.-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 6777 888889999999999999999999887622 11 355666677555544 44556788888888754221111
Q ss_pred HHHhhCchHHHHHhhcCC-------ChhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHH
Q psy12594 329 QIIELQGVGSLQTILQCP-------HKEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKITQTCVSDNLKSKCK 400 (542)
Q Consensus 329 ~~~~~~~l~~L~~ll~~~-------~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~ 400 (542)
.+. .++|.++.-+.-+ ....||.+||+.++.++.... .....+...=.-..|+..+-++ +..+|+.|.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr--evncRRAAs 492 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR--EVNCRRAAS 492 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc--hhhHhHHHH
Confidence 111 3555555444321 225799999999999986643 3333333221222333444444 568999999
Q ss_pred HHHHHHHhhCCCchhhHHhhc
Q psy12594 401 NALNILIPKCENPKELEQMLL 421 (542)
Q Consensus 401 ~aL~nl~~~~~~i~~L~~lL~ 421 (542)
.|+...+.+.+..|.=++++.
T Consensus 493 AAlqE~VGR~~n~p~Gi~Lis 513 (1133)
T KOG1943|consen 493 AALQENVGRQGNFPHGISLIS 513 (1133)
T ss_pred HHHHHHhccCCCCCCchhhhh
Confidence 999888766455543334443
No 147
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.27 E-value=0.00078 Score=42.73 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=35.3
Q ss_pred HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594 200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238 (542)
Q Consensus 200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 238 (542)
+.+..+.+.|+++.|++++.+.++++++.++|+|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 467778899999999999998899999999999999973
No 148
>KOG1991|consensus
Probab=97.25 E-value=0.4 Score=51.44 Aligned_cols=385 Identities=15% Similarity=0.106 Sum_probs=210.9
Q ss_pred HHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc------c--CCHHHHHHHHHHHHHHhcC---ChhhhhHhhcCCh
Q psy12594 59 HAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT------K--QNKHYKKTALHMLTCVAQQ---DERCAGLIEDKDL 127 (542)
Q Consensus 59 ~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~------~--~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~g~v 127 (542)
.+|...+..+++...++.- .+.++.+++.+. . .++.-+..|+.+++++++. ....+...+.=++
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 3555566666632223331 345566667666 2 3355667788888888732 1111123333345
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESAS 206 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 206 (542)
+.+...++++--.+|..|||++..++..+-. ..-.-..++......|. +.+..++..|+.+|..+.++.+.....+.
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 5666677788889999999999999832111 11111123556667777 66788999999999999986654323222
Q ss_pred h--CCChHHHHHhhcCCCHHHHHHHHHH-HHHHhcCChhhHHHHHhhchHH-HHHhhcC---C---ChhHHHHHHHHHHH
Q psy12594 207 D--CDVIPLLIKALNNDEVNVKADAFLC-LADIAKDSPSLASTIADGATTL-AVEHLTY---P---HGLVQKNAATLLRD 276 (542)
Q Consensus 207 ~--~~~i~~L~~ll~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~---~---~~~v~~~a~~~L~~ 276 (542)
. .+.++.|+.+.+..+.+....+... +...+..-..+...+.+ .... ..+++.. . +++=...|.++|+.
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 0 2344455555555444444443333 33444332223333332 3444 5666663 1 23334455566655
Q ss_pred Hhc------CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhh
Q psy12594 277 MCK------HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQ 350 (542)
Q Consensus 277 L~~------~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 350 (542)
+.. ..|+..+. .+.-+++.+-..|++.-.++-..++..+.++....++..-.++ +.++.+.+.+.... -+
T Consensus 622 i~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~-~d 697 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQ-LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDG-ID 697 (1010)
T ss_pred HHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhh-HH
Confidence 432 12333221 2334455555666666566666777777666655444333334 47777788887743 35
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHc-----CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC-----chhhHHhh
Q psy12594 351 LQVAAAWTLGQIGKHSVDNVTALCEE-----NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN-----PKELEQML 420 (542)
Q Consensus 351 v~~~a~~~L~~l~~~~~~~~~~l~~~-----~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~-----i~~L~~lL 420 (542)
.-....-+|.|+...... .+.+. -.+...-..+.+.+..+.=...|+..+.-++.+|+. +|.++++.
T Consensus 698 yf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a 774 (1010)
T KOG1991|consen 698 YFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELA 774 (1010)
T ss_pred HHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHH
Confidence 566778888887654322 12222 123344455555544445556688888888877766 66665532
Q ss_pred c----C-CCCHHHHHHHHHHHHhhCCCChhh-hhHHHHhcchHH
Q psy12594 421 L----G-NVSEELLASILCAFAKILPCDPVA-RRSFVTSHCLRK 458 (542)
Q Consensus 421 ~----~-~~~~~v~~~~l~~l~~ll~~~~~~-~~~~~~~g~~~~ 458 (542)
- . ..+......++..+.|.+-..|.. ...+...|....
T Consensus 775 ~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ 818 (1010)
T KOG1991|consen 775 LSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNN 818 (1010)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCccc
Confidence 2 1 234456667777777666555543 233334444433
No 149
>KOG4151|consensus
Probab=97.21 E-value=0.0067 Score=62.91 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=154.5
Q ss_pred cCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHH-HhHccCC-hHHHHHHHhcCcHHHHHHhhccCC-HHHHHHH
Q psy12594 28 ADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLG-KLMCAKH-VDIRQEVLERNLVALVLKDLTKQN-KHYKKTA 104 (542)
Q Consensus 28 ~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~-~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~-~~~~~~a 104 (542)
+....-+...++.|+...|..+..-..+..+..+..+|. .+. .. ... ...++.+...+.... ..-...+
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~~------~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGERS------YEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCch------hhhhhhhcchhhhhHHHHHHHHH
Confidence 445666677788899999999887777777777777777 333 11 111 123334444443322 2334578
Q ss_pred HHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhccCCCHh
Q psy12594 105 LHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ-CGALPPLVQILASPQLS 182 (542)
Q Consensus 105 ~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~ 182 (542)
+.+++|+++.++..+. +.....++.+-.++..+++..+..++..+.||.....-+.+.+.+ ...++....++......
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~ 642 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEK 642 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhH
Confidence 8899999988777776 888888888778888889999999999999999866666666666 34566666666666778
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594 183 LKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254 (542)
Q Consensus 183 ~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 254 (542)
...+++.++..|+......+. ..--......+..++.+.+.+++...+....|+.....+....+.+...++
T Consensus 643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~ 715 (748)
T KOG4151|consen 643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVME 715 (748)
T ss_pred HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHH
Confidence 888888888877765544444 333356678888999999999999999998887666555566666655555
No 150
>KOG3036|consensus
Probab=97.20 E-value=0.053 Score=48.33 Aligned_cols=143 Identities=14% Similarity=0.160 Sum_probs=105.9
Q ss_pred HHHHHHHhcCCCCchHHHHhCCchHHHHhhhc-----CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc
Q psy12594 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA-----DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT 94 (542)
Q Consensus 20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~-----s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~ 94 (542)
++..+-.++.+|+.|..|.++.+=-.|-.+|. ...+-.|..++.+++.|....+.+....+...+++|..++.+.
T Consensus 99 aL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred HHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 45556677889999999999887555666663 2356789999999999995445778888889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhhhHhh--------cCChH-HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 95 KQNKHYKKTALHMLTCVAQQDERCAGLIE--------DKDLD-SIISSLHDFDPDTRANAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------~g~v~-~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 163 (542)
.+++..+.-|.+++..+..++.....+.. .-.+. .+.++.+.+++.+...++++..+++. ++..+..+
T Consensus 179 ~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL 255 (293)
T KOG3036|consen 179 SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAAL 255 (293)
T ss_pred cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 99999999999999998766544433111 01222 23344556778888899999999876 66655544
No 151
>KOG1991|consensus
Probab=97.18 E-value=0.12 Score=55.07 Aligned_cols=300 Identities=13% Similarity=0.100 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhc------CC--ChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCc
Q psy12594 15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA------DK--VPSIQHAALATLGKLMCAKH-VDIRQEVLERNL 85 (542)
Q Consensus 15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~------s~--~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~ 85 (542)
..+..+...+..+++ ....+.+ .+.++.++..++ .+ ++.....|+..++.|++.-. +..-....+.=.
T Consensus 387 sp~~Aa~~~l~~~~~-KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl 463 (1010)
T KOG1991|consen 387 SPDTAALDFLTTLVS-KRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL 463 (1010)
T ss_pred CCcHHHHHHHHHHHH-hcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 334444444555544 2223333 466777777776 22 34556678888888883222 222222234445
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIV 164 (542)
Q Consensus 86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 164 (542)
++.+...++++.-..|..||+++..++.-+-.... .-..+++...+.|. +.+--++..|+.+|..+.+..+...+.+.
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~-~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPN-NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 66667778888899999999999999843211111 11235566667776 66677899999999999876554323332
Q ss_pred Hc--CChHHHHHhccCCCHhHHHHHH-HHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC---C---CHHHHHHHHHHHHH
Q psy12594 165 QC--GALPPLVQILASPQLSLKHAAA-FALDGIVKHSPELAESASDCDVIPLLIKALNN---D---EVNVKADAFLCLAD 235 (542)
Q Consensus 165 ~~--g~i~~L~~ll~~~~~~~~~~a~-~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~---~---~~~~~~~a~~~L~~ 235 (542)
.. +.++.|+.+.+.-+.+....++ ..++..+..-......+. ......+.+++.. . +.+-.-.|..+|..
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 22 3455566666654422222222 222333322111222222 3344667777763 1 22222333333333
Q ss_pred Hhc---CChhhHHHH--HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594 236 IAK---DSPSLASTI--ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS 309 (542)
Q Consensus 236 l~~---~~~~~~~~~--~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 309 (542)
+.. .-++..+.+ .+..+++ +-..|++.-.++-+.++....+++...++....+ -+.++.+.+.+......--
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf 699 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYF 699 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHH
Confidence 321 111111111 2245566 6666777778888888888888876554333222 2455666777776666666
Q ss_pred HHHHHHHhHhhc
Q psy12594 310 LPAIMALGYMSA 321 (542)
Q Consensus 310 ~~a~~~L~~l~~ 321 (542)
....-+|.|+..
T Consensus 700 ~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 700 TDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHhhhee
Confidence 667778887765
No 152
>KOG1248|consensus
Probab=97.12 E-value=0.61 Score=51.13 Aligned_cols=228 Identities=14% Similarity=0.090 Sum_probs=137.4
Q ss_pred CCCHhHHHHHHHHHHHHhcCCHHHHHHhhh---CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594 178 SPQLSLKHAAAFALDGIVKHSPELAESASD---CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254 (542)
Q Consensus 178 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 254 (542)
+.+..+|..+...|..++.. +.. ....+ ..+...|.+-+++.+...+...+.+|..|-+..+.-...++...+.+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34688999999999999985 211 11111 11224444555556777888888888888776542222333334444
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCC------hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHH
Q psy12594 255 AVEHLTYPHGLVQKNAATLLRDMCKHN------LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAE 328 (542)
Q Consensus 255 L~~lL~~~~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 328 (542)
++-.+++.+...++++..+|..++... .+.....+ ...++.|...+-.+...+....+-++..+.....+...
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~l-nefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAIL-NEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHH-HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444447779999999999999998310 00001111 12233333333333333333324455555432222111
Q ss_pred HHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 329 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
...=.+++..+...|.+. .++++..|...+.-++...|+....-....+++.+..++++. ...+|.+....|--|+.
T Consensus 822 ~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~--k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH--KIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHH
Confidence 111124566666777774 469999999999999888887655555556889999988876 35888888888888887
Q ss_pred hCC
Q psy12594 409 KCE 411 (542)
Q Consensus 409 ~~~ 411 (542)
+++
T Consensus 899 kfg 901 (1176)
T KOG1248|consen 899 KFG 901 (1176)
T ss_pred HhC
Confidence 764
No 153
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.11 E-value=0.011 Score=49.59 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=99.5
Q ss_pred HHHHHHHcCChHHHHHhccCCC------HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHH
Q psy12594 159 FAERIVQCGALPPLVQILASPQ------LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAF 230 (542)
Q Consensus 159 ~~~~i~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~ 230 (542)
+...++..++++.|++++.++. .+....++.++..|..++ ......++..++..++..+... +..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 3567888899999999998865 367778888999998865 3344555566777777777644 688999999
Q ss_pred HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594 231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
..|-++...++.....+.+.--++ |+.+|+.++++++.++...+-.|....++
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 999999999887777777777788 99999999999999999999888765543
No 154
>KOG4653|consensus
Probab=97.07 E-value=0.019 Score=59.96 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=137.3
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc
Q psy12594 45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED 124 (542)
Q Consensus 45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 124 (542)
..+..+.++.+.++..|+..|+++. +..+....+...+++...++.|+++++.+...|+..+..+|.-- ..
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~--e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy-------~e 801 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLI--EKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY-------PE 801 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc-------ch
Confidence 3444556666788999999999999 75555566667789999999999999999999999888887543 23
Q ss_pred CChHHHHh-hhcCCC---HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594 125 KDLDSIIS-SLHDFD---PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200 (542)
Q Consensus 125 g~v~~Lv~-lL~~~~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~ 200 (542)
..+|.+.+ ..+..+ ++.+...-.++.++...-.+......+ -++..++..+++++...|..++..++++|.-..-
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 56677766 333221 344444456666665322222222222 3467788888888888999999999999973221
Q ss_pred HHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHh---hchHH-HHHhhcCC-ChhHHHHHHHHH
Q psy12594 201 LAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIAD---GATTL-AVEHLTYP-HGLVQKNAATLL 274 (542)
Q Consensus 201 ~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~-L~~lL~~~-~~~v~~~a~~~L 274 (542)
.....+ ...+..++.+.. +....+|+.|+..+..+-.......-.+.. ..... +.+..... +..++..++.++
T Consensus 881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 111111 122333444444 557789999999998887654321111111 12223 33333333 455666666555
Q ss_pred HHH
Q psy12594 275 RDM 277 (542)
Q Consensus 275 ~~L 277 (542)
-.+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 443
No 155
>KOG2274|consensus
Probab=97.07 E-value=0.16 Score=53.77 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=143.4
Q ss_pred CCChHHHHHHHHHHHHhHccC--ChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594 52 DKVPSIQHAALATLGKLMCAK--HVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD 128 (542)
Q Consensus 52 s~~~~v~~~a~~~L~~l~~~~--~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~ 128 (542)
++.|..-..+.-++...++.. .+..... .+...+..+. +..+.++..|+.+++..++. ....-...++++
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~-----fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH-----FLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH-----HHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccchHHHH
Confidence 445666667777777666221 1222111 2333344444 45577888888888887722 111123446778
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc--CCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594 129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA--SPQLSLKHAAAFALDGIVKHSPELAESAS 206 (542)
Q Consensus 129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 206 (542)
.|.++......++......+|...+.-+|+. ....++.+.|.++.++. +++|.+...+-.++..++. ...+... .
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~-m 610 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGP-M 610 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcc-h
Confidence 8888888778888888888999988878774 34445566776666553 3457777777777777776 2222222 2
Q ss_pred hCCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChh-hHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhc
Q psy12594 207 DCDVIPLLIKALNNDE----VNVKADAFLCLADIAKDSPS-LASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCK 279 (542)
Q Consensus 207 ~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~ 279 (542)
....+|.++..+..+. ......++..|..+.+..+. ..+.+.. -+.| +.++.-++ |.+...++..||+.+..
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 3567899999998665 67888888888888776543 4444443 4556 77666554 88999999999999876
Q ss_pred CChHH
Q psy12594 280 HNLRL 284 (542)
Q Consensus 280 ~~~~~ 284 (542)
...+.
T Consensus 690 ~~~eq 694 (1005)
T KOG2274|consen 690 VTLEQ 694 (1005)
T ss_pred cCHHH
Confidence 65443
No 156
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.06 E-value=0.027 Score=49.42 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=73.6
Q ss_pred CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHh
Q psy12594 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEH 258 (542)
Q Consensus 180 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~l 258 (542)
++.+|..++.+++.|+...|...+ ..++.+...|.++++.+|..|+.+|..|...+.--. ...++. ++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 467899999999999986554443 446899999999999999999999999987642111 123336 8889
Q ss_pred hcCCChhHHHHHHHHHHHHhcC
Q psy12594 259 LTYPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 259 L~~~~~~v~~~a~~~L~~L~~~ 280 (542)
+.+++++++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 157
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.05 E-value=0.02 Score=50.28 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc
Q psy12594 97 NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL 176 (542)
Q Consensus 97 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll 176 (542)
++.+|..++.+++.++..-+.... ..++.+...|+++++.+|..|+.+|.+|...+.-- .+..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence 478899999999999865544333 45789999999999999999999999998532110 0112247788889
Q ss_pred cCCCHhHHHHHHHHHHHHhcC
Q psy12594 177 ASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 177 ~~~~~~~~~~a~~~L~nl~~~ 197 (542)
.+++++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999884
No 158
>KOG1020|consensus
Probab=97.04 E-value=0.85 Score=51.36 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=92.7
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
+.+..++..+..+-..+|..|+++|..+. .-+...- ....+-..+-.-+.+....||..|+..++......++...
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~iv--e~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIV--EADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHH--hcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 45667777777777899999999999999 5422110 1112223344456667889999999999985433333222
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc---cCCCHhHHHHHHHHHHHHhc
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL---ASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll---~~~~~~~~~~a~~~L~nl~~ 196 (542)
.....+..-..++...||..+++.+..++...|.+... +....+++ .++...++..+..++.++-.
T Consensus 892 ----qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 ----QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred ----HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 12234555556677899999999999999877775322 33344444 34445588888888888765
No 159
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.04 E-value=0.0056 Score=47.19 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC
Q psy12594 142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221 (542)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~ 221 (542)
|..++.+|..++..-+.......+ .++++++..+.+++..+|..|+.+|.|++.......-.. -..+.+.|.+++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 455666666666433332222222 358999999999999999999999999998543222221 245678889999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy12594 222 EVNVKADAFLCLADI 236 (542)
Q Consensus 222 ~~~~~~~a~~~L~~l 236 (542)
++.++..| +.|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99987766 555554
No 160
>KOG4653|consensus
Probab=97.04 E-value=0.02 Score=59.76 Aligned_cols=223 Identities=13% Similarity=0.082 Sum_probs=146.6
Q ss_pred HHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594 172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA 251 (542)
Q Consensus 172 L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 251 (542)
-+..+.++.+.++-.++..|..+.+ ..+....+...+++..+...+++.|+.+--+|+..+..||.-.++ .
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~ 802 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D 802 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence 3445566668899999999999998 335556666788999999999999999999999988888876442 5
Q ss_pred hHH-HHHhhcCC----ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHH
Q psy12594 252 TTL-AVEHLTYP----HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQI 326 (542)
Q Consensus 252 ~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 326 (542)
++| +.....+. ..+.+-.+-.++.++...-.+....-. ...+.......++++...|..++..+|+++.-..-.
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 667 66643322 234555555777777654333322221 134555666667777778999999999998644322
Q ss_pred HHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHH---cCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 327 AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCE---ENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 327 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
.... -..++..++.+.+.+....+|.+|...+..+..+..+..-.+.. .+....+......++ ++.+|..|+-++
T Consensus 882 vsd~-~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~-dd~~klhaql~l 959 (982)
T KOG4653|consen 882 VSDF-FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHD-DDGLKLHAQLCL 959 (982)
T ss_pred hhHH-HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 2221 12466667777777666789999999999887665543333332 234455555555543 456777777666
Q ss_pred HHH
Q psy12594 404 NIL 406 (542)
Q Consensus 404 ~nl 406 (542)
-.+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 544
No 161
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.03 E-value=0.0053 Score=47.34 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--hhchHH-HHHhhc
Q psy12594 184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA--DGATTL-AVEHLT 260 (542)
Q Consensus 184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~-L~~lL~ 260 (542)
|..++.+|...+..-+....... ..++++++..+.+++..+|..|+.+|.|+++... ..+. -..+.+ |..++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence 55667777777665444444333 5677999999999999999999999999997642 2222 256788 999999
Q ss_pred CCChhHHHHHH
Q psy12594 261 YPHGLVQKNAA 271 (542)
Q Consensus 261 ~~~~~v~~~a~ 271 (542)
++++.|+..|.
T Consensus 79 D~d~~Vr~~a~ 89 (97)
T PF12755_consen 79 DPDENVRSAAE 89 (97)
T ss_pred CCchhHHHHHH
Confidence 99999887774
No 162
>KOG3036|consensus
Probab=97.02 E-value=0.23 Score=44.44 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-----CHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHH
Q psy12594 101 KKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-----DPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQ 174 (542)
Q Consensus 101 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ 174 (542)
...++..|..++++.+....+.+...--.+-.+|... ..-+|..++.+++.+.. ++.+....+...++||..++
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 4456666666777764444487777666666666533 36789999999999984 45567777888899999999
Q ss_pred hccCCCHhHHHHHHHHHHHHhcCCHHHH------H--HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy12594 175 ILASPQLSLKHAAAFALDGIVKHSPELA------E--SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245 (542)
Q Consensus 175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~------~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 245 (542)
.+..++...+..|..++..|-.++.-.. + ..+..-.-..+.++.+.+++.+..+++++..+|+.+. ..+.
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~ 253 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARA 253 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHH
Confidence 9999999999999999999887542111 1 1111111134455566788999999999999998764 3444
No 163
>KOG2062|consensus
Probab=97.00 E-value=0.034 Score=57.15 Aligned_cols=155 Identities=16% Similarity=0.124 Sum_probs=98.1
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh-hhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594 255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL-IDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL 333 (542)
Q Consensus 255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 333 (542)
+-+++.+.|+-+|......+..--.+.. +.+++..|++. .++.+..|+.+|+.+||-++..+++.
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~------- 589 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ------- 589 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-------
Confidence 4456666688888776655432211111 23456667776 67788899999999999988887754
Q ss_pred CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-C-
Q psy12594 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-E- 411 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-~- 411 (542)
++..+++|..+.++.||..++.+||-.|++.-... ++..|=.+..++ ..-||..|+-++.-++.++ +
T Consensus 590 --~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~--~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 590 --LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDP--VDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred --chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcCh--HHHHHHHHHHHHHHHHHhcccc
Confidence 45567788777778999999999999988754211 223333334433 4468998988888775332 1
Q ss_pred -------CchhhHHhhcCCCCHHHHHHHHHH
Q psy12594 412 -------NPKELEQMLLGNVSEELLASILCA 435 (542)
Q Consensus 412 -------~i~~L~~lL~~~~~~~v~~~~l~~ 435 (542)
+.+.+.+++. ++.++........
T Consensus 659 ~~pkv~~frk~l~kvI~-dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVIN-DKHEDGMAKFGAI 688 (929)
T ss_pred cCchHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 2244445555 5555544443333
No 164
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.98 E-value=0.036 Score=46.53 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=98.5
Q ss_pred HHHhhhCCChHHHHHhhcCCC------HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHH
Q psy12594 202 AESASDCDVIPLLIKALNNDE------VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAAT 272 (542)
Q Consensus 202 ~~~~~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~ 272 (542)
...++..++++.|++++.++. .++...++.++..|..++.-..+ ......+. ++...... |..+...+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 456778999999999999765 47888899999999988643444 44456666 77777765 7899999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh
Q psy12594 273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE 324 (542)
Q Consensus 273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 324 (542)
.|-++..+++.....+.+.-.++.|+..|+..++.++..++..+-.|-...+
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999998877777777789999999999999999999988777655433
No 165
>KOG2062|consensus
Probab=96.96 E-value=0.025 Score=58.08 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=89.2
Q ss_pred HHHHHhhhcCCccchHHHHHHHhH--hhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHH
Q psy12594 295 DGLLRLIDCNGGYNSLPAIMALGY--MSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA 372 (542)
Q Consensus 295 ~~Lv~lL~~~~~~~~~~a~~~L~~--l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 372 (542)
+.+-+++.+.++-+|..++.+++- ...++ .+++..|+..--+..+++||.+|..+||-++..+|++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence 445567777888788877765542 22222 3567777777555556799999999999999988884
Q ss_pred HHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC---chhhHHhhcCCCCHHHHHHHHHHHHhhCC
Q psy12594 373 LCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN---PKELEQMLLGNVSEELLASILCAFAKILP 441 (542)
Q Consensus 373 l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~---i~~L~~lL~~~~~~~v~~~~l~~l~~ll~ 441 (542)
.+..+.+|..+ .++.||..++.||+-.+...|. +..|..+.. +...-|++-++-++.-|+-
T Consensus 590 ------~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 ------LPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS-DPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ------chHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHH
Confidence 46778888765 4789999999999987755432 555666655 5555677777777665543
No 166
>KOG1967|consensus
Probab=96.96 E-value=0.011 Score=62.10 Aligned_cols=186 Identities=17% Similarity=0.158 Sum_probs=126.1
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH-------------HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHH
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPEL-------------AESASDCDVIPLLIKALNNDEVNVKADAFLCLAD 235 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 235 (542)
...|+.+|+++ ++-..++.++.-+..+++.. ++.++ ..++|.|...+...+...+..-..+|.+
T Consensus 817 a~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 34566777654 33444555566555544322 22333 5678899988886677788888889999
Q ss_pred HhcCChhhHHHH-HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC---ccchH
Q psy12594 236 IAKDSPSLASTI-ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG---GYNSL 310 (542)
Q Consensus 236 l~~~~~~~~~~~-~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~~~~ 310 (542)
+-.+-|. .... .-..++| |++.|+-+|..++..+..++.-+....+.....-+ .-.+|.++.+-.+.+ ..+|.
T Consensus 894 Vl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~ 971 (1030)
T KOG1967|consen 894 VLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRE 971 (1030)
T ss_pred HHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHH
Confidence 8887663 2111 1256788 89999999999999999999887765544332111 245677777766665 34899
Q ss_pred HHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHH
Q psy12594 311 PAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLG 360 (542)
Q Consensus 311 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 360 (542)
.|+.+|+.|...-|...-...+..++..|...|.+ +...+|++|..+=+
T Consensus 972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD-kKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD-KKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHhccCCCcccccccHHHHHHhhhccCc-HHHHHHHHHHHHhh
Confidence 99999999988544443334445788889999988 45688998886643
No 167
>KOG2274|consensus
Probab=96.93 E-value=0.4 Score=50.89 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=146.9
Q ss_pred CCHHHHHHHHHHHHHhhcCC---hHHHHHHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594 137 FDPDTRANAALALGGLAKDN---KHFAERIVQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212 (542)
Q Consensus 137 ~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~ 212 (542)
..|.+...+.+++...+... +.....+ +...+..+. +..+.++..|+.+++..+. ++..... ..++++
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~f-----l~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild 533 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHF-----LNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILD 533 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHH-----HHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHH
Confidence 34666668888888776532 2222222 222333333 3447788888888887773 2222222 256778
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CC-ChhHHHHHHHHHHHHhcCChHHHHHHH
Q psy12594 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YP-HGLVQKNAATLLRDMCKHNLRLANLVV 289 (542)
Q Consensus 213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~ 289 (542)
.|+++....+.++......+|+..+.-+++... ..+..+.| .+.+.. .. |+.+...+-.++-.++. ...+...+
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m- 610 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGPM- 610 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcch-
Confidence 888998888999999999999999998875544 44557777 555543 33 78777777777777774 22222212
Q ss_pred hcCCHHHHHHhhhcCCc----cchHHHHHHHhHhhcCCh-HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594 290 LAGGLDGLLRLIDCNGG----YNSLPAIMALGYMSAQSE-QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK 364 (542)
Q Consensus 290 ~~~~i~~Lv~lL~~~~~----~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 364 (542)
....+|.++..+..+++ .....|+..|..+.++.+ ...+.++ .-+.|.+.++.-+..+......+..+|..+..
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 23578999999988773 355566667776666443 3333343 36788888887776666777789999998887
Q ss_pred CChHHHHHHHH
Q psy12594 365 HSVDNVTALCE 375 (542)
Q Consensus 365 ~~~~~~~~l~~ 375 (542)
.+.++...--.
T Consensus 690 ~~~eq~~t~~~ 700 (1005)
T KOG2274|consen 690 VTLEQLLTWHD 700 (1005)
T ss_pred cCHHHHHhhcc
Confidence 77665544433
No 168
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.88 E-value=0.54 Score=46.51 Aligned_cols=128 Identities=14% Similarity=0.214 Sum_probs=98.3
Q ss_pred Hhh-cCChHHHHhhhcCCC---HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-C---CCHhHHHHHHHHHH
Q psy12594 121 LIE-DKDLDSIISSLHDFD---PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-S---PQLSLKHAAAFALD 192 (542)
Q Consensus 121 ~~~-~g~v~~Lv~lL~~~~---~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~---~~~~~~~~a~~~L~ 192 (542)
+++ ......|...+++.. +.+-..|+..+..+....|.....+.+.|+++.+++.+. . ++.++....-.+|+
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 666 556677777777654 788889999999999989999999999999999999888 3 24677777778889
Q ss_pred HHhcCCHHHHHHhhhCCChHHHHHhhcCCC-------HHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594 193 GIVKHSPELAESASDCDVIPLLIKALNNDE-------VNVKADAFLCLADIAKDSPSLASTIAD 249 (542)
Q Consensus 193 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~ 249 (542)
.||- +.+..+.+.+.+.++.+.+++.+++ .+.....-..+-.|.++.|..+..+.+
T Consensus 181 AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 181 AICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9998 7788999999999999999987542 133344445666777777766665443
No 169
>KOG1248|consensus
Probab=96.87 E-value=0.44 Score=52.20 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=137.1
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhhhhHh---hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChH
Q psy12594 95 KQNKHYKKTALHMLTCVAQQDERCAGLI---EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-HFAERIVQCGALP 170 (542)
Q Consensus 95 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~ 170 (542)
+.+..+|..+..+|..++... ...... -..+...|.+-+++.....+...+.+|..+....+ ++...+ ..- |+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~-I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKL-IP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHH-HH
Confidence 457889999999999988762 222211 11344556666666667778888888888775444 332332 222 55
Q ss_pred HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh---CCChHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhh
Q psy12594 171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD---CDVIPLLIKALNN----DEVNVKADAFLCLADIAKDSPSL 243 (542)
Q Consensus 171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~---~~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~ 243 (542)
-++-+++..+...++.+..+|..|+... ......+ ...+..++..+.. ....+...-+-++..+.....+.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~--~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQ--SSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHH--hhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555558888889999999998888310 0000000 1133444444432 22333333245555554433333
Q ss_pred HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
.....-.+++. +...|.+.+++++..|+..+.-++..-|+..-.-.....++.+..+++.....++...-..+-.++.
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333356777 8888899999999999999999988777655434445678888888887777777766666665553
No 170
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.80 E-value=0.21 Score=48.20 Aligned_cols=201 Identities=11% Similarity=0.142 Sum_probs=141.3
Q ss_pred HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH-----HHHhhh--CCChHHHHHhhcCCCHHHHHHHHHHH
Q psy12594 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL-----AESASD--CDVIPLLIKALNNDEVNVKADAFLCL 233 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~-----~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L 233 (542)
..+...+.+..|+..|..-+-+.|..+..+..++....... ...+.. ..++..|+.-.. ++++.-.+-..|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 45556688999999999888899999999999998754332 222321 223444444444 455666666677
Q ss_pred HHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc---CCHHHHHHhhhcCCccch
Q psy12594 234 ADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA---GGLDGLLRLIDCNGGYNS 309 (542)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~~i~~Lv~lL~~~~~~~~ 309 (542)
...+++. .+...+.....+. +......++-++...|..++..+-...+......... ..+.....+|.+++.-.+
T Consensus 148 Rec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 7777764 5777888888888 9999999999999999999998655554443333332 456788889999999999
Q ss_pred HHHHHHHhHhhcCChHH---HHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594 310 LPAIMALGYMSAQSEQI---AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365 (542)
Q Consensus 310 ~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 365 (542)
..++..||.+....... ...+-+..-+..++.+|++.+ ..+|.+|-..+--++++
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhC
Confidence 99999999998654432 234445577888999999855 58999999888777665
No 171
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.76 E-value=0.17 Score=49.99 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=105.9
Q ss_pred HHHHH-cCChHHHHHhccCCC---HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-C---CCHHHHHHHHHH
Q psy12594 161 ERIVQ-CGALPPLVQILASPQ---LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-N---DEVNVKADAFLC 232 (542)
Q Consensus 161 ~~i~~-~g~i~~L~~ll~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~---~~~~~~~~a~~~ 232 (542)
+.+++ ..+...|...++... +.+-..|+.++..+....|.....+.+.|.++.+++.+. . ++.++....-.+
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 33445 445566667776654 788899999999999988988889999999999998887 3 367888888899
Q ss_pred HHHHhcCChhhHHHHHhhchHH-HHHhhcCCC-------hhHHHHHHHHHHHHhcCChHHHHHHHhc--CCHHHHHHhhh
Q psy12594 233 LADIAKDSPSLASTIADGATTL-AVEHLTYPH-------GLVQKNAATLLRDMCKHNLRLANLVVLA--GGLDGLLRLID 302 (542)
Q Consensus 233 L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~-------~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~i~~Lv~lL~ 302 (542)
|..||-+. ...+.+.+.+.++ +++++.+++ .+.-...-..+-.|.+|.|.....+.+. ..+..+..+-+
T Consensus 179 l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~ 257 (379)
T PF06025_consen 179 LSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLVELGK 257 (379)
T ss_pred HhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999886 4778888889999 999988762 2444555667778899998877655542 23444444444
Q ss_pred cC
Q psy12594 303 CN 304 (542)
Q Consensus 303 ~~ 304 (542)
..
T Consensus 258 ~~ 259 (379)
T PF06025_consen 258 DK 259 (379)
T ss_pred cc
Confidence 33
No 172
>KOG1078|consensus
Probab=96.73 E-value=0.98 Score=47.36 Aligned_cols=245 Identities=14% Similarity=0.097 Sum_probs=127.6
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA 248 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 248 (542)
.+.+-.++++....+...|+.++.++....+... ...+..|..+++++..-+|-.|.++|..++...|.... ..
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l-----~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL-----APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VC 320 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc-----chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-cc
Confidence 4555566777778899999999999887543322 23678888888889999999999999999987653221 11
Q ss_pred hhchHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHH------------
Q psy12594 249 DGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL------------ 316 (542)
Q Consensus 249 ~~~~i~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L------------ 316 (542)
. .+|-++..+.+-.+...|...|..- +.......+. .-++..+.-+.++..-+...|+++|
T Consensus 321 N---~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rLm--~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m 393 (865)
T KOG1078|consen 321 N---LDLESLITDSNRSIATLAITTLLKT--GTESSVDRLM--KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMM 393 (865)
T ss_pred c---hhHHhhhcccccchhHHHHHHHHHh--cchhHHHHHH--HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHH
Confidence 0 0133333333333333333322211 1111111111 1122222222222222333333333
Q ss_pred -----------------------hHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 317 -----------------------GYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL 373 (542)
Q Consensus 317 -----------------------~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 373 (542)
..+...+++... .++..|...+.+.. ...-+.+.|.-++...|. ..
T Consensus 394 ~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce---~~~i~~rILhlLG~EgP~---a~ 462 (865)
T KOG1078|consen 394 NFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE---FTQIAVRILHLLGKEGPK---AP 462 (865)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc---chHHHHHHHHHHhccCCC---CC
Confidence 333332222211 23333333333321 122233333333222111 01
Q ss_pred HHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCc-----hhhHHhhcCCCCHHHHHHHHHHHHhhC
Q psy12594 374 CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENP-----KELEQMLLGNVSEELLASILCAFAKIL 440 (542)
Q Consensus 374 ~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i-----~~L~~lL~~~~~~~v~~~~l~~l~~ll 440 (542)
-....+..+.+...=+ +..+|.+|..||.++...+..+ -.|.+.+. ++|.+++..+--++.++.
T Consensus 463 ~Pskyir~iyNRviLE--n~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~-D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILE--NAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLN-DSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CcchhhHHHhhhhhhh--hhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhc-CchHHHHHHHHHHHHHhh
Confidence 1223455555555444 3589999999999998554432 34555666 899999999998888875
No 173
>KOG1967|consensus
Probab=96.72 E-value=0.013 Score=61.65 Aligned_cols=147 Identities=17% Similarity=0.233 Sum_probs=109.2
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594 124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ--CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 124 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~ 201 (542)
...+|.|++.....+...+..-..+|.++...-|. +.+.. ....|.|++.|.-++..+|..+..++..+....+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 35889999999866667777777788887765554 22222 256889999999999999999999998877655444
Q ss_pred HHHhhhCCChHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHH
Q psy12594 202 AESASDCDVIPLLIKALNNDE---VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATL 273 (542)
Q Consensus 202 ~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~ 273 (542)
...-+ ...+|.++.+=++.+ ..+|..|+.+|..|.+.-|...-.-....++. |...|.++.--+|..|..+
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 44433 456677777776655 67999999999999996554433444567888 9999999988888888765
No 174
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.69 E-value=0.028 Score=51.46 Aligned_cols=100 Identities=22% Similarity=0.122 Sum_probs=85.6
Q ss_pred chHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh
Q psy12594 308 NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT 387 (542)
Q Consensus 308 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 387 (542)
....|++.|--++--++..+..+-+...+..|+.++.....+.++.+++.+|..+...++.+.+.+-+.+++..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567788888887778888888899999999999966555789999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHH
Q psy12594 388 QTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 388 ~~~~~~~v~~~a~~aL~nl~ 407 (542)
+...+.++|.++...|.-.+
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 98878888888877765544
No 175
>PRK14707 hypothetical protein; Provisional
Probab=96.64 E-value=2.1 Score=50.06 Aligned_cols=410 Identities=16% Similarity=0.136 Sum_probs=211.6
Q ss_pred hHHHHhhhc--CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCChhh
Q psy12594 43 VDLIVPLLA--DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 43 i~~L~~lL~--s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
+.+|++-.+ .+++..+..+......++ .++..+..+ ....+..++.-++. +++..+..+ ..|.....+.+..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~--~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa-~~la~~l~~~~~l 240 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVA--SDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAV-SALAERLADESRL 240 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhc--CChhhhccc-chHHHHHHHHHHhcCCCChhHHHHH-HHHHHHHcCcHHH
Confidence 344444443 234555655555555555 555554444 44566666766664 445555444 4444433334455
Q ss_pred hhHhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH-HHHhc
Q psy12594 119 AGLIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL-DGIVK 196 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L-~nl~~ 196 (542)
..-.+...+-..++.|.. ++..+...++..|..-....+..++.+-..++-..|-.+-+=++..+-..|+..| ..|..
T Consensus 241 ~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~ 320 (2710)
T PRK14707 241 RNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD 320 (2710)
T ss_pred HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc
Confidence 443344445555555543 4554555555555543334566666665555333333444445644444444444 44554
Q ss_pred CCHHHHHHhhhCCChHHHHHhhcC-CC-HHHHHHHHHHHHHHhcCChhhHHHHHhhchHHHHHhhcCC-ChhHHHHHHHH
Q psy12594 197 HSPELAESASDCDVIPLLIKALNN-DE-VNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYP-HGLVQKNAATL 273 (542)
Q Consensus 197 ~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~-~~~v~~~a~~~ 273 (542)
+++.+..+- .-.+...++-|+. ++ ...+..+...-..++.+ ++.++.+-..++-.+++-++.- +..+...++..
T Consensus 321 -d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d-~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 321 -DPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVAD-PELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred -cHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccC-HhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 777765544 3344444455543 33 44455555555555555 4566655544544455555554 77777777777
Q ss_pred HHHHhcCChHHHHHHHhcCCHHHHHHhh-hcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHH
Q psy12594 274 LRDMCKHNLRLANLVVLAGGLDGLLRLI-DCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352 (542)
Q Consensus 274 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 352 (542)
|..=..++++..+.+- ...+..++.-| +=++..+-..+...|..-..++.+.++.+--.++...|-.+-+- ++..+-
T Consensus 398 LA~~l~~d~~l~~~~~-~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKW-Pd~p~c 475 (2710)
T PRK14707 398 LAEHVVDDLELRKGLD-PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKW-PDTPIC 475 (2710)
T ss_pred HHHHhccChhhhhhcc-hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcC-CCChhH
Confidence 7765556777666554 34444444444 44666677777777777667777777655444444444344344 444444
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCch---------hhHHhhcCC
Q psy12594 353 VAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPK---------ELEQMLLGN 423 (542)
Q Consensus 353 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~---------~L~~lL~~~ 423 (542)
..|+..|..=..++++.++.+--.++...|-.+-+-++ .....+.+.|.-..+... ..++ .+..-|...
