Query psy12594
Match_columns 542
No_of_seqs 399 out of 2908
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 23:17:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 4.6E-46 1.6E-50 384.7 40.8 395 85-483 58-481 (510)
2 3tpo_A Importin subunit alpha- 100.0 5E-45 1.7E-49 379.3 41.7 396 84-483 76-500 (529)
3 3now_A UNC-45 protein, SD10334 100.0 2E-42 6.9E-47 364.3 38.9 463 8-480 246-782 (810)
4 2z6h_A Catenin beta-1, beta-ca 100.0 8.4E-42 2.9E-46 363.9 42.3 445 14-469 28-515 (644)
5 1jdh_A Beta-catenin; beta-cate 100.0 1.4E-41 4.6E-46 355.2 40.8 454 14-478 31-528 (529)
6 4b8j_A Importin subunit alpha- 100.0 3.5E-41 1.2E-45 351.6 42.6 399 83-485 73-501 (528)
7 3ul1_B Importin subunit alpha- 100.0 2.1E-41 7.2E-46 349.9 40.3 398 42-443 58-480 (510)
8 3tpo_A Importin subunit alpha- 100.0 1.5E-40 5E-45 345.7 42.5 398 41-442 76-498 (529)
9 3now_A UNC-45 protein, SD10334 100.0 9E-42 3.1E-46 359.4 32.0 419 16-441 306-782 (810)
10 1wa5_B Importin alpha subunit; 100.0 9.1E-40 3.1E-44 340.8 43.6 399 82-484 85-514 (530)
11 2z6g_A B-catenin; FULL-length, 100.0 1.6E-39 5.6E-44 351.4 39.6 458 14-480 164-663 (780)
12 2jdq_A Importin alpha-1 subuni 100.0 2.9E-39 9.9E-44 330.5 36.7 417 42-484 21-447 (450)
13 4b8j_A Importin subunit alpha- 100.0 3.9E-38 1.3E-42 328.5 43.7 398 41-443 74-498 (528)
14 1wa5_B Importin alpha subunit; 100.0 4.6E-38 1.6E-42 327.9 42.8 402 39-444 85-513 (530)
15 1jdh_A Beta-catenin; beta-cate 100.0 9E-38 3.1E-42 326.2 35.6 434 37-480 13-489 (529)
16 1xm9_A Plakophilin 1; armadill 100.0 2.6E-38 8.8E-43 321.8 30.3 354 126-485 3-454 (457)
17 3l6x_A Catenin delta-1; cateni 100.0 1.7E-37 5.8E-42 316.6 36.1 365 38-408 45-476 (584)
18 2z6h_A Catenin beta-1, beta-ca 100.0 2.8E-36 9.6E-41 321.4 42.2 436 14-463 71-546 (644)
19 3nmz_A APC variant protein; pr 100.0 3.1E-37 1.1E-41 308.3 31.9 360 41-409 32-451 (458)
20 1xm9_A Plakophilin 1; armadill 100.0 6.2E-37 2.1E-41 311.6 30.6 360 42-409 3-450 (457)
21 2z6g_A B-catenin; FULL-length, 100.0 2.2E-35 7.6E-40 319.1 40.4 436 14-463 207-682 (780)
22 2jdq_A Importin alpha-1 subuni 100.0 9.7E-35 3.3E-39 296.9 40.4 388 15-408 35-443 (450)
23 3l6x_A Catenin delta-1; cateni 100.0 5.5E-36 1.9E-40 305.5 29.8 375 121-503 44-496 (584)
24 3nmz_A APC variant protein; pr 100.0 1.1E-35 3.9E-40 297.0 29.6 347 19-368 48-454 (458)
25 3nmw_A APC variant protein; AR 100.0 2.5E-30 8.7E-35 251.1 28.7 267 139-409 46-335 (354)
26 3nmw_A APC variant protein; AR 100.0 3.6E-30 1.2E-34 250.0 27.4 270 55-326 46-339 (354)
27 4hxt_A De novo protein OR329; 100.0 2.4E-27 8.1E-32 222.2 27.9 242 125-367 2-244 (252)
28 4hxt_A De novo protein OR329; 100.0 3.4E-27 1.2E-31 221.1 28.0 241 84-324 2-244 (252)
29 4db8_A Armadillo-repeat protei 100.0 6.6E-27 2.3E-31 219.2 25.6 239 125-364 12-251 (252)
30 4db8_A Armadillo-repeat protei 100.0 1.7E-26 5.7E-31 216.5 27.1 239 40-279 11-251 (252)
31 3opb_A SWI5-dependent HO expre 99.9 2.4E-25 8.1E-30 230.0 31.2 391 36-442 250-729 (778)
32 3opb_A SWI5-dependent HO expre 99.9 3.4E-25 1.2E-29 228.8 26.3 382 18-408 274-728 (778)
33 4db6_A Armadillo repeat protei 99.9 1.3E-23 4.3E-28 191.0 24.6 200 122-321 9-209 (210)
34 4db6_A Armadillo repeat protei 99.9 1.6E-23 5.6E-28 190.2 25.0 198 82-279 10-209 (210)
35 1xqr_A HSPBP1 protein; armadil 99.9 1.1E-21 3.7E-26 185.3 25.7 224 139-363 54-286 (296)
36 1xqr_A HSPBP1 protein; armadil 99.9 2E-21 6.8E-26 183.5 25.2 221 56-278 55-286 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 6E-22 2E-26 178.8 19.5 196 125-322 8-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.9 3.9E-21 1.3E-25 173.4 16.7 194 85-280 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 3.5E-19 1.2E-23 187.9 23.4 410 41-478 164-585 (588)
40 4fdd_A Transportin-1; heat rep 99.8 3.1E-19 1E-23 196.5 22.2 381 42-439 91-510 (852)
41 4fdd_A Transportin-1; heat rep 99.8 2E-18 6.9E-23 190.0 28.1 409 5-443 14-473 (852)
42 1b3u_A Protein (protein phosph 99.8 1.3E-18 4.4E-23 183.5 24.6 399 14-439 178-585 (588)
43 3grl_A General vesicular trans 99.8 2.4E-16 8.3E-21 158.8 38.1 413 41-462 21-525 (651)
44 2vgl_B AP-2 complex subunit be 99.8 1E-17 3.5E-22 175.9 23.6 373 40-445 12-423 (591)
45 3grl_A General vesicular trans 99.8 3.6E-15 1.2E-19 150.4 40.6 352 38-389 119-529 (651)
46 1oyz_A Hypothetical protein YI 99.8 1.2E-16 4.1E-21 151.7 26.1 258 38-361 20-279 (280)
47 2vgl_B AP-2 complex subunit be 99.7 2.1E-16 7.3E-21 165.8 24.6 368 42-445 122-497 (591)
48 1oyz_A Hypothetical protein YI 99.7 5.1E-16 1.7E-20 147.3 24.2 258 122-438 20-279 (280)
49 1w63_A Adapter-related protein 99.7 8.9E-15 3E-19 154.1 28.4 390 42-479 71-489 (618)
50 1w63_A Adapter-related protein 99.7 6.1E-15 2.1E-19 155.3 23.9 362 42-446 108-545 (618)
51 2bpt_A Importin beta-1 subunit 99.6 1.2E-14 4.1E-19 160.4 24.2 414 14-443 195-670 (861)
52 2bpt_A Importin beta-1 subunit 99.6 6.8E-14 2.3E-18 154.3 28.9 385 43-443 97-531 (861)
53 1qgr_A Protein (importin beta 99.6 2.7E-14 9.3E-19 157.8 23.9 380 46-442 95-538 (876)
54 1ibr_B P95, importin beta-1 su 99.6 1.1E-14 3.7E-19 148.6 19.2 375 16-409 17-438 (462)
55 1ibr_B P95, importin beta-1 su 99.6 2.2E-14 7.5E-19 146.3 19.5 373 47-442 7-438 (462)
56 1qgr_A Protein (importin beta 99.6 4.1E-13 1.4E-17 148.3 28.8 404 16-441 17-479 (876)
57 3ltm_A Alpha-REP4; protein eng 99.6 1.1E-13 3.7E-18 125.2 18.2 188 39-281 17-205 (211)
58 3ltj_A Alpharep-4; protein eng 99.5 2.3E-13 7.7E-18 122.1 17.8 184 40-278 13-197 (201)
59 2vgl_A Adaptor protein complex 99.5 1.3E-11 4.5E-16 129.4 31.7 401 41-480 74-509 (621)
60 3ltm_A Alpha-REP4; protein eng 99.5 5.6E-13 1.9E-17 120.5 18.0 189 82-324 17-206 (211)
61 1u6g_C TIP120 protein, CAND1; 99.5 1.7E-12 5.9E-17 148.4 25.2 412 15-440 63-547 (1230)
62 3ltj_A Alpharep-4; protein eng 99.5 8E-13 2.7E-17 118.5 17.9 183 84-320 14-197 (201)
63 1u6g_C TIP120 protein, CAND1; 99.5 6.1E-13 2.1E-17 152.1 18.9 384 43-443 8-465 (1230)
64 2vgl_A Adaptor protein complex 99.5 7E-12 2.4E-16 131.5 24.9 390 16-445 127-554 (621)
65 4gmo_A Putative uncharacterize 99.2 2.4E-10 8.3E-15 121.5 16.8 193 126-320 35-257 (684)
66 4gmo_A Putative uncharacterize 99.1 2.5E-10 8.6E-15 121.3 13.9 193 211-407 36-257 (684)
67 2db0_A 253AA long hypothetical 99.1 2.5E-08 8.6E-13 82.6 22.1 213 166-407 31-245 (253)
68 4ady_A RPN2, 26S proteasome re 99.1 9.3E-08 3.2E-12 101.6 29.1 307 41-406 392-717 (963)
69 3tjz_B Coatomer subunit gamma; 99.1 4.9E-09 1.7E-13 100.2 17.6 273 85-401 69-346 (355)
70 2db0_A 253AA long hypothetical 99.1 1.4E-07 4.7E-12 78.3 23.1 214 39-279 30-246 (253)
71 3tjz_B Coatomer subunit gamma; 99.0 1.1E-08 3.8E-13 97.8 18.0 298 17-359 45-348 (355)
72 4ady_A RPN2, 26S proteasome re 99.0 3.8E-08 1.3E-12 104.5 23.1 267 126-443 393-678 (963)
73 3b2a_A TON_1937, putative unch 98.8 2.8E-07 9.4E-12 80.1 15.3 186 40-240 32-220 (265)
74 1ho8_A Vacuolar ATP synthase s 98.7 4E-06 1.4E-10 82.0 24.6 318 83-409 76-477 (480)
75 2qk2_A LP04448P; mini spindles 98.7 2.9E-08 9.8E-13 91.4 8.3 184 127-321 17-205 (242)
76 1ho8_A Vacuolar ATP synthase s 98.7 1.4E-05 4.9E-10 78.1 27.3 320 39-364 75-476 (480)
77 2qk2_A LP04448P; mini spindles 98.7 1.2E-07 4E-12 87.2 12.1 182 87-279 18-205 (242)
78 3b2a_A TON_1937, putative unch 98.6 1.1E-06 3.8E-11 76.3 15.1 184 83-280 32-219 (265)
79 1te4_A Conserved protein MTH18 98.6 3.9E-09 1.3E-13 87.0 -0.7 119 124-276 11-130 (131)
80 1te4_A Conserved protein MTH18 98.6 8.9E-09 3E-13 84.8 0.4 121 40-194 11-131 (131)
81 2x1g_F Cadmus; transport prote 98.5 7.2E-06 2.5E-10 91.3 22.2 395 16-441 101-615 (971)
82 2qk1_A Protein STU2; STU2P, XM 98.5 3.4E-06 1.2E-10 77.4 15.0 190 88-279 20-220 (249)
83 2qk1_A Protein STU2; STU2P, XM 98.4 3.4E-07 1.2E-11 84.1 6.6 192 129-321 20-220 (249)
84 1wa5_C Importin alpha RE-expor 98.3 0.00049 1.7E-08 76.4 31.7 337 56-408 261-670 (960)