T Consensus 476 ~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd-~~~c~~A~~~lA~rl~~~-~~l~~~~~~~~~~~~lnalSKw 553 (2710)
T PRK14707 476 GQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPD-TPICAEAASALAERVVDE-LQLRKAFDAHQVVNTLKALSKW 553 (2710)
T ss_pred HHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHhccc-hhhhhhhhhHHHHHHHHhhhcC
Confidence 44444444433666666665554555555555555553 233333444444444321 1111 111112113
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC
Q psy12594 424 VSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE 463 (542)
Q Consensus 424 ~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~ 463 (542)
.+......+...|...+...+..+..|-..+..-.+..+.
T Consensus 554 p~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLS 593 (2710)
T PRK14707 554 PDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALS 593 (2710)
T ss_pred CchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhc
Confidence 4445566666666665555555555555444333344444
No 176
>KOG1832|consensus
Probab=96.64 E-value=0.09 Score=55.23 Aligned_cols=327 Identities=11% Similarity=0.080 Sum_probs=171.4
Q ss_pred HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHH-HHHHHHHhHccCChHHHHHH------HhcCcHHHHHHh
Q psy12594 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA-ALATLGKLMCAKHVDIRQEV------LERNLVALVLKD 92 (542)
Q Consensus 20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~-a~~~L~~l~~~~~~~~~~~i------~~~~~l~~Lv~~ 92 (542)
+.+.|+.++.+......|++.|||..|+.. +.+..... .-.+|..|. ......+.+ +-..++..-+.+
T Consensus 373 ~~k~~~~l~~h~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~--~~q~~mervc~~p~~v~~~vv~~~~~l 447 (1516)
T KOG1832|consen 373 VMKLICALAAHRKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIG--SLQGIMERVCALPLVVIHQVVKLAIEL 447 (1516)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHh--hhhhHHHHHhhccHHHHHHHHHHHHHH
Confidence 466778888888899999999998766554 22322222 225566665 322222211 122344444555
Q ss_pred hccCC------HHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcC--------CC---HHHH--------HHHHH
Q psy12594 93 LTKQN------KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHD--------FD---PDTR--------ANAAL 147 (542)
Q Consensus 93 L~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~--------~~---~~~~--------~~a~~ 147 (542)
|.-.. ...-..+++.++.+... +-....+..|+.++++ .+ +++. ...|.
T Consensus 448 ~~cs~~~~~~~~~~ff~~~f~frail~~------fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~ 521 (1516)
T KOG1832|consen 448 LDCSQDQARKNSALFFAAAFVFRAILDA------FDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCF 521 (1516)
T ss_pred HhcchhhccchHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHH
Confidence 65332 23333444444443211 2222445555555431 22 2222 23444
Q ss_pred HHHHhhc-----CChHHHHHHHHcCChHHHHHhccCCC------HhHHHHHHHHHHHHhcCCHH-------HHHHhhhCC
Q psy12594 148 ALGGLAK-----DNKHFAERIVQCGALPPLVQILASPQ------LSLKHAAAFALDGIVKHSPE-------LAESASDCD 209 (542)
Q Consensus 148 ~L~~l~~-----~~~~~~~~i~~~g~i~~L~~ll~~~~------~~~~~~a~~~L~nl~~~~~~-------~~~~~~~~~ 209 (542)
+|..... .-+.+++.-+..|.++..+.-+..+. ..-.++.+|-+..+....+. ..+.+...+
T Consensus 522 alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls 601 (1516)
T KOG1832|consen 522 ALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLS 601 (1516)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhH
Confidence 4443321 12333444455566666665444332 23445566666655554442 334455667
Q ss_pred ChHHHHHhhcCC--------CHHHHHHHHHHHHHHhcCChhhHHHHHh--------hchHH-HHHhhcCC----ChhHHH
Q psy12594 210 VIPLLIKALNND--------EVNVKADAFLCLADIAKDSPSLASTIAD--------GATTL-AVEHLTYP----HGLVQK 268 (542)
Q Consensus 210 ~i~~L~~ll~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~-L~~lL~~~----~~~v~~ 268 (542)
++..++++..-+ ..++...|+.+|.-+..- |+.+..+.. ..++. ++..-... |++++.
T Consensus 602 ~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~ 680 (1516)
T KOG1832|consen 602 GVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQ 680 (1516)
T ss_pred HHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHH
Confidence 788888877632 244566666666544433 345544433 12344 33332221 799999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc-CCcc----------chHHHHHHHhHhhcCChHHHHHHHhhCchH
Q psy12594 269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC-NGGY----------NSLPAIMALGYMSAQSEQIAEQIIELQGVG 337 (542)
Q Consensus 269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~----------~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 337 (542)
.|+.++.|+....|+..... ++....+ +++. .....++- .-..+...+++.
T Consensus 681 ~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~~ks~~le~~l~~----------mw~~Vr~ndGIk 742 (1516)
T KOG1832|consen 681 PALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAGTKSAKLEQVLRQ----------MWEAVRGNDGIK 742 (1516)
T ss_pred HHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCCCchHHHHHHHHH----------HHHHHhcCccHH
Confidence 99999999988876554322 1222221 1111 11111111 123345568999
Q ss_pred HHHHhhcCCCh----hhHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594 338 SLQTILQCPHK----EQLQVAAAWTLGQIGKHSVDNVTALCEEN 377 (542)
Q Consensus 338 ~L~~ll~~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 377 (542)
.|+.+|+.... +.+|..||++|.-|+ .+++.++.+.+..
T Consensus 743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLa-R~~tVrQIltKLp 785 (1516)
T KOG1832|consen 743 ILLKLLQYKNPPTTADCIRALACRVLLGLA-RDDTVRQILTKLP 785 (1516)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhccc-cCcHHHHHHHhCc
Confidence 99999975332 579999999999994 5566666655443
No 177
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.57 E-value=0.11 Score=49.79 Aligned_cols=188 Identities=16% Similarity=0.065 Sum_probs=113.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhccCCCHhHHHHHHHHHHHHhcC--CHHHHH
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ--CGALPPLVQILASPQLSLKHAAAFALDGIVKH--SPELAE 203 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~--~~~~~~ 203 (542)
...+..+.+.....|+.++..+.++...... .+.+.+ ..+++.+.+.++.+..+-+..|+.++.-++-. ......
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 3445555566688899999888887743322 122221 14577888888887765566677777766653 223344
Q ss_pred HhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhc---CChhhHHHHHhhchHH-HHHh--hcC----------CChh
Q psy12594 204 SASDCDVIPLLIKALNND--EVNVKADAFLCLADIAK---DSPSLASTIADGATTL-AVEH--LTY----------PHGL 265 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~-L~~l--L~~----------~~~~ 265 (542)
.++ ....|.|.+.+.+. .+.+|..++.+|+-++. .+++..... ...+. +... .+. +++.
T Consensus 125 ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 555 45678888888865 35666777767666543 222211100 11222 2111 111 1356
Q ss_pred HHHHHHHHHHHHhcCChHH-HHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 266 VQKNAATLLRDMCKHNLRL-ANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 266 v~~~a~~~L~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
+...|+.+-..|...-+.. ..... ...++.|+.+|.+++..+|.+|..+|.-|-
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7888877766666554442 22222 356899999999999999999999888663
No 178
>KOG1566|consensus
Probab=96.53 E-value=0.69 Score=43.13 Aligned_cols=215 Identities=11% Similarity=0.183 Sum_probs=149.8
Q ss_pred HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH----HHHH-hhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594 202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA----STIA-DGATTL-AVEHLTYPHGLVQKNAATLLR 275 (542)
Q Consensus 202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~-~~~~i~-L~~lL~~~~~~v~~~a~~~L~ 275 (542)
...+.++|.+..+++.+..-+-+-+..+.....++-+.....+ +.+. ...++. |+.--.. .+++.-.+...|+
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3456668999999999998888899999999988876443222 2222 234444 4444222 3666666666666
Q ss_pred HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCc----hHHHHHhhcCCChhhH
Q psy12594 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG----VGSLQTILQCPHKEQL 351 (542)
Q Consensus 276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~ll~~~~~~~v 351 (542)
...++ +..++.+....-+.....+...+.-++...|..+...+..........+...+. .+..-.++.+++ --+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N-yvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN-YVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc-eeh
Confidence 66644 455566777788888899999998889999999998887766655555555443 333556777754 478
Q ss_pred HHHHHHHHHHhhcCChH---HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594 352 QVAAAWTLGQIGKHSVD---NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL 421 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~ 421 (542)
+..+...++.+..+.+. ..+.+.+...+..++.+|+++ +..+|.+|-....-+..+..--+++..+|.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk--skniQ~eAFhvFKvfvAnpnK~q~V~~IL~ 299 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK--SKNIQLEAFHVFKVFVANPNKPQPVRDILV 299 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc--cccchHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 88999999998765432 334444557899999999987 468999998888777766544555555555
No 179
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.53 E-value=0.3 Score=46.89 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=116.6
Q ss_pred CChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CHHHH
Q psy12594 125 KDLDSII-SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELA 202 (542)
Q Consensus 125 g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~ 202 (542)
+.++.|+ ..+++.++.+|+.++.+|+-.+--+....... ++.+.+.++.++.+++..|+.++..+... +.+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4444444 77788999999999999998886555433332 67788888777899999999999887652 22222
Q ss_pred HHhh-------hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC----ChhHHHHH
Q psy12594 203 ESAS-------DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP----HGLVQKNA 270 (542)
Q Consensus 203 ~~~~-------~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~----~~~v~~~a 270 (542)
.... ....+..+.+.+.+.+++++..++..++.|--.+. ... ...++. |+-+.-++ +..++...
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-ISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-CCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1111 23456788888888899999999999999865542 111 124455 44443333 46777777
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC
Q psy12594 271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305 (542)
Q Consensus 271 ~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 305 (542)
...+-..+..++.+.+.+ ...+++.+-.+.+..+
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l-~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERL-AEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHHHHHHHhCcc
Confidence 777888887777776544 4567777777666544
No 180
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.51 E-value=0.023 Score=48.56 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=96.7
Q ss_pred hHHHHhhhc--CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 43 VDLIVPLLA--DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 43 i~~L~~lL~--s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
+..++..+. ...+++|..+..++.++.....++..+.+ -+.+-..+...+.+-...++.++..+-...++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~~~~~~-----~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAAREEFKEKI-----SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 344444443 46789999999999988611112222222 12223334443344677778888888878888777
Q ss_pred --HhhcCChHHHHhhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CCHh-HHHHHHHHHHHH
Q psy12594 121 --LIEDKDLDSIISSLH--DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQLS-LKHAAAFALDGI 194 (542)
Q Consensus 121 --~~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~-~~~~a~~~L~nl 194 (542)
+...|.++.++.++. ..+..++..++.+|..-+. +..++..+.+.| ++.|-++++. ++.. ++..|+-.|..+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 557799999999998 6778888888887776554 667677776666 9999999964 4555 788888777653
No 181
>KOG1243|consensus
Probab=96.47 E-value=0.023 Score=58.25 Aligned_cols=228 Identities=14% Similarity=0.148 Sum_probs=148.8
Q ss_pred CchHHHHhCCchHHHHhhhcCCC-hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHH
Q psy12594 32 STIHFLKDLNVVDLIVPLLADKV-PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTC 110 (542)
Q Consensus 32 ~~~~~l~~~g~i~~L~~lL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~ 110 (542)
..-+.+....++|.|...+.-.+ .......+..+.+.. ..++ ...+++|.++++++..+..+|..-+.-+-.
T Consensus 284 ~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~l--d~~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~ 356 (690)
T KOG1243|consen 284 NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDL--DEEE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEK 356 (690)
T ss_pred hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhc--cccc-----cccchhhhHHHHhcCcchHHHHHHHHhHHH
Confidence 34445555667777777665544 222222222233332 2222 356789999999999999999886665555
Q ss_pred HhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHH
Q psy12594 111 VAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAF 189 (542)
Q Consensus 111 l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~ 189 (542)
... .... +++..++|.+...+.+.++.+|+.++.++..++..-. +..+....+..|-++-.+++..+|....-
T Consensus 357 ~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~---~~~Ln~Ellr~~ar~q~d~~~~irtntti 430 (690)
T KOG1243|consen 357 YID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS---KRNLNGELLRYLARLQPDEHGGIRTNTTI 430 (690)
T ss_pred Hhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc---hhhhcHHHHHHHHhhCccccCccccccee
Confidence 442 3333 6677889999999999999999999999998874211 11222223444444444556889999999
Q ss_pred HHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHH
Q psy12594 190 ALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQK 268 (542)
Q Consensus 190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~ 268 (542)
||+.++.+..... ...-.+..+.+-++++-..-|..+.++++.....-+ ..-+...++| +..+..+++..++.
T Consensus 431 clgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~ 504 (690)
T KOG1243|consen 431 CLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD---QSEVANKILPSLVPLTVDPEKTVRD 504 (690)
T ss_pred eecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc---hhhhhhhccccccccccCcccchhh
Confidence 9999988642222 212234566667777877888888888877655432 2223447888 88888888888988
Q ss_pred HHHHHHHHHh
Q psy12594 269 NAATLLRDMC 278 (542)
Q Consensus 269 ~a~~~L~~L~ 278 (542)
.+..++...-
T Consensus 505 ~a~~~i~~fl 514 (690)
T KOG1243|consen 505 TAEKAIRQFL 514 (690)
T ss_pred HHHHHHHHHH
Confidence 8887766554
No 182
>KOG3665|consensus
Probab=96.47 E-value=0.43 Score=51.15 Aligned_cols=194 Identities=15% Similarity=0.083 Sum_probs=122.7
Q ss_pred HHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchH-H-HHHhhcCCCh-h
Q psy12594 190 ALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATT-L-AVEHLTYPHG-L 265 (542)
Q Consensus 190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~-L~~lL~~~~~-~ 265 (542)
+|.+++...++.++.+++.+++..+...+... ..+++..+...+.+++...+..........+- . +-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 78899999999999999999999999999855 56799999999999998653211111111111 2 2234444444 8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHH-HHHhhc
Q psy12594 266 VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGS-LQTILQ 344 (542)
Q Consensus 266 v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~ll~ 344 (542)
.-+.++..|..+..+.+..........+-..+++ ++..+... ....... ..... +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e---------------~i~~~~~~---~~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVE---------------AISRWLTS---EIRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHH---------------HhhccCcc---ceeehhh-hhcchhHHHHhc
Confidence 8888888888887654431110001111111111 12211111 1111111 22222 556666
Q ss_pred CCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 345 CPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 345 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
.+..+..+.-|.|++.+++..+++..+.+.+.++++.+.++-..+. ..+++.++...+
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i 692 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEEAVLVI 692 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHHHHHHh
Confidence 6555678888999999999999999999999999999888777654 455666655443
No 183
>KOG0414|consensus
Probab=96.46 E-value=0.054 Score=58.74 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=118.6
Q ss_pred cHHHHHHhhc----cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHH
Q psy12594 85 LVALVLKDLT----KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHF 159 (542)
Q Consensus 85 ~l~~Lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~ 159 (542)
..|.+++..+ .++|+++..|.-+|+.+..-+.+... ..+|.|+..+. +++|.+|..+.-+++.++...|..
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 4455556654 36789999999999997654433322 35788888887 778999999999999888655543
Q ss_pred HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594 160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239 (542)
Q Consensus 160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 239 (542)
.+.. -+.|...|+++++.+|+.|..+|.+|... ..+.-.|.++-+..++.+++.+++..|-..+-.|+..
T Consensus 996 ie~~-----T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 996 IEPW-----TEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred cchh-----hHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 2222 56788889999999999999999999872 2233378899999999999999999998888888876
Q ss_pred ChhhHHHHHhhchHH-HHHhhcCC
Q psy12594 240 SPSLASTIADGATTL-AVEHLTYP 262 (542)
Q Consensus 240 ~~~~~~~~~~~~~i~-L~~lL~~~ 262 (542)
.... .+++| ++..|++.
T Consensus 1066 ~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred ccch------hhhchHHHHhhccC
Confidence 5322 26778 88888776
No 184
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.45 E-value=1.8 Score=46.96 Aligned_cols=207 Identities=15% Similarity=0.170 Sum_probs=120.1
Q ss_pred HHHHhcCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhc----CCC----HHHHH
Q psy12594 78 QEVLERNLVALVLKDLTK-----QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLH----DFD----PDTRA 143 (542)
Q Consensus 78 ~~i~~~~~l~~Lv~~L~~-----~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~----~~~----~~~~~ 143 (542)
..+.+.|++..++..+.+ .....-...+.+|...+.-. .+++ +++.|+++.|+..+. ... +.+-+
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 344578999999998875 22344445555666656554 5555 888999999988874 333 55556
Q ss_pred HHHHHHHHhhcCChH----HHHHHHHcC--------ChHHHHHhccCC----CHhHHHHHHHHHHHHhcCCHHHHHHhhh
Q psy12594 144 NAALALGGLAKDNKH----FAERIVQCG--------ALPPLVQILASP----QLSLKHAAAFALDGIVKHSPELAESASD 207 (542)
Q Consensus 144 ~a~~~L~~l~~~~~~----~~~~i~~~g--------~i~~L~~ll~~~----~~~~~~~a~~~L~nl~~~~~~~~~~~~~ 207 (542)
..+.++..+...... ......... -+..|++.+.++ ++.+....+++|-+|+.++++..+.++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv- 268 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV- 268 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH-
Confidence 666655555432111 000101111 266677766654 488999999999999998888777766
Q ss_pred CCChHHHHHhhc--CC----CHHHHHHHHHHHHHHhcC----C--hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHH
Q psy12594 208 CDVIPLLIKALN--ND----EVNVKADAFLCLADIAKD----S--PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLL 274 (542)
Q Consensus 208 ~~~i~~L~~ll~--~~----~~~~~~~a~~~L~~l~~~----~--~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L 274 (542)
..+-..++ .. .++- ...+.+++.++.. . ...++.+.+.|++. .+..|...-+...
T Consensus 269 ----~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~------- 336 (802)
T PF13764_consen 269 ----EHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLK------- 336 (802)
T ss_pred ----HHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccc-------
Confidence 33444433 11 1111 1224445555432 1 34677888889888 8887766533330
Q ss_pred HHHhcCChHHHHHHHhcCCHHHHHHhhh
Q psy12594 275 RDMCKHNLRLANLVVLAGGLDGLLRLID 302 (542)
Q Consensus 275 ~~L~~~~~~~~~~~~~~~~i~~Lv~lL~ 302 (542)
+ ..++++.+ ......+|.++.+|.
T Consensus 337 -~--~~s~eWk~-~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 337 -N--TDSPEWKE-FLSRPSLPYILRLLR 360 (802)
T ss_pred -c--CCCHHHHH-HhcCCcHHHHHHHHH
Confidence 0 13444444 334455555555543
No 185
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.42 E-value=0.0084 Score=47.54 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=60.7
Q ss_pred CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
.++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..++.++.++ +++||.+|..|+..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE--DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 47888999997766778888999999999999998877777889999999999987 57999999999987764
No 186
>KOG2032|consensus
Probab=96.38 E-value=0.38 Score=47.61 Aligned_cols=289 Identities=14% Similarity=0.073 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHhCCchHH----HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcH
Q psy12594 11 DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDL----IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLV 86 (542)
Q Consensus 11 ~~~~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~----L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l 86 (542)
++|++-|..-...+.++...+... +.|.+.. +..-..+++..++..|+..|.+.++.. ++-.... ....+
T Consensus 228 s~~~~~ritd~Af~ael~~~~~l~----~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~-P~kv~th-~~~~l 301 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKRPKELD----KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGA-PDKVRTH-KTTQL 301 (533)
T ss_pred hhcccchHHHHHHHHHHhCccccc----ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccC-cHHHHHh-HHHHH
Confidence 344444555555555555433322 3344333 333334566788999999999999432 3332222 22345
Q ss_pred HHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-HHHHHH
Q psy12594 87 ALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-HFAERI 163 (542)
Q Consensus 87 ~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~i 163 (542)
..++.-|-+ .+.++..+++.+|..+........- ..-..+.-.+..+..+.++++|..+...++.++.-.. ..++.+
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~F 381 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFF 381 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhh
Confidence 556655554 5689999999998887643222111 2222345567788889999999999988888772111 112222
Q ss_pred H---HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHH--HHHHhc
Q psy12594 164 V---QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLC--LADIAK 238 (542)
Q Consensus 164 ~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~--L~~l~~ 238 (542)
. ..+ ...|+-.+.++++.+-.++ ......+..+- .++... +. +-+.+ +.+.. +-.+... ...+..
T Consensus 382 te~v~k~-~~~lllhl~d~~p~va~AC-r~~~~~c~p~l-~rke~~--~~---~q~~l-d~~~~-~~q~Fyn~~c~~L~~ 451 (533)
T KOG2032|consen 382 TEQVKKR-LAPLLLHLQDPNPYVARAC-RSELRTCYPNL-VRKELY--HL---FQESL-DTDMA-RFQAFYNQWCIQLNH 451 (533)
T ss_pred HHHHHhc-cccceeeeCCCChHHHHHH-HHHHHhcCchh-HHHHHH--HH---Hhhhh-HHhHH-HHHHHHHHHHHHHhh
Confidence 2 223 3345555677777665544 44444443111 122211 11 11111 11111 1111100 001111
Q ss_pred CChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHH-HHHHhcCCHHHHHHhhhcCCccchHHHHHHH
Q psy12594 239 DSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLA-NLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL 316 (542)
Q Consensus 239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 316 (542)
..++..- -... ...+++..-+.++..+...-.++..+..... ...........+-.+.+++-++++..|..++
T Consensus 452 i~~d~l~-----~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al 526 (533)
T KOG2032|consen 452 IHPDILM-----LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKAL 526 (533)
T ss_pred hCHHHHH-----HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHh
Confidence 1111100 0111 2333444456677766665555554433222 2222223455677778888899999998888
Q ss_pred hHhh
Q psy12594 317 GYMS 320 (542)
Q Consensus 317 ~~l~ 320 (542)
+-+.
T Consensus 527 ~~l~ 530 (533)
T KOG2032|consen 527 DLLS 530 (533)
T ss_pred hhHh
Confidence 7654
No 187
>KOG2032|consensus
Probab=96.33 E-value=0.25 Score=48.81 Aligned_cols=262 Identities=15% Similarity=0.054 Sum_probs=138.1
Q ss_pred cCcHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCCh
Q psy12594 83 RNLVALVLKDL----TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNK 157 (542)
Q Consensus 83 ~~~l~~Lv~~L----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~ 157 (542)
.|.+..++..+ ++++..++..|+..|++.+++.|+...-...-.+..++.-|-++ +.+|..++..+|..+...-
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~- 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA- 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-
Confidence 45555555544 45778999999999999998855544433344566666666555 4889999999888876311
Q ss_pred HHHHHHHHcCCh---HHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH----HhhhCCChHHHHHhhcCCCHHHHHHHH
Q psy12594 158 HFAERIVQCGAL---PPLVQILASPQLSLKHAAAFALDGIVKHSPELAE----SASDCDVIPLLIKALNNDEVNVKADAF 230 (542)
Q Consensus 158 ~~~~~i~~~g~i---~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~----~~~~~~~i~~L~~ll~~~~~~~~~~a~ 230 (542)
...-+..+.+ -.+..+..+.++++|.++...++.|+.-.....+ ..+ .+....|+-.+.++++.+- .||
T Consensus 332 --~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v-~k~~~~lllhl~d~~p~va-~AC 407 (533)
T KOG2032|consen 332 --SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV-KKRLAPLLLHLQDPNPYVA-RAC 407 (533)
T ss_pred --hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH-HhccccceeeeCCCChHHH-HHH
Confidence 1111222333 3466677888899999999888887753211111 112 1223344445566776654 455
Q ss_pred HHHHHHhcCChhhHHHHHhhchHHHHHhhcCCChhHHHH---HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc
Q psy12594 231 LCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKN---AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY 307 (542)
Q Consensus 231 ~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~~~~v~~~---a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 307 (542)
......|..+- .++... +.++ ..+ +.+.. +.. .-|| ..+....++....... ....++++.-+.
T Consensus 408 r~~~~~c~p~l-~rke~~--~~~q--~~l-d~~~~-~~q~Fyn~~c-~~L~~i~~d~l~~~~t-----~~~~~f~sswe~ 474 (533)
T KOG2032|consen 408 RSELRTCYPNL-VRKELY--HLFQ--ESL-DTDMA-RFQAFYNQWC-IQLNHIHPDILMLLLT-----EDQHIFSSSWEQ 474 (533)
T ss_pred HHHHHhcCchh-HHHHHH--HHHh--hhh-HHhHH-HHHHHHHHHH-HHHhhhCHHHHHHHHH-----hchhheecchHH
Confidence 55555554332 222111 1111 111 11111 111 1111 1233333443332221 223344444456
Q ss_pred chHHHHHHHhHhhcCChHHHHHHHh-hCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594 308 NSLPAIMALGYMSAQSEQIAEQIIE-LQGVGSLQTILQCPHKEQLQVAAAWTLGQIG 363 (542)
Q Consensus 308 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 363 (542)
++.++...-.+...+.......... ......+..+.+. +-++++..+..++..+.
T Consensus 475 vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~d-p~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 475 VREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRD-PRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccC-CCchhHHHHHHHhhhHh
Confidence 7777776666655443332222221 2233444455554 55688888888887764
No 188
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=96.33 E-value=0.16 Score=53.81 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=98.2
Q ss_pred chHH-HHHhhcCC----ChhHHHHHHHHHHHHhc----CChHHHHHHHhcCCHHHHHHhhhc----CCccchHHHHHHHh
Q psy12594 251 ATTL-AVEHLTYP----HGLVQKNAATLLRDMCK----HNLRLANLVVLAGGLDGLLRLIDC----NGGYNSLPAIMALG 317 (542)
Q Consensus 251 ~~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~----~~~~~~~~~~~~~~i~~Lv~lL~~----~~~~~~~~a~~~L~ 317 (542)
..+. +..++.++ .+.++..+.-+++.+.. +.+.... .+....++.+...|.. .+...+...+++||
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3455 66777654 45677777777776643 2221101 1112345555555543 44556777899999
Q ss_pred HhhcCChHHHHHHHhhCchHHHHHhhcC--CChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594 318 YMSAQSEQIAEQIIELQGVGSLQTILQC--PHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL 395 (542)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v 395 (542)
|+... ..++.+..++.. ..+..+|..|+++|..++...+.. +-+.++.++.+...+.++
T Consensus 472 N~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 98543 234444555542 123579999999999997656554 337778888887778899
Q ss_pred HHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHH
Q psy12594 396 KSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCA 435 (542)
Q Consensus 396 ~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~ 435 (542)
|..|..+|...--....+..+...+..+.+.+|...+...
T Consensus 533 RiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 533 RMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 9999988865422222344444544423445665555443
No 189
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.31 E-value=1.5 Score=47.46 Aligned_cols=238 Identities=13% Similarity=0.105 Sum_probs=147.7
Q ss_pred HHHhCCchHHHHhhhcCC-----ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc----cCC----HHHHH
Q psy12594 36 FLKDLNVVDLIVPLLADK-----VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT----KQN----KHYKK 102 (542)
Q Consensus 36 ~l~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~----~~~----~~~~~ 102 (542)
.+.++||+..++.++.+- ....-...+..|..++ +-+.+++.+.+.+.++.|++.+. ... +.+-.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~--Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC--KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH--hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 456799999999998752 2344455667777777 66999999999999999998775 333 56666
Q ss_pred HHHHHHHHHhcCChh--hh--h-HhhcC--------ChHHHHhhhcCC----CHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594 103 TALHMLTCVAQQDER--CA--G-LIEDK--------DLDSIISSLHDF----DPDTRANAALALGGLAKDNKHFAERIVQ 165 (542)
Q Consensus 103 ~a~~~L~~l~~~~~~--~~--~-~~~~g--------~v~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 165 (542)
..+.++..+...... .. . ..... -+..|++.+++. ++.+....+++|-.++.++++..+.+++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 666666665432211 11 1 11111 366777777654 4888899999999999988887666644
Q ss_pred cCChHHHHHhcc--CC-CHhHHHHHHHHHHHHhcCC------HHHHHHhhhCCChHHHHHhhcCC--------CHH----
Q psy12594 166 CGALPPLVQILA--SP-QLSLKHAAAFALDGIVKHS------PELAESASDCDVIPLLIKALNND--------EVN---- 224 (542)
Q Consensus 166 ~g~i~~L~~ll~--~~-~~~~~~~a~~~L~nl~~~~------~~~~~~~~~~~~i~~L~~ll~~~--------~~~---- 224 (542)
. +.+.+++=+ .. .++- ..-+.+++.++..- ...++.+++.|++...+..+... +++
T Consensus 270 ~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 270 H--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred H--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence 3 122222111 11 1111 22355666665432 46778899999999888777532 222
Q ss_pred ----HHHHHHHHHHHHhcCChhhHHHHHhhchHHHHHhhcCC--ChhHHHHHHHHHHHHhc
Q psy12594 225 ----VKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYP--HGLVQKNAATLLRDMCK 279 (542)
Q Consensus 225 ----~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~--~~~v~~~a~~~L~~L~~ 279 (542)
-.-.++..|.-|+......+.. ....++++++.|... +..+=.-|=.+|-.|..
T Consensus 347 l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 347 LSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred hcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2345778888889887655554 555667766666554 34444444444444444
No 190
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.25 E-value=0.12 Score=55.35 Aligned_cols=197 Identities=21% Similarity=0.242 Sum_probs=107.5
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc----CCHHHHHHHHHHHHHHhc-
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK----QNKHYKKTALHMLTCVAQ- 113 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~----~~~~~~~~a~~~L~~l~~- 113 (542)
...+..+..++.+..-. -..|...|..+. .. ...-. ..+..+..++.. .++.++..|+..++.+..
T Consensus 394 ~~av~~i~~~I~~~~~~-~~ea~~~l~~l~--~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~ 465 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLT-DDEAAQLLASLP--FHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHK 465 (618)
T ss_dssp HHHHHHHHHHHHTT-S--HHHHHHHHHHHH--HT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-HHHHHHHHHHHH--hhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCc
Confidence 45566777777764322 222445555555 22 11111 234445555542 557778777777776642
Q ss_pred ---CC------hhhhhHhhcCChHHHHhhhc----CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-
Q psy12594 114 ---QD------ERCAGLIEDKDLDSIISSLH----DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP- 179 (542)
Q Consensus 114 ---~~------~~~~~~~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~- 179 (542)
.. ......+....++.+...+. ..+.+-+..++.+|+|+.. + ..++.|..++...
T Consensus 466 ~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 466 YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKE 534 (618)
T ss_dssp HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS
T ss_pred eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcc
Confidence 21 01111233345666666665 4566788889999999974 1 2377788888776
Q ss_pred --CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-
Q psy12594 180 --QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL- 254 (542)
Q Consensus 180 --~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~- 254 (542)
+..+|..|+++|..++...++.. .+.+.+++.+. +.++|..|..+|.. ..|.. ..+.
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~ 596 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQR 596 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHH
T ss_pred ccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHH
Confidence 58899999999999987665322 25677777644 67888888766654 22211 2344
Q ss_pred HHHhhcCC-ChhHHHHHHHH
Q psy12594 255 AVEHLTYP-HGLVQKNAATL 273 (542)
Q Consensus 255 L~~lL~~~-~~~v~~~a~~~ 273 (542)
+...+... +..|...+...
T Consensus 597 i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 597 IAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHh
Confidence 55666544 56665555443
No 191
>KOG0414|consensus
Probab=96.25 E-value=0.073 Score=57.82 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=121.6
Q ss_pred ChHHHHHhccC----CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh
Q psy12594 168 ALPPLVQILAS----PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 168 ~i~~L~~ll~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
+.|.+++..+. .+|++|.+|.-+|+.+..-+.+.+..- +|.|+..+. ++++.+|.+++-+++.++-.-|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~-----l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESH-----LPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHH-----HHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 46777777754 359999999999999988777766554 488999998 77899999999999999877665
Q ss_pred hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
..+ ..-+ |...|.+.++.+|+.|.-.|.+|-..+- +.-.|.++.+..+|.+++..++.-|-.....|+.
T Consensus 995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 554 3456 8899999999999999999999975332 3335889999999999999988888777777765
Q ss_pred CChHHHHHHHhhCchHHHHHhhcCC
Q psy12594 322 QSEQIAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 322 ~~~~~~~~~~~~~~l~~L~~ll~~~ 346 (542)
... .++ +++|-++.-|..+
T Consensus 1065 k~n----~iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGN----TIY--NLLPDILSRLSNG 1083 (1251)
T ss_pred ccc----chh--hhchHHHHhhccC
Confidence 432 121 4666666666654
No 192
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.20 E-value=0.31 Score=46.79 Aligned_cols=190 Identities=19% Similarity=0.106 Sum_probs=116.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH--hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC--ChHHHH
Q psy12594 86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL--IEDKDLDSIISSLHDFDPDTRANAALALGGLAKD--NKHFAE 161 (542)
Q Consensus 86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~ 161 (542)
+...++.+.+.....|..++..+.++.........+ ....++..+.+.++.+..+-+..|+.++.-++-. ......
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 445566666677889999998888876443211111 1224677888888888776666777777766533 122234
Q ss_pred HHHHcCChHHHHHhccCCC--HhHHHHHHHHHHHHhc---CCHHHHHHhhhCCChHHHH--Hhhc----------CCCHH
Q psy12594 162 RIVQCGALPPLVQILASPQ--LSLKHAAAFALDGIVK---HSPELAESASDCDVIPLLI--KALN----------NDEVN 224 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~i~~L~--~ll~----------~~~~~ 224 (542)
.+.+ .+.|.|.+.+.+.. +..|..++.+|+-++. .+++...... ..++.+. ...+ .+++.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 4444 34788889888764 5566677777776544 2332222111 1122111 1111 12356
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 225 VKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 225 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
+...|+.+.+-|...-+...-.-.-...++ |..+|.+++.+||..|..+|.-|.
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888888777777765543211122245688 999999999999999999988775
No 193
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.14 E-value=0.12 Score=49.62 Aligned_cols=169 Identities=19% Similarity=0.193 Sum_probs=111.6
Q ss_pred CchHHHH-hhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhc-CChh
Q psy12594 41 NVVDLIV-PLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQ-QDER 117 (542)
Q Consensus 41 g~i~~L~-~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~ 117 (542)
+.+..|+ +.+++.++.+|..|+++|+-.+ -- .+.. ...++.+...+..++..++..|+.++..+.. +...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~--Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCC--LLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 4454444 7789999999999999999998 43 2221 2246667777877899999999999999653 2222
Q ss_pred hhh-Hh-------hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC----CCHhHHH
Q psy12594 118 CAG-LI-------EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS----PQLSLKH 185 (542)
Q Consensus 118 ~~~-~~-------~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----~~~~~~~ 185 (542)
... .. ....+..+.+.+.+.+++++..++..++.|...+.-.. ...++..|+-+.-+ ++..+|.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 211 11 23577888899999999999999999999874222111 01223334333333 2367777
Q ss_pred HHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC
Q psy12594 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221 (542)
Q Consensus 186 ~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~ 221 (542)
.-...+-..+..+++.. ..+...+++.+..+....
T Consensus 175 ~L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCc
Confidence 77777888888666554 444466777777766643
No 194
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.00 E-value=0.32 Score=48.00 Aligned_cols=239 Identities=14% Similarity=0.082 Sum_probs=124.4
Q ss_pred cHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594 85 LVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAER 162 (542)
Q Consensus 85 ~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (542)
-+..+++-+.+ ....+|..++--|+.-+......+.+..+|.+..+++.+.+. +..+...+..++..+...+......
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 45666666663 446778888777777776554444499999999999999543 3324444444444444333333444
Q ss_pred HHHcCChHHHHHhccCC-----CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---------CCCHHHHHH
Q psy12594 163 IVQCGALPPLVQILASP-----QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN---------NDEVNVKAD 228 (542)
Q Consensus 163 i~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~ 228 (542)
+.+.+....+++++.-. .......-..-+..... ..+..+...+. .....-+..
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~------------~~~~~~~~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQ------------KSRSLCKELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHH------------HHHHHHHHHHhccccccccCCcccccccH
Confidence 45556667767777711 00000000001111111 01111111110 111122233
Q ss_pred HHHHHHHHh--------------cCChhhHHHHHhhchHH-HHHhhcC----C------------ChhHHHHHHHHHHHH
Q psy12594 229 AFLCLADIA--------------KDSPSLASTIADGATTL-AVEHLTY----P------------HGLVQKNAATLLRDM 277 (542)
Q Consensus 229 a~~~L~~l~--------------~~~~~~~~~~~~~~~i~-L~~lL~~----~------------~~~v~~~a~~~L~~L 277 (542)
+..++-.++ ...+.+++.+...|++. ++..+.+ . +......++.+|-+.
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 333333332 12223556677778888 8888752 1 112455677777777
Q ss_pred hcCChHHHHHHHhc--CCHHHHHH-hhh---cCCccchHHHHHHHhHhhcCChHHHHHHHhhCc
Q psy12594 278 CKHNLRLANLVVLA--GGLDGLLR-LID---CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQG 335 (542)
Q Consensus 278 ~~~~~~~~~~~~~~--~~i~~Lv~-lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 335 (542)
+.....+...+... +.++.+.. ++. ...+.....+++.+.|+..+++..+..+...++
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l 313 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL 313 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence 76666555444432 23333222 222 223345678899999999888777766665543
No 195
>KOG2956|consensus
Probab=95.95 E-value=0.45 Score=46.80 Aligned_cols=182 Identities=14% Similarity=0.041 Sum_probs=114.4
Q ss_pred HHHHhhcc-CCHHHHHHHHHHHHHH-hcCChhhhhHhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 88 LVLKDLTK-QNKHYKKTALHMLTCV-AQQDERCAGLIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIV 164 (542)
Q Consensus 88 ~Lv~~L~~-~~~~~~~~a~~~L~~l-~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 164 (542)
.++.-++. +..+-+..|+.-|..+ +.++.....-.-..++..+++.|.+ .+...+..|+++|..++...+.--..-.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 33333433 3456667777655554 4444333331222356678888887 6788999999999999975543211111
Q ss_pred HcCChHHHHHhccCCCHhH-HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 165 QCGALPPLVQILASPQLSL-KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL 243 (542)
Q Consensus 165 ~~g~i~~L~~ll~~~~~~~-~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 243 (542)
+ -++..+++.-.+.+.++ +.++-.++.-++.+.|..+ |..+..++...|.+.-..++..+..+++.-. .
T Consensus 370 E-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~-~ 439 (516)
T KOG2956|consen 370 E-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLS-A 439 (516)
T ss_pred H-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcC-H
Confidence 1 23556666666665544 4444456777788777433 3445556666777777777778888877642 1
Q ss_pred HHH-HHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 244 AST-IADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 244 ~~~-~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
-.. ..-..+.| ++.-..+.+..||..++.||..+..
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 111 12257788 8888888899999999999998863
No 196
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.90 E-value=0.14 Score=54.90 Aligned_cols=166 Identities=15% Similarity=0.135 Sum_probs=95.4
Q ss_pred hHH-HHHhhcCC----ChhHHHHHHHHHHHHhcC---Ch------HHHHHHHhcCCHHHHHHhhh----cCCccchHHHH
Q psy12594 252 TTL-AVEHLTYP----HGLVQKNAATLLRDMCKH---NL------RLANLVVLAGGLDGLLRLID----CNGGYNSLPAI 313 (542)
Q Consensus 252 ~i~-L~~lL~~~----~~~v~~~a~~~L~~L~~~---~~------~~~~~~~~~~~i~~Lv~lL~----~~~~~~~~~a~ 313 (542)
.+. +..+++.+ ++.++..|+-+++.+... .. ...........++.+...+. ..+...+..++
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 444 55555543 466777777776666421 11 00011112345666666655 34556788899
Q ss_pred HHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC--ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC
Q psy12594 314 MALGYMSAQSEQIAEQIIELQGVGSLQTILQCP--HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV 391 (542)
Q Consensus 314 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 391 (542)
++|||+... ..++.|..++... ....+|..|+++|..+....++.. .+.++.++.+...