85 1wa5_C Importin alpha RE-expor 98.3 9.9E-05 3.4E-09 81.9 25.1 332 56-410 376-750 (960)
86 2x19_B Importin-13; nuclear tr 98.3 0.00035 1.2E-08 77.7 28.7 399 16-443 119-601 (963)
87 2iw3_A Elongation factor 3A; a 98.2 3.3E-05 1.1E-09 83.3 18.2 294 49-362 22-322 (986)
88 3m1i_C Exportin-1; heat repeat 98.2 0.0033 1.1E-07 70.4 34.8 371 16-410 116-571 (1049)
89 3dad_A FH1/FH2 domain-containi 98.1 0.00013 4.5E-09 67.8 16.6 151 172-322 123-287 (339)
90 3dad_A FH1/FH2 domain-containi 98.1 0.00018 6.3E-09 66.8 17.5 153 213-365 122-287 (339)
91 4hat_C Exportin-1; heat repeat 98.0 0.0089 3E-07 66.0 33.0 382 40-444 137-621 (1023)
92 2x1g_F Cadmus; transport prote 98.0 0.0011 3.7E-08 73.7 26.1 373 13-408 257-722 (971)
93 2iw3_A Elongation factor 3A; a 98.0 0.0012 4.2E-08 71.3 24.3 295 88-408 18-324 (986)
94 2x19_B Importin-13; nuclear tr 98.0 0.0031 1.1E-07 70.0 28.1 341 41-399 241-637 (963)
95 3ibv_A Exportin-T; karyopherin 97.9 0.0014 4.9E-08 72.1 22.7 305 96-411 205-569 (980)
96 3ibv_A Exportin-T; karyopherin 97.8 0.0041 1.4E-07 68.5 25.0 297 18-325 211-570 (980)
97 3m1i_C Exportin-1; heat repeat 97.8 0.04 1.4E-06 61.7 32.5 217 4-239 16-264 (1049)
98 1lrv_A LRV, leucine-rich repea 97.6 0.0001 3.5E-09 66.7 6.9 67 214-317 175-242 (244)
99 2fv2_A RCD1 required for cell 97.4 0.021 7.2E-07 50.6 19.2 182 17-236 72-266 (268)
100 3oc3_A Helicase MOT1, MOT1; re 97.4 0.00046 1.6E-08 68.0 8.3 240 85-359 175-431 (800)
101 2fv2_A RCD1 required for cell 97.3 0.015 5.1E-07 51.6 16.9 218 54-277 14-266 (268)
102 1lrv_A LRV, leucine-rich repea 97.3 0.00045 1.5E-08 62.5 6.9 139 129-359 102-241 (244)
103 1upk_A MO25 protein; transfera 97.3 0.023 7.7E-07 52.8 18.1 212 204-421 73-296 (341)
104 3oc3_A Helicase MOT1, MOT1; re 97.2 0.0015 5.1E-08 64.5 10.1 241 126-403 175-431 (800)
105 4ffb_C Protein STU2; tubulin f 97.1 0.021 7.3E-07 52.9 17.2 186 89-280 14-213 (278)
106 3l9t_A Putative uncharacterize 97.1 0.012 4.1E-07 51.8 13.6 143 127-290 73-218 (240)
107 4hat_C Exportin-1; heat repeat 97.0 0.087 3E-06 58.2 23.0 138 96-241 465-621 (1023)
108 4ffb_C Protein STU2; tubulin f 96.9 0.02 7E-07 53.1 15.2 177 15-197 24-213 (278)
109 3gjx_A Exportin-1; transport, 96.9 0.71 2.4E-05 51.0 34.2 381 41-444 150-647 (1073)
110 2of3_A ZYG-9; multifunctional 96.8 0.008 2.7E-07 54.6 10.8 184 42-239 47-237 (266)
111 1upk_A MO25 protein; transfera 96.8 0.33 1.1E-05 45.1 21.9 201 161-365 72-284 (341)
112 3u0r_A Apoptosis inhibitor 5; 96.7 0.13 4.5E-06 50.1 19.0 256 88-366 33-300 (507)
113 2of3_A ZYG-9; multifunctional 96.7 0.017 6E-07 52.4 12.2 178 128-320 49-235 (266)
114 1lsh_A Lipovitellin (LV-1N, LV 96.6 0.046 1.6E-06 60.7 17.1 166 86-281 393-578 (1056)
115 3l9t_A Putative uncharacterize 96.5 0.073 2.5E-06 46.9 14.3 137 91-247 78-216 (240)
116 1lsh_A Lipovitellin (LV-1N, LV 96.3 0.22 7.7E-06 55.3 20.5 176 252-447 392-582 (1056)
117 3ebb_A Phospholipase A2-activa 95.6 0.2 6.8E-06 46.6 13.6 133 255-387 152-286 (304)
118 3u0r_A Apoptosis inhibitor 5; 95.6 0.13 4.4E-06 50.2 12.4 249 136-411 39-301 (507)
119 3ebb_A Phospholipase A2-activa 95.5 0.46 1.6E-05 44.2 15.7 156 128-286 106-270 (304)
120 3a6p_A Exportin-5; exportin-5, 95.3 0.45 1.5E-05 53.8 17.5 257 51-320 57-379 (1204)
121 3c2g_A SYS-1 protein; beta-cat 95.0 0.33 1.1E-05 45.0 12.4 287 191-480 266-617 (619)
122 3c2g_A SYS-1 protein; beta-cat 94.3 0.48 1.6E-05 43.9 11.6 132 274-407 266-402 (619)
123 3gjx_A Exportin-1; transport, 94.2 8.4 0.00029 42.6 24.7 139 96-242 491-648 (1073)
124 3a6p_A Exportin-5; exportin-5, 93.9 5.7 0.00019 44.9 22.2 286 96-407 25-379 (1204)
125 3eg5_B Protein diaphanous homo 92.9 3.5 0.00012 39.7 16.1 149 35-187 104-285 (383)
126 2f31_A Diaphanous protein homo 92.9 2 6.9E-05 38.2 13.4 152 33-187 36-219 (233)
127 2bnx_A Diaphanous protein homo 90.1 6.7 0.00023 37.8 14.7 150 34-187 41-223 (386)