T Consensus 512 kaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e 572 (618)
T PF01347_consen 512 KALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS
T ss_pred HHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCC
Confidence 999998532 4667777777665 236899999999999977777543 3778888888777
Q ss_pred ChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHH
Q psy12594 392 SDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAF 436 (542)
Q Consensus 392 ~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l 436 (542)
+.++|..|...|...--....+..+...+..+.+.+|...+-..|
T Consensus 573 ~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 573 DPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp -HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 788999998877653211122444555554234456665555443
No 197
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.87 E-value=0.25 Score=48.70 Aligned_cols=254 Identities=20% Similarity=0.178 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC-CCh-HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD-KVP-SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL 93 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s-~~~-~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L 93 (542)
.|...+-.|+.-+.++..+..|+..|....+++.+.+ .+. ..-..++.++.-++ .+......+.+.+....++.++
T Consensus 38 ~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~--~d~~~~~l~~~~~~~~ll~~Ll 115 (361)
T PF07814_consen 38 VRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLS--RDGLNMHLLLDRDSLRLLLKLL 115 (361)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHc--cCCcchhhhhchhHHHHHHHHh
Confidence 4666777788888899999999999999999999844 333 33333444444444 3322223333444455556666
Q ss_pred cc--C---CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhh------c---CCCHHHHHHHHHHHHHh-------
Q psy12594 94 TK--Q---NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL------H---DFDPDTRANAALALGGL------- 152 (542)
Q Consensus 94 ~~--~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL------~---~~~~~~~~~a~~~L~~l------- 152 (542)
.- . ...........+.+... +.+..+...+ . .....-+..|..++..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~lsk~~~-----------~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~~ 184 (361)
T PF07814_consen 116 KVDKSLDVPSDSDSSRKKNLSKVQQ-----------KSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLREA 184 (361)
T ss_pred ccccccccccchhhhhhhhhhHHHH-----------HHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhhc
Confidence 51 0 00000000000100000 0011111111 0 11112223333333333
Q ss_pred -------hcCChHHHHHHHHcCChHHHHHhccC----C-------C-----HhHHHHHHHHHHHHhcCCHHHHHHhhhC-
Q psy12594 153 -------AKDNKHFAERIVQCGALPPLVQILAS----P-------Q-----LSLKHAAAFALDGIVKHSPELAESASDC- 208 (542)
Q Consensus 153 -------~~~~~~~~~~i~~~g~i~~L~~ll~~----~-------~-----~~~~~~a~~~L~nl~~~~~~~~~~~~~~- 208 (542)
....+.+++.+...|++..++..+.+ . + ......++++|.|.+..+.++.......
T Consensus 185 ~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~ 264 (361)
T PF07814_consen 185 GDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSHR 264 (361)
T ss_pred ccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHhc
Confidence 12334567778888889999888752 1 1 2345678888888887666666555432
Q ss_pred -CChH-HHHHhhc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-H-------HHhhcCC-------ChhHHH
Q psy12594 209 -DVIP-LLIKALN---NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-A-------VEHLTYP-------HGLVQK 268 (542)
Q Consensus 209 -~~i~-~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L-------~~lL~~~-------~~~v~~ 268 (542)
+.++ .+..++. .....+...+++.+.|++.++++..+.+...++.. + ..++..+ .-+...
T Consensus 265 ~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~I 344 (361)
T PF07814_consen 265 SSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILI 344 (361)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccchHHH
Confidence 2222 2222222 23445577899999999998866554444432222 1 1112211 245666
Q ss_pred HHHHHHHHHhcCCh
Q psy12594 269 NAATLLRDMCKHNL 282 (542)
Q Consensus 269 ~a~~~L~~L~~~~~ 282 (542)
-++++|.||+.+++
T Consensus 345 L~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 345 LALGLLINLVEHSE 358 (361)
T ss_pred HHHHhHHHheeeCc
Confidence 78888888887654
No 198
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.86 E-value=0.094 Score=44.81 Aligned_cols=145 Identities=15% Similarity=0.113 Sum_probs=99.2
Q ss_pred hHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy12594 211 IPLLIKALN--NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANL 287 (542)
Q Consensus 211 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 287 (542)
++.++..+. ...+++|..+.-++..+- ...++ -....+-+ +-.++...+.+-...++.++..+-...|+....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~-~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAARE-EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHH-HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 344444444 356789999988888883 11222 22233444 556666666667888999999999888887766
Q ss_pred HH-hcCCHHHHHHhhh--cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhh-HHHHHHHHHHH
Q psy12594 288 VV-LAGGLDGLLRLID--CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQ-LQVAAAWTLGQ 361 (542)
Q Consensus 288 ~~-~~~~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~~ 361 (542)
+. ..|.++.+..+.. ..+..++..++.+|..- .. .+.+...+...+++.|..+++.++++. +|..|+-.|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA-c~-d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAA-CI-DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH-TT-SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH-Hc-cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 65 6688889999998 67777888888888643 33 344555566689999999997666555 78777766654
No 199
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.85 E-value=0.017 Score=45.88 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=60.8
Q ss_pred hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 250 GATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 250 ~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
..++. |+.+|..+ |+.+..-||.-|+.++++.|.....+.+.|+-+.+..++.++|++++..|+.++.-+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45777 99999555 88899999999999999999998878788999999999999999999999999887643
No 200
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.82 E-value=0.011 Score=34.66 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=25.9
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~ 197 (542)
+|.++++++++++++|..|+.+|+.++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999863
No 201
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.78 E-value=1.2 Score=40.97 Aligned_cols=201 Identities=13% Similarity=0.040 Sum_probs=123.7
Q ss_pred hHHHHH-hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594 169 LPPLVQ-ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI 247 (542)
Q Consensus 169 i~~L~~-ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 247 (542)
++.|+. +-+..++.++...+.+|..++.++..... -++..+..+...++.+.+..+...+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 344444 44556799999999999999996522222 234677777777777777778888888877664222
Q ss_pred HhhchHH-HHHh-----h---cCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhh-hcCCccchHHHHHH
Q psy12594 248 ADGATTL-AVEH-----L---TYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLI-DCNGGYNSLPAIMA 315 (542)
Q Consensus 248 ~~~~~i~-L~~l-----L---~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~~~~~a~~~ 315 (542)
+.+. ++.. . .+. ..+.......++..+|...|+.. ...++.+..++ ++.++..+..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2222 2222 1 111 34455555678888998887732 34567888888 67777788899999
Q ss_pred HhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHhcCC
Q psy12594 316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKITQTC 390 (542)
Q Consensus 316 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~~~~ 390 (542)
|..++...--.. ...+..+..-+..+..+.+....+..+..+..+.- ..........++..+.+...+.+
T Consensus 146 l~~Lc~~~vvd~-----~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 146 LAPLCEAEVVDF-----YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHhhccH-----HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 999984321111 13555666666555555666655555554433322 22333455567777777777653
No 202
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.71 E-value=0.066 Score=54.77 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=133.0
Q ss_pred HHHHHHhhhc----CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH
Q psy12594 294 LDGLLRLIDC----NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN 369 (542)
Q Consensus 294 i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 369 (542)
.|.+.+...+ .++.++.+|..+|..+..-+.+.+. .-+|.|+..+..++.|.+|.+|.-.++.++......
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3444444444 5677888888888877665444443 568899999997788899999999999887654332
Q ss_pred HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-----CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCCh
Q psy12594 370 VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-----CENPKELEQMLLGNVSEELLASILCAFAKILPCDP 444 (542)
Q Consensus 370 ~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-----~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~ 444 (542)
... .-..|.+-|.+.+ .+||+.|..++.+++-. -|.++.+..+|. +.|..+-..+--.+..+..++.
T Consensus 969 ~de-----~t~yLyrrL~De~--~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~-deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 969 ADE-----HTHYLYRRLGDED--ADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLT-DEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred hHH-----HHHHHHHHhcchh--hHHHHHHHHHHHHHHHccceeeccchhhhHhhcc-CCcchHHHHHHHHHHHHHhccc
Confidence 222 2345667777764 58999999999999743 366888888998 8887777666666666655553
Q ss_pred hhhhHHHHhcchHHhhhcC-----CCCcHHHHHHHHhccCccchhcccCccchHHHHHHHhhcCCCCc
Q psy12594 445 VARRSFVTSHCLRKVQEIE-----PTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQFNPQKS 507 (542)
Q Consensus 445 ~~~~~~~~~g~~~~l~~l~-----~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 507 (542)
. .-.|.++....+. .....++.+..+..+.+.+.+. .+..+.++-++.+-+.+.|
T Consensus 1041 t-----~yn~fidifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~---kql~E~L~~rl~rc~tq~q 1100 (1128)
T COG5098 1041 T-----MYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQ---KQLKESLFLRLLRCNTQSQ 1100 (1128)
T ss_pred c-----hhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHH
Confidence 3 2345666666665 2333566777777777776665 4467778888877755533
No 203
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.65 E-value=0.39 Score=51.01 Aligned_cols=132 Identities=18% Similarity=0.247 Sum_probs=80.1
Q ss_pred cHHHHHHhhcc----CCHHHHHHHHHHHHHHhc----CChhhhhHhhcCChHHHHhhhc----CCCHHHHHHHHHHHHHh
Q psy12594 85 LVALVLKDLTK----QNKHYKKTALHMLTCVAQ----QDERCAGLIEDKDLDSIISSLH----DFDPDTRANAALALGGL 152 (542)
Q Consensus 85 ~l~~Lv~~L~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~v~~Lv~lL~----~~~~~~~~~a~~~L~~l 152 (542)
.+..+..++.+ ..+.++..++..++.+.. ..+.....+....++.+.+.|. ..+.+.+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 44556666654 346677777777666542 2221111112235555555553 34566677788889988
Q ss_pred hcCChHHHHHHHHcCChHHHHHhcc-C--CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHH
Q psy12594 153 AKDNKHFAERIVQCGALPPLVQILA-S--PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKA 227 (542)
Q Consensus 153 ~~~~~~~~~~i~~~g~i~~L~~ll~-~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~ 227 (542)
.... .++.+..++. + .+..+|..|+++|..++...++ .+-+.+.+++.+. ++++|.
T Consensus 474 g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHH
Confidence 7521 2455555555 2 2478999999999999865553 2335667777643 778888
Q ss_pred HHHHHHHH
Q psy12594 228 DAFLCLAD 235 (542)
Q Consensus 228 ~a~~~L~~ 235 (542)
.|+.+|..
T Consensus 535 aA~~~lm~ 542 (574)
T smart00638 535 AAVLVLME 542 (574)
T ss_pred HHHHHHHh
Confidence 88777654
No 204
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.71 Score=46.52 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=90.3
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh-hhcCCccchHHHHHHHhHhhcCChHHHHHHHhh
Q psy12594 255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL-IDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL 333 (542)
Q Consensus 255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 333 (542)
+-.++.+.|+-+|......+..--.+.. +.+++..++++ ..+.++.++.+|+.+||-+|..++
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------- 584 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------- 584 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------
Confidence 3355556677777776655442221111 23566677777 677889999999999998887655
Q ss_pred CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC 410 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~ 410 (542)
..+...+++|..+.+..+|...+.+|+-.|++...+. ++..|-.++.+. .+-||..|+-+++-++.++
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~--~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDT--NDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCc--HHHHHHHHHHHHHHHHhhc
Confidence 3555667788777778999999999999988765422 334455566655 4569999999988876543
No 205
>KOG3665|consensus
Probab=95.57 E-value=2.2 Score=45.95 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=98.6
Q ss_pred HHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCC-hHHHHHHHhcCCCCh
Q psy12594 315 ALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENV-LSTLLSKITQTCVSD 393 (542)
Q Consensus 315 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-l~~L~~ll~~~~~~~ 393 (542)
++.++...+++.+..+++.++...+...+..-...+++..+...++|++...+........... ...+-..+...+ +.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~-~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWD-SI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-hh
Confidence 7888899999999999999999999999987656789999999999997554222111111100 011112222111 11
Q ss_pred HHHHHHHHHHHHHHhhC---------------------------------CCchh-hHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594 394 NLKSKCKNALNILIPKC---------------------------------ENPKE-LEQMLLGNVSEELLASILCAFAKI 439 (542)
Q Consensus 394 ~v~~~a~~aL~nl~~~~---------------------------------~~i~~-L~~lL~~~~~~~v~~~~l~~l~~l 439 (542)
+.-..|+..|..++.+. ..+.+ +..++..+..+.....+++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 33344444444443210 11233 555665244668889999999999
Q ss_pred CCCChhhhhHHHHhcchHHhhhcC
Q psy12594 440 LPCDPVARRSFVTSHCLRKVQEIE 463 (542)
Q Consensus 440 l~~~~~~~~~~~~~g~~~~l~~l~ 463 (542)
+...+++.+.+.+.|++..+.++-
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 653 LEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred HHcChhhhhhhHhccchhhhhhcc
Confidence 999988888899999999999886
No 206
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.46 E-value=0.18 Score=46.20 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594 98 KHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI 175 (542)
Q Consensus 98 ~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 175 (542)
......|+.+|..++--.+..+. +.....++.++++|.. ..+.++..++.+|..+..+++.+.+.+-+.+++..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34566688899998877777777 8889999999999954 468999999999999999999999999999999999999
Q ss_pred ccCCC--HhHHHHHHHHHHHHhc
Q psy12594 176 LASPQ--LSLKHAAAFALDGIVK 196 (542)
Q Consensus 176 l~~~~--~~~~~~a~~~L~nl~~ 196 (542)
+++.. .+++..++..|.-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 99864 6777777776665443
No 207
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.44 E-value=0.03 Score=32.82 Aligned_cols=29 Identities=34% Similarity=0.638 Sum_probs=25.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKD 239 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 239 (542)
+|.+.++++++++++|..|+++|+.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999864
No 208
>KOG1832|consensus
Probab=95.37 E-value=2 Score=45.81 Aligned_cols=375 Identities=14% Similarity=0.083 Sum_probs=184.1
Q ss_pred HHHHHHHHhcCCCCchHHHHhCCchHHHHhh---hcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc
Q psy12594 19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPL---LADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95 (542)
Q Consensus 19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~l---L~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~ 95 (542)
..+|+|--+-...+....+.+.|+-..++-+ -+-+|.-....+++.|+.|+ -+......+++.+++..|+..=+-
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~--~h~kfa~~fv~~~gi~kll~vpr~ 405 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALA--AHRKFAAMFVERRGILKLLAVPRV 405 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHH--HhhHHHHHHHHhhhhHHHhcCCCc
Confidence 3566666666666666666666654333322 23345556677888888898 888888889999998887765442
Q ss_pred CCH-HHHHHHHHHHHHHhcCChhh---hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q psy12594 96 QNK-HYKKTALHMLTCVAQQDERC---AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP 171 (542)
Q Consensus 96 ~~~-~~~~~a~~~L~~l~~~~~~~---~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~ 171 (542)
... .-...+++.|+.+-..-+.. ..++-+.++..-+.+|......-+..+...+. ++.......+.+-....+..
T Consensus 406 s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~-~~f~frail~~fd~~d~l~~ 484 (1516)
T KOG1832|consen 406 SETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFA-AAFVFRAILDAFDAQDSLQK 484 (1516)
T ss_pred hhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHH-HHHHHHHHHHHHhhhhHHHH
Confidence 221 11223333333321100000 01223345666667776554333332222111 11111122223333344555
Q ss_pred HHHhccC--------CC-----------HhHHHHHHHHHHHHhcC-----CHHHHHHhhhCCChHHHHHhhcCC------
Q psy12594 172 LVQILAS--------PQ-----------LSLKHAAAFALDGIVKH-----SPELAESASDCDVIPLLIKALNND------ 221 (542)
Q Consensus 172 L~~ll~~--------~~-----------~~~~~~a~~~L~nl~~~-----~~~~~~~~~~~~~i~~L~~ll~~~------ 221 (542)
|+.++++ .+ ...-...+.+|+.--.. -...+..-+..+..+..++-+...
T Consensus 485 l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~ 564 (1516)
T KOG1832|consen 485 LLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDI 564 (1516)
T ss_pred HHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchh
Confidence 6655542 11 12233445555443221 111233333445555544433322
Q ss_pred CHHHHHHHHHHHHHHhcCChh-------hHHHHHhhchHH-HHHhhcCC--------ChhHHHHHHHHHHHHhcCChHHH
Q psy12594 222 EVNVKADAFLCLADIAKDSPS-------LASTIADGATTL-AVEHLTYP--------HGLVQKNAATLLRDMCKHNLRLA 285 (542)
Q Consensus 222 ~~~~~~~a~~~L~~l~~~~~~-------~~~~~~~~~~i~-L~~lL~~~--------~~~v~~~a~~~L~~L~~~~~~~~ 285 (542)
..+..+..+|-+-.+-+..+. ..+.+...+.+. ++.+..-+ ..+....|+..|.-+..- |...
T Consensus 565 s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq 643 (1516)
T KOG1832|consen 565 SNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQ 643 (1516)
T ss_pred hhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHH
Confidence 223455566665555544432 223444455555 66555433 245666777777666543 3333
Q ss_pred HHHHh--------cCCHHHHHHhhhc----CCccchHHHHHHHhHhhcCChHHHHHHHh----hCchHHHHHhhcCCChh
Q psy12594 286 NLVVL--------AGGLDGLLRLIDC----NGGYNSLPAIMALGYMSAQSEQIAEQIIE----LQGVGSLQTILQCPHKE 349 (542)
Q Consensus 286 ~~~~~--------~~~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~l~~L~~ll~~~~~~ 349 (542)
..+.. ..++..++..-.. .+++++.+|+.+|-|++...+......+. ..+-+. ..+..++..
T Consensus 644 ~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r--~~l~~~~ks 721 (1516)
T KOG1832|consen 644 KALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR--IFLGAGTKS 721 (1516)
T ss_pred HHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc--ccccCCCch
Confidence 22321 1244444433322 36779999999999998876644332221 111000 011111111
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhh
Q psy12594 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV---SDNLKSKCKNALNILIPK 409 (542)
Q Consensus 350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~---~~~v~~~a~~aL~nl~~~ 409 (542)
...+..+. .....+...++|..|+++|+...+ .+.+|.-|+.+|.-|.+.
T Consensus 722 ~~le~~l~----------~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 722 AKLEQVLR----------QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred HHHHHHHH----------HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC
Confidence 11111111 222334456899999999985433 245899999999888654
No 209
>KOG2999|consensus
Probab=95.35 E-value=0.9 Score=45.62 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=117.4
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhH
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE----VNVKADAFLCLADIAKDSPSLA 244 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~ 244 (542)
...+.+.+.+++..-+..+...|..++. ++.....++...++..|..++.+.+ .++...++.++..+-.+.....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4456777888887778889999999988 7889999999999999999999764 4677888888888877654223
Q ss_pred HHHHhhchHHHHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594 245 STIADGATTLAVEHLTYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 245 ~~~~~~~~i~L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 322 (542)
+.+-...+.....+.... +..+...|+..|-++...++...+.+.+.--+..|+..+...+..++..|+..+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 333223333344444333 677888999999999988887777788888899999999999999888888777776543
No 210
>KOG1243|consensus
Probab=95.18 E-value=0.47 Score=49.13 Aligned_cols=184 Identities=12% Similarity=0.099 Sum_probs=128.8
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~ 201 (542)
...+++|.+++++...|..+|..-+.-+-... +...+.+++..++|.+...+.+.++.+|+.++.++..|+.- .
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L 400 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---L 400 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---h
Confidence 44578999999999999999876655444443 34456777888899999999999999999999999888762 2
Q ss_pred HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
.........+..|.++-.+.+..+|....-+|+.++.+.... . ..+++. ...-++++-...|..+.+.++....
T Consensus 401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---V-RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh---h-hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 222333444566666666677889998888888887663211 1 223333 5555666666777788877776664
Q ss_pred CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594 280 HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318 (542)
Q Consensus 280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 318 (542)
.-+.. -+...++|.++.+.-+++..++..|-.++..
T Consensus 477 ~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 477 YFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccchh---hhhhhccccccccccCcccchhhHHHHHHHH
Confidence 43322 1235778888888888888888777766543
No 211
>KOG2956|consensus
Probab=95.05 E-value=1.5 Score=43.36 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=109.2
Q ss_pred ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHh
Q psy12594 54 VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIIS 132 (542)
Q Consensus 54 ~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~ 132 (542)
..+-+..|+.-|..+........+++.. ..++..+++.|++ .+...+..|+++|..++...+..-.=-..-++..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 4456667777566665222234444332 2356677888887 7889999999999999976543322111124556666
Q ss_pred hhcCCCHHHHHHHHH-HHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCC
Q psy12594 133 SLHDFDPDTRANAAL-ALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESASDCDV 210 (542)
Q Consensus 133 lL~~~~~~~~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~ 210 (542)
.-.+.++++...|.. |+.-++...|.. .|..+..++...+...-..++..+..++..- .+.-..++ ..+
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~di 449 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDI 449 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhh
Confidence 666666655555554 445555555442 1334445555555555556666777777632 22222333 577
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAK 238 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 238 (542)
.|.+++-..+.+..+|..++.+|..+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 8999999999999999999999988754
No 212
>KOG2025|consensus
Probab=95.03 E-value=1.7 Score=45.24 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh
Q psy12594 224 NVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID 302 (542)
Q Consensus 224 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~ 302 (542)
.+.+-++..+..+-..+. -..++ .+.+. ++....+++..||..++..|..+.....+..+.+. .+....+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~--e~DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDK--EEDLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCc--hhhHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHh
Confidence 455555555555543332 11122 25556 77777788999999999999999875444433333 366777888888
Q ss_pred cCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHH
Q psy12594 303 CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLG 360 (542)
Q Consensus 303 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~ 360 (542)
+..+.+|..|+.+|..+-....+ -+..+...+..+++..+.++||.+|+..+.
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPKD-----EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 89999999999999988532111 023567788899998888899988775443
No 213
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.99 E-value=3.7 Score=42.14 Aligned_cols=91 Identities=12% Similarity=0.072 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC------ChhHHHHHHHHHHHHhcCC-hHHHHHHHhcC--C
Q psy12594 224 NVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP------HGLVQKNAATLLRDMCKHN-LRLANLVVLAG--G 293 (542)
Q Consensus 224 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~------~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~--~ 293 (542)
++...+-.++.||++... .. ..+. |..+|.++ +..+.+.|+..+..+..+. ......+--.. +
T Consensus 230 ~l~~~~w~~m~nL~~S~~-g~------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHL-GH------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCcc-HH------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 667778888888887642 11 3455 77777322 4567778888888776554 22222222223 6
Q ss_pred HHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 294 LDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 294 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
++.+...++..++.+-...+..+.++..
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 7788888888888877777777777653
No 214
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.97 E-value=3.9 Score=41.69 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=77.9
Q ss_pred cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC--ChHHH
Q psy12594 83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD--NKHFA 160 (542)
Q Consensus 83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~ 160 (542)
.|.+..+++.+.+.+..+|..++.+|+.+...-.++......|.+..|..-+-+..+.+|.+|+.+|..+-.. ++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen- 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN- 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-
Confidence 3567778888888999999999999999987766666666668888888888788899999999999988743 3332
Q ss_pred HHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhc
Q psy12594 161 ERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~ 196 (542)
..+..|+.+++. |+.++|+.| |.||.-
T Consensus 169 ------~~~n~l~~~vqnDPS~EVRr~a---llni~v 196 (885)
T COG5218 169 ------RIVNLLKDIVQNDPSDEVRRLA---LLNISV 196 (885)
T ss_pred ------HHHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence 123456666765 457888876 455544
No 215
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.95 E-value=0.77 Score=47.42 Aligned_cols=141 Identities=17% Similarity=0.129 Sum_probs=103.6
Q ss_pred HHHHHhccC----CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhH
Q psy12594 170 PPLVQILAS----PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLA 244 (542)
Q Consensus 170 ~~L~~ll~~----~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~ 244 (542)
|.+.....+ .+++++.+|..+|..+..-+.+.+.. -+|.|+..+. .++|.+|.+++-.++.+.-.-....
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~ 969 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA 969 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence 444444444 46899999999998887655555544 3588998888 7789999999998888865443333
Q ss_pred HHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC
Q psy12594 245 STIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS 323 (542)
Q Consensus 245 ~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 323 (542)
+ ..-. |..-|.+.+..|++.|..++.+|.-...- .-.|-.+.+..+|.+++..+...|-..+..++..+
T Consensus 970 d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 970 D-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred H-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 3 3345 78888888999999999999888643322 12477888899999999998888888888887654
Q ss_pred hH
Q psy12594 324 EQ 325 (542)
Q Consensus 324 ~~ 325 (542)
..
T Consensus 1040 Nt 1041 (1128)
T COG5098 1040 NT 1041 (1128)
T ss_pred cc
Confidence 43
No 216
>KOG2025|consensus
Probab=94.84 E-value=2.1 Score=44.54 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=75.6
Q ss_pred CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy12594 167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246 (542)
Q Consensus 167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 246 (542)
|.+..+++...+++..+|..++..|..+.....+.-+.++ .+....+..-+.+..+.+|..|+.+|+.+-....+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 4466777777888899999999999998874443333333 566778888888899999999999999998543211
Q ss_pred HHhhchHH-HHHhhcCC-ChhHHHHHHHHH
Q psy12594 247 IADGATTL-AVEHLTYP-HGLVQKNAATLL 274 (542)
Q Consensus 247 ~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L 274 (542)
+..+.. +..+++++ +++||+.+...+
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 124566 77777766 899999887654
No 217
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.58 E-value=2.7 Score=42.73 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=73.0
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
+|.+..++..+.+.|..+|..++..|..+. ..-.-.+.....+.+..|.+-+-+..+.+|..|+.+|+.+-....+-.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~--d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLS--DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 456667777778899999999999999998 552222334456677777777777889999999999999864321111
Q ss_pred hHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCC
Q psy12594 120 GLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDN 156 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~ 156 (542)
. .....|+..++ ++..++|..| |.|+..++
T Consensus 168 n----~~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 168 N----RIVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred H----HHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 1 12345556665 4557888776 45665433
No 218
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.48 E-value=0.38 Score=42.41 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=82.6
Q ss_pred cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC----------------CChHHHHHhhcC------CCHHHHHHHHHHHH
Q psy12594 177 ASPQLSLKHAAAFALDGIVKHSPELAESASDC----------------DVIPLLIKALNN------DEVNVKADAFLCLA 234 (542)
Q Consensus 177 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~----------------~~i~~L~~ll~~------~~~~~~~~a~~~L~ 234 (542)
.+++......++..|.|++.. ...+..+++. ..+..|+..+.. ....-....+.+|.
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 345556777888999999984 4444433321 235566666654 23445677888999
Q ss_pred HHhcCChhhHHHHHhh--ch--HH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh--cCCHHHHHHhhh
Q psy12594 235 DIAKDSPSLASTIADG--AT--TL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVL--AGGLDGLLRLID 302 (542)
Q Consensus 235 ~l~~~~~~~~~~~~~~--~~--i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~i~~Lv~lL~ 302 (542)
|+++.. ..++.+.+. +. +. |+.++.+.+..-|..++++++|+|-........+-+ .+++|.|+--|.
T Consensus 84 NlS~~~-~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 84 NLSQLP-EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhcCCH-HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999885 578877763 33 67 888888888888889999999999766555443322 244555554444
No 219
>KOG2999|consensus
Probab=94.47 E-value=0.89 Score=45.66 Aligned_cols=155 Identities=18% Similarity=0.266 Sum_probs=113.8
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC----HhHHHHHHHHHHHHhcCCHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ----LSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nl~~~~~~~ 201 (542)
....+.+.+.+++...+..+..-|..++. ++.+.+.++...++..|.+++.+.. .++...++.++..+..++- .
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 34567788888888888889888998887 6777889999988999999998865 4566667777777666442 2
Q ss_pred HHHhhhCCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 202 AESASDCDVIPLLIKALN--NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 202 ~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
....+...++.....+.. ..+..+...|+..|-++...+......+.+.--+. |+..++..+..+...|...+..+.
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 222222333333333332 22556778888888888888776778888888888 999999999999999888888876
Q ss_pred cCCh
Q psy12594 279 KHNL 282 (542)
Q Consensus 279 ~~~~ 282 (542)
...+
T Consensus 242 ~~a~ 245 (713)
T KOG2999|consen 242 RKAP 245 (713)
T ss_pred hhCC
Confidence 6544
No 220
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=6.1 Score=41.56 Aligned_cols=275 Identities=13% Similarity=0.040 Sum_probs=154.2
Q ss_pred CChHHHHhhhcCC--------CHHHHHHHHHHHHHhhc--CChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594 125 KDLDSIISSLHDF--------DPDTRANAALALGGLAK--DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194 (542)
Q Consensus 125 g~v~~Lv~lL~~~--------~~~~~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl 194 (542)
|.++.+...|... ++.-.+.|++.++++.. ..+.....+.+.=+++.++-.++++.--++..|+..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 6777788777321 24445667777777764 3333344455555677888888888888999999999988
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhhcCCChhHHHHHH
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHLTYPHGLVQKNAA 271 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL~~~~~~v~~~a~ 271 (542)
..+ .....+-..+.+....++++.+..++-.|+-|+..+..+.. ....+.. .+.++ |+.+-..-+.++...+.
T Consensus 488 eeD---fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 488 EED---FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHh---cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 542 22222224455677788888888999999999999887762 4343333 24444 55554444556555555
Q ss_pred HHHHH-H----hcCChHHHHHHHhcCCHHHHHHhhhcCCc------cchHHHHHHHhHhhc-----CChHHHHHHHhhCc
Q psy12594 272 TLLRD-M----CKHNLRLANLVVLAGGLDGLLRLIDCNGG------YNSLPAIMALGYMSA-----QSEQIAEQIIELQG 335 (542)
Q Consensus 272 ~~L~~-L----~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~------~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~ 335 (542)
..+.. . +...++.+..+++ ..+.....++..+++ +-+.+|...|..+.. .+....-.-.+...
T Consensus 564 e~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 564 ESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 44432 2 2222333332222 222222233332211 234445554444321 22222222233355
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 336 VGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 336 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
.|.+--++.+.. .+.-.+|+..+-+.+-...+.-. +--|+.+.+.+++.++.. ...-.+++-++.|++.
T Consensus 643 ypvi~Filkn~i-~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t-~~y~ee~~~al~nfit 711 (970)
T COG5656 643 YPVISFILKNEI-SDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEIT-AVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHHhhhH-HHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccch-hhhHHHHHHHHHHHHH
Confidence 565555566543 45666777777666433322111 112566777777776642 3566788889999963
No 221
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.39 E-value=0.26 Score=35.50 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCC
Q psy12594 142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCD 209 (542)
Q Consensus 142 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 209 (542)
.+.++|++++++..... ...+.+.++++.++++....+ ..+|-.|..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G-~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG-IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHH-HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 46789999999984443 466667799999999998654 8899999999999988 677776665544
No 222
>KOG2611|consensus
Probab=94.37 E-value=6 Score=39.35 Aligned_cols=228 Identities=10% Similarity=0.074 Sum_probs=130.6
Q ss_pred HHHhccCCCHhHHHHHHHHHHHHhcCC---HHHHHHhhhCCChHHHHHhhcCC-------CHHHHHHHHHHHHHHhcCCh
Q psy12594 172 LVQILASPQLSLKHAAAFALDGIVKHS---PELAESASDCDVIPLLIKALNND-------EVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 172 L~~ll~~~~~~~~~~a~~~L~nl~~~~---~~~~~~~~~~~~i~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~ 241 (542)
+..+.+..+.+-|.+|+.....++.++ ...++.+++.=+.+.+-+++... +.-.+.-++..|..+|+..+
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 556666666777888888888888754 34556677787888888888743 33367778888999998753
Q ss_pred hhHH--HHHhhchHH-HHHhhcCC-Chh------HHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchH-
Q psy12594 242 SLAS--TIADGATTL-AVEHLTYP-HGL------VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL- 310 (542)
Q Consensus 242 ~~~~--~~~~~~~i~-L~~lL~~~-~~~------v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~- 310 (542)
... .++ .-+| |...+... |++ +...+..||..++.+ +.....++..|+++.+.+.-..++...-.
T Consensus 96 -lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 96 -LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred -hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 332 233 4577 88888765 444 788899999999977 44455577889999999876665544222
Q ss_pred HHHHHHhHhhcCC---hHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh------HHHHHHHHcCChHH
Q psy12594 311 PAIMALGYMSAQS---EQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV------DNVTALCEENVLST 381 (542)
Q Consensus 311 ~a~~~L~~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~l~~ 381 (542)
-++..+.-..... ++-...+. .++..+..=+... +...+.+.|+.|..+....+ ..+...+-.....-
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~-~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G 248 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVL-HNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG 248 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence 2332222222111 01111111 1122232223332 23678888888886543221 11111222223344
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 382 LLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 382 L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
+..+|.+.- .+.-|.-|.....|+.
T Consensus 249 ~~~IL~~kv-~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 249 VVAILQNKV-APSQRLPALILAANMM 273 (698)
T ss_pred HHHHHhccc-CchhcChHHHHHHHHH
Confidence 455565432 2344445555555553
No 223
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.14 E-value=0.37 Score=34.71 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=51.2
Q ss_pred hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy12594 309 SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE 376 (542)
Q Consensus 309 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 376 (542)
.+.+++++++++.. +.....+.+.++++.++++..+.+...+|--+.++|+-+ +.+.+-...+-+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lgli-s~T~~G~~~L~~~ 69 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLI-SSTEEGAEILDEL 69 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHH-hCCHHHHHHHHHc
Confidence 56899999999764 455556667799999999999887788999999999888 4555555544443
No 224
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.04 E-value=4.8 Score=36.98 Aligned_cols=201 Identities=18% Similarity=0.135 Sum_probs=118.5
Q ss_pred HHHHHHhhc-cCCHHHHHHHHHHHHHHhcCC-hhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 86 VALVLKDLT-KQNKHYKKTALHMLTCVAQQD-ERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 86 l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 163 (542)
++.++.-+. ..++..+...+..|..++.++ ..... ++..+..+...+..+.+..+.+.+..+-..++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 345555344 578999999999999999877 22222 35566667766666665566666666665444321
Q ss_pred HHcCChHHHHHh--------ccC--CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh-cCCCHHHHHHHHHH
Q psy12594 164 VQCGALPPLVQI--------LAS--PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL-NNDEVNVKADAFLC 232 (542)
Q Consensus 164 ~~~g~i~~L~~l--------l~~--~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~ 232 (542)
+.+..++.. ..+ ...+.....+.++..+|...|+.- ...++.+..++ ++.++..+..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333332 111 125566666778899998777633 23458888888 77888899999999
Q ss_pred HHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHH-HHHHHhcCCHHHHHHhhhcCCcc
Q psy12594 233 LADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRL-ANLVVLAGGLDGLLRLIDCNGGY 307 (542)
Q Consensus 233 L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~ 307 (542)
+..+|... ..+. ..... +..-+..+ .+.+....+..+..+....-+. ........++..+-++..+.+.+
T Consensus 146 l~~Lc~~~--vvd~---~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAE--VVDF---YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHh--hccH---HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 99999442 2221 12334 44444444 5677766666555554333111 11122345555666666655543
No 225
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.44 Score=47.90 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=78.0
Q ss_pred CCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHH
Q psy12594 208 CDVIPLLIKA-LNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 208 ~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
.+++..++.. .++.+.++|+.|+-+|+-+|-.++ ..++ .+.+|..+ +..||...+.+|.-.|.+.-..
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~ 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence 3456666666 567788999999999998887765 4455 67777766 8889888888888777665433
Q ss_pred HHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc-CChHHHHHHHhhCchHHHHHhhcC
Q psy12594 285 ANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA-QSEQIAEQIIELQGVGSLQTILQC 345 (542)
Q Consensus 285 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~ 345 (542)
.. ++.|-.+..+.+.-+|..|+-+++-+.. ++++..-.+ .++.+.+.+++..
T Consensus 621 ~a-------~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~ 673 (926)
T COG5116 621 VA-------TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVD 673 (926)
T ss_pred HH-------HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhh
Confidence 22 2344556666777788888888887654 333322111 1344455555544
No 226
>KOG1820|consensus
Probab=93.87 E-value=1.1 Score=48.52 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=128.4
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh-ccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL-TKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
.-+.+-.-+.+.+..-|..|+..+.... ........-...+.+-.+++.. .+.|..+...++.+|..++........
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l--~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAIL--EEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHH--hccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 3445566667888899999998888888 4422111111233444444443 357788899999999999876544433
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH-
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP- 199 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~- 199 (542)
-...++.+.++..+.+..+.++..+..++-.++...+. ..+.+.+...+++.++..+..+...+........
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 33447888999999888888888888877777653222 1346778889999999999887776665554322
Q ss_pred HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594 200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD 239 (542)
Q Consensus 200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 239 (542)
.....-.-.+.+|.++....+.+.++|..+..+++.+.+.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 1111111145678888888899999999999999877654
No 227
>KOG1949|consensus
Probab=93.75 E-value=2 Score=44.57 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=95.8
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhHccCChHH----HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDI----RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~----~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
|.|..-|+-.+..||..|+..+.++.--.+++. .+.+++. -...+.++|+++-+.+|..|..-+..+.+ ...
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 667778888999999999999999884444332 2333332 34578889999999999998877666542 112
Q ss_pred hHhhc----CChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594 120 GLIED----KDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194 (542)
Q Consensus 120 ~~~~~----g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl 194 (542)
.++-. .++..+..-+. +...++|......|..+.. +|. ...+.+.+ +|.+-..|.+....+|.++...|..|
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~-sh~~le~~-Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPL-SHPLLEQL-LPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-Ccc-chhHHHHH-HHhcchhhhccchhHHHHHHHHHHHH
Confidence 22211 22333333333 3347888888888888875 443 23344443 66777777888888999888888766
Q ss_pred hc
Q psy12594 195 VK 196 (542)
Q Consensus 195 ~~ 196 (542)
-.
T Consensus 330 k~ 331 (1005)
T KOG1949|consen 330 KA 331 (1005)
T ss_pred Hh
Confidence 54
No 228
>KOG1788|consensus
Probab=93.48 E-value=2.2 Score=46.32 Aligned_cols=276 Identities=13% Similarity=0.093 Sum_probs=159.2
Q ss_pred ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC--ChhhHHHHHhhchH
Q psy12594 176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD--SPSLASTIADGATT 253 (542)
Q Consensus 176 l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i 253 (542)
|+.++.+++...+..+..|-..++++....-+...+|.++.-+......++...+..|-.-... ....+ ..+
T Consensus 476 LkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPeq------ELl 549 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPEQ------ELL 549 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcHH------HHH
Confidence 4566778888888888888888888888877788899998888877666666666555332111 11122 334
Q ss_pred HHHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc---chHHHHHHHhHhhcCChHHHHH
Q psy12594 254 LAVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY---NSLPAIMALGYMSAQSEQIAEQ 329 (542)
Q Consensus 254 ~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~---~~~~a~~~L~~l~~~~~~~~~~ 329 (542)
.|.-+|+.+ +..++...+.....|..-+....+.+.+.|+++.|..-++...-- -+..++.-...=--.++...+.
T Consensus 550 SLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~ 629 (2799)
T KOG1788|consen 550 SLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQH 629 (2799)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhc
Confidence 466677777 666777777777777766777777788889988888776652110 0111111110000011111111
Q ss_pred HHhhCchHHHHHhhcCCCh-hhHHH------HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHH
Q psy12594 330 IIELQGVGSLQTILQCPHK-EQLQV------AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNA 402 (542)
Q Consensus 330 ~~~~~~l~~L~~ll~~~~~-~~v~~------~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~a 402 (542)
+-....+-.--.+..+++. ..+.+ ...-+|..+..++.++.+.+.+.+++..++..+.+. +-|......
T Consensus 630 ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflind----ehRSslLri 705 (2799)
T KOG1788|consen 630 LDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRI 705 (2799)
T ss_pred cccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHH
Confidence 1111111111122222111 11111 112345566677778888888888777777777543 566666666
Q ss_pred HHHHHhhC-C-----CchhhHHhhcCC---C---------CHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhc
Q psy12594 403 LNILIPKC-E-----NPKELEQMLLGN---V---------SEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI 462 (542)
Q Consensus 403 L~nl~~~~-~-----~i~~L~~lL~~~---~---------~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l 462 (542)
+..++... . .+-.+++.|+ + + ........++++..+.-.+...++.|.+.+|+-.+...
T Consensus 706 vscLitvdpkqvhhqelmalVdtLk-sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLltt 782 (2799)
T KOG1788|consen 706 VSCLITVDPKQVHHQELMALVDTLK-SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTT 782 (2799)
T ss_pred HHHHhccCcccccHHHHHHHHHHHH-hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHH
Confidence 66664321 1 2345556665 3 1 12456677888888876666777888898888776554
No 229
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.47 E-value=8.4 Score=45.91 Aligned_cols=286 Identities=12% Similarity=0.068 Sum_probs=154.3
Q ss_pred CCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChH
Q psy12594 52 DKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLD 128 (542)
Q Consensus 52 s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~ 128 (542)
+.+..+...|+..|+.++...- ++....-.....+.++..++.+ .+.+++...+.++.++..... .-+. .+++
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nIk-SGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNVK-SGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhhh-cCcH
Confidence 3456788899999999983222 3321111234567788777764 668999999999998764321 1122 3677
Q ss_pred HHHhhhc----CCCHHHHHHHHHHHHHhhcCChHHHHHHHH--c----CChHHHHHhccCC-CHhHHHHHHHHHHHHhcC
Q psy12594 129 SIISSLH----DFDPDTRANAALALGGLAKDNKHFAERIVQ--C----GALPPLVQILASP-QLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 129 ~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~--~----g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~ 197 (542)
.+..++. +.++.+...|..++..+..+.- ..+.. . .+|..|..+.... +.++-..|+..|.+++..