128 3eg5_B Protein diaphanous homo 89.4 16 0.00054 35.1 19.6 166 61-227 87-283 (383)
129 3o2t_A Symplekin; heat repeat, 88.1 14 0.00048 35.3 14.9 106 208-320 62-182 (386)
130 2f31_A Diaphanous protein homo 87.9 14 0.00047 32.7 18.4 154 74-228 34-218 (233)
131 3ldz_A STAM-1, signal transduc 86.2 1.9 6.4E-05 34.8 6.7 72 41-112 42-113 (140)
132 2npp_B PP2A, B subunit, serine 85.0 29 0.001 33.8 15.6 237 30-284 151-404 (449)
133 1x5b_A Signal transducing adap 84.6 2.8 9.5E-05 34.8 7.2 73 41-113 52-125 (163)
134 1mhq_A ADP-ribosylation factor 84.3 3.1 0.00011 33.8 7.2 73 41-113 38-116 (148)
135 3o2t_A Symplekin; heat repeat, 84.2 30 0.001 33.1 25.5 89 56-153 40-128 (386)
136 3g2s_A C-terminal fragment of 84.2 3.3 0.00011 33.7 7.3 73 41-113 48-126 (149)
137 3gs3_A Symplekin, LD45768P; he 80.8 31 0.0011 30.9 20.8 126 140-277 30-171 (257)
138 1juq_A ADP-ribosylation factor 80.5 3.9 0.00013 34.2 6.6 72 42-113 51-128 (171)
139 3qml_C Protein SLS1, nucleotid 80.5 16 0.00054 33.5 10.8 133 139-278 42-188 (315)
140 3gs3_A Symplekin, LD45768P; he 79.9 33 0.0011 30.7 22.0 202 56-288 30-252 (257)
141 3fga_B Serine/threonine-protei 79.8 37 0.0013 32.5 13.8 236 157-408 119-366 (403)
142 3fga_B Serine/threonine-protei 79.5 21 0.00073 34.2 12.1 230 34-281 122-368 (403)
143 3qml_C Protein SLS1, nucleotid 78.5 20 0.0007 32.7 10.9 142 46-195 27-188 (315)
144 2bnx_A Diaphanous protein homo 77.7 51 0.0017 31.6 18.5 154 74-228 38-222 (386)
145 3zyq_A Hepatocyte growth facto 74.0 4.9 0.00017 35.4 5.7 73 41-113 45-118 (226)
146 1dvp_A HRS, hepatocyte growth 67.5 8.1 0.00028 33.8 5.6 72 41-112 42-114 (220)
147 2b6c_A Hypothetical protein EF 66.4 65 0.0022 27.9 12.0 139 128-290 58-199 (220)
148 1vsy_5 Proteasome activator BL 65.6 4.9 0.00017 44.0 4.6 186 42-244 761-972 (997)
149 1elk_A Target of MYB1; superhe 65.5 18 0.00061 29.6 7.0 72 41-112 53-129 (157)
150 3ldz_A STAM-1, signal transduc 63.1 42 0.0015 26.7 8.7 68 211-278 44-113 (140)
151 1mhq_A ADP-ribosylation factor 61.5 46 0.0016 26.8 8.6 69 211-279 40-116 (148)
152 2xpp_A IWS1, ECU08_0440; trans 61.0 53 0.0018 26.3 8.7 80 324-407 51-135 (145)
153 1x5b_A Signal transducing adap 58.6 28 0.00095 28.7 7.0 69 211-279 54-125 (163)
154 1juq_A ADP-ribosylation factor 53.0 50 0.0017 27.4 7.7 69 211-279 52-128 (171)
155 3jxy_A Alkylpurine DNA glycosy 52.2 1E+02 0.0035 26.9 10.1 140 128-291 64-207 (232)
156 3s4w_B Protein FACD2, fanconi 50.6 3.2E+02 0.011 30.8 15.7 168 181-364 324-507 (1323)
157 3g2s_A C-terminal fragment of 49.2 1E+02 0.0035 24.8 9.5 69 211-279 50-126 (149)
158 3jxy_A Alkylpurine DNA glycosy 48.4 1.2E+02 0.0041 26.4 10.0 140 45-208 65-207 (232)
159 3gae_A Protein DOA1; UFD3, CDC 47.0 22 0.00074 31.8 4.8 103 51-157 100-220 (253)
160 2b6c_A Hypothetical protein EF 43.6 1.6E+02 0.0054 25.4 11.3 140 44-206 58-198 (220)
161 3nfq_A Transcription factor IW 42.6 1.4E+02 0.0048 24.5 8.8 81 323-407 65-150 (170)
162 3zyq_A Hepatocyte growth facto 41.6 36 0.0012 29.7 5.3 69 211-279 47-118 (226)
163 1vsy_5 Proteasome activator BL 40.5 25 0.00085 38.5 4.9 182 42-238 134-365 (997)
164 1dvp_A HRS, hepatocyte growth 38.3 56 0.0019 28.3 6.1 68 211-278 44-114 (220)
165 3pst_A Protein DOA1; protein d 37.9 1.5E+02 0.0052 28.5 9.3 104 51-158 272-393 (425)
166 3gae_A Protein DOA1; UFD3, CDC 37.4 51 0.0017 29.4 5.7 99 16-118 106-222 (253)
167 3vld_A DNA mismatch repair pro 36.6 1.4E+02 0.0047 29.4 8.8 110 122-238 113-225 (500)
168 3rru_A TOM1L1 protein; structu 33.1 62 0.0021 26.2 5.0 73 41-113 53-130 (152)
169 3pst_A Protein DOA1; protein d 32.9 3.2E+02 0.011 26.3 10.6 131 101-241 243-392 (425)
170 3l3f_X Protein DOA1, DOA1/UFD3 31.3 1.1E+02 0.0038 28.8 7.1 103 52-158 210-330 (362)
171 2jak_A Serine/threonine-protei 30.1 2.1E+02 0.0073 27.2 8.9 127 158-286 165-295 (392)
172 2npp_B PP2A, B subunit, serine 29.4 4E+02 0.014 25.9 17.3 234 160-407 155-398 (449)