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 7777765 4457777777777777664211 11110 1 2233444444332 344555566666654210
Q ss_pred CHH---------------------------HHHHhhh-----CCChHHH---HHhhcCCCHHHHHHHHHHHHHHhcCC--
Q psy12594 198 SPE---------------------------LAESASD-----CDVIPLL---IKALNNDEVNVKADAFLCLADIAKDS-- 240 (542)
Q Consensus 198 ~~~---------------------------~~~~~~~-----~~~i~~L---~~ll~~~~~~~~~~a~~~L~~l~~~~-- 240 (542)
-.+ ....+.+ ...+|.| ..+..+..++||..|+..|..+-...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 000 0000000 1123333 34455778999999999998876432
Q ss_pred ---hhhHHHHHhhchHHHHHhhcCC-----------------------ChhHHHHHHHHHHHHhcCChHHHHHH--HhcC
Q psy12594 241 ---PSLASTIADGATTLAVEHLTYP-----------------------HGLVQKNAATLLRDMCKHNLRLANLV--VLAG 292 (542)
Q Consensus 241 ---~~~~~~~~~~~~i~L~~lL~~~-----------------------~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~ 292 (542)
++....+...-+.|+++.++.. +.++...+..+|.+++.--...-..+ .-.+
T Consensus 1381 ~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~ 1460 (1780)
T PLN03076 1381 LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKK 1460 (1780)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555553333465554311 12345556666666653322221111 1124
Q ss_pred CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHH-HHHHhhCchHHHHHhhcC
Q psy12594 293 GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA-EQIIELQGVGSLQTILQC 345 (542)
Q Consensus 293 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll~~ 345 (542)
.+..|..++..++..+...+..+|.+|...+.... ...+ ..++..+.+++..
T Consensus 1461 ~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W-~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1461 VLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKW-LEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHH-HHHHHHHHHHHHH
Confidence 55556666677888888888888888876443322 2222 2455566666655
No 230
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.45 E-value=0.74 Score=40.59 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhhhHhh----------------cCChHHHHhhhcC------CCHHHHHHHHHHHHHhh
Q psy12594 96 QNKHYKKTALHMLTCVAQQDERCAGLIE----------------DKDLDSIISSLHD------FDPDTRANAALALGGLA 153 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~l~ 153 (542)
++......++.+|.|++..+.....+.+ ...+..|+..+.. ....-....+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3344555666777777766544443211 1256666666654 12344566778899999
Q ss_pred cCChHHHHHHHHc--CC--hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594 154 KDNKHFAERIVQC--GA--LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS 206 (542)
Q Consensus 154 ~~~~~~~~~i~~~--g~--i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 206 (542)
. .++.|+.+.+. +. +..|+.++...+..-|.-++.+|.|+|.+. +....+.
T Consensus 87 ~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~-~~H~~LL 141 (192)
T PF04063_consen 87 Q-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT-DSHEWLL 141 (192)
T ss_pred C-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH-hHHHHhc
Confidence 8 66778888866 34 777888888888778889999999999954 3444444
No 231
>KOG0891|consensus
Probab=93.35 E-value=4.4 Score=49.14 Aligned_cols=270 Identities=17% Similarity=0.216 Sum_probs=150.8
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhhhHh------hcCChHHHHhh-hcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLI------EDKDLDSIISS-LHDFDPDTRANAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~g~v~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 163 (542)
..+...+++++..+...+..+........+.. ....+..+..+ +.++++.++......+. ..+-...
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~l 561 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQL 561 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhh
Confidence 34566889999998777666554432211111 11112222222 23455666655444333 2222334
Q ss_pred HHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 164 VQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL 243 (542)
Q Consensus 164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 243 (542)
.+.+.+..+...+.++.-..+..+...+++++..+|...-.......+..+.++..+.-..+...+..-+..+....+..
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 44455666777778888889999999999999987744333332333333333333333333333333333332222222
Q ss_pred HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc-CCccchHHHHHHHhHhhc
Q psy12594 244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC-NGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~ 321 (542)
..... ...+. ++..+.+.+..+...+..++..||.-.-+......+ ..++.+.+.+.. .+...+.++.++++++..
T Consensus 642 i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 642 ISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 22222 24445 778888888888888888888888654433322233 344444444443 444577889999999976
Q ss_pred CChHHHHHHH-hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH
Q psy12594 322 QSEQIAEQII-ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD 368 (542)
Q Consensus 322 ~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 368 (542)
...-...... ...++..+...+..+....++..+...++++...++.
T Consensus 720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 5333222221 2246667777777766678899999999988765543
No 232
>KOG1788|consensus
Probab=93.06 E-value=12 Score=41.10 Aligned_cols=239 Identities=14% Similarity=0.061 Sum_probs=133.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc---CCHHHHHHhhhCCCh
Q psy12594 135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK---HSPELAESASDCDVI 211 (542)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~---~~~~~~~~~~~~~~i 211 (542)
+.++.+.+...+..+..+-...+++-...-+.--+|.++.-+......+|...+.+|.--.. +-|+ ++ +
T Consensus 477 kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvncvPe-qE-------L 548 (2799)
T KOG1788|consen 477 KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVNCVPE-QE-------L 548 (2799)
T ss_pred HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhccCcH-HH-------H
Confidence 45566677777777777777677776666666778888888877666666665555432211 0111 11 1
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC------CC---------------h----
Q psy12594 212 PLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY------PH---------------G---- 264 (542)
Q Consensus 212 ~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~------~~---------------~---- 264 (542)
-.|+-+|+.+ ...+....+..+..|...+..+++.+.+-|+++ |...++. +| +
T Consensus 549 lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~ 628 (2799)
T KOG1788|consen 549 LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQ 628 (2799)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhh
Confidence 1244445433 334444445555555555545555666666666 5544422 00 0
Q ss_pred ----------------------hHHH------HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHH
Q psy12594 265 ----------------------LVQK------NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL 316 (542)
Q Consensus 265 ----------------------~v~~------~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 316 (542)
.+.. ....+|..+.+++.++.+.+.+..++..++.++ -++..|..-++++
T Consensus 629 ~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLriv 706 (2799)
T KOG1788|consen 629 HLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIV 706 (2799)
T ss_pred ccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHH
Confidence 0111 224566777777778877777777777777766 3445566677777
Q ss_pred hHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-----------hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHH
Q psy12594 317 GYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-----------EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSK 385 (542)
Q Consensus 317 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~l 385 (542)
..|...++.+.. ++-+-.+++.|+++-. .......+.+++.+..-+...+..+-+++++..|...
T Consensus 707 scLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLltt 782 (2799)
T KOG1788|consen 707 SCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTT 782 (2799)
T ss_pred HHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHH
Confidence 777665554321 1223344555554211 1234455666667654455555566677777776665
Q ss_pred Hh
Q psy12594 386 IT 387 (542)
Q Consensus 386 l~ 387 (542)
|.
T Consensus 783 Lh 784 (2799)
T KOG1788|consen 783 LH 784 (2799)
T ss_pred HH
Confidence 54
No 233
>KOG1820|consensus
Probab=93.03 E-value=3.5 Score=44.82 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=120.8
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhh-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy12594 91 KDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSL-HDFDPDTRANAALALGGLAKDNKHFAERIVQCGA 168 (542)
Q Consensus 91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~ 168 (542)
.-+.+.+..-|..++.-+........ ... ....|.+..++... .+.+..+-..++.+|..++......... ...++
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v 337 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNV 337 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhh
Confidence 34556777888888888888765543 111 11223344444433 3556777888888888888544332111 22356
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHH
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTI 247 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 247 (542)
.|.++..+.+....++..+..++..++...+. ....+.+...+.+.++.++..+...+........ .....-
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 88899999988888888887777776653321 3345788899999999999997777776655433 222222
Q ss_pred HhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 248 ADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 248 ~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
.-...++ ++....+.+.+||..+..++..+-+
T Consensus 411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2346788 8888889999999999999887764
No 234
>KOG2137|consensus
Probab=92.70 E-value=4.2 Score=42.57 Aligned_cols=134 Identities=17% Similarity=0.152 Sum_probs=90.0
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPE 200 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~ 200 (542)
+...++|.|...+++.+..+++.++..+..++..-+ -..++.-++|.+-.+. +..+..++..++.|+..+..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---- 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---- 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----
Confidence 345678889999999999999999998888875322 2333444567666653 44568999999999999884
Q ss_pred HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCC
Q psy12594 201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPH 263 (542)
Q Consensus 201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~ 263 (542)
..+...-...+..+.+..+..++.+....+.+..++.-....- ..+....++| ++.+...+.
T Consensus 459 ~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 459 RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 1221111233455556666778898888888888777654322 3445567888 777666653
No 235
>KOG1992|consensus
Probab=92.57 E-value=17 Score=38.94 Aligned_cols=375 Identities=13% Similarity=0.059 Sum_probs=184.9
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHH----HHHHHh--cCChhh
Q psy12594 45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALH----MLTCVA--QQDERC 118 (542)
Q Consensus 45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~----~L~~l~--~~~~~~ 118 (542)
.+++++-+....+|.+--.+|.-++....|+.+. ..++.|+..+++.+-.+-...+. ++.+.- ..++..
T Consensus 92 lIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWp-----tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL 166 (960)
T KOG1992|consen 92 LIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWP-----TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDAL 166 (960)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhccccchhhH-----HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHH
Confidence 5667777888889999899999998322366533 46777888777655433333222 222221 111111
Q ss_pred hh-Hh--hcCChHHHHhhhc---------CCCHH-------HHHHHHHHHHHhh-cCChHHHHHHHHcCChHHHHHhccC
Q psy12594 119 AG-LI--EDKDLDSIISSLH---------DFDPD-------TRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILAS 178 (542)
Q Consensus 119 ~~-~~--~~g~v~~Lv~lL~---------~~~~~-------~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~ 178 (542)
-. +. -...-.++..++. ..|.. +....+.....+. .+-|++.+.-.+.+ ++.+.+++..
T Consensus 167 ~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~w-M~~F~k~l~~ 245 (960)
T KOG1992|consen 167 WLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTW-MGAFHKLLTY 245 (960)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHH-HHHHHHHHhc
Confidence 11 10 0011123333332 11211 1122223333333 23344444444433 6677777763
Q ss_pred CC-------------HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCC
Q psy12594 179 PQ-------------LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND-----EVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 179 ~~-------------~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~ 240 (542)
++ ..++...+..+.--+...++....++ ..++.....++.+. -+.+...|...|.++++..
T Consensus 246 ~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl-~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~ 324 (960)
T KOG1992|consen 246 DNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFL-PDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRP 324 (960)
T ss_pred cCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhH-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhh
Confidence 22 23444555554444443444443333 33344444555432 2346777788888887764
Q ss_pred hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccc-hHHHHHHHhH
Q psy12594 241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYN-SLPAIMALGY 318 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~-~~~a~~~L~~ 318 (542)
.....+...+++. +.+...-+ |++... ..+.+.+...++.+-+-+...|... |..|+..++.
T Consensus 325 -~y~~~F~~~~vl~~i~e~Vvlp-------------N~~lR~--eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 325 -HYAELFEGENVLAQICEKVVLP-------------NLILRE--EDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred -hhHhhhcchHHHHHHHHhhccc-------------ccccch--hhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence 4555555555555 55444333 222211 1123556677778888888887764 5567778888
Q ss_pred hhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHHHHHHHHhhcCChHHHHHH------------HHcCChHHHHHH
Q psy12594 319 MSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAAAWTLGQIGKHSVDNVTAL------------CEENVLSTLLSK 385 (542)
Q Consensus 319 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l------------~~~~~l~~L~~l 385 (542)
|+...+.....++...+-..|-+....++. ..-+..+.+....++........-+ ....++|.|.+-
T Consensus 389 L~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~ 468 (960)
T KOG1992|consen 389 LCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSP 468 (960)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccC
Confidence 988776665555554333333344444332 2233444455555543322222211 111222222110
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhh------CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594 386 ITQTCVSDNLKSKCKNALNILIPK------CENPKELEQMLLGNVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 386 l~~~~~~~~v~~~a~~aL~nl~~~------~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
+....+-+|..+..-+.-+-.+ ...+|.+.+.|+ ....-+=.++..++.+++...++
T Consensus 469 --~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~-a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 469 --NVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLE-AESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred --ccccccchhhcccceeeeecccCChHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHhccccccC
Confidence 1111223443332221111001 123677777777 66666777888888888876655
No 236
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.51 E-value=9.2 Score=35.76 Aligned_cols=216 Identities=16% Similarity=0.147 Sum_probs=118.8
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594 45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~ 122 (542)
.|-..|.++|+.+|..|+..|..+...-.++. ....-+..|++++.+ .+......++..+..+.....-....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 45677899999999999999999882222221 122234455555432 44444444466666665332110000
Q ss_pred hcCChHHHHhhhc--CCCHHHHHHHHHHHHHhhcCChHHHHHHH--HcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcC
Q psy12594 123 EDKDLDSIISSLH--DFDPDTRANAALALGGLAKDNKHFAERIV--QCGALPPLVQILASP-QLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 123 ~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~ 197 (542)
....+..+.+-.. +.....|..+...+..+..... ..+. ..+.+..+++.+..+ ||.....+...+..+...
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 0112222222221 1225677778888887775332 2222 234577788888765 587777777777766653
Q ss_pred CHHHHHHhhhCCChHHHHHhhc---------CC-CH--HHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCCh
Q psy12594 198 SPELAESASDCDVIPLLIKALN---------ND-EV--NVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHG 264 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~---------~~-~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~ 264 (542)
-+ . ....+-+...+. .+ ++ =.++.-..+|.+.-...+.+.. -.+| |++-|.++.+
T Consensus 155 ~~------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 155 FD------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSP 222 (262)
T ss_pred cc------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCc
Confidence 22 1 222333333332 11 21 1233333333333333333333 5788 9999999999
Q ss_pred hHHHHHHHHHHHHhcC
Q psy12594 265 LVQKNAATLLRDMCKH 280 (542)
Q Consensus 265 ~v~~~a~~~L~~L~~~ 280 (542)
.++..++.+|...+..
T Consensus 223 ~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 223 SVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 237
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=92.46 E-value=3.9 Score=41.13 Aligned_cols=235 Identities=11% Similarity=0.112 Sum_probs=131.5
Q ss_pred hHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHH
Q psy12594 34 IHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCV 111 (542)
Q Consensus 34 ~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l 111 (542)
.....+...+..|+.++.|+|+..|......|.++- .. ...+..+ .......+.+.+.. ....-....+.+++.+
T Consensus 126 ~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy--~k~~~~r~~I-r~~i~~~~~~fi~e~~~~~gI~elLeil~si 202 (409)
T PF01603_consen 126 AKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIY--GKFPNLRSFI-RKSINNIFYRFIYETERHNGIAELLEILGSI 202 (409)
T ss_dssp CTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHH--HH-TTTHHHH-HHHHHHHHHHHHHTTS--STHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HHhhhhHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHHHHH
Confidence 445666778888999999999999999998888877 32 2222222 22333455555553 3344556667777777
Q ss_pred hcCC-----hhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHH
Q psy12594 112 AQQD-----ERCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKH 185 (542)
Q Consensus 112 ~~~~-----~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 185 (542)
..+- ++...+. ...++.+.+... ......-..++..+...++.....+ +..+++.=-..++.=+.
T Consensus 203 i~gf~~plk~eh~~fl----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev 273 (409)
T PF01603_consen 203 INGFAVPLKEEHKQFL----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEV 273 (409)
T ss_dssp HTT--SS--HHHHHHH----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHH
T ss_pred HhccCCCCcHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHH
Confidence 6541 2222222 234455555544 2333444555666665555543333 33344444444444444
Q ss_pred HHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhhcC-
Q psy12594 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHLTY- 261 (542)
Q Consensus 186 ~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL~~- 261 (542)
.-+.-+..+...-+.....-+.......+...+.+.+..|.+.|+..+.| +.....+.+ ..++| +..-|..
T Consensus 274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHH
Confidence 44445555555332222222223455777888889999998888765432 223333322 34666 6666543
Q ss_pred ---C-ChhHHHHHHHHHHHHhcCChHHH
Q psy12594 262 ---P-HGLVQKNAATLLRDMCKHNLRLA 285 (542)
Q Consensus 262 ---~-~~~v~~~a~~~L~~L~~~~~~~~ 285 (542)
. +..++..+..++..+..-++..-
T Consensus 349 ~~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 349 SKNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp TSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 2 78999999999999987776543
No 238
>KOG4464|consensus
Probab=92.37 E-value=12 Score=36.64 Aligned_cols=137 Identities=16% Similarity=0.189 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhc---C-------CChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCc
Q psy12594 17 RLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA---D-------KVPSIQHAALATLGKLMCAKH-VDIRQEVLERNL 85 (542)
Q Consensus 17 r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~---s-------~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~ 85 (542)
|...++++.-++.++..-+.+....-+..|..+-+ . .|-.+...++++|+++. .+ ...+....+...
T Consensus 63 ~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv--f~Sq~~q~~~~~~~~ 140 (532)
T KOG4464|consen 63 RVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV--FHSQRAQDLFLENPL 140 (532)
T ss_pred hhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH--hccHHHHHHHHhhhh
Confidence 44556777777776666555544444444444421 1 23378889999999999 77 778888888777
Q ss_pred HHHHHHhhccC-----CHHHHHHHHHHHHHHhcCChhhhh--HhhcCChHHHHhhhcCC---------C---H---HHHH
Q psy12594 86 VALVLKDLTKQ-----NKHYKKTALHMLTCVAQQDERCAG--LIEDKDLDSIISSLHDF---------D---P---DTRA 143 (542)
Q Consensus 86 l~~Lv~~L~~~-----~~~~~~~a~~~L~~l~~~~~~~~~--~~~~g~v~~Lv~lL~~~---------~---~---~~~~ 143 (542)
...+++.+... ...++..-+..|.-+..-.++++. +.+.++++.+.+.+.+. . | ....
T Consensus 141 ~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~ 220 (532)
T KOG4464|consen 141 TGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINVPPLNPQETNRAC 220 (532)
T ss_pred HHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCCCCCCHHHHHHHH
Confidence 77777765431 124445555555555544556655 77889999999998642 1 1 2335
Q ss_pred HHHHHHHHhhcC
Q psy12594 144 NAALALGGLAKD 155 (542)
Q Consensus 144 ~a~~~L~~l~~~ 155 (542)
.++.++.|+..+
T Consensus 221 EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 221 EALKVFFNVTCD 232 (532)
T ss_pred HHHHHHhheeec
Confidence 566777777743
No 239
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.30 E-value=0.45 Score=36.26 Aligned_cols=84 Identities=25% Similarity=0.227 Sum_probs=63.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594 86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ 165 (542)
Q Consensus 86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 165 (542)
+...+..+.++.+.+|..++..|+++..... .......+++..+...|+++|+-+-..|+.+|..++...+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------
Confidence 4566777888889999999999999986654 11123346788889999999999999999999999975554
Q ss_pred cCChHHHHHhccC
Q psy12594 166 CGALPPLVQILAS 178 (542)
Q Consensus 166 ~g~i~~L~~ll~~ 178 (542)
.+++.|++...+
T Consensus 77 -~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -EVLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHHhC
Confidence 235666655443
No 240
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.17 E-value=1.2 Score=39.20 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=59.3
Q ss_pred hhHhhcCChHHHHhhhcC---------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHH
Q psy12594 119 AGLIEDKDLDSIISSLHD---------FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAF 189 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~ 189 (542)
..|++.||+..|++.|.. .+......++.||..+..........+-..+++..++..|.+++..++..++.
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~le 180 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALE 180 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHH
Confidence 338888999999988842 34678889999999998765554444445688999999999999999999999
Q ss_pred HHHHHh
Q psy12594 190 ALDGIV 195 (542)
Q Consensus 190 ~L~nl~ 195 (542)
+|..+|
T Consensus 181 iL~~lc 186 (187)
T PF06371_consen 181 ILAALC 186 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 241
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.14 E-value=7.1 Score=34.75 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCC-----CHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHH
Q psy12594 102 KTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDF-----DPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQ 174 (542)
Q Consensus 102 ~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ 174 (542)
..++..|.-++++. +.+. +.+..+--.+...|... ..-+|..++.+++.+.. +++...+.+....++|.+++
T Consensus 118 cnaL~lLQclaShP-etk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHP-ETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCc-chheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 34555666666655 5555 76665443444444322 25688889999999885 45566677778899999999
Q ss_pred hccCCCHhHHHHHHHHHHHHhcCCHHHHHH------hhh-CCChH-HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q psy12594 175 ILASPQLSLKHAAAFALDGIVKHSPELAES------ASD-CDVIP-LLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245 (542)
Q Consensus 175 ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~------~~~-~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 245 (542)
++..++.-.+..|+.++..+..++...... +.. ...+. ...++.+.+...+...++++-..+|.+. ..+.
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p-~aR~ 274 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP-HARA 274 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH-hHHH
Confidence 999988888888999998887754321111 100 11111 2223344556778888888888887663 3444
No 242
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.13 E-value=2.1 Score=36.90 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=75.2
Q ss_pred CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh--hCchHHHHHhhcCCChhhHHHHHHHHHHHhh---cCC
Q psy12594 292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE--LQGVGSLQTILQCPHKEQLQVAAAWTLGQIG---KHS 366 (542)
Q Consensus 292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~---~~~ 366 (542)
..+.++..++++.++..+-.++..++.++..++. +.+.+ ...+..++.+++......+++.++.++..|. .+.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566788999999999999999999988876532 12222 2467788899998766788888888888775 344
Q ss_pred hHHHHHHHHc---CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 367 VDNVTALCEE---NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 367 ~~~~~~l~~~---~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
++..+.+.-. ++++.++.++.+ ......+..+|..++..
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHH
Confidence 5555555432 344555555543 24566666666666543
No 243
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.12 E-value=3.6 Score=36.54 Aligned_cols=99 Identities=19% Similarity=0.349 Sum_probs=76.3
Q ss_pred HHH-HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC-----CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHH
Q psy12594 17 RLC-FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD-----KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVL 90 (542)
Q Consensus 17 r~~-~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s-----~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv 90 (542)
|.+ ++..+-.++++|+.+..|.++.+--.+-..|.. .-+-.|..++..++.|....+......+....++|.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 443 456667778899999999998765455555532 23467899999999999433377888888899999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCC
Q psy12594 91 KDLTKQNKHYKKTALHMLTCVAQQD 115 (542)
Q Consensus 91 ~~L~~~~~~~~~~a~~~L~~l~~~~ 115 (542)
+++..+++..+.-++.++..+..++
T Consensus 196 rIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccc
Confidence 9999988888888888888876544
No 244
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=92.07 E-value=11 Score=37.18 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=82.4
Q ss_pred hHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCh
Q psy12594 169 LPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN------NDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 169 i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+.+-+-+...+ ..-|.+|+..|..++..-++....++ ...+..++. ..+..-+..|+..++.|+....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~ 287 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS 287 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence 333333444333 56788888999999874333333332 122333333 3467888999999999987652
Q ss_pred hh------------HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccc
Q psy12594 242 SL------------ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYN 308 (542)
Q Consensus 242 ~~------------~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~ 308 (542)
.. ...+....++| |. --.+..+-++..|++.+..+...-+... + .+++|.++.+|.+++.-+
T Consensus 288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~--l--~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ--L--LQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp -BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH--H--HHHHHHHHHHTTSS-HHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH--H--HHHHHHHHHHhCCCCcch
Confidence 21 12333344555 44 1112367789999999888876544322 1 357899999999999888
Q ss_pred hHHHHHHH
Q psy12594 309 SLPAIMAL 316 (542)
Q Consensus 309 ~~~a~~~L 316 (542)
...|+.++
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 88887664
No 245
>KOG2137|consensus
Probab=91.86 E-value=1.4 Score=45.93 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=103.3
Q ss_pred ChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594 168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI 247 (542)
Q Consensus 168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 247 (542)
++|.|...++..+ -.+.-+.++.|+-.-.......-+...++|.|..-+++.+..+++.++..+..+++.-+ -.+
T Consensus 350 ~~p~l~pi~~~~~--~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~ 424 (700)
T KOG2137|consen 350 MLPALKPIYSASD--PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPF 424 (700)
T ss_pred hhHHHHHHhccCC--cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHH
Confidence 3666666666422 12222334444321111122222335667888888999999999999999998876532 344
Q ss_pred HhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChH
Q psy12594 248 ADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ 325 (542)
Q Consensus 248 ~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 325 (542)
+...++| |-.+... .+..++.+++-|+..+... .....-...+..+....+..++.+....+++..++......
T Consensus 425 vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 425 VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 5567788 7666433 4889999999999998821 11111123345556666677888777777777766654443
Q ss_pred HHHHHHhhCchHHHHHhhcCC
Q psy12594 326 IAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 326 ~~~~~~~~~~l~~L~~ll~~~ 346 (542)
. ..++...++|.++.+...+
T Consensus 501 g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 501 G-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred c-eeeehhhhhhhhhhhhhcc
Confidence 3 3444557778777776654
No 246
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.76 E-value=1.9 Score=38.06 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=73.3
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc---------CCHHHHHHHHHHHHHHhcC
Q psy12594 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK---------QNKHYKKTALHMLTCVAQQ 114 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~---------~~~~~~~~a~~~L~~l~~~ 114 (542)
..++..+.+..... ..+..|..............|++.||+..|+..|.. .+......++.++..+...
T Consensus 69 ~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~ 146 (187)
T PF06371_consen 69 EWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT 146 (187)
T ss_dssp HHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc
Confidence 34555555443322 333333333311234567788889999999998752 3357888999999999877
Q ss_pred Chhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594 115 DERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLA 153 (542)
Q Consensus 115 ~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 153 (542)
...... +-..+.+..++..|.++++.+|..++..|..++
T Consensus 147 ~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 147 KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 766666 556789999999999999999999999998775
No 247
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.70 E-value=15 Score=36.38 Aligned_cols=128 Identities=14% Similarity=0.185 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhh------cCCccchHHHHHHHhHhhcCChH------------
Q psy12594 264 GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID------CNGGYNSLPAIMALGYMSAQSEQ------------ 325 (542)
Q Consensus 264 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~------~~~~~~~~~a~~~L~~l~~~~~~------------ 325 (542)
...|..|+..+..|+...+.....++ ...+..++. +.++..+..|+..++.++.....
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 44677899999999865433322221 122333333 24556777889999988854321
Q ss_pred HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 326 IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 326 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
....+....++|-|. -.....+-++..|++.+..+-..-+. ..+. +++|.++..|.++ +.-|+..|+.++
T Consensus 301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~--~~vv~tyAA~~i 370 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSS--SYVVHTYAAIAI 370 (370)
T ss_dssp -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS---HHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCC--CcchhhhhhhhC
Confidence 234445556666655 12223467899999999888443222 2222 3789999999987 457888888775
No 248
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.48 E-value=1.4 Score=33.64 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=56.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594 212 PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 212 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
...+..+.++.+.+|..++..|..+..... ........++. +...|+++|+-|--+|+.+|..|+...|.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 445667788889999999999999998764 22222357778 88999999999999999999999976554
No 249
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.47 E-value=1.6 Score=37.44 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=32.1
Q ss_pred CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHH
Q psy12594 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT 371 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 371 (542)
..++.|.++++.+....+|.++.+++|.|++-+|-..+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 56788999999987789999999999999987765444
No 250
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.99 E-value=2.3 Score=36.38 Aligned_cols=145 Identities=19% Similarity=0.205 Sum_probs=81.5
Q ss_pred CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594 84 NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162 (542)
Q Consensus 84 ~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (542)
..++.|+.+|+. .+..+|.+++++|+.+..-+|...+....+.-.. .-...+......... ........++
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~---~~~~~~~~~~~~~l~-~~~~~~~~ee---- 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSK---SSENSNDESTDISLP-MMGISPSSEE---- 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCcc---ccccccccchhhHHh-hccCCCchHH----
Confidence 356677788876 4699999999999999877766655211111000 001111111111111 1111112223
Q ss_pred HHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 163 IVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 163 i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
..-..++..|++.|+++. ..-...++.++.++.......+.... ..++|.++..++..+...++...+-|+.|.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333334788888888875 34444566666666542211222222 466789999999777788888877777664
No 251
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.97 E-value=16 Score=35.53 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=108.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhc-CChhhhh-Hhhc-C-ChHHHHhhhcCC-----C--------HHHHHHHHHH
Q psy12594 86 VALVLKDLTKQNKHYKKTALHMLTCVAQ-QDERCAG-LIED-K-DLDSIISSLHDF-----D--------PDTRANAALA 148 (542)
Q Consensus 86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~-~~~~~~~-~~~~-g-~v~~Lv~lL~~~-----~--------~~~~~~a~~~ 148 (542)
++.+.+.|++....+...++..|..+.. ....... +... + -.+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888988888888899999999987 4434444 4432 2 234455555211 1 2788777765
Q ss_pred HHH-hhcCChHHHHHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHH-HhcCC---HHHHHHhhhCCChHHHHHhhcCCC
Q psy12594 149 LGG-LAKDNKHFAERIVQC-GALPPLVQILASPQLSLKHAAAFALDG-IVKHS---PELAESASDCDVIPLLIKALNNDE 222 (542)
Q Consensus 149 L~~-l~~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~n-l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~ 222 (542)
+.. +...++..+..+++. +.+..+.+.|..+++++....+.+|.. +..+. ...+..++....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 554 446677777777765 678889999998889999999888885 44322 334445666777888888877666
Q ss_pred H----HHHHHHHHHHHHHhcCC
Q psy12594 223 V----NVKADAFLCLADIAKDS 240 (542)
Q Consensus 223 ~----~~~~~a~~~L~~l~~~~ 240 (542)
+ .+...+-..|..+|.+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCC
Confidence 6 78888888888888654
No 252
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.88 E-value=8 Score=36.40 Aligned_cols=183 Identities=18% Similarity=0.158 Sum_probs=100.7
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcC--cHHHHHHhhc----cCCHHHHHHHHHHHHHHhcCChh
Q psy12594 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERN--LVALVLKDLT----KQNKHYKKTALHMLTCVAQQDER 117 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~--~l~~Lv~~L~----~~~~~~~~~a~~~L~~l~~~~~~ 117 (542)
..+...+.+=.++.+.-++..++-++ -++.....+...+ ....+...+. ...+..+..++++++|+..+...
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~--l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAA--LHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHC--CCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHH--hCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 33444444434455667777777777 6655555444333 2334444433 25688899999999999877655
Q ss_pred hhhHhhc-C-ChHHHHhhhcCC----CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhcc-C-CCHhHHHHHH
Q psy12594 118 CAGLIED-K-DLDSIISSLHDF----DPDTRANAALALGGLAKDNKHFA-ERIVQCGALPPLVQILA-S-PQLSLKHAAA 188 (542)
Q Consensus 118 ~~~~~~~-g-~v~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~-~-~~~~~~~~a~ 188 (542)
...+... + .+...+..+... +..+|..++..+.|++......+ ..-.....+..+++.+. . .+++....++
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 5543332 3 333343333333 68889888889999873111100 00001112455556333 2 4799999999
Q ss_pred HHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHH
Q psy12594 189 FALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKAD 228 (542)
Q Consensus 189 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~ 228 (542)
-+|+++...++.........++-..+...-. ...+.+++.
T Consensus 224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v 264 (268)
T PF08324_consen 224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEV 264 (268)
T ss_dssp HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHH
Confidence 9999999866554444333333333333322 334444443
No 253
>KOG1822|consensus
Probab=90.61 E-value=43 Score=39.70 Aligned_cols=231 Identities=16% Similarity=0.205 Sum_probs=120.7
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG- 120 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~- 120 (542)
...++..+...+|..+..+..++.+++ ...+-..- -....+..++-+.+ .++-.|..-.-+++.+-+.......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLa--q~v~~~~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLA--QVVGSAPF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHH--Hhccccch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 344556667778888888888888888 43111010 12234455666665 3333333223333333322211111
Q ss_pred HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-CCC--HhHHHHHHHHHH----
Q psy12594 121 LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-SPQ--LSLKHAAAFALD---- 192 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~--~~~~~~a~~~L~---- 192 (542)
-.....+..+..+.+++. |.++..++.++.-+...........++.. +..+..++. .++ .++...--+++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~t-lsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPT-LSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHH-HHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 112234566677776665 69999999999988854444334443333 333334433 332 223222222222
Q ss_pred --HHhc-CCHHHH-------HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC
Q psy12594 193 --GIVK-HSPELA-------ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY 261 (542)
Q Consensus 193 --nl~~-~~~~~~-------~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~ 261 (542)
++.. -.|+.. ...+....+-...-++.++++..+..+..++-++.-..+. .+.-.-.++ +..++..
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr---~~n~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR---HVNLDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch---hccHHHHHHHHHHHhcc
Confidence 2211 011100 0001111112223334455788888899998888766542 222234566 8888888
Q ss_pred CChhHHHHHHHHHHHHhcCC
Q psy12594 262 PHGLVQKNAATLLRDMCKHN 281 (542)
Q Consensus 262 ~~~~v~~~a~~~L~~L~~~~ 281 (542)
.-.-.|...+.+++.+....
T Consensus 1110 ~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHH
Confidence 87778888888888887554
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.51 E-value=7.3 Score=34.03 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhcC-CHHHHH----Hhh-hC------CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-
Q psy12594 183 LKHAAAFALDGIVKH-SPELAE----SAS-DC------DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD- 249 (542)
Q Consensus 183 ~~~~a~~~L~nl~~~-~~~~~~----~~~-~~------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~- 249 (542)
+|..|+.+|..++.. ++.... .++ +. ...+.+.-++.++++.+|..|+.++..|-++...+.....+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 577788888888775 221111 111 11 22344555667889999999999999997765332221111
Q ss_pred ------------------hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHH-HHhcCCHHHHHHhhhcCCccc
Q psy12594 250 ------------------GATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANL-VVLAGGLDGLLRLIDCNGGYN 308 (542)
Q Consensus 250 ------------------~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~~~i~~Lv~lL~~~~~~~ 308 (542)
..... |+..|+.. +..+....+.++..|....|-..-. =.-...+..+..++.+.|+.+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 12334 56666665 7888889999999999887654311 011234556667788899999
Q ss_pred hHHHHHHHhHhhcC
Q psy12594 309 SLPAIMALGYMSAQ 322 (542)
Q Consensus 309 ~~~a~~~L~~l~~~ 322 (542)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988654
No 255
>KOG2933|consensus
Probab=90.40 E-value=2.3 Score=39.74 Aligned_cols=143 Identities=12% Similarity=0.112 Sum_probs=97.9
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC
Q psy12594 255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ 334 (542)
Q Consensus 255 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 334 (542)
.+..|.+.+-.....++..++.|+...++....... .++..++.-++.....+...|+.+++.+...-.+....
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~----- 166 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ----- 166 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 667777777788888888888888766654443332 45667778888888889999999999987654433332
Q ss_pred chHHHH-HhhcCCC--hhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594 335 GVGSLQ-TILQCPH--KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE 411 (542)
Q Consensus 335 ~l~~L~-~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~ 411 (542)
.+..++ .++.... +.-+++.|..+|..++.+-..+ .+++.|+..+.+.. ..++..++....+.....+
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n--~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSN--PRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhc--hhhhhhhhccccccceecc
Confidence 222233 3333322 2468999999999987654322 25678888888874 5899999888888776655
Q ss_pred C
Q psy12594 412 N 412 (542)
Q Consensus 412 ~ 412 (542)
+
T Consensus 238 v 238 (334)
T KOG2933|consen 238 V 238 (334)
T ss_pred c
Confidence 3
No 256
>KOG2933|consensus
Probab=90.40 E-value=1.3 Score=41.42 Aligned_cols=141 Identities=20% Similarity=0.265 Sum_probs=96.4
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV 164 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 164 (542)
.+...++.|.+++...+..++..+..++...++...-.-+.++-.+++-+++....+-..|+.++..+...-. ..+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln---~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN---NSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4556777888899999999999999998766544441222466677777888888999999999998875222 2222
Q ss_pred HcCChHHH-HHhcc---CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 165 QCGALPPL-VQILA---SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 165 ~~g~i~~L-~~ll~---~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
+ ....+ ..++. .++.-+++.|-.+|..+..+-.. ..+++.|+..+++..+.++..++.++.+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 12223 33333 23467899999999988874321 234577888888889999988887766553
No 257
>KOG1822|consensus
Probab=90.15 E-value=47 Score=39.42 Aligned_cols=297 Identities=18% Similarity=0.148 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC-CHHHHHHHHH------HHHHHhcCChh--hhh-HhhcC
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ-NKHYKKTALH------MLTCVAQQDER--CAG-LIEDK 125 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~------~L~~l~~~~~~--~~~-~~~~g 125 (542)
.+...|....+.+.....+..+..+.+ .++..+.-.+.. ...++..+.. ++..++..... ... .+..-
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile--~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~ 876 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILE--HFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSS 876 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHH--HHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHH
Confidence 455667777777772222445444443 233333322222 2334444333 34444433321 111 22333
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAES 204 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~ 204 (542)
....++..+...+|..+-.+..+++.++..-+. ..++ .+..+.+++-+.+. ++-.|.--..+++.+-++.......
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 455667777788899998888888888842221 1111 11234445555543 4444444444555554422111111
Q ss_pred hhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC-C--ChhHHHHHHHHHH----
Q psy12594 205 ASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY-P--HGLVQKNAATLLR---- 275 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~-~--~~~v~~~a~~~L~---- 275 (542)
-.....+..+..+.+++ ++.+++.++.++..+...........++ .-+. +..+|-. + ..++...--.++.
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 11134466777777766 5689999999999998876555543333 3333 4444433 2 3444444333333
Q ss_pred --HHhcC-ChH--------HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhc
Q psy12594 276 --DMCKH-NLR--------LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQ 344 (542)
Q Consensus 276 --~L~~~-~~~--------~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 344 (542)
++... .|+ ... ..+.-.+-...-++.++++-++..++.++-++-...+.... -..++..|..++.
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 22211 111 111 11112222333345566777888888888887655443221 1235556666666
Q ss_pred CCChhhHHHHHHHHHHHhh
Q psy12594 345 CPHKEQLQVAAAWTLGQIG 363 (542)
Q Consensus 345 ~~~~~~v~~~a~~~L~~l~ 363 (542)
+.. --.|.....++..++
T Consensus 1109 s~~-~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SSY-LILRRASFSCLRQLV 1126 (2067)
T ss_pred chh-hhhhhhHHhhhhHHh
Confidence 532 234444444444443
No 258
>KOG1566|consensus
Probab=90.13 E-value=17 Score=34.32 Aligned_cols=203 Identities=11% Similarity=0.139 Sum_probs=134.8
Q ss_pred HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH---HHhh--hCCChHHHHHhhcCCCHHHHHHHHHHHH
Q psy12594 160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA---ESAS--DCDVIPLLIKALNNDEVNVKADAFLCLA 234 (542)
Q Consensus 160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~---~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~L~ 234 (542)
...+.++|.+..+++.+..-+-+.+..++.+..|+-...-..+ ...+ ....+..|+.--.+ .+++.-.+-..|.
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3556678889999999998888888888888888765332111 1111 12223333333221 3555555555555
Q ss_pred HHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc-CChHHHHHHHhc-C-C-HHHHHHhhhcCCccch
Q psy12594 235 DIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK-HNLRLANLVVLA-G-G-LDGLLRLIDCNGGYNS 309 (542)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~-~-~-i~~Lv~lL~~~~~~~~ 309 (542)
...++. ...+.+....-.. .....+.+.-++...|..++..+.. |....++.+... . . .+.--.++.+.+.-.+
T Consensus 151 Ecirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 151 ECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence 555554 4677777777778 8888888888999999999887754 434444433321 1 2 3336677888888899
Q ss_pred HHHHHHHhHhhcCChH---HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594 310 LPAIMALGYMSAQSEQ---IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365 (542)
Q Consensus 310 ~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 365 (542)
..+...+|.+-.+.+. ..+.+.+...+..++.+|+..+ ..+|.+|-....-..++
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdks-kniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKS-KNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCcc-ccchHHHHHHHHHHhcC
Confidence 9999999998754332 2344445578999999999865 48999998887777654
No 259
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=89.89 E-value=3.7 Score=35.80 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCCCchH------HHH------hCCchH-HHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHH
Q psy12594 15 RARLCFVQTMSAFADKPSTIH------FLK------DLNVVD-LIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEV 80 (542)
Q Consensus 15 ~~r~~~~~~l~~l~~~~~~~~------~l~------~~g~i~-~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i 80 (542)
|.|..++.+|..+++.-+-|. .+. ..+.-+ .+--++.+.++.+|..|+.++..|. +. ...-...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL--~gsk~~L~~A 78 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALL--EGSKPFLAQA 78 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHH--HccHHHHHHH
Confidence 357777888877777522221 111 222333 4445567889999999999999999 54 2211111
Q ss_pred Hhc-------------------CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh-H-hhcCChHHHHhhhcCCC
Q psy12594 81 LER-------------------NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG-L-IEDKDLDSIISSLHDFD 138 (542)
Q Consensus 81 ~~~-------------------~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~g~v~~Lv~lL~~~~ 138 (542)
.+. ..-..|+..|.. .+.......+.++..+....|..+- . .-...+..+..++.+.|
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 111 112233334554 4577778888999998887766554 1 11134444556667889
Q ss_pred HHHHHHHHHHHHHhhcCC
Q psy12594 139 PDTRANAALALGGLAKDN 156 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~ 156 (542)
+.++..++.+++.+....
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 999999999998887543
No 260
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.70 E-value=2.1 Score=36.92 Aligned_cols=112 Identities=22% Similarity=0.252 Sum_probs=73.1
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc--CChHHHHhhhcCCC-HHHHHHHHHHHHHhh---cCChH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED--KDLDSIISSLHDFD-PDTRANAALALGGLA---KDNKH 158 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~---~~~~~ 158 (542)
....+..+|++.++.-|-.++..+..++...+. ..+.+. ..+..++..|+.++ +.+.+.++.+|..+. .+.++
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445677788888888888888888887755421 113222 35778888888766 677888888888776 45566
Q ss_pred HHHHHHHc---CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 159 FAERIVQC---GALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 159 ~~~~i~~~---g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
..+.+... ++++.+++++++ ......++.+|..+....|
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 55555444 345555555554 4566677777777665443
No 261
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=89.26 E-value=1.7 Score=41.00 Aligned_cols=159 Identities=14% Similarity=0.013 Sum_probs=85.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc--hHH-HHHhhcC----CChhHHHHHHHHHHHHhcCChHH
Q psy12594 212 PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA--TTL-AVEHLTY----PHGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 212 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~-L~~lL~~----~~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
..+..++...+.+-+-.++..+.-+..+. .....+.... +.. +..++.. ..+..+..+++++.|+..+....
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHP-PASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCH-CHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCc-cHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 33444555444455555666665554443 3333333221 233 3333332 36778889999999998776555
Q ss_pred HHHHHhcC-CHHHHHHhhhcC----CccchHHHHHHHhHhhcCChHHH-HHHHhhCchHHHHH-hhcCCChhhHHHHHHH
Q psy12594 285 ANLVVLAG-GLDGLLRLIDCN----GGYNSLPAIMALGYMSAQSEQIA-EQIIELQGVGSLQT-ILQCPHKEQLQVAAAW 357 (542)
Q Consensus 285 ~~~~~~~~-~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~-ll~~~~~~~v~~~a~~ 357 (542)
...+.... .+...+..+... +..++.++...+.|++....... ..-.....+..+.+ +.....+++....++-
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 44333322 233333333333 56788888889998874211110 00011124555666 3444356788889999
Q ss_pred HHHHhhcCChHHHH
Q psy12594 358 TLGQIGKHSVDNVT 371 (542)
Q Consensus 358 ~L~~l~~~~~~~~~ 371 (542)
++|++...++....
T Consensus 225 AlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHCCSHHHHH
T ss_pred HHHHHhccChhHHH
Confidence 99999866654433
No 262
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=89.19 E-value=19 Score=33.64 Aligned_cols=213 Identities=17% Similarity=0.133 Sum_probs=121.8
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcC--CCHHHHHHHHHHHHHhhcCC---hHHHHHH
Q psy12594 89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHD--FDPDTRANAALALGGLAKDN---KHFAERI 163 (542)
Q Consensus 89 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~---~~~~~~i 163 (542)
|=..|.++++.+|..++.+|..+...-+... ....-+..|++.+.+ .|......++.++..+.... ++....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~- 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVK- 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHH-
Confidence 4456788999999999999999765433211 111223444444322 24444444466666665322 121111
Q ss_pred HHcCChHHHHHhcc--CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC
Q psy12594 164 VQCGALPPLVQILA--SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 164 ~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~ 240 (542)
++..+.+-.. +-....|..+...|..+..+..+.... .....+..+++.+. ..||+-.-.+...+..+...-
T Consensus 81 ----i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 81 ----ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred ----HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 1222222222 122677888888898888743322222 22456778888887 458887777777777666543
Q ss_pred hhhHHHHHhhchHH-HHHhhc--------CC--Ch--hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCcc
Q psy12594 241 PSLASTIADGATTL-AVEHLT--------YP--HG--LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY 307 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~--------~~--~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 307 (542)
+ . ....+ +.+.+. .+ |+ -.++.....|++.-...+..+ .-.+|.|++-|.++.+.
T Consensus 156 ~-~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 156 D-I------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPS 223 (262)
T ss_pred c-c------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcH
Confidence 2 1 12233 443332 11 22 234444455555444455443 35788999999999999
Q ss_pred chHHHHHHHhHhhc
Q psy12594 308 NSLPAIMALGYMSA 321 (542)
Q Consensus 308 ~~~~a~~~L~~l~~ 321 (542)
++..++.+|...+.
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.02 E-value=2.5 Score=35.37 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=62.3
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|.+.++.++..|+..|..+...........+...+++..|++++.. .++.++...+..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4566777888899999999999999999943347888888888999999999987 789999999999988763
No 264
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=88.78 E-value=25 Score=34.32 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=111.7
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHc-CC-hHHHHHhccCC-----C--------HhHHHHHHHH
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAK-DNKHFAERIVQC-GA-LPPLVQILASP-----Q--------LSLKHAAAFA 190 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~-g~-i~~L~~ll~~~-----~--------~~~~~~a~~~ 190 (542)
++.+.+.|+...+.+...++..|..+.. ......+.+.+. +. .+.+.+++... . +++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888888888888899999999997 776777777665 32 44566666321 1 1777777765
Q ss_pred HHH-HhcCCHHHHHHhhh-CCChHHHHHhhcCCCHHHHHHHHHHHHH-HhcCC---hhhHHHHHhhchHH-HHHhhcCCC
Q psy12594 191 LDG-IVKHSPELAESASD-CDVIPLLIKALNNDEVNVKADAFLCLAD-IAKDS---PSLASTIADGATTL-AVEHLTYPH 263 (542)
Q Consensus 191 L~n-l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~-l~~~~---~~~~~~~~~~~~i~-L~~lL~~~~ 263 (542)
+.. +...++..+..+.+ .+.+..+.+-+..+++++....+.+|.. +..+. ...+-.+.....+. |..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 544 44556667776664 4567888888888888999999888884 44443 12334556677888 999888777
Q ss_pred h----hHHHHHHHHHHHHhcCCh
Q psy12594 264 G----LVQKNAATLLRDMCKHNL 282 (542)
Q Consensus 264 ~----~v~~~a~~~L~~L~~~~~ 282 (542)
+ .+...+-..|..+|....
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 7 899999999999986543
No 265
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.98 E-value=3.4 Score=34.27 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=60.8
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~ 113 (542)
.++..+.+-|++.++.++..|+..|..+...........+...+++..+++++.. .++.++...+..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999943348888889889999999999963 468999999988888763
No 266
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.75 E-value=3.5 Score=34.47 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=61.7
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|++.++.++..|+..|..+...........+...+++..|++++. ..++.++..++.++...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 566778888899999999999999999994334778888888999999999987 4678999999999888763
No 267
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.23 E-value=4.4 Score=33.46 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=60.1
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc---CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK---QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~---~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|++.+|.++..|+..|..+.....+.....+.....+..+++++.. .++.++..++.++...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999943336677888777888889999875 468999999999988764
No 268
>KOG2611|consensus
Probab=87.19 E-value=35 Score=34.28 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=89.6
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhccC-----CH--HHHHHHHHHHHHHhcCCh
Q psy12594 46 IVPLLADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLTKQ-----NK--HYKKTALHMLTCVAQQDE 116 (542)
Q Consensus 46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~~~-----~~--~~~~~a~~~L~~l~~~~~ 116 (542)
+..+++......|..|+...-+++...+ ..+++.+.+.=+++.+-+++.+. .+ -.+.-++.+|...|+..
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p- 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP- 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh-
Confidence 4566677778889999999999994444 44566677777777777777641 12 33455666777777554
Q ss_pred hhhh---HhhcCChHHHHhhhcCC-CH------HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC
Q psy12594 117 RCAG---LIEDKDLDSIISSLHDF-DP------DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ 180 (542)
Q Consensus 117 ~~~~---~~~~g~v~~Lv~lL~~~-~~------~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~ 180 (542)
+... ++ +.+|.|...+... |+ .+...+-.+|..++...+. ...++..|+++.+.++-.-++
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCC
Confidence 3322 33 4688888888643 22 3667788899999886444 688889999999998766544
No 269
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=87.00 E-value=18 Score=31.90 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=91.1
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV 164 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 164 (542)
.++.++++..+++..++..|+.++..+....=- .-...+|.++.+..++++.++..|...+..+....+.....-.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv----nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLV----NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC----ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 567888888889999999999999887643100 0113689999999999999999999999999876655444433
Q ss_pred HcCChHHHHHhc---cCCC-HhH---HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--------CHHHHHHH
Q psy12594 165 QCGALPPLVQIL---ASPQ-LSL---KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--------EVNVKADA 229 (542)
Q Consensus 165 ~~g~i~~L~~ll---~~~~-~~~---~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~~~~~a 229 (542)
..| +..-.++- ..+. ... ......-+..+...+...+..++ ..+++.+... .+.-....
T Consensus 85 ~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 85 SEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhccccccccchhHHHHH
Confidence 334 33222222 1111 111 34444555566665566666554 5555555432 33445556
Q ss_pred HHHHHHHhcCC
Q psy12594 230 FLCLADIAKDS 240 (542)
Q Consensus 230 ~~~L~~l~~~~ 240 (542)
.++.-||+.-+
T Consensus 159 ~Fla~nLA~l~ 169 (187)
T PF12830_consen 159 LFLAENLATLP 169 (187)
T ss_pred HHHHHHHhcCC
Confidence 66666666543
No 270
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=86.80 E-value=37 Score=34.21 Aligned_cols=255 Identities=12% Similarity=0.071 Sum_probs=137.7
Q ss_pred HHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCC-
Q psy12594 60 AALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD- 138 (542)
Q Consensus 60 ~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~- 138 (542)
.+-..|.++......+.....++...+..|+.++.++++.-|.....+|.++-..-...+.++.......+.+.+....
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc
Confidence 3445666665211111123334556778899999999999999999999997544445555444455566666665443
Q ss_pred HHHHHHHHHHHHHhhcCCh----HHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHH
Q psy12594 139 PDTRANAALALGGLAKDNK----HFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPL 213 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~----~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~ 213 (542)
..-....+..++.+..+.. +.-..+. ...++-+.+.+. ......-..++..+...++.....++ ..
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~fl----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~ 259 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQFL----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KG 259 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHHHH----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HH
Confidence 4444566777777775422 1111222 233344445443 33344445566666665665554443 44
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh--
Q psy12594 214 LIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVL-- 290 (542)
Q Consensus 214 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-- 290 (542)
+++.--..+..-....+.-+..+...-+...-.-+...+.. +..++.+.+..|.+.|+..+. ++.....+.+
T Consensus 260 llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~li~~~~ 334 (409)
T PF01603_consen 260 LLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLSLISQNS 334 (409)
T ss_dssp HHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHHHHHCTH
T ss_pred HHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHHHHHhCh
Confidence 44444445555444555556666554332222223345666 778888888888888775432 2222222211
Q ss_pred cCCHHHHHHhhhc-----CCccchHHHHHHHhHhhcCChHHHH
Q psy12594 291 AGGLDGLLRLIDC-----NGGYNSLPAIMALGYMSAQSEQIAE 328 (542)
Q Consensus 291 ~~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~ 328 (542)
..++|.+..-+.. -+..++..|..++..+..-++....
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence 1245555555433 3556888888888888777666544
No 271
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=86.74 E-value=48 Score=35.37 Aligned_cols=349 Identities=10% Similarity=0.059 Sum_probs=178.9
Q ss_pred hcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHH
Q psy12594 27 FADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTAL 105 (542)
Q Consensus 27 l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~ 105 (542)
+-+.+...+.+.+.=+++.+++..++..--.+..|+..+..+. .+ ++. -.-....+....++.+.+..++..|+
T Consensus 446 ~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~e--eDfkd~---~ill~aye~t~ncl~nn~lpv~ieAa 520 (970)
T COG5656 446 FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIE--EDFKDN---GILLEAYENTHNCLKNNHLPVMIEAA 520 (970)
T ss_pred HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHH--Hhcccc---hHHHHHHHHHHHHHhcCCcchhhhHH
Confidence 3344555555555666677777777777788888998888886 44 222 12233566677788887788999999
Q ss_pred HHHHHHhcCChhhhhHhh--cCChHHHHhhhcCCCHHHHHHHHHHH-HHhhcCChHHHHHHHHcCChHHHHH----hccC
Q psy12594 106 HMLTCVAQQDERCAGLIE--DKDLDSIISSLHDFDPDTRANAALAL-GGLAKDNKHFAERIVQCGALPPLVQ----ILAS 178 (542)
Q Consensus 106 ~~L~~l~~~~~~~~~~~~--~g~v~~Lv~lL~~~~~~~~~~a~~~L-~~l~~~~~~~~~~i~~~g~i~~L~~----ll~~ 178 (542)
.++.-+-.+...+.++.+ .+.++.|+.+-+..+.+....+...+ ...+..-..+...+.. ..+..+++ ++..
T Consensus 521 lAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~en 599 (970)
T COG5656 521 LALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLEN 599 (970)
T ss_pred HHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcC
Confidence 998887766533333322 24566666666655544433333322 2222222222222221 12333333 3332
Q ss_pred CC------HhHHHHHHHHHHHHhc------CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy12594 179 PQ------LSLKHAAAFALDGIVK------HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246 (542)
Q Consensus 179 ~~------~~~~~~a~~~L~nl~~------~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 246 (542)
++ .+-+.+|.+.|..+.. ..+..-+. .+....|.+--.+.+.-.+.-..|+..+-+..--..+.-.
T Consensus 600 s~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p- 677 (970)
T COG5656 600 SSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP- 677 (970)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh-
Confidence 21 3445666666665543 11222222 2234455555566666666777777776554322211111
Q ss_pred HHhhchHH-HHHhhcCCC-hhHHHHHHHHHHHHhcCC-hHHHH-HHHhcCCHHHHHHhhhcCCc--cchHHHHHHHhHhh
Q psy12594 247 IADGATTL-AVEHLTYPH-GLVQKNAATLLRDMCKHN-LRLAN-LVVLAGGLDGLLRLIDCNGG--YNSLPAIMALGYMS 320 (542)
Q Consensus 247 ~~~~~~i~-L~~lL~~~~-~~v~~~a~~~L~~L~~~~-~~~~~-~~~~~~~i~~Lv~lL~~~~~--~~~~~a~~~L~~l~ 320 (542)
.--|+.+ +.+++.+.. ......+.-++.|+.... .+..+ .....-..+.....+.+++. .-...+++.+-.++
T Consensus 678 -imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~ 756 (970)
T COG5656 678 -IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLI 756 (970)
T ss_pred -hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHH
Confidence 1235666 666666665 356667777888876443 11111 00001112233344444443 33455666555544
Q ss_pred cCChH-HHHHHHhhCchHHHHHhhcCC------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcC
Q psy12594 321 AQSEQ-IAEQIIELQGVGSLQTILQCP------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389 (542)
Q Consensus 321 ~~~~~-~~~~~~~~~~l~~L~~ll~~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~ 389 (542)
-.-.+ .-. .-+|.+.+...++ .........--.+.|+.....+..+.+-+.|.+.......-+.
T Consensus 757 Ln~rd~Ll~-----qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ 827 (970)
T COG5656 757 LNIRDELLS-----QYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQ 827 (970)
T ss_pred HHccchhHH-----hhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence 21111 111 1233333332211 1122233333456677677777788888889888887766654
No 272
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.68 E-value=28 Score=32.57 Aligned_cols=172 Identities=14% Similarity=0.080 Sum_probs=94.4
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-------ChHHHHHHHHcCChHHHHHhccCCC----HhHHHHHHHHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKD-------NKHFAERIVQCGALPPLVQILASPQ----LSLKHAAAFALDGI 194 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~nl 194 (542)
+.+.+++.+.+.. .-+.++..|..+... .++.+-.+.=.+.+|.++.-+.+++ ......++..|..+
T Consensus 65 lq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 65 LQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred HHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence 3344445555443 334456666666532 1111222222245777777777766 13445566777777
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhc-C---CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHH
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALN-N---DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKN 269 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~-~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~ 269 (542)
|.... ...+..++.... . +..+....++..|..-.. |+. +...+. |+.+|.++.+.++..
T Consensus 143 a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 143 AEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHH
Confidence 75211 222333333322 2 234455555555543211 111 125566 999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594 270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM 319 (542)
Q Consensus 270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 319 (542)
+..+|..+-.+.+-... ...+.+.++.++++.+.. ..|+.+|.++
T Consensus 208 ~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred HHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 99999999766432222 345678888888877654 3455555444
No 273
>KOG0891|consensus
Probab=86.08 E-value=15 Score=44.98 Aligned_cols=268 Identities=17% Similarity=0.136 Sum_probs=139.5
Q ss_pred hhhcCCChHHHHHHHHHHHHhHccCChHHHHHH----H--hcCcHHHHHHh-hccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 48 PLLADKVPSIQHAALATLGKLMCAKHVDIRQEV----L--ERNLVALVLKD-LTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 48 ~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i----~--~~~~l~~Lv~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
..+...+++++..+...+..+. ......... . ....+..+..+ +.+.++.++......+. ....+.
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll--~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~ 560 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELL--KYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQ 560 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHH--hhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhh
Confidence 3445567777777766666666 332110000 0 11122222222 12344554444433332 111111
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~ 200 (542)
....+.+..+...+.++.-.++..+...+++++..+|.+.-.......+..+-.+..+.-......+..-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 33445556666667777788888888889989887775444333333333333333333333344444434433333333
Q ss_pred HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHh
Q psy12594 201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMC 278 (542)
Q Consensus 201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~ 278 (542)
.....+ ...+..+...+.+.+..+...+..++..||...........+ ..++ +.+.+.+. +..-+..+.+++.++.
T Consensus 641 ~i~~~v-~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 641 LISPYV-GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHHhhc-CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 333333 344466666777778888889999999999876433333333 4555 56666554 5666778888998887
Q ss_pred cCChHHHHH-HHhcCCHHHHHHhhhcCC-ccchHHHHHHHhHhhcCCh
Q psy12594 279 KHNLRLANL-VVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQSE 324 (542)
Q Consensus 279 ~~~~~~~~~-~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~ 324 (542)
...--.... .....++..++..+.... ..++..++..++++...++
T Consensus 719 s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 719 SSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP 766 (2341)
T ss_pred cccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence 543211110 011123334444444433 2366667777776554333
No 274
>KOG0413|consensus
Probab=84.91 E-value=5.9 Score=42.94 Aligned_cols=127 Identities=16% Similarity=0.230 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 217 (542)
+.++..+.-+|++++-......+. .+|.|++-|...+ ..+|.+..-+++.+|.+.. .++ ...+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~-d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT-DRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH-HHhhHHHHHH
Confidence 467888888999999755554443 3888998887544 6677777777787877432 222 4567999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594 218 LNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--AVEHLTYPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 218 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L~~lL~~~~~~v~~~a~~~L~~L~~~ 280 (542)
|.++++-+|+++.-.|.+|....- .+ =.|.+- .+.-|-+.+++++..+-.++..+-..
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~--vK---w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGI--VK---WNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhh--hh---cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999976532 11 123222 45555567889999998888877643
No 275
>KOG1993|consensus
Probab=84.40 E-value=64 Score=34.75 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=173.1
Q ss_pred hHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCC---hhhhhHhhcCChHH
Q psy12594 55 PSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQD---ERCAGLIEDKDLDS 129 (542)
Q Consensus 55 ~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~---~~~~~~~~~g~v~~ 129 (542)
..+|...+..++...+.+. .+.+... ...++.++++. +..++..++..+.-+..+- ++.-.-.-......
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~-----Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~ 575 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKPLL-----YCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVL 575 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHHHH-----HHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHH
Confidence 4567777778888875444 4554443 34677888876 5677788888888776442 22212112345555
Q ss_pred HHhhhcCC-CHHHHHHHHHHHHHhhcCChHHH-HHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594 130 IISSLHDF-DPDTRANAALALGGLAKDNKHFA-ERIVQC-GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS 206 (542)
Q Consensus 130 Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 206 (542)
+..+++.- .-+.|...+..|+.+.....+.. .....- ..+|.|.+--+ +++-+|-+.+.+|.|+...-....
T Consensus 576 lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS---- 650 (978)
T KOG1993|consen 576 LFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQS---- 650 (978)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCC----
Confidence 66666543 24556666666666553222211 111110 11233332222 346678888889999876211111
Q ss_pred hCCChHHHHHhhc---CC-C---HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH-HH
Q psy12594 207 DCDVIPLLIKALN---ND-E---VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR-DM 277 (542)
Q Consensus 207 ~~~~i~~L~~ll~---~~-~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~-~L 277 (542)
...-+.+...+. ++ + .-+.+.+...-...-...+.....+. +.+| +...+....+.++ .++.++. +.
T Consensus 651 -~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYi 726 (978)
T KOG1993|consen 651 -FEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYI 726 (978)
T ss_pred -ccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHH
Confidence 112233333332 22 2 22445554443333333333333333 4566 6666665544333 2233322 22
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhh-cCCChhhHHHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTIL-QCPHKEQLQVAAA 356 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~ 356 (542)
--.++.... ....|++..+..++.+-..+-....+.++..+...++ ........++++.+..-+ ...+.+.+-..-+
T Consensus 727 lLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl 804 (978)
T KOG1993|consen 727 LLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYL 804 (978)
T ss_pred hhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHH
Confidence 222333222 2234667778888877666666667777776666555 333445556777765444 3333356666677
Q ss_pred HHHHHhhcCChHHHHHHHHc-C--------ChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 357 WTLGQIGKHSVDNVTALCEE-N--------VLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 357 ~~L~~l~~~~~~~~~~l~~~-~--------~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
..++.+.-.+++....++.. . .+..-+.+..+- ++++-|+--+-|+..+..
T Consensus 805 ~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I-~~~k~rKl~~LalsSll~ 864 (978)
T KOG1993|consen 805 LVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHI-NHPKDRKLNTLALSSLLR 864 (978)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccC-CCHHHhhHHHHHHHHHhc
Confidence 77778777788766666542 1 111112222222 244566656666666653
No 276
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.31 E-value=28 Score=30.62 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=89.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy12594 210 VIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLV 288 (542)
Q Consensus 210 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 288 (542)
.++.++++..+++..++..|+..+.-+.+.+--... ..+| |+.+..++++.++..|...+..+....+.....-
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 346777788889999999999999988776432222 5788 9999999999999999999999987666554432
Q ss_pred HhcCCHHHHHHhhhc--CCcc--c---hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-------hhhHHHH
Q psy12594 289 VLAGGLDGLLRLIDC--NGGY--N---SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-------KEQLQVA 354 (542)
Q Consensus 289 ~~~~~i~~Lv~lL~~--~~~~--~---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~ 354 (542)
.. .++..-..+-.. ++.. . ....+..+..+..++...+..+ +..|++.+.... ...-...
T Consensus 84 ~~-~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 84 YS-EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HH-HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 22 233333333322 1111 1 4455556666666555555544 344444444321 2233445
Q ss_pred HHHHHHHhhc
Q psy12594 355 AAWTLGQIGK 364 (542)
Q Consensus 355 a~~~L~~l~~ 364 (542)
..++.-|++.
T Consensus 158 ~~Fla~nLA~ 167 (187)
T PF12830_consen 158 LLFLAENLAT 167 (187)
T ss_pred HHHHHHHHhc
Confidence 6666666654
No 277
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=83.80 E-value=30 Score=35.95 Aligned_cols=172 Identities=17% Similarity=0.196 Sum_probs=99.9
Q ss_pred cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-----------cCCHHHHHHHHHHHHHH--hc-CCh
Q psy12594 51 ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-----------KQNKHYKKTALHMLTCV--AQ-QDE 116 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-----------~~~~~~~~~a~~~L~~l--~~-~~~ 116 (542)
.+.+..+...|-..|.++. .. +-+...+..|+.+.. ..++.+|...+..|.+- +. ..+
T Consensus 247 ad~~~~V~~~ae~~LKr~~--~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~ 318 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLS--VS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFP 318 (501)
T ss_pred eCCcchHHHHHHHHHhhcC--CC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCc
Confidence 4556788888999999998 33 112224445555433 24567777777776662 11 122
Q ss_pred hhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHH---HHhhcCC-hHHH---HHHHHcCChHHHHH----hccCCCHhH
Q psy12594 117 RCAGLIEDKDLDSIISSLHDF--DPDTRANAALAL---GGLAKDN-KHFA---ERIVQCGALPPLVQ----ILASPQLSL 183 (542)
Q Consensus 117 ~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L---~~l~~~~-~~~~---~~i~~~g~i~~L~~----ll~~~~~~~ 183 (542)
..+..+...+.+. +..++..++..+ ....... +... ...+..++.|.+-. --...+..+
T Consensus 319 --------~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 319 --------NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIEL 390 (501)
T ss_pred --------cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHH
Confidence 2333344444444 455665655555 3333222 2211 22223344444410 011235789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594 184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 184 ~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
|..+..+|+.|+...|.... -+.+.+..|..-|.+++++++...-.+|..++..-
T Consensus 391 R~~aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred HHHHHHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999997665431 12455677777777888999999999999887643
No 278
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=83.76 E-value=36 Score=31.42 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHH--------HHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q psy12594 98 KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPD--------TRANAALALGGLAKDNKHFAERIVQCGAL 169 (542)
Q Consensus 98 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~--------~~~~a~~~L~~l~~~~~~~~~~i~~~g~i 169 (542)
.....+++..|+.+-. ..+.+.++++++.++.. +-+....++..++. |-+
T Consensus 56 ~~~~~~a~~LLaq~re----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~ 113 (249)
T PF06685_consen 56 YNLHFYALYLLAQFRE----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDI 113 (249)
T ss_pred hHHHHHHHHHHHHHhh----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCH
Confidence 3445566666666542 34789999999765521 12222233333333 457
Q ss_pred HHHHHhccCCC--HhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594 170 PPLVQILASPQ--LSLKHAAAFALDGIVKHSPELAESAS 206 (542)
Q Consensus 170 ~~L~~ll~~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~ 206 (542)
+.|.+++.+++ .-+|..|+.+|..++..++..|..++
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 77888888875 78999999999999998888888776
No 279
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.73 E-value=7.2 Score=32.15 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=58.9
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC--HHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN--KHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~--~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|++.+|.++..|+..|..+.....+.....+...+++..|+.++.... +.++..++.++...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 455667788889999999999999999994334778888888899999999888633 4488888888888763
No 280
>KOG1525|consensus
Probab=83.51 E-value=95 Score=36.03 Aligned_cols=167 Identities=11% Similarity=-0.001 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc
Q psy12594 225 VKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC 303 (542)
Q Consensus 225 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~ 303 (542)
++...-..+..|....+... .+++| |-.-|...++.+|..|...++.+......... -.........+.-+.+
T Consensus 238 ~~~~~he~i~~L~~~~p~ll-----~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D 311 (1266)
T KOG1525|consen 238 LKIKYHELILELWRIAPQLL-----LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFND 311 (1266)
T ss_pred hhhHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhcc
Confidence 44444445555554433222 37888 99999999999999999999998755433221 0012334455566667
Q ss_pred CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q psy12594 304 NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383 (542)
Q Consensus 304 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~ 383 (542)
....+|..++....+.-..++........ -..+.. ...++.++.....++... .- ......+... .+..+.
T Consensus 312 ~~~~vR~~~v~~~~~~l~~~~~~~~~~~~----~~~l~~--~~~D~~~rir~~v~i~~~-~v-~~~~l~~~~~-ll~~~~ 382 (1266)
T KOG1525|consen 312 ISVEVRMECVESIKQCLLNNPSIAKASTI----LLALRE--RDLDEDVRVRTQVVIVAC-DV-MKFKLVYIPL-LLKLVA 382 (1266)
T ss_pred CChhhhhhHHHHhHHHHhcCchhhhHHHH----HHHHHh--hcCChhhhheeeEEEEEe-eh-hHhhhhhhHH-HHHHHH
Confidence 77889998888887776666655443221 111111 112333433222212111 11 1122222223 666667
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 384 SKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 384 ~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
..+.+.. ..||+.|...|..+-.
T Consensus 383 eR~rDKk--~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 383 ERLRDKK--IKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHhhhh--HHHHHHHHHHHHHHHH
Confidence 7777764 5899999999988854
No 281
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.24 E-value=3.9 Score=36.93 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCChhhhhHhhcC-------ChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHH-HHcCCh
Q psy12594 99 HYKKTALHMLTCVAQQDERCAGLIEDK-------DLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERI-VQCGAL 169 (542)
Q Consensus 99 ~~~~~a~~~L~~l~~~~~~~~~~~~~g-------~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i-~~~g~i 169 (542)
.-|..++.+|++++-.+.+...+...+ .+..|++++.. +++..|+.|+-.|.+++..+......+ .+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 458999999999987654444333332 45566677754 468999999999999998777665444 466889
Q ss_pred HHHHHhccCCC
Q psy12594 170 PPLVQILASPQ 180 (542)
Q Consensus 170 ~~L~~ll~~~~ 180 (542)
..|+.++.+.+
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 282
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=82.99 E-value=52 Score=39.65 Aligned_cols=264 Identities=13% Similarity=0.019 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCC---hHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCCh
Q psy12594 136 DFDPDTRANAALALGGLAKDN---KHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVI 211 (542)
Q Consensus 136 ~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i 211 (542)
+.+..+...|+..|..++... ++....-.+..++.++..++.. .+.++++..+.++.+|..... .. +.. +-
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~n-IkS-GW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NN-VKS-GW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hh-hhc-Cc
Confidence 446778888888888877321 1111111222346667776654 458999999999999887322 22 223 34
Q ss_pred HHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHh------hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhc
Q psy12594 212 PLLIKALN----NDEVNVKADAFLCLADIAKDSPSLASTIAD------GATTL-AVEHLTYP-HGLVQKNAATLLRDMCK 279 (542)
Q Consensus 212 ~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~ 279 (542)
+.+..++. +.++.+.+.+..++..+..+.- ..+.. ...+. +..+.... +.++--.|+..|++++.
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 44444443 5678888889888888775421 11110 12333 44444333 56677777777776521
Q ss_pred CCh---------------------------HHHHHH-----HhcCCHHH---HHHhhhcCCccchHHHHHHHhHhhcC-C
Q psy12594 280 HNL---------------------------RLANLV-----VLAGGLDG---LLRLIDCNGGYNSLPAIMALGYMSAQ-S 323 (542)
Q Consensus 280 ~~~---------------------------~~~~~~-----~~~~~i~~---Lv~lL~~~~~~~~~~a~~~L~~l~~~-~ 323 (542)
.-. .....+ .....+|. |..+..++..+||..|+..|..+... .
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 100 000000 00123333 33445667778999999988776532 1
Q ss_pred hHHH---HHHHhhCchHHHHHhhcCC------------------C----hhhHHHHHHHHHHHhhcCChHHHHHHHH--c
Q psy12594 324 EQIA---EQIIELQGVGSLQTILQCP------------------H----KEQLQVAAAWTLGQIGKHSVDNVTALCE--E 376 (542)
Q Consensus 324 ~~~~---~~~~~~~~l~~L~~ll~~~------------------~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~ 376 (542)
.... ...+-.+++-++...++.. + ...+.+....+|.+++.--...-..+-. .
T Consensus 1380 ~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076 1380 HLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1122224555555554321 0 0123333334444443222222222211 1
Q ss_pred CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 377 NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 377 ~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
+++..|...+..+ ++.+-+-+..+|.+|+..
T Consensus 1460 ~~l~ll~~ci~q~--n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1460 KVLMLLVSFIKRP--HQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHHHHHHHHcCc--hHHHHHHHHHHHHHHHHH
Confidence 3455555555544 467778888889988644
No 283
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.18 E-value=30 Score=30.12 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=54.9
Q ss_pred ChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594 168 ALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+|.+++-|++.+...+..|...+..+... ..+..-.++ ...+..+...|.+.++++...++.+|..|...++
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 478888888887777777777777777665 343333344 5667778888889999999999999999966544
No 284
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=81.11 E-value=2.9 Score=32.61 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHH
Q psy12594 19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQH 59 (542)
Q Consensus 19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~ 59 (542)
..++.+..++..|+.-..|++.|+++.|+.||.+++.++..
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 34788999999999999999999999999999988876654
No 285
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.85 E-value=3.3 Score=37.38 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCc-------HHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhh--HhhcC
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNL-------VALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAG--LIEDK 125 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~-------l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~g 125 (542)
.-|..|+++|++|+ ..+.+.+.+...+- +..|++.+. .+++..|+.|+..|.+++..++.... -.+.+
T Consensus 139 SPqrlaLEaLcKLs--V~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLS--VIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhh--eeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 45889999999999 66666555554443 334444555 37789999999999999998877776 35678
Q ss_pred ChHHHHhhhcCCC
Q psy12594 126 DLDSIISSLHDFD 138 (542)
Q Consensus 126 ~v~~Lv~lL~~~~ 138 (542)
.+..|+.++.+.+
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999986554
No 286
>KOG0301|consensus
Probab=79.40 E-value=88 Score=32.98 Aligned_cols=167 Identities=14% Similarity=0.127 Sum_probs=93.3
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhh----cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594 90 LKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIE----DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ 165 (542)
Q Consensus 90 v~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 165 (542)
+..+..-+.+.+.-|+.+|+-+..+......+++ ...+..++..+. .++..+..++++|.|+..+ +..++.+..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s 627 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMS 627 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHH
Confidence 3344456677888888888888776544444222 235556666665 6678888899999999875 555555543
Q ss_pred c--CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---CC--CHHHHHHHHHHHHHHhc
Q psy12594 166 C--GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN---ND--EVNVKADAFLCLADIAK 238 (542)
Q Consensus 166 ~--g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---~~--~~~~~~~a~~~L~~l~~ 238 (542)
. -++..+++.=..++..++.+.+...-|.+.- ..+.-.+.+..+.+...+. .+ +-+-....+.||++|+.
T Consensus 628 ~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 628 RLESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 3 2222333332333456666555555554431 1111112455555555544 22 33345566778888888
Q ss_pred CChhhHHHHHhhchHH-HHHhhcCC
Q psy12594 239 DSPSLASTIADGATTL-AVEHLTYP 262 (542)
Q Consensus 239 ~~~~~~~~~~~~~~i~-L~~lL~~~ 262 (542)
.++ ....+...--+. ++.-+++.
T Consensus 705 ~~~-~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 705 VDA-SVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred ccH-HHHHHHHhcCHHHHHHHHHHh
Confidence 764 333344333344 65555544
No 287
>KOG0413|consensus
Probab=79.20 E-value=8 Score=41.98 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhh
Q psy12594 182 SLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHL 259 (542)
Q Consensus 182 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL 259 (542)
.++..+.-+|+++|-...+..+. .+|.|++-|.. ....+|.+.+-+++.+|.+.....+ .-+| +...|
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d-----~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD-----RYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH-----HhhHHHHHHh
Confidence 56777888999999865555543 45889988874 4667888888889888876532222 4578 99999
Q ss_pred cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 260 TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 260 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
.++++-||+.++-.|.+|....-... +...+-+++-.+-+.++.++..|-..++.+.
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALLDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999875331111 1122334455555667777777777777665
No 288
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=78.41 E-value=86 Score=32.28 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=121.6
Q ss_pred hhhcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCC
Q psy12594 132 SSLHDF-DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCD 209 (542)
Q Consensus 132 ~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~ 209 (542)
.++... .++.|..+...|..+....... -.... ..+.+.+..+ .++--..-+.+|..|+.++.+. ..++.+
T Consensus 35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~ 107 (464)
T PF11864_consen 35 DLIDPNQPSEARRAALELLIACIKRQDSS-SGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYE 107 (464)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccc
Confidence 444444 3678888888888887543321 00111 1122223332 2333334455666677765554 235577
Q ss_pred ChHHHHHhhcCC---------------------------CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC
Q psy12594 210 VIPLLIKALNND---------------------------EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY 261 (542)
Q Consensus 210 ~i~~L~~ll~~~---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~ 261 (542)
..+.|..++... +..........+.|+.+.+....+.-.-.+++. ++.+-..
T Consensus 108 i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~ 187 (464)
T PF11864_consen 108 IGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKS 187 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Confidence 888888777421 112223333344444443322111111123333 3333222
Q ss_pred C-ChhHHHHHHHHHHHHhcCC--hHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCch
Q psy12594 262 P-HGLVQKNAATLLRDMCKHN--LRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGV 336 (542)
Q Consensus 262 ~-~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 336 (542)
. +++....++..|-.+.... |.. .++.++..|-+ ...+....+-.++.||+...... ..+
T Consensus 188 Ts~~~di~~~L~vldaii~y~~iP~~--------sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i 252 (464)
T PF11864_consen 188 TSSEDDIEACLSVLDAIITYGDIPSE--------SLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAI 252 (464)
T ss_pred cCcHHHHHHHHHHHHHHHHcCcCChH--------HHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH-------HHH
Confidence 2 3333344444444333221 111 12222332222 22255666777888887643221 345
Q ss_pred HHHHHhhcCCC-----hhhHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 337 GSLQTILQCPH-----KEQLQVAAAWTLGQIGKHSVDNVTALCEE---NVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 337 ~~L~~ll~~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
..|..+|..+. +..+..-|...++.+..+..+....-+.. -+++.+...++.++ ..+-.+....+.+++
T Consensus 253 ~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~--~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 253 RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS--PRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC--CeehHHHHHHHHHHH
Confidence 66777773211 13445567778887776653332222221 26788888888663 356667777777776
No 289
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.16 E-value=58 Score=33.88 Aligned_cols=172 Identities=12% Similarity=0.035 Sum_probs=101.4
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc--C---------CCHhHHHHHHHHHHHHhcCCHHHHH
Q psy12594 135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA--S---------PQLSLKHAAAFALDGIVKHSPELAE 203 (542)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~--~---------~~~~~~~~a~~~L~nl~~~~~~~~~ 203 (542)
.+.+.++...|-..|..+... +-+..+|..|..+.. . -++.+|...+..|..= ....
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~-------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS----~~Aa- 314 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS-------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS----VIAA- 314 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh----HHHH-
Confidence 345567777777777777643 111233555666555 2 2366776665555431 1111
Q ss_pred HhhhCCChHHHHHhhcCC--CHHHHHHHHHHH---HHHhcCChhhHHHHHhhchHH-HHHhhc--------CCChhHHHH
Q psy12594 204 SASDCDVIPLLIKALNND--EVNVKADAFLCL---ADIAKDSPSLASTIADGATTL-AVEHLT--------YPHGLVQKN 269 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L---~~l~~~~~~~~~~~~~~~~i~-L~~lL~--------~~~~~v~~~ 269 (542)
... ...+..+..-+.+. +..++..+...+ .....+.+...-......+.. +...+. ..+...|..
T Consensus 315 ~~~-~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 315 TSF-PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred hCC-ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 111 23334444445444 567777777766 555544332222222223333 445552 226789999
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
+-.+|+.|++..|.... -+.+.+..|..-|..+.++++...-.+|+.++.
T Consensus 394 aYe~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999998876531 235677888888888888888888888888864
No 290
>PRK09169 hypothetical protein; Validated
Probab=78.03 E-value=1.8e+02 Score=35.80 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHH
Q psy12594 221 DEVNVKADAFLCLADI 236 (542)
Q Consensus 221 ~~~~~~~~a~~~L~~l 236 (542)
-++.-..+++|+|+..