173 4atg_A TAF6; transcription, TF 27.8 57 0.0019 27.7 4.0 74 334-408 87-162 (196)
174 3l3f_X Protein DOA1, DOA1/UFD3 26.8 1.5E+02 0.0051 27.9 7.1 131 101-241 180-329 (362)
175 1elk_A Target of MYB1; superhe 26.1 2.6E+02 0.0088 22.5 8.5 76 334-409 53-131 (157)
176 2jak_A Serine/threonine-protei 25.8 3.1E+02 0.011 26.0 9.2 80 75-154 165-245 (392)
177 4flb_A Regulation of nuclear P 24.8 41 0.0014 26.4 2.5 59 381-442 12-70 (132)
178 1fyh_A Interferon-gamma; cytok 22.9 3.3E+02 0.011 23.8 7.8 107 294-412 9-123 (258)
179 3s4w_B Protein FACD2, fanconi 22.8 5.3E+02 0.018 29.1 11.4 100 48-153 407-506 (1323)
180 1fyh_A Interferon-gamma; cytok 20.8 4.1E+02 0.014 23.2 8.0 183 200-409 40-244 (258)
181 3u85_B Histone-lysine N-methyl 20.5 24 0.00081 17.2 0.2 9 521-529 9-17 (21)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.6e-46 Score=384.74 Aligned_cols=395 Identities=16% Similarity=0.231 Sum_probs=355.7
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFAE 161 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~ 161 (542)
.++.+++.+.+++++.+..|+..++++.+. ++.+..+++.|++|.|+++|++. ++.++..|+|+|+|++.++++.++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 489999999999999999999999997643 45566699999999999999755 589999999999999999999999
Q ss_pred HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC-----HHHHHHHHHHHHHH
Q psy12594 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE-----VNVKADAFLCLADI 236 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l 236 (542)
.+++.|++|.|+++|+++++.+++.|+|+|+||+.++++.+..+.+.|+++.|+.++..++ ..+++.++|+++++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988999999999999999999998654 45789999999999
Q ss_pred hcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHH
Q psy12594 237 AKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA 315 (542)
Q Consensus 237 ~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~ 315 (542)
+.+...........++++ |+.++.+++++++..++|+|++|+.+..+..+.+.+.|+++.|+.++.+++..++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 987654555555578999 9999999999999999999999999998888888899999999999999999999999999
Q ss_pred HhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594 316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL 395 (542)
Q Consensus 316 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v 395 (542)
|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.+.+.+++.|+++.|+.++.++ +.++
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v 374 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKT 374 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHH
Confidence 9999999999999999999999999999985 469999999999999999999999999999999999999987 5799
Q ss_pred HHHHHHHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCC------hhhhhHHHHhcchHH
Q psy12594 396 KSKCKNALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCD------PVARRSFVTSHCLRK 458 (542)
Q Consensus 396 ~~~a~~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~------~~~~~~~~~~g~~~~ 458 (542)
|++|+|+|+|++. +.+.+++|+++|. +.|++++..++++|.|++..+ ++.+..|.++||+++
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 453 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH
Confidence 9999999999963 3588999999999 999999999999999998643 234457889999999
Q ss_pred hhhcC--CCCcHH-HHHHHHhccCccch
Q psy12594 459 VQEIE--PTPEIA-PHLKTINACFPNEV 483 (542)
Q Consensus 459 l~~l~--~~~~~~-~a~~~l~~~~~~~~ 483 (542)
|+.++ +|.+++ +|..+|++||+++.
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999 788888 59999999998554
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=5e-45 Score=379.27 Aligned_cols=396 Identities=16% Similarity=0.225 Sum_probs=355.2
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKHFA 160 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~ 160 (542)
..++.+++.+.++++..+..|+..++++.+. ++....+++.|++|.|+++|... ++.++..|+|+|++++.+++...