T Consensus 370 ~npQelANaLnALSKw 385 (2316)
T PRK09169 370 LNAQELANALNALSKW 385 (2316)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 3555566666666655
No 291
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=77.88 E-value=58 Score=30.08 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCchHHHHhhhcCC-----------ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHH
Q psy12594 40 LNVVDLIVPLLADK-----------VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHML 108 (542)
Q Consensus 40 ~g~i~~L~~lL~s~-----------~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L 108 (542)
...+|.|..+|.+. +......|+..|..+- +...++.++++++.++..+-...-..+
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r------------e~~A~~~li~l~~~~~~~~~~l~GD~~ 97 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR------------EERALPPLIRLFSQDDDFLEDLFGDFI 97 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh------------hhhhHHHHHHHHcCCcchHHHHHcchh
Confidence 35677777777531 1122334444444444 677899999999865542211111110
Q ss_pred HHHhcCChhhhhHhhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy12594 109 TCVAQQDERCAGLIEDKDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQC 166 (542)
Q Consensus 109 ~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 166 (542)
...-+..-..+-.|-++.|.+++.+++ .-+|..|+.+|..++...+..|+.+++.
T Consensus 98 ---tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 98 ---TEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY 154 (249)
T ss_pred ---HhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 000011111233466888889998876 7899999999999998887777777553
No 292
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=76.88 E-value=3.4 Score=23.09 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh
Q psy12594 351 LQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT 387 (542)
Q Consensus 351 v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 387 (542)
+|..|+++|+++ ++++ .++.|++.|+
T Consensus 1 VR~~Aa~aLg~i--gd~~---------ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQI--GDPR---------AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG---SHH---------HHHHHHHHHH
T ss_pred CHHHHHHHHHHc--CCHH---------HHHHHHHHhc
Confidence 578899999999 3454 4566666654
No 293
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.83 E-value=43 Score=27.52 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=58.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhhchHH-HHHhhcC---CChhHHHHHHHHHHHHhc
Q psy12594 210 VIPLLIKALNNDEVNVKADAFLCLADIAKDSPS-LASTIADGATTL-AVEHLTY---PHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 210 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~-L~~lL~~---~~~~v~~~a~~~L~~L~~ 279 (542)
++..|.+-++++++.++..|+.+|-.+..+... +...+.....+. ++.++.. .++.|+..++..+...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 457788888899999999999999999988755 666777778888 9999976 378999999999888764
No 294
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=75.28 E-value=42 Score=29.26 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=57.2
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-ChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQ-DERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (542)
-.+|.+++-|.......+..|...+..+... ..+...-+-...+..+-..|++.|+++...++.+|..+....+..-+.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4678888888887777778887777777655 222222233457778889999999999999999999996544444333
Q ss_pred H
Q psy12594 163 I 163 (542)
Q Consensus 163 i 163 (542)
+
T Consensus 118 L 118 (183)
T PF10274_consen 118 L 118 (183)
T ss_pred H
Confidence 3
No 295
>KOG2011|consensus
Probab=74.76 E-value=1.1e+02 Score=34.37 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhc----CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHH
Q psy12594 12 HYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA----DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVA 87 (542)
Q Consensus 12 ~~~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~----s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~ 87 (542)
++++.|..+...+.++-..-.....+.+...+..++.+|. +....+|..|..+..++. .. .+.
T Consensus 167 ~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklm--t~-----------Lv~ 233 (1048)
T KOG2011|consen 167 EWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLM--TA-----------LVS 233 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHH--HH-----------HHH
Confidence 4777788777777776665556566666666666666654 344566777766666665 11 111
Q ss_pred HHHHhhcc-CCHHH--------------HHHHHHHHHHHhcCChh-hhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHH
Q psy12594 88 LVLKDLTK-QNKHY--------------KKTALHMLTCVAQQDER-CAGLIEDKDLDSIISSLHDFDPDTRANAALALGG 151 (542)
Q Consensus 88 ~Lv~~L~~-~~~~~--------------~~~a~~~L~~l~~~~~~-~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~ 151 (542)
..+.+..+ .+..- +...+...+.......+ +..++..=.=..+|.--++-++++|..++..|+-
T Consensus 234 va~~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgi 313 (1048)
T KOG2011|consen 234 VALNLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGI 313 (1048)
T ss_pred HHHHHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHH
Confidence 11222211 11111 12222222221111111 1111111011112222345569999888777776
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH-HHHhhhCCChHHHHHhh-cCCCHHHHHHH
Q psy12594 152 LAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL-AESASDCDVIPLLIKAL-NNDEVNVKADA 229 (542)
Q Consensus 152 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~-~~~~~~~~~i~~L~~ll-~~~~~~~~~~a 229 (542)
-...-| ..+++...+..+-..|.+.+..||..++.+|..|...+... .-..+-..+=..++.+. .+.+..|+...
T Consensus 314 Wi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~ 390 (1048)
T KOG2011|consen 314 WIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVG 390 (1048)
T ss_pred HHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHH
Confidence 554333 45666666777778889999999999999999999853211 11111133334555665 34456666665
Q ss_pred HHHHHHHhcCChhhHHHHHhhchHHHHHhhcCCChhHHHHHHHHHHH
Q psy12594 230 FLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 230 ~~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
+..+..+.... .+....+.++.+++-+.++.++..+...+..
T Consensus 391 L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 391 LVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 55444332221 1111233337777777777777777766654
No 296
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=74.53 E-value=26 Score=27.01 Aligned_cols=67 Identities=25% Similarity=0.220 Sum_probs=51.8
Q ss_pred cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHH
Q psy12594 166 CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCL 233 (542)
Q Consensus 166 ~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 233 (542)
...+..|++.+..++......++..|..+.. .|.....+.+-|+...|.++-...++..+..+-..+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3557778888888888899999999999998 566777888889999888777766776665554443
No 297
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=74.52 E-value=76 Score=29.70 Aligned_cols=175 Identities=19% Similarity=0.158 Sum_probs=97.3
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC------hHHHHHHHhcCcHHHHHHhhccCC----HHHHHHHHHHHHH
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH------VDIRQEVLERNLVALVLKDLTKQN----KHYKKTALHMLTC 110 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~------~~~~~~i~~~~~l~~Lv~~L~~~~----~~~~~~a~~~L~~ 110 (542)
|..+.+.+-+.|.. ....+...|.+|+...+ .+.+-.+.-...+|.++.-+.+++ ......++..|..
T Consensus 64 Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 45556666666643 34456677777773322 112333444456777777777666 2344566677888
Q ss_pred HhcCChhhhhHhhcCChHHHHhhhcCC----CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHH
Q psy12594 111 VAQQDERCAGLIEDKDLDSIISSLHDF----DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHA 186 (542)
Q Consensus 111 l~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 186 (542)
+|... ....+..++...... ..+....++..|..-.. |+. +...+..|+.++.++.+.++..
T Consensus 142 ~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 142 VAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHH
Confidence 77432 112233333332221 12333334444443221 221 1133677889998888999999
Q ss_pred HHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADI 236 (542)
Q Consensus 187 a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 236 (542)
++.+|..+-.+-+ .+.. ...+.+.++.++++.+.. ..|+.+|-++
T Consensus 208 ~L~iL~~ll~~~d-~~~~-~~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 208 TLQILKVLLPHVD-MRSP-HGADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred HHHHHHHHhcccc-CCCC-cchHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 9999999887432 2322 446678888898875533 3444444443
No 298
>KOG2011|consensus
Probab=74.33 E-value=1.5e+02 Score=33.50 Aligned_cols=132 Identities=11% Similarity=-0.013 Sum_probs=87.0
Q ss_pred cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh--HHHHHhhchHH
Q psy12594 177 ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL--ASTIADGATTL 254 (542)
Q Consensus 177 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~ 254 (542)
++-.+++|..|+..|+--...-| ..++....+..+-..|++.+.+||..++.+|-.|...+... ...+. ...-.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFt-sRFK~ 372 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFT-SRFKD 372 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHH-HHHHH
Confidence 44568899988888887776444 35566677888889999999999999999999999875322 12222 23344
Q ss_pred -HHHhh-cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhH
Q psy12594 255 -AVEHL-TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318 (542)
Q Consensus 255 -L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 318 (542)
++.+. .+.+..|+...+..+..+.... +....-+..+..++-+.++.++.+|...+..
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc------ccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 77777 3335666665554444332111 1222335566788888888888887776643
No 299
>KOG2005|consensus
Probab=74.21 E-value=1.2e+02 Score=32.01 Aligned_cols=103 Identities=19% Similarity=0.144 Sum_probs=68.9
Q ss_pred hHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594 252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI 330 (542)
Q Consensus 252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 330 (542)
.+. +-+++..+++.+|+..=-++.-++..+|.. .+++.|-++.+..+.++..+++.++|-+..+..+.+-
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl-- 711 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL-- 711 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH--
Confidence 355 667788889999999999999999888753 4577889999999999999999999977665443221
Q ss_pred HhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594 331 IELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365 (542)
Q Consensus 331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 365 (542)
.+.+..+...--..++.-.....+.-|..+..+
T Consensus 712 --a~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKG 744 (878)
T KOG2005|consen 712 --AQMLRQLASYYYKDSKALFVVRIAQGLVHLGKG 744 (878)
T ss_pred --HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCC
Confidence 123344444443333322222344455555544
No 300
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=73.82 E-value=39 Score=32.03 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=51.0
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhc----c--------CCCHhHHHHHHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHF-AERIVQCGALPPLVQIL----A--------SPQLSLKHAAAFALD 192 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll----~--------~~~~~~~~~a~~~L~ 192 (542)
++|.++.++.+.++.+|..++.+|..+....+.. ...+.+.|..+.+-+.+ - ++...+...+..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 6899999999999999999999999998644432 23466777665544433 2 233667777777887
Q ss_pred HHhc
Q psy12594 193 GIVK 196 (542)
Q Consensus 193 nl~~ 196 (542)
.++.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7743
No 301
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=73.48 E-value=13 Score=30.93 Aligned_cols=126 Identities=18% Similarity=0.142 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh---------hhhh-H----
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE---------RCAG-L---- 121 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~---------~~~~-~---- 121 (542)
.++.+.+.++..++.+..++. ..+.++.++..+++ ++......+.+|..+...-. ..+. +
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~-----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ-----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhh-----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Confidence 456667777777773332333 34567777777766 45555566666666542211 1111 1
Q ss_pred hh--cCChHHHHhhhcCCC----HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHH
Q psy12594 122 IE--DKDLDSIISSLHDFD----PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFAL 191 (542)
Q Consensus 122 ~~--~g~v~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L 191 (542)
.+ ..+++.+.+.+.... .++...++.++......-+ ...+.+.+.++.+.+++.++ +++..|+.+|
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 11 124445555554433 7888899999998876333 36666778899999999644 4577777765
No 302
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=73.01 E-value=32 Score=32.61 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=48.2
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh-h-HhhcCChHHHHh----hhc--------CCCHHHHHHHHHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA-G-LIEDKDLDSIIS----SLH--------DFDPDTRANAALAL 149 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~-~-~~~~g~v~~Lv~----lL~--------~~~~~~~~~a~~~L 149 (542)
-++|.++.++.+.++.+|..++.+|..+....+... . +...|..+.+-+ ++. ++...+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 378899999999999999999999999987653333 2 555565444433 332 23355666777777
Q ss_pred HHhh
Q psy12594 150 GGLA 153 (542)
Q Consensus 150 ~~l~ 153 (542)
..+.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 303
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=72.45 E-value=12 Score=31.07 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=57.7
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHH---HHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKH---YKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~---~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|++.+|.++..|+..|..+.....+.....+....++..|.+++.+ .... ++..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4566778888899999999999999999943337777888888899999998875 3333 88888888887753
No 304
>KOG1410|consensus
Probab=72.03 E-value=1.4e+02 Score=31.69 Aligned_cols=314 Identities=12% Similarity=0.019 Sum_probs=155.0
Q ss_pred HHHhh-hcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594 45 LIVPL-LADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 45 ~L~~l-L~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 122 (542)
.|++- -.+.|+..|..|-.+|..++ ..+++.. ...-++.. +.+--+..|..+|.++...........
T Consensus 9 ~lCk~LY~s~D~~~R~~AE~~L~e~s--~specls---------kCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~q 77 (1082)
T KOG1410|consen 9 SLCKDLYESTDPTARHRAEKALAELS--ESPECLS---------KCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQ 77 (1082)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHc--cCHHHHH---------HHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHH
Confidence 34433 36789999999999999999 7765532 22223333 345556667777777665543222222
Q ss_pred hcCChHHHHhhhcCCC----HHHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 123 EDKDLDSIISSLHDFD----PDTRANAALALGGLAKD--NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
..++-..+++.+..+. |.+...-+..++.+... .+..+...+-.+.|..+.++++.++.+--..++.+|..+..
T Consensus 78 rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvq 157 (1082)
T KOG1410|consen 78 RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQ 157 (1082)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 2234456667776543 34444444555555521 11112333334567788888888776656666666666654
Q ss_pred CCHHHHHHhhhCCChHH------HHHhhcCC-CHHHHHHHHHHHHHHhcCCh--hhHHHHHhhchHH-HHHhhc-----C
Q psy12594 197 HSPELAESASDCDVIPL------LIKALNND-EVNVKADAFLCLADIAKDSP--SLASTIADGATTL-AVEHLT-----Y 261 (542)
Q Consensus 197 ~~~~~~~~~~~~~~i~~------L~~ll~~~-~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~-L~~lL~-----~ 261 (542)
+-. ..+...+ +..-+++. --++-..++..|.....-+- ..+. -....++. -+.++. .
T Consensus 158 emN-------~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~-~L~~~vL~L~l~Cl~FDfiGs 229 (1082)
T KOG1410|consen 158 EMN-------QADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQL-GLLMQVLKLNLNCLNFDFIGS 229 (1082)
T ss_pred Hhh-------CCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHh-hHHHHHHHHHhhhcccccccc
Confidence 210 0111110 11111111 12244444444444432110 0111 00011122 122221 1
Q ss_pred C-ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc------CChHHHHHHHhhC
Q psy12594 262 P-HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA------QSEQIAEQIIELQ 334 (542)
Q Consensus 262 ~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~~~ 334 (542)
. |+..-..+ + ...+..+...+.+...++....+.++-.+.....++.+|..++. ++.+....+. .
T Consensus 230 s~DEssed~c-----t-VQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~--~ 301 (1082)
T KOG1410|consen 230 STDESSEDLC-----T-VQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ--H 301 (1082)
T ss_pred cccccccccc-----c-eecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH--H
Confidence 1 11110000 0 01123344445566778888888888888888888888888864 2233222221 2
Q ss_pred chHHHHHhhcCCC---hhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh
Q psy12594 335 GVGSLQTILQCPH---KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT 387 (542)
Q Consensus 335 ~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 387 (542)
.+.-..+++..+. ++.--.+-|+.|+.+-.+ -+...++.-...|..++++.
T Consensus 302 Lv~Gvk~il~np~~LsD~~nyHeFCRllaRlktN--YQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 302 LVEGVKRILENPQGLSDPANYHEFCRLLARLKTN--YQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred HHHHHHHHHhCCcCCCCcchHHHHHHHHHHHHhh--hhhHhhhccCCcHHHHHHHH
Confidence 3444445555542 244456678888888322 23444444455555555554
No 305
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.42 E-value=19 Score=30.07 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=58.8
Q ss_pred CChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhc
Q psy12594 125 KDLDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~ 196 (542)
.++..|.+-+++.++.++..|+..|..+... .+.+...+....++..|++++.. .++.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3567778888889999999999988888743 34566777778889999999988 678999999998888775
No 306
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.33 E-value=25 Score=29.35 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=58.6
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhc
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCK 279 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~ 279 (542)
.++..|.+-+.++++.++..|+.+|-.+..+. ..+...+...+.+. |..++... ++.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 34577888888899999999999999988875 44777888889999 99998754 88999999988887764
No 307
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=70.69 E-value=1e+02 Score=29.65 Aligned_cols=142 Identities=12% Similarity=0.074 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhh-----------chHH-HHHhhc------CCChhHHHHHHHHHHHHhcCChH
Q psy12594 222 EVNVKADAFLCLADIAKDSPSLASTIADG-----------ATTL-AVEHLT------YPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 222 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~i~-L~~lL~------~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
.-++|..|+.++.....++++.+..+++. .... |+..|- ..|+.-...|+.+|..+..++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56789999999999998888777666541 1122 444443 22566677899999999988877
Q ss_pred HHHHHHhc--C----------CHHHHHHhhhc-----CCccchHHHHHHHhHhhcCChHHHHHHHhh-CchHHHHHhhcC
Q psy12594 284 LANLVVLA--G----------GLDGLLRLIDC-----NGGYNSLPAIMALGYMSAQSEQIAEQIIEL-QGVGSLQTILQC 345 (542)
Q Consensus 284 ~~~~~~~~--~----------~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~ 345 (542)
..+.+.+- + .++.+..+|.. .++.++..-++.|..+..+++.-...+.+. ..++.|++....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 66554322 1 35556655543 344566666778888888888877777665 478888887544
Q ss_pred CCh--hhHHHHHHHHHHHhh
Q psy12594 346 PHK--EQLQVAAAWTLGQIG 363 (542)
Q Consensus 346 ~~~--~~v~~~a~~~L~~l~ 363 (542)
.++ ..++--++..||-+-
T Consensus 211 ~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHH
Confidence 332 455655666665543
No 308
>KOG1949|consensus
Probab=69.70 E-value=1.6e+02 Score=31.45 Aligned_cols=182 Identities=17% Similarity=0.167 Sum_probs=111.2
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHh-cCChhh-----hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12594 87 ALVLKDLTKQNKHYKKTALHMLTCVA-QQDERC-----AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160 (542)
Q Consensus 87 ~~Lv~~L~~~~~~~~~~a~~~L~~l~-~~~~~~-----~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (542)
|.+.+.|+..|..+|..|+..+.++- ..+|+. ..+++ +-...+..+|.++-|.+|..|..-+..+.. .++
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s---~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITS---KFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHH---HHH
Confidence 44556677899999999999998864 222222 11222 345678899999999999998877666653 444
Q ss_pred HHHHHcCChHHHHHhc----cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594 161 ERIVQCGALPPLVQIL----ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADI 236 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll----~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 236 (542)
..+-..-+...|-... .+...++|-.....|..+.. +|..... . .-++|.+-..+.+....+|..+...|..+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~-l-e~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPL-L-EQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhH-H-HHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 4443332222222222 22346788888888887776 4433222 2 24456777778888999999999988887
Q ss_pred hcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 237 AKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
-.... . .+..---.. ++..|..++..+.+..+..+.+.+
T Consensus 330 k~vra--~-~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 330 KAVRA--A-KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred Hhhhh--h-hhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 44321 1 111111233 566666666666666565555554
No 309
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=68.08 E-value=44 Score=25.76 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=47.5
Q ss_pred hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHH
Q psy12594 82 ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANA 145 (542)
Q Consensus 82 ~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a 145 (542)
....+..|++-...+....+..++..+..+..++.....+.+-|+++.|-++-..-++..+...
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~i 91 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEI 91 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHH
Confidence 4456777777777777778889999999998877666668888999887776655566655444
No 310
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.80 E-value=15 Score=30.49 Aligned_cols=126 Identities=16% Similarity=0.190 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCC-hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC---------hHHHHH----HH
Q psy12594 266 VQKNAATLLRDMCKHN-LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS---------EQIAEQ----II 331 (542)
Q Consensus 266 v~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---------~~~~~~----~~ 331 (542)
++...+.++..++.+. |... ...++.++.++.. ++......+.+|..+...- ...... +.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 5556666666666433 2111 2345555666555 2333444455554443210 011111 11
Q ss_pred --hhCchHHHHHhhcCCCh---hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 332 --ELQGVGSLQTILQCPHK---EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 332 --~~~~l~~L~~ll~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
...++..+.+++..... ..+...++.++.....- -....+.+.+.++.+++++.++ +.+..|+.+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~~----~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQSP----ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTSC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCCH----HHHHHHHHhC
Confidence 12455566666665443 67888899999998663 2345666778999999999654 5688777664
No 311
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=66.33 E-value=2e+02 Score=31.23 Aligned_cols=139 Identities=15% Similarity=0.060 Sum_probs=89.4
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHH
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLAN 286 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~ 286 (542)
.-|.-|+.++.+.+..+.+.+-..+..+.....+- -++. |++..-+. +..+ +.+|..+ ..|..
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~s~~~----~~il~~~--~~P~~-- 68 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTNSQRA----LEILVGV--QEPHD-- 68 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcCcHHH----HHHHHhc--CCccH--
Confidence 34566788888888887777777766655443111 1233 44443332 2222 2222211 12211
Q ss_pred HHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594 287 LVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS 366 (542)
Q Consensus 287 ~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 366 (542)
...+..|-.++. ++..|..++..|+.++...+.....+.+..+++.|+..|....+..+...|+.+|..|.-.-
T Consensus 69 ----K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 69 ----KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred ----HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 122334445554 34678999999999999988888889999999999999998877778888888888886554
Q ss_pred hH
Q psy12594 367 VD 368 (542)
Q Consensus 367 ~~ 368 (542)
+.
T Consensus 143 p~ 144 (668)
T PF04388_consen 143 PS 144 (668)
T ss_pred cc
Confidence 43
No 312
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=65.01 E-value=1.7e+02 Score=30.61 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=89.5
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHh-
Q psy12594 45 LIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLI- 122 (542)
Q Consensus 45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~- 122 (542)
.++.-..+-++.+|..+...|+... .. |+.-. ...++...--.|++.+..+|.....++..++.+.+....+.
T Consensus 279 vfvsRy~Dv~d~IRv~c~~~L~dwi--~lvP~yf~---k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~ 353 (740)
T COG5537 279 VFVSRYIDVDDVIRVLCSMSLRDWI--GLVPDYFR---KILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRR 353 (740)
T ss_pred HHhhhccchhHHHHHHHHHHHHHHH--hcchHHHH---hhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4444556778899999999999988 55 44422 22355555566788889999999999999998876655211
Q ss_pred -hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 123 -EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 123 -~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
-.-.-..+++++..+..-+|..+.+.+..+..- -.++...+-.+..++-+..+.-++.....+.++|.-.
T Consensus 354 f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~l------g~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 354 FVERFKDRILEFLRTDSDCVRICSIKSLCYLRIL------GVLSSSEILIVSSCMLDIIPDSRENIVESVESICKID 424 (740)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHh------cccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 112445566666655444888877777666421 1111122445555666665555555555666666533
No 313
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=64.99 E-value=53 Score=27.38 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=56.7
Q ss_pred CchHHHHhhhc-CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHH-HHHhhcc---CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVAL-VLKDLTK---QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~-Lv~~L~~---~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|. +.++.++..|+..|..+...........+...+++.. |++++.. .+..++...+..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45566666666 4689999999999999994334788888888899997 8998863 346888888888888763
No 314
>KOG1848|consensus
Probab=64.80 E-value=1e+02 Score=35.54 Aligned_cols=224 Identities=16% Similarity=0.032 Sum_probs=117.1
Q ss_pred cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc----CC---CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594 177 ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN----ND---EVNVKADAFLCLADIAKDSPSLASTIAD 249 (542)
Q Consensus 177 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~----~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 249 (542)
..+..+++.....++.++.....+ .++ .+ -+.+.++++ .. ..++.+.+..+|.-++.+--.-...-.-
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 344577888888888888763222 122 12 333333333 22 4557777777777776653111111122
Q ss_pred hchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHH---------HHHHh-------------cC----CHHHHHHhh
Q psy12594 250 GATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLA---------NLVVL-------------AG----GLDGLLRLI 301 (542)
Q Consensus 250 ~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~---------~~~~~-------------~~----~i~~Lv~lL 301 (542)
.+.++ +...-... |..+.-.|++.++.++..-.... ...++ .+ .+..|.++.
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~ 1006 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLC 1006 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHh
Confidence 35555 55554444 77777788877777653211100 00000 01 122333344
Q ss_pred hcCCccchHHHHHHHhHhhc-CChHHHHHHHhhCchHHHHHhhcCCCh--------hhHH----HHHHHHHHHhhcCChH
Q psy12594 302 DCNGGYNSLPAIMALGYMSA-QSEQIAEQIIELQGVGSLQTILQCPHK--------EQLQ----VAAAWTLGQIGKHSVD 368 (542)
Q Consensus 302 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~--------~~v~----~~a~~~L~~l~~~~~~ 368 (542)
.++..+||..|++++..+.. +........++.-.+..++.+|.+.+. .+++ +-.+.+|+-|+.-.++
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 44555688888887777654 223333344555556666777762211 2232 2345666777666677
Q ss_pred HHHHHHHcCC--------hHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 369 NVTALCEENV--------LSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 369 ~~~~l~~~~~--------l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
+...+...+. +..+..+..+. ++++...|..++..+.
T Consensus 1087 ~fk~llnln~f~~vwe~ll~flkrl~s~~--s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEELLQFLKRLHSDI--SPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhcC--ChHhHHHHHHHHHHHH
Confidence 7776665432 23333344444 4688888888877764
No 315
>KOG0392|consensus
Probab=64.73 E-value=2.2e+02 Score=32.76 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594 139 PDTRANAALALGGLAKDNKH-FAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 217 (542)
.-+|+.++++|..+..+-.. .... .+..+.+++..+..+++.-.+..+.....--.+...... ..+++..+.-
T Consensus 143 apVre~caq~L~~~l~~~~~s~~~~-----~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~ 216 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLIKE-----TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEG 216 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhhHH-----HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 35777888888777643221 1111 255666666666544443333333221110011111111 2345777788
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhhchHH-HHHhhcCCCh--hHHHHHHHHHHHHhcCChHH---HHHHHh
Q psy12594 218 LNNDEVNVKADAFLCLADIAKDSPSLA-STIADGATTL-AVEHLTYPHG--LVQKNAATLLRDMCKHNLRL---ANLVVL 290 (542)
Q Consensus 218 l~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~-L~~lL~~~~~--~v~~~a~~~L~~L~~~~~~~---~~~~~~ 290 (542)
+.+.+.+++..|+..+.-....-.+.. ..+ ..++. +...+..-+. .-....-..+..++.+.+.. .+.-.+
T Consensus 217 L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~ 294 (1549)
T KOG0392|consen 217 LEDSDDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLE 294 (1549)
T ss_pred hhhcchHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhh
Confidence 888999999999988877765432111 111 23333 4444433322 11111112223334333111 111123
Q ss_pred cCCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594 291 AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 322 (542)
.|.+|++..++++.-..++..++..+..+...
T Consensus 295 ~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 295 VGLVPRLWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58889999999998888888888888777653
No 316
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=64.69 E-value=12 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhc
Q psy12594 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQ 388 (542)
Q Consensus 350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~ 388 (542)
.+|..|+++|+++ ++++ .++.|++.+.+
T Consensus 2 ~vR~~aa~aLg~~--~~~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQL--GDEE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHc--CCHh---------HHHHHHHHhcC
Confidence 4789999999999 4454 44556666543
No 317
>KOG0301|consensus
Probab=63.96 E-value=2e+02 Score=30.48 Aligned_cols=164 Identities=11% Similarity=0.006 Sum_probs=82.7
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHHHHHHH---HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC--
Q psy12594 134 LHDFDPDTRANAALALGGLAKDNKHFAERIV---QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC-- 208 (542)
Q Consensus 134 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-- 208 (542)
+..-.++.+-.|+.+|+-+..+.+.+....- ...++..++..+. .++..+..++++|.|+..+ +..++.+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLE 630 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 3344566666777777766654333222211 1234445555555 4578889999999999985 6555544421
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHh---hcCC--ChhHHHHHHHHHHHHhcCCh
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEH---LTYP--HGLVQKNAATLLRDMCKHNL 282 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~l---L~~~--~~~v~~~a~~~L~~L~~~~~ 282 (542)
..+..+.+.-..++..++........|.+-. ..+...+.+..+ +... +..+ |-+.....+.+|.+|+..++
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccH
Confidence 1222222222233455555544444444321 011111123333 3333 2333 34455667778888886554
Q ss_pred HHHHHHHhcCCHHHHHHhhhc
Q psy12594 283 RLANLVVLAGGLDGLLRLIDC 303 (542)
Q Consensus 283 ~~~~~~~~~~~i~~Lv~lL~~ 303 (542)
...+ +.+.-.++.+..-+++
T Consensus 708 ~~~~-~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 708 SVIQ-LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHH-HHHhcCHHHHHHHHHH
Confidence 4443 4444456666655554
No 318
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=63.52 E-value=1.4e+02 Score=28.53 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=85.3
Q ss_pred HhhhCCChHHHHHhhcC-----------------------CCHHHHHHHHHHHHHHhcCChhhH----------------
Q psy12594 204 SASDCDVIPLLIKALNN-----------------------DEVNVKADAFLCLADIAKDSPSLA---------------- 244 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~-----------------------~~~~~~~~a~~~L~~l~~~~~~~~---------------- 244 (542)
.+.+.|.+|.|-+++.. ++..++.+-++.+.++|.+.+...
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 45567888888777641 112378888999999998542111
Q ss_pred -----HHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHhcCChH--HHHHHHhcCCHHHHHHhhhcCCc---cchHH
Q psy12594 245 -----STIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMCKHNLR--LANLVVLAGGLDGLLRLIDCNGG---YNSLP 311 (542)
Q Consensus 245 -----~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~i~~Lv~lL~~~~~---~~~~~ 311 (542)
..-...|.+. +++.+... +...+...+.|+-.+.++.+. ....+.+.|.++.++..+-++.. .+...
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 1112256677 77777655 677788888888888887655 34456688999999988876543 36667
Q ss_pred HHHHHhHhhcCChHHHH
Q psy12594 312 AIMALGYMSAQSEQIAE 328 (542)
Q Consensus 312 a~~~L~~l~~~~~~~~~ 328 (542)
..-.||.+...+.....
T Consensus 164 ~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 164 NFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHCCCHHHHH
Confidence 77899999888765443
No 319
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=63.34 E-value=39 Score=28.05 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=56.8
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhccC------CCHhHHHHHHHHHHHHhc
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQILAS------PQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~------~~~~~~~~a~~~L~nl~~ 196 (542)
++..+.+-+++.++.++..|+..|-.+... .+.+...+...+++..|++++.. .++.++..++..+..-+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 567788888899999999999888888753 35577778888889999999963 458899988888877665
No 320
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.41 E-value=90 Score=25.89 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=55.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCC-C-hh--HHHHHHHHHHHHhc
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYP-H-GL--VQKNAATLLRDMCK 279 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~-~-~~--v~~~a~~~L~~L~~ 279 (542)
+..|.+-|.+.++.++..|+.+|-.+..+. +.+...+.....+. |..++... . +. |+..+...+...+.
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 477888888999999999999999998876 45667777888889 99988765 3 33 88888888776653
No 321
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=61.67 E-value=1.6e+02 Score=28.67 Aligned_cols=214 Identities=16% Similarity=0.165 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc
Q psy12594 17 RLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95 (542)
Q Consensus 17 r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~ 95 (542)
|....++|..+.. .. ....++..|.+++.. .++......+.+|.........+. ....+..+.+-+++
T Consensus 4 r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhcC
Confidence 5566777777776 22 334556667777754 466667777777777762221111 12345566666777
Q ss_pred CCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhc----CCCHHHH---HHHHHHHHHhhcCC-hHHHH-HHH
Q psy12594 96 QNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLH----DFDPDTR---ANAALALGGLAKDN-KHFAE-RIV 164 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~----~~~~~~~---~~a~~~L~~l~~~~-~~~~~-~i~ 164 (542)
..+.+|+.-+..++..... +.... -.-..+++.|++.++ ++-+..+ ..++.++..+.... +.... ...
T Consensus 73 kk~~vR~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 73 KKPPVRRAWLLCLGEALWESPNSDSL-KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNIS 151 (339)
T ss_pred CCCcHHHHHHHHHHHHHhhccCchHH-HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhh
Confidence 6666888877777776641 11111 112246666666663 2222211 11222222211100 00000 000
Q ss_pred H----cCChHHHH---HhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHH
Q psy12594 165 Q----CGALPPLV---QILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLA 234 (542)
Q Consensus 165 ~----~g~i~~L~---~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~ 234 (542)
. .+-=|.++ +++.. .+++-....+.++..+..+.+.....-.....-..++.++.++ ..++|+.|..++.
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~ 231 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALK 231 (339)
T ss_pred hhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 0 00000000 12222 2334444555566555543222111100122346677777777 8999999999999
Q ss_pred HHhcCChh
Q psy12594 235 DIAKDSPS 242 (542)
Q Consensus 235 ~l~~~~~~ 242 (542)
.+....+.
T Consensus 232 ~l~~~~~~ 239 (339)
T PF12074_consen 232 KLYASNPE 239 (339)
T ss_pred HHHHhChH
Confidence 99887764
No 322
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=60.81 E-value=1.6e+02 Score=28.21 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=86.0
Q ss_pred HHHHHHcCChHHHHHhccC-----------------------CCHhHHHHHHHHHHHHhcCCHHHHH-------------
Q psy12594 160 AERIVQCGALPPLVQILAS-----------------------PQLSLKHAAAFALDGIVKHSPELAE------------- 203 (542)
Q Consensus 160 ~~~i~~~g~i~~L~~ll~~-----------------------~~~~~~~~a~~~L~nl~~~~~~~~~------------- 203 (542)
+..+.+.|+||.|-+++.. ++..++.+-++.+.+++.++.....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 3566777888888777632 1124788889999999984422111
Q ss_pred --------HhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChh--hHHHHHhhchHH-HHHhhcCC---ChhHH
Q psy12594 204 --------SASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPS--LASTIADGATTL-AVEHLTYP---HGLVQ 267 (542)
Q Consensus 204 --------~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~-L~~lL~~~---~~~v~ 267 (542)
.--+.|.+..++..+... +...|-..+.++-.+.+..+. -+..+.+.|.++ ++..+-++ +..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 111245566666666533 556777777788888777654 344667789999 88776655 46799
Q ss_pred HHHHHHHHHHhcCChHHHH
Q psy12594 268 KNAATLLRDMCKHNLRLAN 286 (542)
Q Consensus 268 ~~a~~~L~~L~~~~~~~~~ 286 (542)
......|+.|.+.+...-.
T Consensus 162 Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred HHHHHHHHHHHCCCHHHHH
Confidence 9999999999988866544
No 323
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=60.18 E-value=96 Score=25.49 Aligned_cols=70 Identities=23% Similarity=0.229 Sum_probs=56.4
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCC-C-hhHHHHHHHHHHHHhc
Q psy12594 210 VIPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYP-H-GLVQKNAATLLRDMCK 279 (542)
Q Consensus 210 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~-~-~~v~~~a~~~L~~L~~ 279 (542)
++..|.+-+.++++.++..|+.+|-.+..+. ..+...+.....+. |..++... + +.|+..++..+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4467888888999999999999999998875 44667788888999 99998887 3 3488888888877664
No 324
>KOG1993|consensus
Probab=60.05 E-value=2.6e+02 Score=30.47 Aligned_cols=264 Identities=16% Similarity=0.159 Sum_probs=133.0
Q ss_pred HHHhhhcCC-ChHHHHHHHHHHHHhHccCC----hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhh
Q psy12594 45 LIVPLLADK-VPSIQHAALATLGKLMCAKH----VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 45 ~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~----~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
.+++++++. |-.++..++.+++.+. .+ ++.-..+. ......+.+++.. +.-+.|...+..+..+.....+.
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~v--DD~nF~~dsFlp~l-enlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVV--DDWNFSEDSFLPYL-ENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhh--hhccCChhhhhhhH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 456777776 6788889999999888 55 22222222 3344455555554 44566667777766654332222
Q ss_pred hhHhhcCChHHHHhh---hc---CCCHHHHHHHHHHHHHhhc----CChHHHHHHHHcCChHHHHHhccCCC----HhHH
Q psy12594 119 AGLIEDKDLDSIISS---LH---DFDPDTRANAALALGGLAK----DNKHFAERIVQCGALPPLVQILASPQ----LSLK 184 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~l---L~---~~~~~~~~~a~~~L~~l~~----~~~~~~~~i~~~g~i~~L~~ll~~~~----~~~~ 184 (542)
.. .....+++. |- .+.+-+|...+.+|.++.. .++.+... +-+++++--+++ .-+-
T Consensus 607 I~----P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~f------L~pVIel~~D~~sP~hv~L~ 676 (978)
T KOG1993|consen 607 IA----PYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPF------LYPVIELSTDPSSPEHVYLL 676 (978)
T ss_pred hh----HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHH------HHHHHHHhcCCCCCceeehh
Confidence 11 111122222 21 2346677777777777763 22222111 222334333322 1222
Q ss_pred HHH----HHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHH-HHhcCChhhHHHHHhhchHH-HHHh
Q psy12594 185 HAA----AFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLA-DIAKDSPSLASTIADGATTL-AVEH 258 (542)
Q Consensus 185 ~~a----~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~-L~~l 258 (542)
+.+ ...|.|.-. ....+. +.+|.+...+......++ .++..+. ++--+++... .....++.. +..+
T Consensus 677 EDgmeLW~~~L~n~~~----l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~ 748 (978)
T KOG1993|consen 677 EDGMELWLTTLMNSQK----LTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFL-NDYAFGIFKKLNDL 748 (978)
T ss_pred hhHHHHHHHHHhcccc----cCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHH
Confidence 222 224444433 222332 445777777764443333 2332222 2222332221 222356777 7788
Q ss_pred hcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCChHHHHHH
Q psy12594 259 LTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSEQIAEQI 330 (542)
Q Consensus 259 L~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~ 330 (542)
+.+-..+-....+.+...+...+| ........++++.+..-+-.. .|.+...-+.+++.+.-.+++....+
T Consensus 749 l~dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msv 821 (978)
T KOG1993|consen 749 LDDVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSV 821 (978)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHH
Confidence 877766666667777777665555 223344567777777655332 33354555556666666666554443
No 325
>KOG2005|consensus
Probab=58.96 E-value=2.5e+02 Score=29.91 Aligned_cols=283 Identities=14% Similarity=0.106 Sum_probs=138.8
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
++..|-+.+.++++.+...|+..++-..++..++. .-.+..|-+.+.+++..++..++.-|+-.-.++ ....
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~s~~ri~aIlGLglayaGs-q~e~- 487 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSSSIHRIGAILGLGLAYAGS-QREE- 487 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCCceeehHHhhhhHHhhcCC-chHH-
Confidence 45556666666666666666655544442222211 112223444555667777777766665543332 1111
Q ss_pred hhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHhccC--CCHhHHHHHHHHHHHHh
Q psy12594 122 IEDKDLDSIISSLHDFD--PDTRANAALALGGLAKD--NKHFAERIVQCGALPPLVQILAS--PQLSLKHAAAFALDGIV 195 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~nl~ 195 (542)
+...|..++.+.+ .++...|...|+.+..+ +.+....+ +..+++--.. .+.-.|-.++ .|+-+-
T Consensus 488 ----V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~i-----lqtlmekse~El~d~~~RFL~L-GL~llf 557 (878)
T KOG2005|consen 488 ----VLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSI-----LQTLMEKSETELEDQWFRFLAL-GLALLF 557 (878)
T ss_pred ----HHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHH-----HHHHHHhhhhhhhchHHHHHHH-HHHHHH
Confidence 2225666666665 45666666666666532 23322222 2222221110 1222333222 222222
Q ss_pred cCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCC---hhHHHHHH
Q psy12594 196 KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPH---GLVQKNAA 271 (542)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~---~~v~~~a~ 271 (542)
-+.. ..++....-++.-...++..+-..+...+.......-.+ +. . +.++-...+ +.-+..|+
T Consensus 558 lgkq---------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~I-q~---q~ll~~cgE~~~~~e~~~~~av 624 (878)
T KOG2005|consen 558 LGKQ---------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKI-QS---QLLLSFCGEHDADLESEQELAV 624 (878)
T ss_pred hccc---------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEe-ch---hhhhhhcCCCccchhhhccchh
Confidence 2111 223333344443344444444333333322111110000 00 2 333333332 12222344
Q ss_pred HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594 272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQL 351 (542)
Q Consensus 272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 351 (542)
-.+.-++.+.+-..+. .+..+-++++-+++.+|...=.+++-++.++|.. +++..|.++... .+.++
T Consensus 625 LgiAliAMgeeig~eM-----~lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd-~D~ev 691 (878)
T KOG2005|consen 625 LGIALIAMGEEIGSEM-----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHD-GDLEV 691 (878)
T ss_pred hhhhhhhhhhhhhhHH-----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccC-cchHH
Confidence 4444444444433332 2345567778888999998888999888887753 456666666655 56789
Q ss_pred HHHHHHHHHHhhcCChH
Q psy12594 352 QVAAAWTLGQIGKHSVD 368 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~ 368 (542)
..++..+++-+.++...