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999999999999997543 34455589999999999999755 59999999999999999999999
Q ss_pred HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC-----HHHHHHHHHHHHH
Q psy12594 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE-----VNVKADAFLCLAD 235 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~ 235 (542)
..+++.|++|.|+.++.++++.+++.|+|+|+||+.++++.+..+.+.|+++.|+.++..++ ..+++.++|++++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999998653 4578999999999
Q ss_pred HhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHH
Q psy12594 236 IAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIM 314 (542)
Q Consensus 236 l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~ 314 (542)
++.+...........+++| |+.++.+++++++..++|+|.+++.+.++..+.+.+.|+++.|+.++.++++.++..+++
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 9997654555555578999 999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChH
Q psy12594 315 ALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDN 394 (542)
Q Consensus 315 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~ 394 (542)
+|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.+...+++.|+++.|+.++.++ +.+
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~ 392 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFK 392 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHH
Confidence 99999999999999999999999999999985 468999999999999999999999999999999999999987 579
Q ss_pred HHHHHHHHHHHHHh-----------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCC------hhhhhHHHHhcchH
Q psy12594 395 LKSKCKNALNILIP-----------KCENPKELEQMLLGNVSEELLASILCAFAKILPCD------PVARRSFVTSHCLR 457 (542)
Q Consensus 395 v~~~a~~aL~nl~~-----------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~------~~~~~~~~~~g~~~ 457 (542)
+|++|+|+|+|++. +.|.+++|+.+|. +.|++++..++++|.|++..+ ++....|.++||++
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~-~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~ 471 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS-AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLD 471 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHH
Confidence 99999999999963 3578999999999 999999999999999998643 23345788999999
Q ss_pred HhhhcC--CCCcHH-HHHHHHhccCccch
Q psy12594 458 KVQEIE--PTPEIA-PHLKTINACFPNEV 483 (542)
Q Consensus 458 ~l~~l~--~~~~~~-~a~~~l~~~~~~~~ 483 (542)
+|+.++ +|.+++ +|..+|++||+++.
T Consensus 472 ~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 472 KIEALQRHENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp HHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 999999 788888 59999999998554
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2e-42 Score=364.29 Aligned_cols=463 Identities=14% Similarity=0.133 Sum_probs=382.0
Q ss_pred HHHHHHHHHHH---------HHHHHHHHhcCCCC-chH-HHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH
Q psy12594 8 NSIDHYQRARL---------CFVQTMSAFADKPS-TIH-FLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI 76 (542)
Q Consensus 8 ~~~~~~~~~r~---------~~~~~l~~l~~~~~-~~~-~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~ 76 (542)
+.+++|-+.+. .+..++.++...+. ... .+...|++|.|+.++.++++.++..|+.++.+++ .++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa--~~~~~ 323 (810)
T 3now_A 246 DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAAS--SKKDK 323 (810)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHT--TSHHH
T ss_pred HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCcHH
Confidence 35556655433 56777888877543 333 3448899999999999999999999999999999 88899
Q ss_pred HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-hhh-hHhhcC----ChHHHHhhhcCC--CHHHHHHHHHH
Q psy12594 77 RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE-RCA-GLIEDK----DLDSIISSLHDF--DPDTRANAALA 148 (542)
Q Consensus 77 ~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~-~~~~~g----~v~~Lv~lL~~~--~~~~~~~a~~~ 148 (542)
++.+.+.|+ +.|+.+++++++.++..|+.+|++++.... +.. ..++.| .++.|+++|.++ +++++..|+|+
T Consensus 324 R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Avea 402 (810)
T 3now_A 324 AKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG 402 (810)
T ss_dssp HHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred HHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999876 999999999889999999999999975321 222 234444 366788888888 89999999999
Q ss_pred HHHhhcCChHHHHHHH-HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH----------------------------
Q psy12594 149 LGGLAKDNKHFAERIV-QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP---------------------------- 199 (542)
Q Consensus 149 L~~l~~~~~~~~~~i~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~---------------------------- 199 (542)
|.+++.+ +..+..++ +.|++|.|+++++++++.++..|+++|.||+.+.+
T Consensus 403 LayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~ 481 (810)
T 3now_A 403 LAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV 481 (810)
T ss_dssp HHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHH
T ss_pred HHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccH
Confidence 9999984 45566666 56999999999999999999999999999998541
Q ss_pred -HH---HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHH
Q psy12594 200 -EL---AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLL 274 (542)
Q Consensus 200 -~~---~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L 274 (542)
.. .+.+++.|++|.|+.+++++++.+++.|+|+|+||+.+ ++++..+.+.|+++ |+.+|.++++..++.|+|+|
T Consensus 482 ~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL 560 (810)
T 3now_A 482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHH
Confidence 11 26788999999999999999999999999999999976 46999999999999 99999999999999999999
Q ss_pred HHHhcCC-hHHHHH-HHhcCCHHHHHHhhhcCCcc-chHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594 275 RDMCKHN-LRLANL-VVLAGGLDGLLRLIDCNGGY-NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQL 351 (542)
Q Consensus 275 ~~L~~~~-~~~~~~-~~~~~~i~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v 351 (542)
.+|+.+. +..... ....+++++|+.+|.++... .+..|+++|.||+..+++..+.+++.|+++.|+.++.+++ +.+
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-~~V 639 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYL 639 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-TTH
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHH
Confidence 9998653 433210 01136999999999865443 4568999999999998888999999999999999999854 589
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------h-CCCchhhHHh
Q psy12594 352 QVAAAWTLGQIGKHSVDNVTALCE-ENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------K-CENPKELEQM 419 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------~-~~~i~~L~~l 419 (542)
+..|+++|+||+.++ +.+..+.+ .|.++.|+.++.++ +.++|++|+|+|+|+.. . .+.+++|+.+
T Consensus 640 q~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~L 716 (810)
T 3now_A 640 TRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716 (810)
T ss_dssp HHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHH
Confidence 999999999997654 45556665 78999999999986 57999999999999963 1 4678999999
Q ss_pred hcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--C---CCcHH-HHHHHHhccCc
Q psy12594 420 LLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--P---TPEIA-PHLKTINACFP 480 (542)
Q Consensus 420 L~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~---~~~~~-~a~~~l~~~~~ 480 (542)
|. +.++++.+.+++++.|++..+++..+.+++.|++++|..+. + +.++. .|.+.|+.+..