T Consensus 692 a~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 692 AMNAIFAMGLIGAGTNN 708 (878)
T ss_pred HHHHHHHhccccCCcch
Confidence 99999999999888654
No 326
>KOG0889|consensus
Probab=58.72 E-value=2.7e+02 Score=35.98 Aligned_cols=179 Identities=12% Similarity=0.031 Sum_probs=90.9
Q ss_pred CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh--CC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594 167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD--CD--VIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
+.+..++.-+.+++..+|+.+...|.+++.........+.+ .. .+|.+.+-+..-.-..+.--+.++.......+.
T Consensus 1126 ~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~ 1205 (3550)
T KOG0889|consen 1126 NVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPC 1205 (3550)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCc
Confidence 56778888888899999999999999999865222222220 00 112222222222223333333333333332222
Q ss_pred hHH---HHH----h----hchH-H-HHHhhcCC-------ChhHHHHHHHHHHHHhcCChHHHH--HHHhcCCHHHHHHh
Q psy12594 243 LAS---TIA----D----GATT-L-AVEHLTYP-------HGLVQKNAATLLRDMCKHNLRLAN--LVVLAGGLDGLLRL 300 (542)
Q Consensus 243 ~~~---~~~----~----~~~i-~-L~~lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~i~~Lv~l 300 (542)
.-. .+. . .+.- . ...+.+.. ....+..+..++.......+.... .-...+.+..++.-
T Consensus 1206 ~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~ 1285 (3550)
T KOG0889|consen 1206 LFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKS 1285 (3550)
T ss_pred ccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHH
Confidence 111 000 0 0000 0 11222111 122466666666665544332211 11235677788888
Q ss_pred hhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcC
Q psy12594 301 IDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQC 345 (542)
Q Consensus 301 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 345 (542)
+.+..+++...+..++......+...-...++.+.-+.|..+-.+
T Consensus 1286 l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~ 1330 (3550)
T KOG0889|consen 1286 LYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDH 1330 (3550)
T ss_pred HcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHh
Confidence 888888888888888877766655555555554444444444433
No 327
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.22 E-value=1e+02 Score=33.88 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=79.9
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh--Hhh
Q psy12594 46 IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG--LIE 123 (542)
Q Consensus 46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~ 123 (542)
+...+.++++..-...+.++..+........+. ....++.-..-....-..+......+|.+++..+++... +.+
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 333444556666666666666666222211111 111222222222222345566777888999888776665 556
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 124 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
.+....++.++-++++++...|...|......... .+.+-.+++..-........+.|..+..
T Consensus 523 ~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R----------~e~i~~ll~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGR----------LEAIQALLQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred cchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999988888742211 3333344443333444445555555554
No 328
>KOG0889|consensus
Probab=57.69 E-value=5.2e+02 Score=33.70 Aligned_cols=180 Identities=13% Similarity=-0.017 Sum_probs=90.7
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hc--hHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh
Q psy12594 208 CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GA--TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL 282 (542)
Q Consensus 208 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~--~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~ 282 (542)
.+.+..++.-+.+++..+|+.+..+|.+++.....-...+.. .. ..| ....+....-..+..-..++.++....|
T Consensus 1125 ~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p 1204 (3550)
T KOG0889|consen 1125 MNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGP 1204 (3550)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCC
Confidence 466777888888899999999999999998765322221111 00 011 1111222223333333333333332222
Q ss_pred -------HHHHHHHhc---------CCHHHHHHhhhcC----CccchHHHHHHHhHhhcCChHH--HHHHHhhCchHHHH
Q psy12594 283 -------RLANLVVLA---------GGLDGLLRLIDCN----GGYNSLPAIMALGYMSAQSEQI--AEQIIELQGVGSLQ 340 (542)
Q Consensus 283 -------~~~~~~~~~---------~~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~ 340 (542)
+........ ..+. +....... ....+..++.+++......+-. ...-...+.+.++.
T Consensus 1205 ~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~f 1283 (3550)
T KOG0889|consen 1205 CLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFF 1283 (3550)
T ss_pred cccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHH
Confidence 111100000 0111 11111111 1124666666666554433221 11223346677777
Q ss_pred HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcC
Q psy12594 341 TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389 (542)
Q Consensus 341 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~ 389 (542)
..+.+.+ .++...+..++.+....++..-+..+..+.-|.|.++-...
T Consensus 1284 k~l~~~~-~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~ 1331 (3550)
T KOG0889|consen 1284 KSLYKRS-SELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHN 1331 (3550)
T ss_pred HHHcCCh-HHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhh
Confidence 7777644 57888888888888776655555566655556655555543
No 329
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=57.58 E-value=79 Score=25.06 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=52.9
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh----c--cCCHHHHHHHHHHHHHHh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL----T--KQNKHYKKTALHMLTCVA 112 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L----~--~~~~~~~~~a~~~L~~l~ 112 (542)
.++..|..-|.+.++.++..|+..|-.+.....+.....+.....+..++++. . ..+..+|..+..++...+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 35667777788889999999999999999444477777787777776666531 1 246788888877776543
No 330
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=54.90 E-value=1.7e+02 Score=30.24 Aligned_cols=84 Identities=21% Similarity=0.097 Sum_probs=59.7
Q ss_pred HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC-------------ChHHHHHHHHcCChHHHHHHHhcCCC
Q psy12594 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH-------------SVDNVTALCEENVLSTLLSKITQTCV 391 (542)
Q Consensus 325 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-------------~~~~~~~l~~~~~l~~L~~ll~~~~~ 391 (542)
...+.+.+.++++.|+.+|....+..++..|+..|..+..- ..+..+.+.+...+..|++.+-....
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 44566777899999999998666678999999887777532 23455667777788888887775321
Q ss_pred ChHHHHHHHHHHHHHHhh
Q psy12594 392 SDNLKSKCKNALNILIPK 409 (542)
Q Consensus 392 ~~~v~~~a~~aL~nl~~~ 409 (542)
...-..++..+..++++
T Consensus 133 -~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 133 -GSSLVNGVSILIELIRK 149 (475)
T ss_pred -cchHHHHHHHHHHHHHh
Confidence 34556667777777755
No 331
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=53.49 E-value=15 Score=28.68 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=35.8
Q ss_pred HHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHH
Q psy12594 59 HAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKK 102 (542)
Q Consensus 59 ~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~ 102 (542)
...+..|..|+ ..|+.-..+++.|+++.|+.+|.++|.++..
T Consensus 64 d~~Ik~l~~La--~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLA--TAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHcc--CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45667888888 8888889999999999999999999877654
No 332
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=53.48 E-value=74 Score=31.18 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=60.6
Q ss_pred ChHHHHHhccCC-------CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc----------CCCHHHHHHHH
Q psy12594 168 ALPPLVQILASP-------QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN----------NDEVNVKADAF 230 (542)
Q Consensus 168 ~i~~L~~ll~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~~~~~a~ 230 (542)
++|.+++++.+. +.......+..+..|.. ++...-...=...+|.++.++- +.+..+|+.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 367777776543 34455555666666666 3333222222345677766652 12457999999
Q ss_pred HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHh
Q psy12594 231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMC 278 (542)
Q Consensus 231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~ 278 (542)
..+..+|..-...-. -....+.. +...+.++ ......-|+..|..|.
T Consensus 290 ~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 290 RLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 999999975432111 12334555 55555555 2333566666666554
No 333
>KOG1988|consensus
Probab=53.37 E-value=3.5e+02 Score=29.83 Aligned_cols=243 Identities=16% Similarity=0.072 Sum_probs=128.5
Q ss_pred hhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCC
Q psy12594 48 PLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD 126 (542)
Q Consensus 48 ~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 126 (542)
+-+++.-...+-.+...+.++. +. +.. .++ ...+-.|.+....++..+|...+++...-..+-... .--...
T Consensus 31 kGlr~~~t~eqpeavvr~~RLF--ek~Pfp--ifi-Ns~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v--~n~aE~ 103 (970)
T KOG1988|consen 31 KGLRSGKTSEQPEAVVRFPRLF--EKYPFP--IFI-NSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKV--LNGAEF 103 (970)
T ss_pred hcccccccccchHHHHHHHHHH--hhCCch--hhh-hHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhh--hhhhhh
Confidence 3455555566666777777777 32 111 111 112224555666788888888887776433332111 111234
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
+..+.....+.||.-|..++..++.++.--|+ ..-++.++..-- +++.--.+.|..+..+.+..+.+....+
T Consensus 104 lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~si 176 (970)
T KOG1988|consen 104 LRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFACSI 176 (970)
T ss_pred hheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHHHH
Confidence 44555556778899999999999888753333 244666665433 4443334556666676666443333222
Q ss_pred hhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCC
Q psy12594 206 SDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHN 281 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~ 281 (542)
...+..++... .++.+-..+.++..+..+.. ... .+.. .+.++... ..+....-+.++++++...
T Consensus 177 -----~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at-~A~-----ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs 245 (970)
T KOG1988|consen 177 -----CGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT-GAS-----RAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRS 245 (970)
T ss_pred -----HHHHHHHhhcccCCCCcchhHhHHHHHhcchhh-hhH-----HHHHHHHHHhcCCCcccceeeehhhhHHHHHHH
Confidence 23444444432 34566667777777754432 111 2333 44555544 3444444445555665322
Q ss_pred hHHHHHHHhcCCHHHHHHhhhcCC-ccchHHHHHHHhHhh
Q psy12594 282 LRLANLVVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMS 320 (542)
Q Consensus 282 ~~~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~ 320 (542)
-.. -.+-++.+.++++.+. ..++..+++.+.+++
T Consensus 246 ~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La 280 (970)
T KOG1988|consen 246 LVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLA 280 (970)
T ss_pred HHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 111 1244556666666433 335556666666665
No 334
>KOG4231|consensus
Probab=53.04 E-value=9.8 Score=38.16 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=42.6
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 134 LHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 134 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
..+.+++++.++..++++++......+..+-....-..+++++-.+.+++-+.+..++..+..
T Consensus 337 ~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 337 CAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred hcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 345679999999999999997544422222222333456677777777777888888877665
No 335
>KOG4337|consensus
Probab=52.50 E-value=3.1e+02 Score=29.07 Aligned_cols=229 Identities=14% Similarity=0.103 Sum_probs=109.2
Q ss_pred CCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHHHHHhhcCCChhHHHHHHHHHHHHhcCChHHHH
Q psy12594 208 CDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLAN 286 (542)
Q Consensus 208 ~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~ 286 (542)
..++|.|+..+..- ..+-...+...|.-.+..+.+... .....+.-+....++++++.+..+.-+..-+..+....+
T Consensus 358 ~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~--l~e~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s~~~~r 435 (896)
T KOG4337|consen 358 DEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEK--LHEQLLYWLGSADHPSEETIATLLNKRCEASISSLNSCR 435 (896)
T ss_pred hhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHH--HHHHHHHHhhccCCCcHHHHHHHHHHHhhhhhhhhHHHh
Confidence 34677777777643 334444555555555555432211 111111122334455666555544443332222222111
Q ss_pred HHHhcCCHHHHHHhhhcCCccchHHHHH-----HHhHhhcCC-----hHHHHHHHh---hCchHHHHHhhcCCChhhHHH
Q psy12594 287 LVVLAGGLDGLLRLIDCNGGYNSLPAIM-----ALGYMSAQS-----EQIAEQIIE---LQGVGSLQTILQCPHKEQLQV 353 (542)
Q Consensus 287 ~~~~~~~i~~Lv~lL~~~~~~~~~~a~~-----~L~~l~~~~-----~~~~~~~~~---~~~l~~L~~ll~~~~~~~v~~ 353 (542)
.-+ ...+..|++.+.....+ ..++. +++-+.... .....++.+ ..+++.|++.-..+..+++-.
T Consensus 436 e~v-~~iv~tlir~~~~~gve--~~~l~e~~~~ilgglt~aek~~~s~~y~~Al~N~~lPa~i~~Lle~a~sGe~p~~s~ 512 (896)
T KOG4337|consen 436 EGV-ETIVNTLIRDLTAGGVE--VRVLEELENIILGGLTFAEKFIESEDYQKALLNVILPAAIKNLLETAVSGEKPEQSM 512 (896)
T ss_pred hhH-HHHHHHHHHHhhCCCcc--cHHHHHHHHHHhccchhcccccchHHHHHHHHhccChhhHHHHHHHHhccCCcchhH
Confidence 000 01233444434333332 22232 333333211 122223222 245677777777766666777
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHH
Q psy12594 354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASIL 433 (542)
Q Consensus 354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l 433 (542)
.|..++..+-.++-.......-+.+...+..+..+. +|-.|+..|-++.-.-..+.-++.-|. ..|.+.-.+.+
T Consensus 513 ~atsAl~~f~l~si~~~~kk~~~~i~hq~~k~f~~t-----~rTlA~dIiL~~~P~~~~v~n~ll~l~-~~dqE~~~Y~l 586 (896)
T KOG4337|consen 513 RATSALAEFFLRSICQTKKKIGAPITHQLIKLFRNT-----TRTLAIDIILKCVPDHQNVANLLLTLN-PDDQEKWHYLL 586 (896)
T ss_pred HHHHHHHhcCchhhhHHHHHhcchHHHHHHHHHhcc-----hhHHHHHHHHhcCccHHHHHHHHHHhC-CChHHHHHHHH
Confidence 788788776544333233333344555566666543 555565555554322223444444555 66668888888
Q ss_pred HHHHhhCCCChhhh
Q psy12594 434 CAFAKILPCDPVAR 447 (542)
Q Consensus 434 ~~l~~ll~~~~~~~ 447 (542)
.++..+-.+.|..+
T Consensus 587 ~~i~ml~~~~p~~k 600 (896)
T KOG4337|consen 587 KAIEMLSGNKPELK 600 (896)
T ss_pred HHHHHHhccCchHH
Confidence 88887555555544
No 336
>KOG1525|consensus
Probab=52.35 E-value=4.5e+02 Score=30.86 Aligned_cols=161 Identities=8% Similarity=0.011 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594 267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 267 ~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 346 (542)
+..--..+..|....|... .+++|.|-.-|.+++..+|..|...+|.+......... --....+...+.-+...
T Consensus 239 ~~~~he~i~~L~~~~p~ll-----~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~ 312 (1266)
T KOG1525|consen 239 KIKYHELILELWRIAPQLL-----LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI 312 (1266)
T ss_pred hhHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC
Confidence 3333444445544444332 47899999999999999999999999988765333221 01113444455555553
Q ss_pred ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHH--HHHh-hCCCchhhHHhhcC-
Q psy12594 347 HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALN--ILIP-KCENPKELEQMLLG- 422 (542)
Q Consensus 347 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~--nl~~-~~~~i~~L~~lL~~- 422 (542)
. .++|.++.....++...+|........ ...++..+.++++|.....++. .... ....++.++.++..
T Consensus 313 ~-~~vR~~~v~~~~~~l~~~~~~~~~~~~-------~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR 384 (1266)
T KOG1525|consen 313 S-VEVRMECVESIKQCLLNNPSIAKASTI-------LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAER 384 (1266)
T ss_pred C-hhhhhhHHHHhHHHHhcCchhhhHHHH-------HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHH
Confidence 3 588988888888877776664443321 1222222223455543221111 1110 01123333333321
Q ss_pred --CCCHHHHHHHHHHHHhhCC
Q psy12594 423 --NVSEELLASILCAFAKILP 441 (542)
Q Consensus 423 --~~~~~v~~~~l~~l~~ll~ 441 (542)
++...|+..|...+..+..
T Consensus 385 ~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 385 LRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HhhhhHHHHHHHHHHHHHHHH
Confidence 6677888888888766644
No 337
>KOG2149|consensus
Probab=50.70 E-value=1.5e+02 Score=29.26 Aligned_cols=114 Identities=13% Similarity=0.036 Sum_probs=74.6
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV 164 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 164 (542)
-+..++..+++.+..+|..|+.-|..+....+.........+++.+..+..+.+..+|......+-.+............
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 56678888999999999999999988765544444434445777788888888888888888777775532211111111
Q ss_pred HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
-.-+++.+-..|....+++|..++..|.-+....
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 1111233334444456888888888888877644
No 338
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=50.24 E-value=39 Score=30.25 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=44.6
Q ss_pred HHHHHhhchHH-HHHhhcCC---C---------------hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC
Q psy12594 244 ASTIADGATTL-AVEHLTYP---H---------------GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN 304 (542)
Q Consensus 244 ~~~~~~~~~i~-L~~lL~~~---~---------------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 304 (542)
+..+.+.+++. ++.+|..+ . ..+...+...|..++.+++.+...+.+. ++.+...+...
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~ 113 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL 113 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh
Confidence 34555556666 66665432 1 3577889999999999998888766542 33333333332
Q ss_pred CccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594 305 GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK 364 (542)
Q Consensus 305 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 364 (542)
....-..+..++..+..++.+....+.+.. +..+++++..... ...-+..|..++.
T Consensus 114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr---~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGR---QPRYLDFLSSLCV 169 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT------------------------------------------
T ss_pred hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCC---ChHHHHHHhhhcc
Confidence 222334567777778888888887776644 8888888877322 1224444555544
No 339
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=50.14 E-value=1.9e+02 Score=25.80 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=85.2
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHH-HHHHHHHhcCChhhhhH
Q psy12594 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTA-LHMLTCVAQQDERCAGL 121 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a-~~~L~~l~~~~~~~~~~ 121 (542)
..+..+..+...+.+..|+..+.... ...+ ...++.+-..+.. .+..+.... ..++..+....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~--~~~~-------~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRR--KKLT-------EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCG--GG---------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHh--hhhh-------HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34556667777788888877776654 2100 0023344444444 445444433 44455543211
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~ 201 (542)
....+.+...++++++..|..++.++....... . ... .+..+...+.+++..+|....|+|..++..+++.
T Consensus 119 --~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~-~-~~~-----~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 119 --PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE-D-FDE-----LLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp --GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC-H-HHH-----HHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred --HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc-C-HHH-----HHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 235677788889999999988877666555431 1 111 1344555667788999999999999999988877
Q ss_pred HHHhhhC
Q psy12594 202 AESASDC 208 (542)
Q Consensus 202 ~~~~~~~ 208 (542)
....+..
T Consensus 190 v~~~l~~ 196 (213)
T PF08713_consen 190 VLEFLQK 196 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 340
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=49.54 E-value=5.4e+02 Score=30.92 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=61.0
Q ss_pred HhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCC
Q psy12594 47 VPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD 126 (542)
Q Consensus 47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~ 126 (542)
-.++.+.++.++..+......+....+.-.+ ..++..|+..+.+++..-...|+.+|..++...+..-.. -...
T Consensus 441 ~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~q-----qeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~-fa~~ 514 (1426)
T PF14631_consen 441 QSLLRSKEPSVREFGSHLYKYLFKEFDSYCQ-----QEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQP-FATF 514 (1426)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSS-HHHH-----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHH-THHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHhhccchhH-----HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHH-HHHH
Confidence 3456789999999998888888832222222 336778888887777766789999999998654333221 1224
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAK 154 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 154 (542)
+..+++.+.+-+..-......+|..++.
T Consensus 515 l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 515 LKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 4455555655543333344666666663
No 341
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=48.99 E-value=3.1e+02 Score=28.01 Aligned_cols=79 Identities=27% Similarity=0.239 Sum_probs=46.7
Q ss_pred HhHHHHHHHHHHHHhcCCHHHH-HHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHh
Q psy12594 181 LSLKHAAAFALDGIVKHSPELA-ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEH 258 (542)
Q Consensus 181 ~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~l 258 (542)
...|..|+.+|+.++..-++.. ..+. -+.|...|.+....-|..++-++...+...........-....+ |..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 4578889999999887532211 1111 12688888887777777777778777765432111100123445 7777
Q ss_pred hcCCC
Q psy12594 259 LTYPH 263 (542)
Q Consensus 259 L~~~~ 263 (542)
|..+.
T Consensus 177 L~~~~ 181 (441)
T PF12054_consen 177 LENPE 181 (441)
T ss_pred HcCCC
Confidence 77553
No 342
>KOG1791|consensus
Probab=48.64 E-value=2.8e+02 Score=32.70 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=111.2
Q ss_pred hhh-hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhccC----CCHhHHHHHHHH
Q psy12594 117 RCA-GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF-AERIVQCGALPPLVQILAS----PQLSLKHAAAFA 190 (542)
Q Consensus 117 ~~~-~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~ll~~----~~~~~~~~a~~~ 190 (542)
..+ .+++.|....+...+.+.|+.+|..|.+++...-.+-... ...-...+ +-.++.+.+. +++.+-......
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~-ll~L~~l~qng~~e~~~Rl~si~alF 1508 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFN-LLYLSCLAQNGSRESDPRLISICALF 1508 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcCCCcchhhHHHHH
Confidence 444 3778889999999999999999999988887665543331 22222222 3334444433 233332222221
Q ss_pred H---HHHhcCC-HHH---------HHHhhhCCChHHHHHhhcCCCHH---HHHHHHHHHHHHhcCChhhHHHHHhhchHH
Q psy12594 191 L---DGIVKHS-PEL---------AESASDCDVIPLLIKALNNDEVN---VKADAFLCLADIAKDSPSLASTIADGATTL 254 (542)
Q Consensus 191 L---~nl~~~~-~~~---------~~~~~~~~~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 254 (542)
. .+++... ... ....++-..+|.+-+.+.+..++ .|+.....+...-...+ ..+.....++..
T Consensus 1509 ~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~-D~ql~~~~~~~~ 1587 (1758)
T KOG1791|consen 1509 IAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCP-DYQLLQIRNIFE 1587 (1758)
T ss_pred HHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCch-hhhHHhhcCcce
Confidence 1 2222211 000 12345566788888888765443 55555555555555554 444455567777
Q ss_pred -HHHhhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC
Q psy12594 255 -AVEHLTYP--HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305 (542)
Q Consensus 255 -L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 305 (542)
+++...++ +...+.-...+|.+-..-.....+.+...|....+..++.+.-
T Consensus 1588 ~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1588 TLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred EeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccc
Confidence 88888887 6666666666666666544445555557788999999998864
No 343
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=48.46 E-value=82 Score=30.69 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCChhhhhHhhcC--ChHHHHhhhcCCC---HHHHHHHHHHHHHhhcCChHHHH
Q psy12594 101 KKTALHMLTCVAQQDERCAGLIEDK--DLDSIISSLHDFD---PDTRANAALALGGLAKDNKHFAE 161 (542)
Q Consensus 101 ~~~a~~~L~~l~~~~~~~~~~~~~g--~v~~Lv~lL~~~~---~~~~~~a~~~L~~l~~~~~~~~~ 161 (542)
|..|+.++..+........++...+ ++..|+++++.++ ..+|..|+.+|..++.......+
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 3444444444443333333466555 9999999998664 68999999999999986665444
No 344
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=48.40 E-value=68 Score=28.72 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh
Q psy12594 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll 218 (542)
..+...+...|..++.+++.++..+.+. ++.++..+.......-..+..++..+-.++++....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4667888899999999999988888765 34333333332222223456778888888888888877444 88888888
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC
Q psy12594 219 NNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 219 ~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
.... -...-+..|..+|...
T Consensus 152 ~~~g--r~~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 152 RKHG--RQPRYLDFLSSLCVCN 171 (207)
T ss_dssp ----------------------
T ss_pred HHcC--CChHHHHHHhhhcccC
Confidence 7532 2223455566666543
No 345
>KOG2676|consensus
Probab=48.04 E-value=30 Score=33.25 Aligned_cols=62 Identities=5% Similarity=0.015 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc--CCChhHHHHHHHHHHHHhcCChHHHHHHH
Q psy12594 228 DAFLCLADIAKDSPSLASTIADGATTL-AVEHLT--YPHGLVQKNAATLLRDMCKHNLRLANLVV 289 (542)
Q Consensus 228 ~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 289 (542)
+..+.+++||...++.++.+.+.++++ +++-.. +.+|-+++..+.|+++|..++.++++.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 367789999998889999999999999 665443 33899999999999999999888877553
No 346
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=47.30 E-value=2.8e+02 Score=27.03 Aligned_cols=195 Identities=22% Similarity=0.158 Sum_probs=99.0
Q ss_pred cHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc--CChHHHH
Q psy12594 85 LVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK--DNKHFAE 161 (542)
Q Consensus 85 ~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~ 161 (542)
++..+..++.. .++......+.++..-...- ..-+...++..+..-+++..+.+|..-+..++.... .+... .
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~-~ 98 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS-L 98 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH-H
Confidence 44556666654 66777777777766643221 011223466778888888877788877777777664 11111 1
Q ss_pred HHHHcCChHHHHHhccC----CCHhHH---HHHHHHHHHHhcCCHHHHHH--hh----hCCChHHHH---HhhcC-CCHH
Q psy12594 162 RIVQCGALPPLVQILAS----PQLSLK---HAAAFALDGIVKHSPELAES--AS----DCDVIPLLI---KALNN-DEVN 224 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~----~~~~~~---~~a~~~L~nl~~~~~~~~~~--~~----~~~~i~~L~---~ll~~-~~~~ 224 (542)
.+ -..++|.|++.++. +-+..+ ..++.++..+.....+.... .. -.+-=|.++ ++++. .+++
T Consensus 99 ~~-~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~ 177 (339)
T PF12074_consen 99 KF-AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEE 177 (339)
T ss_pred HH-HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHh
Confidence 11 12357777777743 222211 11222222221111000000 00 000001100 22223 3555
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHhcCChHH
Q psy12594 225 VKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 225 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
.....+.++..+..+.......-.....-. ++.++-++ ...+|+.|..++..+....+..
T Consensus 178 d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 178 DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 556666666666654322111111234455 78888877 8999999999999998777763
No 347
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=47.23 E-value=3.3e+02 Score=27.82 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhh
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSL 134 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL 134 (542)
..|..|+.+|+.+++.-..+....+.. +.|+..|++....-|..++.++...+........ ..-....+.|...|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 567789999999993322333222222 2578889888888888899999988865432222 10123455667777
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy12594 135 HDFDPDTRANAALALGGLAKDNKHFAERIVQCGA 168 (542)
Q Consensus 135 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~ 168 (542)
..+.+..-.+....+..+-.+...+...+.+.|.
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6444322233333445554444555566666676
No 348
>KOG4524|consensus
Probab=47.05 E-value=84 Score=34.67 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=64.9
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHH----HhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTC----VAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~----l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (542)
++.....+|++++-.+|..++.+|.. |+... +.---.-+-.++.++..+...|+-+...|+.++.+++....++.
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~-n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYH-NLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccc-hhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 45566667888999999999988776 23332 22222234689999999999999999999999999997655543
Q ss_pred HHHHHcCChHHHHHhcc
Q psy12594 161 ERIVQCGALPPLVQILA 177 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~ 177 (542)
..=.-..++|.+-.+++
T Consensus 883 ~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333455777666554
No 349
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.65 E-value=25 Score=29.29 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=21.3
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDN 156 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 156 (542)
-+..|+.+|.+.|+.+...|+.+|.+...-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 3889999998888888889999888766433
No 350
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=46.41 E-value=2.8e+02 Score=26.76 Aligned_cols=139 Identities=17% Similarity=0.068 Sum_probs=82.8
Q ss_pred CHhHHHHHHHHHHHHhcCCHHHHHHhhhC-----------CChHHHHHhhc------CCCHHHHHHHHHHHHHHhcCChh
Q psy12594 180 QLSLKHAAAFALDGIVKHSPELAESASDC-----------DVIPLLIKALN------NDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 180 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-----------~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
.-++|.+|+.++.....++++.+..+++. .....++..|- +.|+.-...|+.+|..+-.+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 36889999999999999888888877631 11112444443 33555566788899999998887
Q ss_pred hHHHHHh------------hchHH-HHHhhcC-----CChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhc
Q psy12594 243 LASTIAD------------GATTL-AVEHLTY-----PHGLVQKNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDC 303 (542)
Q Consensus 243 ~~~~~~~------------~~~i~-L~~lL~~-----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~ 303 (542)
.++.... ...++ +..+|.. .++.++..-+..|....-+++.....+... ..++.|++....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 7665433 12334 4444433 266777766677766666777777666654 578899987543
Q ss_pred -CCcc--chHHHHHHHhH
Q psy12594 304 -NGGY--NSLPAIMALGY 318 (542)
Q Consensus 304 -~~~~--~~~~a~~~L~~ 318 (542)
++.. ++--+...||-
T Consensus 211 ~~~~~~~VqGL~A~LLGi 228 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGI 228 (312)
T ss_dssp -TCCCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHH
Confidence 3333 33334444443
No 351
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=46.07 E-value=74 Score=31.19 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=41.0
Q ss_pred ChHHHHhhhcCC-------CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC----------CCHhHHHHHH
Q psy12594 126 DLDSIISSLHDF-------DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS----------PQLSLKHAAA 188 (542)
Q Consensus 126 ~v~~Lv~lL~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~----------~~~~~~~~a~ 188 (542)
.+|.++.++.+. +.......+.++..|.. ++...-...=.-++|.++.++-. .+..+|..|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 567777776433 34444555555666654 33322222222357777776622 2368999999
Q ss_pred HHHHHHhc
Q psy12594 189 FALDGIVK 196 (542)
Q Consensus 189 ~~L~nl~~ 196 (542)
.+|..++.
T Consensus 290 ~ll~~i~~ 297 (343)
T cd08050 290 RLLAQICR 297 (343)
T ss_pred HHHHHHHH
Confidence 99999886
No 352
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=45.45 E-value=3.2e+02 Score=29.73 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChH
Q psy12594 222 EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 222 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~ 283 (542)
.+..|-.++..|+.+.+..+.....+.+...+. |+.+|..+ +..+...|+.+|..|-.+-+.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 456788899999999998877888889999999 99999877 888889999999988766554
No 353
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=45.08 E-value=3.2e+02 Score=27.10 Aligned_cols=177 Identities=18% Similarity=0.167 Sum_probs=97.1
Q ss_pred cCCChHHHHHHHHHHHHhHccCC--hHHHHHHHhcCcHHHHHHhhc----c-------CCHHHHHHHHHHHHHHhcCChh
Q psy12594 51 ADKVPSIQHAALATLGKLMCAKH--VDIRQEVLERNLVALVLKDLT----K-------QNKHYKKTALHMLTCVAQQDER 117 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~~--~~~~~~i~~~~~l~~Lv~~L~----~-------~~~~~~~~a~~~L~~l~~~~~~ 117 (542)
.+.+..-|..|-..|.+.....+ ++. ..+.+ -++.+++.++ + .+..+..+|+.+|+.+..+. .
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~-~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~-~ 78 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDR-QALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHP-E 78 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcH-HHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccH-H
Confidence 44556667777766666653222 222 22211 2333333321 1 24677788999988877554 3
Q ss_pred hhh-Hhhc---CChHHHHhhhcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc-----CCCHhHHHH
Q psy12594 118 CAG-LIED---KDLDSIISSLHDFD--PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA-----SPQLSLKHA 186 (542)
Q Consensus 118 ~~~-~~~~---g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~-----~~~~~~~~~ 186 (542)
... +-+. -.+...+..+.+++ ..+....+|+|..-... ..+.....+..++..+. -+...+...
T Consensus 79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence 333 2221 14555666665554 46666666766653321 12333333444444432 234678888
Q ss_pred HHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 187 a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
.+.++.++....|+....-. .--++.++..+-+...+++..|..++..+.
T Consensus 154 rL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 89999999886655433332 124566666666677778777766665554
No 354
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.64 E-value=1.7e+02 Score=23.70 Aligned_cols=69 Identities=6% Similarity=0.010 Sum_probs=43.6
Q ss_pred chHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh-HHHHHHHh-cCCHHHHHHhhhcCCc--------cchHHHHHHHhHh
Q psy12594 251 ATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL-RLANLVVL-AGGLDGLLRLIDCNGG--------YNSLPAIMALGYM 319 (542)
Q Consensus 251 ~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~-~~~i~~Lv~lL~~~~~--------~~~~~a~~~L~~l 319 (542)
.++. |..-|++.++.|+..++.+|.+++...+ .....+.+ ...|..+..+-..+++ .||..|-.++..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 5677 8888999999999999999999997654 44443332 2334444444433333 1555555555443
No 355
>KOG2199|consensus
Probab=44.23 E-value=1.1e+02 Score=30.15 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=58.0
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhc
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~ 113 (542)
..++..+.+-|...|+.|...|+..+..+........+..+...++...|..++. +..+.++.....++.+++.
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 3567888888999999999999999999994333777788878888888888888 4667777776666666653
No 356
>KOG1848|consensus
Probab=43.09 E-value=4.7e+02 Score=30.73 Aligned_cols=108 Identities=19% Similarity=0.081 Sum_probs=56.3
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcC-------C--ChhH----HHHHHHHHHHH
Q psy12594 213 LLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTY-------P--HGLV----QKNAATLLRDM 277 (542)
Q Consensus 213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~-------~--~~~v----~~~a~~~L~~L 277 (542)
.|.++..+.-.++|..|+.++..+-... ........+.-... ++.+|.. . .+++ -+..+.++..+
T Consensus 1001 ~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgI 1080 (1610)
T KOG1848|consen 1001 HLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGI 1080 (1610)
T ss_pred HHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHH
Confidence 3444555667789999999888876532 22333333333444 5566652 1 2233 22344455555
Q ss_pred hcCChHHHHHHHhcC----C----HHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 278 CKHNLRLANLVVLAG----G----LDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~----~----i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
++--++..+.+.... + +..+..+..+.++++...++.++..+.
T Consensus 1081 aklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1081 AKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 544444444333322 2 233334445567777777777665543
No 357
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=42.81 E-value=3.5e+02 Score=26.86 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhccCCC--HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594 138 DPDTRANAALALGGLAKDNKHFAERIVQC---GALPPLVQILASPQ--LSLKHAAAFALDGIVKHSPELAESASDCDVIP 212 (542)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~---g~i~~L~~ll~~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~ 212 (542)
+..+-.+|+++|+.+.. ++.....+-+. -++...+..+.+++ ..+....+|+|..--. ++ .+.....+.
T Consensus 59 ~~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-~~----~~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-SP----KIMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CC----cccchhhHH
Confidence 46777888998888875 44433333322 13556666665553 5677777777764332 12 233344444
Q ss_pred HHHHhhc-----CCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 213 LLIKALN-----NDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 213 ~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
.++..+. -+...+....+.++.++....+.. +.. ..-++ ++..+-+....++..|..++..+.
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~---M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ---MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4544443 235668888888999998775532 222 23567 777777777777777666665553
No 358
>KOG2149|consensus
Probab=42.38 E-value=3.5e+02 Score=26.84 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=75.5
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
-+.-|+..+++.+..+|..|+.-|..+....+.... .....+++.+..+.-+.+..+|.....++.++...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 466788888999999999999988887764444222 1222346677777777788888888888877655322111111
Q ss_pred hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.-.-..+.+...+....++++..++..|.-+....+
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 111123444445556788999999999988887654
No 359
>KOG2676|consensus
Probab=42.20 E-value=39 Score=32.53 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCChhhhh-HhhcCChHHHHhhh--cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy12594 104 ALHMLTCVAQQDERCAG-LIEDKDLDSIISSL--HDFDPDTRANAALALGGLAKDNKHFAERIVQC 166 (542)
Q Consensus 104 a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~ 166 (542)
...+++++|...++.+. +.+-|+++.++.-. .+.+|.+++....|+..+...+.++++.+.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 55678899988778887 88889998877654 35579999999999999999888877766543
No 360
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=42.14 E-value=1.5e+02 Score=28.94 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHhhcCC---CHHHHHHHHHHHHHHhcCChhhHH
Q psy12594 182 SLKHAAAFALDGIVKHSPELAESASDCD--VIPLLIKALNND---EVNVKADAFLCLADIAKDSPSLAS 245 (542)
Q Consensus 182 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~ 245 (542)
.+|..|+.++..+.. .+.....++..+ ++.-|+++++.. ..+++..|+.+|..++.+.....+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 344445545544443 566666777666 889999999844 577999999999999997764444
No 361
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=41.86 E-value=2.7e+02 Score=25.35 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCH--------------HHHHH----HHHHHHHHhcCCh
Q psy12594 55 PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK--------------HYKKT----ALHMLTCVAQQDE 116 (542)
Q Consensus 55 ~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~--------------~~~~~----a~~~L~~l~~~~~ 116 (542)
+.....++..+..|. ..++......+.+.++.+.+.|..-++ .+... =...++.++....
T Consensus 78 ~~y~~vGc~L~~~Ll--~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLL--SSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPN 155 (226)
T ss_pred hHHHHHHHHHHHHHH--cCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChh
Confidence 344555667778887 666766666688899988887754311 11111 1234666776665
Q ss_pred hhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHh
Q psy12594 117 RCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195 (542)
Q Consensus 117 ~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~ 195 (542)
....+-+.++...+.++....+ +++... .+.++-...+...+. .|-+.|..++..+|..|...|+.+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 5555777888888888887654 222222 344443322222222 2456778888899999999888765
Q ss_pred c
Q psy12594 196 K 196 (542)
Q Consensus 196 ~ 196 (542)
.
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 362
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.44 E-value=2.6e+02 Score=24.89 Aligned_cols=139 Identities=17% Similarity=0.042 Sum_probs=86.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-CHhHHHHH-HHHHHHHhcCCHHHHHHh
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAA-AFALDGIVKHSPELAESA 205 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a-~~~L~nl~~~~~~~~~~~ 205 (542)
..+..+..++..+.+..|+.++.......+. . .++.+-.++..- +..+.... ..+++.+....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~---~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTE---E-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H---H-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH---H-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 4555667777788888888777654321111 0 245556666653 34444333 44455544311
Q ss_pred hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHH
Q psy12594 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
....+.+...+.+.++-.++.++-++....... .. ...+. +...+.+++..++....|+|+.++...++.
T Consensus 119 --~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~--~~-----~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 119 --PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE--DF-----DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp --GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC--HH-----HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred --HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc--CH-----HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 234577888899999999998887776655442 11 13444 555667778999999999999999998887
Q ss_pred HHHHHh
Q psy12594 285 ANLVVL 290 (542)
Q Consensus 285 ~~~~~~ 290 (542)
....+.
T Consensus 190 v~~~l~ 195 (213)
T PF08713_consen 190 VLEFLQ 195 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765554
No 363
>KOG1087|consensus
Probab=41.30 E-value=97 Score=31.66 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=58.4
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVA 112 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~ 112 (542)
.++..|.+.+.+..+.++..|+..|-.+...........+.+.++++.+|.+.+. .+..+|..++..|....
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 4566778888888899999999999999933337777899999999999999885 46788888888877654
No 364
>KOG2549|consensus
Probab=38.75 E-value=4.3e+02 Score=27.47 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=63.9
Q ss_pred hHHHHHhccCC--------CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc----------CCCHHHHHHHH
Q psy12594 169 LPPLVQILASP--------QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN----------NDEVNVKADAF 230 (542)
Q Consensus 169 i~~L~~ll~~~--------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~~~~~a~ 230 (542)
+|.++.++.+. +-.+....+..++.|.. ++...-..+=...+|.++.++- +.+..+|..|+
T Consensus 241 lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA 319 (576)
T KOG2549|consen 241 LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAA 319 (576)
T ss_pred HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHH
Confidence 56666666542 34455556666666665 4433322222345566665543 22456999999
Q ss_pred HHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHh
Q psy12594 231 LCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMC 278 (542)
Q Consensus 231 ~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~ 278 (542)
..+..++.+-...... ....+.. +...+.+. +....+-++..|..|.