T Consensus 717 L~-s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 717 IA-NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999987777889999999999999997 3 23344 36666655543
No 4
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.4e-42 Score=363.93 Aligned_cols=445 Identities=16% Similarity=0.146 Sum_probs=387.7
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcCC-ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLADK-VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~ 91 (542)
...|..++.+|.+++.+..++..+... |+++.|+.+|.+. ++.++..|+.+|.+++ ..++.+..+.+.|+++.|++
T Consensus 28 ~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls--~~~~~~~~i~~~g~i~~Lv~ 105 (644)
T 2z6h_A 28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--HHREGLLAIFKSGGIPALVK 105 (644)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT--TSHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh--cChhhHHHHHHcCCHHHHHH
Confidence 457889999999999998888888765 8999999999865 8999999999999999 88779999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 92 DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP 170 (542)
Q Consensus 92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 170 (542)
+|+++++.++..++++|.+++...+.... +.+.|+++.|+++|+++++.++..++.+|.+++..+++.+..+.+.|+++
T Consensus 106 lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~ 185 (644)
T 2z6h_A 106 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185 (644)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChH
Confidence 99999999999999999999987666666 88899999999999999999999999999999988899999999999999
Q ss_pred HHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594 171 PLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD 249 (542)
Q Consensus 171 ~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 249 (542)
.|++++++.+ ..++..++.+|.|++. +++.+..+++.|+++.|+.++.+.+.++++.++|+|.+++...+.. ...
T Consensus 186 ~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~ 261 (644)
T 2z6h_A 186 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGM 261 (644)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhh
Confidence 9999999875 6788999999999997 6778999999999999999999999999999999999999875431 222
Q ss_pred hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCC--ccchHHHHHHHhHhhcCCh--
Q psy12594 250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG--GYNSLPAIMALGYMSAQSE-- 324 (542)
Q Consensus 250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~-- 324 (542)
.++++ |+.++.+.+++++..++++|.+|+.+.+...+.+.+.|+++.|+.++.+.+ +.++..|+++|++|+..++
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~ 341 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 341 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH
Confidence 47899 999999999999999999999999988888888899999999999998743 6899999999999987544
Q ss_pred -HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH-----
Q psy12594 325 -QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK----- 398 (542)
Q Consensus 325 -~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~----- 398 (542)
.....+.+.++++.|+.+|.++.+..++..|+|+|+|++.++ +....+++.|+++.|+.++.+++ .++|++
T Consensus 342 ~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~~~~--~~vr~~a~~al 418 (644)
T 2z6h_A 342 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAH--QDTQRRTSMGG 418 (644)
T ss_dssp HHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHH--HHHTTC-----
T ss_pred HHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHhccc--hhhhhHhhhcc
Confidence 234457788999999999998655689999999999997764 45588899999999999999752 345544
Q ss_pred -----------------HHHHHHHH---------HhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHH
Q psy12594 399 -----------------CKNALNIL---------IPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVT 452 (542)
Q Consensus 399 -----------------a~~aL~nl---------~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~ 452 (542)
++.+|+++ +...+.+++|+.+|. +.+++++..++++|.++.. +++.+..+.+
T Consensus 419 ~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~-~~~~~~~i~~ 496 (644)
T 2z6h_A 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEA 496 (644)
T ss_dssp -----CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHHT-SHHHHHHHHH
T ss_pred ccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 44455544 335688999999999 9999999999999999875 4677889999
Q ss_pred hcchHHhhhcC--CCCcHH
Q psy12594 453 SHCLRKVQEIE--PTPEIA 469 (542)
Q Consensus 453 ~g~~~~l~~l~--~~~~~~ 469 (542)
.|+++.|..+. ++.+++
T Consensus 497 ~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 497 EGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp TTCHHHHHHHTTCSCHHHH
T ss_pred cCChhHHHHHHcCCCHHHH
Confidence 99999999998 566664
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.4e-41 Score=355.16 Aligned_cols=454 Identities=15% Similarity=0.113 Sum_probs=390.9
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~ 91 (542)
...|..++..|.+++.++.++..+... |+++.|+.+|.+ +++.++..|+.+|.+++ ..++.+..+.+.|+++.|++
T Consensus 31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls--~~~~~~~~i~~~g~i~~L~~ 108 (529)
T 1jdh_A 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--HHREGLLAIFKSGGIPALVK 108 (529)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--TSHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH--cCchhHHHHHHcCCHHHHHH
Confidence 456889999999999988888777755 899999999975 48999999999999999 88889999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 92 DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP 170 (542)
Q Consensus 92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 170 (542)
+|+++++.++..++++|.+++..++..+. +.+.|+++.|++++.++++.++..++.+|.+++..+++.+..+.+.|+++
T Consensus 109 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~ 188 (529)
T 1jdh_A 109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188 (529)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH
Confidence 99999999999999999999988666666 78899999999999999999999999999999998899999999999999
Q ss_pred HHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594 171 PLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD 249 (542)
Q Consensus 171 ~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 249 (542)
.|++++++++ ...+..++.+|.+++. +++.+..+.+.|+++.|+.++.++++++++.++|+|.+++...+.. ...