T Consensus 320 ~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 320 RLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 9999999876544333 4445666 66666665 4566666766666665
No 365
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=38.66 E-value=2e+02 Score=22.93 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=0.0
Q ss_pred ChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC------
Q psy12594 168 ALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS------ 240 (542)
Q Consensus 168 ~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------ 240 (542)
++|.+.+.++ +..++.+..+..+++.|+. .......++ ...+..+..-...... .+.++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~-k~~L~~~~l-~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~~~~l 82 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLAS-KVPLSDEVL-NALMESILKNWTQETV--QRQALICLIVLCQSQENVDSL 82 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHh-hcCCcHHHH-HHHHHHHHhccccchh--HHHHHHHHHHHHHcccccccC
Q ss_pred -hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 241 -PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 241 -~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
.+..+.+.....+. .+.-+ ....++..-....+..+
T Consensus 83 p~~~~~~l~~~~~l~~~L~~l-~~~~~i~~fl~~l~~~l 120 (121)
T PF12397_consen 83 PRKVFKALLKLPDLIELLSEL-SEKYDIDKFLRALLRSL 120 (121)
T ss_pred CHHHHHHHHcCccHHHHHHHH-HhcCCHHHHHHHHHHHh
No 366
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=37.43 E-value=2.2e+02 Score=29.44 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=51.5
Q ss_pred hhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCC-------------hHHHHHHHhcCCHHHHHHhhhc-CC
Q psy12594 242 SLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHN-------------LRLANLVVLAGGLDGLLRLIDC-NG 305 (542)
Q Consensus 242 ~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~-------------~~~~~~~~~~~~i~~Lv~lL~~-~~ 305 (542)
...+.+.+.++++ |+.+|... +.+++.+|+..|..+.... ......+.....+..|+..+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 3455666688899 99999754 7888888888887774322 2233445555667777766553 33
Q ss_pred ccchHHHHHHHhHhhc
Q psy12594 306 GYNSLPAIMALGYMSA 321 (542)
Q Consensus 306 ~~~~~~a~~~L~~l~~ 321 (542)
......++.++..+.+
T Consensus 133 ~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 133 GSSLVNGVSILIELIR 148 (475)
T ss_pred cchHHHHHHHHHHHHH
Confidence 5566666666666654
No 367
>KOG4524|consensus
Probab=37.21 E-value=1e+02 Score=34.15 Aligned_cols=91 Identities=18% Similarity=0.081 Sum_probs=63.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHh----cCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHH
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIA----KDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLA 285 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~ 285 (542)
+..-..+|++.+..+|-.++.+|..-. ........ + -+...+ ++..+...++-+...|+.++.+++.+..+..
T Consensus 805 l~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-l-vhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 805 LGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-L-VHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-H-HHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 344556677778888888888776532 22211212 2 245677 9999999999999999999999998887765
Q ss_pred HHHHhcCCHHHHHHhhhc
Q psy12594 286 NLVVLAGGLDGLLRLIDC 303 (542)
Q Consensus 286 ~~~~~~~~i~~Lv~lL~~ 303 (542)
..=.-..++|.+-.++..
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 543445677777776654
No 368
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.24 E-value=2.6e+02 Score=23.51 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594 352 QVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL 421 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~ 421 (542)
+..|...|+.+.-|. .+..|+.+|.+. +.++...|+.+|.+.+--.+.++.+..+-+
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~--d~~lA~~Aa~aLk~TlLvyDaf~dv~~~ak 136 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSD--DEELAEEAAEALKNTLLVYDAFNDVAELAK 136 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G---TTTHHHHHHHHHT--TTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCC--cHHHHHHHHHHHHhhHHHHhhHHHHHHHHH
Confidence 455666677664332 247778888655 347888888888887644444444444433
No 369
>PLN03205 ATR interacting protein; Provisional
Probab=35.61 E-value=4e+02 Score=26.44 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=87.3
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcC---Chhhhh-HhhcCChHHHHhhhc-----CCCHHHHHHHHHHHHHhhcC
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQ---DERCAG-LIEDKDLDSIISSLH-----DFDPDTRANAALALGGLAKD 155 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~---~~~~~~-~~~~g~v~~Lv~lL~-----~~~~~~~~~a~~~L~~l~~~ 155 (542)
.+++|+++..-++..+...++++|..+..+ +...-+ -.+.+.+ .|.+++. +....+|..|+..+--+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlms 402 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMS 402 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhc
Confidence 455666776778888888888887776543 111111 2233322 3444432 33466777787766655532
Q ss_pred --ChHHHHHHHHcCChHHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhh-----------h-------------C
Q psy12594 156 --NKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESAS-----------D-------------C 208 (542)
Q Consensus 156 --~~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~-----------~-------------~ 208 (542)
...-++.+....+++.+-++|+.+. ..+|..++..|.-|-. .|.....+- + .
T Consensus 403 sna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fS 481 (652)
T PLN03205 403 TDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFG 481 (652)
T ss_pred cchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHHH
Confidence 2234566666677788888888764 6777777766543322 111111110 0 0
Q ss_pred CChHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCh
Q psy12594 209 DVIPLLIKALNN-----DEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 209 ~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+++-|...+.. .+.++++.++..|+.++....
T Consensus 482 sIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 482 KIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 122344444442 267788889988988887654
No 370
>KOG1992|consensus
Probab=35.54 E-value=6.4e+02 Score=27.81 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=73.5
Q ss_pred CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcC----Chhh-hhHhhc
Q psy12594 52 DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQ----DERC-AGLIED 124 (542)
Q Consensus 52 s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~----~~~~-~~~~~~ 124 (542)
+.||.++..|-++|..+. .. .|..-.++.++.. .++.+|..|+-.+.|.++. .++. .++.+.
T Consensus 16 ~pdps~rk~aEr~L~~~e--~q---------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~ 84 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLE--GQ---------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE 84 (960)
T ss_pred CCCCccCchHHHHHHHhc--cC---------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchh
Confidence 456888888888888887 22 3444566777765 3588888998888887752 1122 123222
Q ss_pred --CC-hHHHHhhhcCCCHHHHHHHHHHHHHhh-cCChHHHHHHHHcCChHHHHHhccCCCHh
Q psy12594 125 --KD-LDSIISSLHDFDPDTRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILASPQLS 182 (542)
Q Consensus 125 --g~-v~~Lv~lL~~~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~ 182 (542)
.. -..++.++-+....++..-..+|.-++ .+.|+-+..+ +|.|+..+++.|-.
T Consensus 85 ~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptL-----l~dL~~~ls~~D~~ 141 (960)
T KOG1992|consen 85 DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTL-----LPDLVARLSSGDFN 141 (960)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHH-----HHHHHhhccccchH
Confidence 12 234556666666788888888888888 4455555554 66677777766533
No 371
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.44 E-value=80 Score=25.21 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=30.6
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHH
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVL 81 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~ 81 (542)
+|+.|++-|.+.+++|...|+..|...+ .++...+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c--~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEAC--EDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH--hchhhHHHHH
Confidence 5788999999999999999999999999 6654444433
No 372
>KOG4464|consensus
Probab=35.42 E-value=4.7e+02 Score=26.18 Aligned_cols=83 Identities=11% Similarity=-0.019 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC-----CHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCCh
Q psy12594 138 DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-----QLSLKHAAAFALDGIVKHSPELAE-SASDCDVI 211 (542)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i 211 (542)
+..+...+..||.|+...++..++...+......+++.+... ...+...-++.|.-+..-.++.+. .+.+.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 457888999999999999999999999988877777766432 122333333333333332334444 45578899
Q ss_pred HHHHHhhcC
Q psy12594 212 PLLIKALNN 220 (542)
Q Consensus 212 ~~L~~ll~~ 220 (542)
+.+.+++.+
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999999874
No 373
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=34.97 E-value=95 Score=25.87 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=24.6
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhH
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLM 69 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 69 (542)
...-..+..+|.+.|+++|..|+.++...-
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 344556778899999999999999998876
No 374
>KOG0392|consensus
Probab=34.88 E-value=1.7e+02 Score=33.56 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=62.7
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHH-HhcCChhhhhH
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTC-VAQQDERCAGL 121 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~~ 121 (542)
.|.+...+.+.++.+|..|+.++..++ .. ..++.+. -.+..++.++...+...++.++..+.. ++........-
T Consensus 818 l~~l~~~~~s~~~a~r~~~ar~i~~~~--k~-~~~e~m~--~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~ 892 (1549)
T KOG0392|consen 818 LPRLFFFVRSIHIAVRYAAARCIGTMF--KS-ATRETMA--TVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVP 892 (1549)
T ss_pred hhHHHHhcccchHHHHHHHHHHHHHHH--HH-HHHHHHH--HHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccc
Confidence 455566667888899999999999888 33 1111111 144455566665455555544443333 33211000001
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLA 153 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 153 (542)
...=.++.|.+.+.+....+|..|..+++.+.
T Consensus 893 ~~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 893 YNPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred cceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 11125677888888888999999999888775
No 375
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=33.60 E-value=22 Score=27.71 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=21.7
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhH
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLM 69 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 69 (542)
.-..|+.|++++++.||..|+..+..+.
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred hHHHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 3467889999999999999987776665
No 376
>KOG2549|consensus
Probab=33.00 E-value=3.6e+02 Score=27.99 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=74.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--------CHHHHHHHHHHHHHhhcCCh
Q psy12594 86 VALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--------DPDTRANAALALGGLAKDNK 157 (542)
Q Consensus 86 l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--------~~~~~~~a~~~L~~l~~~~~ 157 (542)
+..+.+.+..+++..+..|+..|.. ++.... .+|.++.++... |-..........+.|.. ++
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T----DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np 278 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET----DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NP 278 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc----CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CC
Confidence 3444444555666666666555432 111111 456666665432 34455556666666665 44
Q ss_pred HHHHHHHHcCChHHHHHhccCC----------CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC--CHHH
Q psy12594 158 HFAERIVQCGALPPLVQILASP----------QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND--EVNV 225 (542)
Q Consensus 158 ~~~~~i~~~g~i~~L~~ll~~~----------~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~ 225 (542)
...-...=..++|.++.++-+. +..+|..|+..+..++.+....... ....++..+.+.+.+. +...
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchh
Confidence 4322222234577777665332 2568888888888888754433333 3344556666666544 3445
Q ss_pred HHHHHHHHHHHh
Q psy12594 226 KADAFLCLADIA 237 (542)
Q Consensus 226 ~~~a~~~L~~l~ 237 (542)
..-++..|..|.
T Consensus 358 ~YGai~gL~~lg 369 (576)
T KOG2549|consen 358 HYGAIAGLSELG 369 (576)
T ss_pred hhhHHHHHHHhh
Confidence 555555555553
No 377
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=32.54 E-value=3.2e+02 Score=23.34 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=54.2
Q ss_pred hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH-Hh-hchHH-HHH-hhcCCC--hhHHHHHHHHHHHHh
Q psy12594 205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI-AD-GATTL-AVE-HLTYPH--GLVQKNAATLLRDMC 278 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~-~~~i~-L~~-lL~~~~--~~v~~~a~~~L~~L~ 278 (542)
++.....+.+.+.+.+.++.+-..++.++..+... .+..+ .+ .-.++ ++. ++.++. .+-+..++.++..++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 33456667777777777788999999999999854 22222 22 23444 444 666553 577888999999999
Q ss_pred cCChHHHHHHHh
Q psy12594 279 KHNLRLANLVVL 290 (542)
Q Consensus 279 ~~~~~~~~~~~~ 290 (542)
..+.-..+...+
T Consensus 146 ~~p~~l~~lf~N 157 (168)
T PF12783_consen 146 KDPQFLVDLFVN 157 (168)
T ss_pred hChhHHHHHHHH
Confidence 765544444333
No 378
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=32.48 E-value=3.9e+02 Score=24.37 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCCh--------------HHHH----HHHHHHHHhHccCChHHHHHH
Q psy12594 19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVP--------------SIQH----AALATLGKLMCAKHVDIRQEV 80 (542)
Q Consensus 19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~--------------~v~~----~a~~~L~~l~~~~~~~~~~~i 80 (542)
...+.+..+.+.++....+.+.+.++.+...|...|| .+.. .=...++.++ .++.....+
T Consensus 83 vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS--~~~~Gl~lL 160 (226)
T PF14666_consen 83 VGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLS--STPNGLKLL 160 (226)
T ss_pred HHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHh--CChhHHHHH
Confidence 3456666777778888888888888888777754422 1111 1224566676 666666777
Q ss_pred HhcCcHHHHHHhhccCCH-HHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc
Q psy12594 81 LERNLVALVLKDLTKQNK-HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAK 154 (542)
Q Consensus 81 ~~~~~l~~Lv~~L~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 154 (542)
-+.+.+..+..+....+. ++... ++.++=...+... =..|-..|.+++..+|..|...|..+.+
T Consensus 161 e~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~~~~-------R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 161 ERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVDGHP-------RIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCccHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 777888888777776433 22222 3444322221111 1234566778888999999888877653
No 379
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=31.76 E-value=1.7e+02 Score=20.77 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=27.9
Q ss_pred CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594 377 NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC 410 (542)
Q Consensus 377 ~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~ 410 (542)
|....++.++.+++.+..+|..|+-.|.|.+.+.
T Consensus 14 ~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~ 47 (77)
T PF03810_consen 14 GFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN 47 (77)
T ss_dssp CHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 6788888999666657889999999999988663
No 380
>KOG2085|consensus
Probab=31.23 E-value=1.7e+02 Score=28.99 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhH
Q psy12594 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLM 69 (542)
Q Consensus 20 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 69 (542)
+++.+..-..++......++...+-.|+.|..|+||..|..--.+|.++-
T Consensus 156 ~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIy 205 (457)
T KOG2085|consen 156 LLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIY 205 (457)
T ss_pred HHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 44555555557778888889999999999999999999988888887777
No 381
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.03 E-value=3.1e+02 Score=22.78 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=51.9
Q ss_pred chHHHHHhhcCCChhhHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHH-HHHHHhcC-CCChHHHHHHHHHHHHHHhhC
Q psy12594 335 GVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS-VDNVTALCEENVLST-LLSKITQT-CVSDNLKSKCKNALNILIPKC 410 (542)
Q Consensus 335 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~-L~~ll~~~-~~~~~v~~~a~~aL~nl~~~~ 410 (542)
++..|..-+.++.++.++..|+..|-.+..+. ......+...+++.. |+.++... +++..|+..+...+.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 45556666665445677777887777776554 455666777788887 88888732 234688998888887776543
No 382
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=30.32 E-value=99 Score=24.66 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=31.7
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQ 165 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~ 165 (542)
+++.|++-|.++++++...|..+|...+.+. .+.+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 6789999999999999999999999998755 54454443
No 383
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=29.92 E-value=1.3e+02 Score=22.80 Aligned_cols=60 Identities=20% Similarity=0.083 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 348 KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 348 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
+..+|..|+..|+.++...... ..-+...++..+.+.+.+++.+...+..|...|..+..
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~-~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSS-YPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999997643221 12223356778888888887777888899999988853
No 384
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=29.51 E-value=4.8e+02 Score=24.47 Aligned_cols=166 Identities=20% Similarity=0.139 Sum_probs=0.0
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhh
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS 206 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~ 206 (542)
+.-|.+.|+..|+..+ .+..+++ .-.+++...+|.|+..-. ++.+...++..|.+|+.
T Consensus 15 LkdL~r~lr~dd~~~~-~v~r~lg---------~~~iv~~DLiPiL~~~~~--~~~l~~~~l~LLV~LT~---------- 72 (266)
T PF04821_consen 15 LKDLKRFLRRDDEDQR-DVRRQLG---------EWNIVQKDLIPILISYKD--DDKLFLACLRLLVNLTW---------- 72 (266)
T ss_pred HHHHHHHHHHhCcchH-HHHHHHH---------HhchhhhhHHHHHHhccC--chHHHHHHHHHHHHhCC----------
Q ss_pred hCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhh-----------cCCChhHHHHHHHHH
Q psy12594 207 DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHL-----------TYPHGLVQKNAATLL 274 (542)
Q Consensus 207 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL-----------~~~~~~v~~~a~~~L 274 (542)
|...- ....+--......+..+-..-..++..+...+++. ++.++ ...|..+.+.++..+
T Consensus 73 -----P~~~~---~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~Li 144 (266)
T PF04821_consen 73 -----PIELL---VESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLI 144 (266)
T ss_pred -----CHHHh---ccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHH
Q ss_pred HHHhcCCh----------------HHHHHHHhcCCHHHHHHhhhcC-CccchHHHHHHHhHhhcC
Q psy12594 275 RDMCKHNL----------------RLANLVVLAGGLDGLLRLIDCN-GGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 275 ~~L~~~~~----------------~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~ 322 (542)
+|+..-++ .....+.+.|+...|+.+..+. ........+.++..+..+
T Consensus 145 RNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 145 RNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKG 209 (266)
T ss_pred HHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcC
No 385
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=29.39 E-value=46 Score=20.92 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=19.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHH
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCL 233 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L 233 (542)
.+...+...+.++++.+|+.++.++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3446777788888999999887653
No 386
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=28.43 E-value=8.3e+02 Score=26.91 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHH
Q psy12594 349 EQLQVAAAWTLGQIGKHSVDNVTALCE-ENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEE 427 (542)
Q Consensus 349 ~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~ 427 (542)
..+.......|+.++.-+++....++. .+....++.++-++ ++++...|...|.......+-.+.+-.+|+ .....
T Consensus 495 ~~~~~~~~~il~rls~~~~~~L~~l~~d~~~~~~i~s~lfsp--~~~l~qaA~~llk~~~d~~~R~e~i~~ll~-~~~~~ 571 (727)
T PF12726_consen 495 GQITDLISQILERLSDFDPSHLKELLSDPDAAQAIWSLLFSP--DDDLYQAAQDLLKQAFDVDGRLEAIQALLQ-SNFSP 571 (727)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHcCcchhhHHHhheeCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHH-HhHHH
Confidence 356777889999998889998888885 68899999999987 468999999999988765555778888887 66666
Q ss_pred HHHHHHHHHHhhCCC
Q psy12594 428 LLASILCAFAKILPC 442 (542)
Q Consensus 428 v~~~~l~~l~~ll~~ 442 (542)
.+..+...+.++...
T Consensus 572 tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 572 TLSAINWSLRQLTKL 586 (727)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666666666543
No 387
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=26.71 E-value=5.9e+02 Score=24.62 Aligned_cols=149 Identities=14% Similarity=0.106 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh-hc----C----CCHHHHHHHHHHHHHHhcCChhhHHHHHhhch
Q psy12594 182 SLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA-LN----N----DEVNVKADAFLCLADIAKDSPSLASTIADGAT 252 (542)
Q Consensus 182 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l-l~----~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 252 (542)
.+++..+..+.......++ ... +....+|+++.. +. + .++++.......+..+-..-.+....+.+ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~-~~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAED-PEE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S--HHH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCC-HHH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 5666667777666663332 222 335666776663 32 1 36677777777777766543334444443 45
Q ss_pred HH-HHHhhcCC---ChhHHHHHHHHHHHHhcCChHHHHHHH---hcCCHHHHHHhhhcCCccchHHHHHHHhHhhc----
Q psy12594 253 TL-AVEHLTYP---HGLVQKNAATLLRDMCKHNLRLANLVV---LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA---- 321 (542)
Q Consensus 253 i~-L~~lL~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~---- 321 (542)
.. .+.++..+ -|+.+..-...|..+..+.....-.+- -...++.++-.+++.+.++...++.++..+..
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 55 77888765 378888888888887765432211110 01346677788899999999999998887764
Q ss_pred CChHHHHHHHhh
Q psy12594 322 QSEQIAEQIIEL 333 (542)
Q Consensus 322 ~~~~~~~~~~~~ 333 (542)
.+++....+.+.
T Consensus 199 ~~~~~~~~F~~~ 210 (319)
T PF08767_consen 199 TNPEFANQFYQQ 210 (319)
T ss_dssp -SHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 234445555544
No 388
>KOG2312|consensus
Probab=26.67 E-value=9.5 Score=39.64 Aligned_cols=152 Identities=12% Similarity=0.058 Sum_probs=94.4
Q ss_pred HHHHHHhcCCCCchHHHHhCC-chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHH
Q psy12594 21 VQTMSAFADKPSTIHFLKDLN-VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH 99 (542)
Q Consensus 21 ~~~l~~l~~~~~~~~~l~~~g-~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~ 99 (542)
.+.+.+|+.+++++..+...- ....|+..-.-....++.+|+.++.+|+ .. ....+..-..+-.+.+.+.+.+..
T Consensus 14 ~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~~~Vqal~s~~nla--qp--t~~e~S~~~~L~t~t~Gi~S~drf 89 (847)
T KOG2312|consen 14 PTVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQMQVQALQSNANLA--QP--TSGESSLIKQLLTPTRGISSPDRF 89 (847)
T ss_pred ceeeeeeccchhhhcccCCCCChhheeeeecccccchhhhHhhhhhcccC--Cc--chhhhhHHHHHhhhccCCCCCCce
Confidence 455677888888888876653 3334444444556788999999999999 43 111111112333445556677888
Q ss_pred HHHHHHHHHHHHhcCChh--hhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHh
Q psy12594 100 YKKTALHMLTCVAQQDER--CAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQI 175 (542)
Q Consensus 100 ~~~~a~~~L~~l~~~~~~--~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~l 175 (542)
+...++.+|..+|..... ... ..........+..+.-.|..+....+.+|..++...+.-...+.+. +.+..|+.+
T Consensus 90 limr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is~v~klidqLVsl 169 (847)
T KOG2312|consen 90 LIMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPISNVQKLIDQLVSL 169 (847)
T ss_pred eEeeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhhhhhhhhhhhhcc
Confidence 888999999999865432 222 5566677777777766665555666666776664443333333332 556666654
Q ss_pred c
Q psy12594 176 L 176 (542)
Q Consensus 176 l 176 (542)
.
T Consensus 170 ~ 170 (847)
T KOG2312|consen 170 S 170 (847)
T ss_pred c
Confidence 4
No 389
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=26.46 E-value=1.8e+02 Score=22.03 Aligned_cols=57 Identities=18% Similarity=0.018 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHh
Q psy12594 221 DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMC 278 (542)
Q Consensus 221 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~ 278 (542)
.+..+|+.|+..|..++....... .-....+.. +...+.++ ......-|+..|..|.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999997543221 122335666 77777766 4567777888777773
No 390
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=26.20 E-value=3.2e+02 Score=21.37 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=43.1
Q ss_pred CChHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHhcC
Q psy12594 209 DVIPLLIKALNN----DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 209 ~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~~~ 280 (542)
|.+..+...+.+ .+...+..++.++..+.+-...... ...| +..+|+.. .++++..++.+-..+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 344445555544 4667888899999888774332222 4456 67777655 458888888887777654
No 391
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=26.11 E-value=3.4e+02 Score=22.82 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=61.2
Q ss_pred CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHH
Q psy12594 322 QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH--SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKC 399 (542)
Q Consensus 322 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a 399 (542)
++++.-+.+.+.+.+..+.++++......++...+.+++-+..+ ++.....+++.+.+..++..--+-+ ++++...=
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~-~ee~l~yY 92 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS-DEEVLSYY 92 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC-cchhHHHH
Confidence 45567788899999999999999855567888888777766543 4455566677777777776554443 56777766
Q ss_pred HHHHHHHHh
Q psy12594 400 KNALNILIP 408 (542)
Q Consensus 400 ~~aL~nl~~ 408 (542)
...|..++-
T Consensus 93 IsfLK~lSl 101 (149)
T PF09758_consen 93 ISFLKTLSL 101 (149)
T ss_pred HHHHHHHHh
Confidence 677777753
No 392
>KOG2038|consensus
Probab=25.42 E-value=9.3e+02 Score=26.45 Aligned_cols=277 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
.|..|..+..+.-+.++..++.++..|. .. ++. +..++..+|.-|.+++..+-..|...|.+|....|.++.
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL--~~kPEq-----E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLL--TNKPEQ-----ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHH--hCCcHH-----HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Q ss_pred HhhcCChHHHHhhhcCCC--HHHHHHHHHHHHHhh--cCChHHHHHHHHcCChHHHHHhccCCC-HhH------------
Q psy12594 121 LIEDKDLDSIISSLHDFD--PDTRANAALALGGLA--KDNKHFAERIVQCGALPPLVQILASPQ-LSL------------ 183 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~--~~~~~~~~~i~~~g~i~~L~~ll~~~~-~~~------------ 183 (542)
++ +..+.+++-.++ ......|+..|..+. .....+...++.-= +..+-.++...+ ...
T Consensus 378 Vv----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iY-F~lFk~l~~~~~~d~~k~~k~~~k~kks 452 (988)
T KOG2038|consen 378 VV----IDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIY-FSLFKTLVGKKDKDNRKDDKGAAKKKKS 452 (988)
T ss_pred eh----HHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHH-HHHHHHHHHhhhhhhhhcccchhhcccc
Q ss_pred --------------------HHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 184 --------------------KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL 243 (542)
Q Consensus 184 --------------------~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 243 (542)
...|+.+=.|=+.--.......+ ..-++.|..+..+.+-.+-.+|+..|..++....-.
T Consensus 453 ~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~-~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~~~~v 531 (988)
T KOG2038|consen 453 NKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKL-EEQMKTLFKLTHSSNFNTSVQALMLLFQVSKKNDYV 531 (988)
T ss_pred cccchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHH-HHHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594 244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 322 (542)
.+ .... |-.-|-++.---.......|.-|-+.-..-...-+-.-++.++++.-....|.....++..+..|...
T Consensus 532 SD-----RyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llsel~Ka 606 (988)
T KOG2038|consen 532 SD-----RYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVKRLLQVAVQQQPPFICGILFLLSELLKA 606 (988)
T ss_pred HH-----HHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHHHHHh
Q ss_pred ChHHHHHHHhhCch
Q psy12594 323 SEQIAEQIIELQGV 336 (542)
Q Consensus 323 ~~~~~~~~~~~~~l 336 (542)
.+.....+.....+
T Consensus 607 rp~l~~lv~~~~~~ 620 (988)
T KOG2038|consen 607 RPTLRKLVVNSEDI 620 (988)
T ss_pred cchHHHHhhCCccc
No 393
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.05 E-value=2.3e+02 Score=21.12 Aligned_cols=66 Identities=9% Similarity=0.033 Sum_probs=40.8
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCC--CChHHHHHHHHH
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTC--VSDNLKSKCKNA 402 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~~~v~~~a~~a 402 (542)
+..++.++..++.+.++.++|...+.++.++.....+.. .+ +-+.++.++.... .++++...|..+
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~S-GW~~if~il~~aa~~~~e~lv~~af~~ 82 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KS-GWKVIFSILRAAAKDNDESLVRLAFQI 82 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hh-ccHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 346788888888776778999999999999976544322 33 3444555544321 133454444433
No 394
>PLN03205 ATR interacting protein; Provisional
Probab=24.76 E-value=1.9e+02 Score=28.53 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=67.3
Q ss_pred HHHHHHhhhcCCccchHHHHHHHhHhhc---CChHHHHHHHhhCchH---HHHHhhcCCChhhHHHHHHHHHHHhhcC-C
Q psy12594 294 LDGLLRLIDCNGGYNSLPAIMALGYMSA---QSEQIAEQIIELQGVG---SLQTILQCPHKEQLQVAAAWTLGQIGKH-S 366 (542)
Q Consensus 294 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~ 366 (542)
++.|+.+..-++..+...+++.|..+.. ++....+.-++.+.+. .+.++-....++.++.+|....--|... +
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 4566777777777777777777765543 3333333334433322 2233323334567887777665544333 2
Q ss_pred hH-HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 367 VD-NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 367 ~~-~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
+. .+..+-...+++.+-++|+.+.+ -.||++|...|.-++
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaG-l~VqKealhLLfLLL 445 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGG-LHVRKEAIHLFYLLL 445 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhcc-chhhHHHHHHHHHHH
Confidence 22 23334455788999999998763 679999988776553
No 395
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.36 E-value=3.7e+02 Score=23.19 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh
Q psy12594 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll 218 (542)
-++|..|..++..+......... +. .+++.+..-+.+ +.+++..+...|.+++...|.....-+ ...++.+-..+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~L-d~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRL-DSLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCC-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHh
Confidence 58999999999888643222111 11 125666777777 889999999999999998777665554 46777777777
Q ss_pred cCC------------CHHHHHHHHHHHHHH
Q psy12594 219 NND------------EVNVKADAFLCLADI 236 (542)
Q Consensus 219 ~~~------------~~~~~~~a~~~L~~l 236 (542)
... ..+..+.+++++..|
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 521 234666777777766
No 396
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=24.08 E-value=1.9e+02 Score=27.68 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=40.3
Q ss_pred hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCC--------------hHHHHHHHhcCCHHHHHHhhhc
Q psy12594 250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHN--------------LRLANLVVLAGGLDGLLRLIDC 303 (542)
Q Consensus 250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~--------------~~~~~~~~~~~~i~~Lv~lL~~ 303 (542)
...+. +++-|...+...+..++.+|.+++.+. ..+...+.+.|+++.++.+|+.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45666 888888888999999999999998664 1234455677788888777754
No 397
>KOG2085|consensus
Probab=23.76 E-value=6.5e+02 Score=25.20 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhh
Q psy12594 55 PSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISS 133 (542)
Q Consensus 55 ~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~l 133 (542)
|..|.-=-..|+-+.+... +.....+++...+-.|+++..++++..|..--.+|.++-..-...+.++..+.=..+.+.
T Consensus 147 phLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~F 226 (457)
T KOG2085|consen 147 PHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRF 226 (457)
T ss_pred hHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhh
Confidence 3444443344555553332 677788888899999999999999999888888888765422233333333333333444
Q ss_pred h
Q psy12594 134 L 134 (542)
Q Consensus 134 L 134 (542)
.
T Consensus 227 I 227 (457)
T KOG2085|consen 227 I 227 (457)
T ss_pred c
Confidence 3
No 398
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=22.94 E-value=2.3e+02 Score=23.87 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=79.5
Q ss_pred CCCchHHHHhCCchHHHHhhhcC-CChHHHHHHHHHHHHhHccCC---hHHHHHHHhcCcHHHHHHhh-ccCCHHHHHHH
Q psy12594 30 KPSTIHFLKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKH---VDIRQEVLERNLVALVLKDL-TKQNKHYKKTA 104 (542)
Q Consensus 30 ~~~~~~~l~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~---~~~~~~i~~~~~l~~Lv~~L-~~~~~~~~~~a 104 (542)
+++.-+.+.+.+++..++++++. ....++.+.+..+.-+. .+ +...-.+...+.+..++..- .-.++++...=
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLi--qNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yY 92 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILI--QNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYY 92 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--HhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHH
Confidence 45566778899999999999987 55688888888888887 44 33444445567777777643 33567777777
Q ss_pred HHHHHHHhcC-Chhhhh-Hhh--cCChHHH---HhhhcCCCHHHHHHHHHHHHHh
Q psy12594 105 LHMLTCVAQQ-DERCAG-LIE--DKDLDSI---ISSLHDFDPDTRANAALALGGL 152 (542)
Q Consensus 105 ~~~L~~l~~~-~~~~~~-~~~--~g~v~~L---v~lL~~~~~~~~~~a~~~L~~l 152 (542)
+..|..++-. +++... +.. .+-.|.+ +++.+++|+.+|.++-..+-++
T Consensus 93 IsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 93 ISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 7788888743 323333 332 2444544 5566788888887665544443
No 399
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=22.94 E-value=4.1e+02 Score=21.49 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHh-hchHH-HHHhhcCC----
Q psy12594 190 ALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTIAD-GATTL-AVEHLTYP---- 262 (542)
Q Consensus 190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~~~i~-L~~lL~~~---- 262 (542)
=|.+++..++.....+ ++.|.+-|++.++.|+..++.+|-++|...+ .++..+.. ..++. +...-..+
T Consensus 24 Eia~~t~~s~~~~~ei-----~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQEL-----LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHHH-----HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 3455555454444444 3788888888888999999999999998654 44444433 33444 44443322
Q ss_pred ----ChhHHHHHHHHHHHHh
Q psy12594 263 ----HGLVQKNAATLLRDMC 278 (542)
Q Consensus 263 ----~~~v~~~a~~~L~~L~ 278 (542)
...||..|-.++..+.
T Consensus 99 Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcchhHHHHHHHHHHHHHHh
Confidence 2457777766665554
No 400
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=22.78 E-value=4.8e+02 Score=22.20 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=52.0
Q ss_pred HHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhc-CChHHHHh-hhcCCC--HHHHHHHHHHHHHhhcC
Q psy12594 80 VLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED-KDLDSIIS-SLHDFD--PDTRANAALALGGLAKD 155 (542)
Q Consensus 80 i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~v~~Lv~-lL~~~~--~~~~~~a~~~L~~l~~~ 155 (542)
+++....+.+++.+.++++.+-..++.++..+...-...-+ .+. -.++.++. ++.+.. ..-|..++.++..++.+
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk-~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLK-LELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 34556777888887777788888899998887633111111 111 13344444 555444 46778899999999985
Q ss_pred ChHHHHHHHH
Q psy12594 156 NKHFAERIVQ 165 (542)
Q Consensus 156 ~~~~~~~i~~ 165 (542)
..-..+..++
T Consensus 148 p~~l~~lf~N 157 (168)
T PF12783_consen 148 PQFLVDLFVN 157 (168)
T ss_pred hhHHHHHHHH
Confidence 5444444433
No 401
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=22.63 E-value=2.1e+02 Score=18.48 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=18.7
Q ss_pred hHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhH
Q psy12594 416 LEQMLLGNVSEELLASILCAFAKILPCDPVARRS 449 (542)
Q Consensus 416 L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~ 449 (542)
+.+.|. ..++......+-+|..++...++..+.
T Consensus 12 l~~fl~-~~~~~~~~~llpvi~tlL~fs~~e~~~ 44 (46)
T PF01465_consen 12 LLQFLE-SREPSEREQLLPVIATLLKFSPEEKQK 44 (46)
T ss_dssp HHHHHT-TSS---HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHhc-CCchhhHHHHHHHHHHHHCCCHHHHHh
Confidence 445565 556667777778888888877765443
No 402
>KOG2229|consensus
Probab=22.24 E-value=8.9e+02 Score=25.10 Aligned_cols=135 Identities=12% Similarity=0.052 Sum_probs=75.6
Q ss_pred hHHHHHhccCC----CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHH----HHHHHHHhcCC
Q psy12594 169 LPPLVQILASP----QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADA----FLCLADIAKDS 240 (542)
Q Consensus 169 i~~L~~ll~~~----~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a----~~~L~~l~~~~ 240 (542)
-..|.++|+.. +++++...+.+|.-|-. +..+.-...+..+..++.-.+..+|..+ +..+.|+-...
T Consensus 18 P~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN-----k~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~ 92 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPPELREKIVKALILLRN-----KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKH 92 (616)
T ss_pred hHHHHHHHHhccccCCHHHHHHHHHHHHHHhc-----cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhc
Confidence 34566777654 47899988888876654 2223334556778888887777665544 33444432221
Q ss_pred hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHH
Q psy12594 241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMAL 316 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L 316 (542)
. ..-.....-. +..+|..+++.--..++..++.|-+... .. +...+..+....-+.++.+...+++.+
T Consensus 93 k---n~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~i---W~--d~~tV~i~~~acf~~~~ki~vs~l~Ff 161 (616)
T KOG2229|consen 93 K---NDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNI---WN--DSKTVNIITTACFSKVPKILVSGLRFF 161 (616)
T ss_pred c---cchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcc---cc--cchhHHHHHHHHhccCcHHHHhhhHHh
Confidence 1 1111122334 7788888887655555555555543321 00 233344444446667777777777655
No 403
>KOG1791|consensus
Probab=22.08 E-value=1.4e+03 Score=27.46 Aligned_cols=203 Identities=14% Similarity=0.097 Sum_probs=114.5
Q ss_pred HHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh-hhHhhcCChHHHHhhhcC----CCHHHHHHHHHHH
Q psy12594 75 DIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC-AGLIEDKDLDSIISSLHD----FDPDTRANAALAL 149 (542)
Q Consensus 75 ~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~v~~Lv~lL~~----~~~~~~~~a~~~L 149 (542)
..+..++..|.+..+...+++.++.++..+.+++...-.+-+.. ......-.+..+..+.+. +++.+-....-..
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 34447778899999999999999999999988888776665443 223222233444444432 2333222211111
Q ss_pred ---HHhhcCC-hHH---------HHHHHHcCChHHHHHhccCCCHh---HHHHHHHHHHHHhcCCHHHHHHhhhCCChHH
Q psy12594 150 ---GGLAKDN-KHF---------AERIVQCGALPPLVQILASPQLS---LKHAAAFALDGIVKHSPELAESASDCDVIPL 213 (542)
Q Consensus 150 ---~~l~~~~-~~~---------~~~i~~~g~i~~L~~ll~~~~~~---~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~ 213 (542)
..+.... ... ...+++-..+|.+-+++-+..++ .|......+..... ++...+.....+....
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glk-s~~D~ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLK-SCPDYQLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhc-CchhhhHHhhcCcceE
Confidence 1222111 111 12344555678787777765433 34444444444444 2334444555777777
Q ss_pred HHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHH-HHHHHHHHh
Q psy12594 214 LIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKN-AATLLRDMC 278 (542)
Q Consensus 214 L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~-a~~~L~~L~ 278 (542)
++....++ +...+.....+|.+-........+++...|+.. +.+++.++ .+..+.. ....+..+-
T Consensus 1589 ~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1589 LLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLW 1659 (1758)
T ss_pred eehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHH
Confidence 77777754 444555566666665555433445556678888 99999988 4555544 444444443
No 404
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.78 E-value=4e+02 Score=20.91 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=46.2
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhcc------CCCHhHHHHHHHHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQILA------SPQLSLKHAAAFALDGI 194 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~------~~~~~~~~~a~~~L~nl 194 (542)
++..|..-|++.++.+...|+..|-.+... ++.+...+....++..++++.. ..+..+|..+...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 566777777888899999999999888843 4556666666655555554311 12467888777766544
No 405
>KOG2153|consensus
Probab=21.51 E-value=4.1e+02 Score=28.25 Aligned_cols=69 Identities=6% Similarity=0.030 Sum_probs=46.7
Q ss_pred CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
..+..++.++++....++..++.++..+..++.. .-...+++..+-.+++..+-++...++.++.+|-.
T Consensus 324 kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~---g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri 392 (704)
T KOG2153|consen 324 KIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNG---GSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRI 392 (704)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCc---cchhHHHHHHHHHHhhhhcccchhhHHHHHHhcch
Confidence 4566777888888777888888889988864431 11122346666677777666677777777776654
No 406
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=21.20 E-value=1.8e+02 Score=19.99 Aligned_cols=21 Identities=10% Similarity=0.223 Sum_probs=16.4
Q ss_pred cCCCChHHHHHHHHHHHHHHh
Q psy12594 388 QTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 388 ~~~~~~~v~~~a~~aL~nl~~ 408 (542)
+++-+.++|++|++|-.||+.
T Consensus 40 d~~Lp~~vRE~AAfAAANLli 60 (66)
T PF06786_consen 40 DEALPEDVREQAAFAAANLLI 60 (66)
T ss_pred ccccCHHHHHHHHHHHHHHHH
Confidence 444457899999999999864
No 407
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=21.09 E-value=1.9e+02 Score=21.55 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=39.0
Q ss_pred CChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh----cCCCHHHHHHHHHHH
Q psy12594 167 GALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL----NNDEVNVKADAFLCL 233 (542)
Q Consensus 167 g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L 233 (542)
.++.++..++.. .+.++|+..+.++.++..... .-+..| -+.+...+ .+.+.++...|..++
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 346677777544 468999999999999987332 222234 34444443 345666776666554
No 408
>PRK04964 hypothetical protein; Provisional
Probab=20.98 E-value=1.9e+02 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=16.3
Q ss_pred cCCCChHHHHHHHHHHHHHHh
Q psy12594 388 QTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 388 ~~~~~~~v~~~a~~aL~nl~~ 408 (542)
++.-..++|++|++|-.||+.
T Consensus 40 d~~Lp~~vRe~AAfAAANLli 60 (66)
T PRK04964 40 DEALPESVREKAAYAAANLLV 60 (66)
T ss_pred cccCCHHHHHHHHHHHHHHHh
Confidence 344456899999999999864
No 409
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.93 E-value=4.2e+02 Score=20.78 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594 138 DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217 (542)
Q Consensus 138 ~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 217 (542)
.+.+...+.|++.+... ... ++..+.+.++...+.-+..++..+-.++..........+.....+.+...
T Consensus 18 ~~~I~~lt~~a~~~~~~-----a~~-----iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 18 QPSIQTLTKLAIENRKH-----AKE-----IVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred HHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 35666666676666532 222 35556666666666777778888887877543333444444446777777
Q ss_pred hcCCCHHHHHHHHHHH
Q psy12594 218 LNNDEVNVKADAFLCL 233 (542)
Q Consensus 218 l~~~~~~~~~~a~~~L 233 (542)
....+++++......+
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 7666777776555444
No 410
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=20.36 E-value=5.7e+02 Score=22.11 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhh
Q psy12594 55 PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL 134 (542)
Q Consensus 55 ~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL 134 (542)
-++|..|..++..+........ .+ ..+++.+..-|++ +.+++..+..+|.+++...|....-.-...++.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~--~~--~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI--DI--SEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS---H--HHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--CH--HHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999972211111 01 1235566677766 89999999999999987765544422335677777666
Q ss_pred cCC---C---------HHHHHHHHHHHHHh
Q psy12594 135 HDF---D---------PDTRANAALALGGL 152 (542)
Q Consensus 135 ~~~---~---------~~~~~~a~~~L~~l 152 (542)
+.. + .+....+++++..+
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 421 1 24455566666555
Done!