T Consensus 189 ~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~ 264 (529)
T 1jdh_A 189 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGM 264 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCC
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHH
Confidence 9999998765 6677788999999998 6778889999999999999999999999999999999999876432 123
Q ss_pred hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCChH-
Q psy12594 250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSEQ- 325 (542)
Q Consensus 250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~- 325 (542)
.++++ |+.++.+.+++++..++++|++|+.++++..+.+.+.|+++.|++++.+. ++.++..|+++|+|++.++++
T Consensus 265 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~ 344 (529)
T 1jdh_A 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344 (529)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH
Confidence 47899 99999999999999999999999998888888899999999999999873 367999999999999886543
Q ss_pred --HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 326 --IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 326 --~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
....+.+.++++.|+.++.++.++.++..++|+|+|++.++ +....+.+.|+++.|+.++.++ ++++|++|+|++
T Consensus 345 ~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l 421 (529)
T 1jdh_A 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRA--HQDTQRRTSMGG 421 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHH--HHHHC-------
T ss_pred HHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh-hhhHHHHHcCCHHHHHHHHHHH--hHHHHHHHhccc
Confidence 45678888999999999998665689999999999997754 4567888999999999999976 468999999988
Q ss_pred HH----------------------H---------HhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHH
Q psy12594 404 NI----------------------L---------IPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVT 452 (542)
Q Consensus 404 ~n----------------------l---------~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~ 452 (542)
.| + +.+.+.++.|+.++. +.+++++..+.++|.++.. ++..++.+.+
T Consensus 422 ~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~-~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~ 499 (529)
T 1jdh_A 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEA 499 (529)
T ss_dssp ----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred CchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHc-CCchHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 87 1 234678999999999 9999999999999999874 5777889999
Q ss_pred hcchHHhhhcC--CCCcHH-HHHHHHhcc
Q psy12594 453 SHCLRKVQEIE--PTPEIA-PHLKTINAC 478 (542)
Q Consensus 453 ~g~~~~l~~l~--~~~~~~-~a~~~l~~~ 478 (542)
.|+++.|..++ ++++++ .|..+|.++
T Consensus 500 ~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 500 EGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 99999999998 677777 477777653
No 6
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.5e-41 Score=351.58 Aligned_cols=399 Identities=17% Similarity=0.224 Sum_probs=356.4
Q ss_pred cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh-h-hhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHH
Q psy12594 83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE-R-CAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHF 159 (542)
Q Consensus 83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~-~-~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~ 159 (542)
...++.++..|.++++.++..|++.|++++.... . ...++..|+++.|+++|.+++ +.++..|+|+|.+++..++..
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3468999999999999999999999999976543 3 344889999999999999887 999999999999999988999
Q ss_pred HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh-cCCCHHHHHHHHHHHHHHhc
Q psy12594 160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL-NNDEVNVKADAFLCLADIAK 238 (542)
Q Consensus 160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~ 238 (542)
+..+++.|+++.|+.+|.++++.++..|+|+|+||+.+++..+..+.+.|+++.|+.++ .+.++.++..++|+|++|+.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998898999999999999999999 56789999999999999998
Q ss_pred CChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHh
Q psy12594 239 DSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG 317 (542)
Q Consensus 239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~ 317 (542)
..+. .......++++ |+.++.++++.++..++++|.+++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus 233 ~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 233 GKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 8643 23334578999 999999999999999999999999888888888889999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHH
Q psy12594 318 YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKS 397 (542)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~ 397 (542)
+++.+++...+.+++.++++.|+.++.++.++.++..|+|+|+|++.++++....+++.|+++.|+.+|.++ ++++|.
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~ 389 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKK 389 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHH
Confidence 999999999999999999999999999863569999999999999998999999999999999999999987 579999
Q ss_pred HHHHHHHHHHhh-----------CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh-----------hhhHHHHhcc
Q psy12594 398 KCKNALNILIPK-----------CENPKELEQMLLGNVSEELLASILCAFAKILPCDPV-----------ARRSFVTSHC 455 (542)
Q Consensus 398 ~a~~aL~nl~~~-----------~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~-----------~~~~~~~~g~ 455 (542)
.|+|+|+|+... .+.+++|+.+|. +.+++++..++++|.+++..++. ....+.+.||
T Consensus 390 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 390 EAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI-CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence 999999999754 478999999999 99999999999999999876644 4567889999
Q ss_pred hHHhhhcC--CCCcHH-HHHHHHhccCccchhc
Q psy12594 456 LRKVQEIE--PTPEIA-PHLKTINACFPNEVIH 485 (542)
Q Consensus 456 ~~~l~~l~--~~~~~~-~a~~~l~~~~~~~~~~ 485 (542)
++++..++ ++.+++ .|..+|++||+.+...
T Consensus 469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~ 501 (528)
T 4b8j_A 469 LEKIENLQSHDNNEIYEKAVKILEAYWMDEEDD 501 (528)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence 99999998 677777 5899999999865444
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.1e-41 Score=349.94 Aligned_cols=398 Identities=16% Similarity=0.223 Sum_probs=355.7
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
.++.+++.+.|+|+..|..|+..++++.+.+..+..+.+++.|++|.|+++|++ +++.++..|+++|+|++.++++...
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 488999999999999999999999999865555667888999999999999975 5699999999999999999988888
Q ss_pred -HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-----HhHHHHHHHHHHHH
Q psy12594 121 -LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-----LSLKHAAAFALDGI 194 (542)
Q Consensus 121 -~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~nl 194 (542)
+++.|++|.|+.+|+++++++++.|+|+|++++.+++.++..+.+.|+++.|+.++..++ ..+++.++|+|.|+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 45788999999999
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHH
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATL 273 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~ 273 (542)
+.+...........+++|.|+.++.+.+++++..++|+|++|+....+....+...|+++ |+.+|.+++..++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 986543333333367889999999999999999999999999998877778888999999 9999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH
Q psy12594 274 LRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV 353 (542)
Q Consensus 274 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 353 (542)
|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.+++ ..++.
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHH
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999864 69999
Q ss_pred HHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------------hCCCchhh
Q psy12594 354 AAAWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------------KCENPKEL 416 (542)
Q Consensus 354 ~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------------~~~~i~~L 416 (542)
.|+|+|+|++.+ ++++...+++.|+++.|+++|.++ +.+++..+.++|.|+++ .++.++.|
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 454 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHH
Confidence 999999999864 678888999999999999999987 56999999999999853 35667777
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594 417 EQMLLGNVSEELLASILCAFAKILPCD 443 (542)
Q Consensus 417 ~~lL~~~~~~~v~~~~l~~l~~ll~~~ 443 (542)
..|.. +.+.++.+.+...|.+.+..+
T Consensus 455 e~Lq~-~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 455 EALQR-HENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp HHGGG-CSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHc-CCCHHHHHHHHHHHHHHCCCc
Confidence 77777 778888888888888776543
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.5e-40 Score=345.68 Aligned_cols=398 Identities=16% Similarity=0.216 Sum_probs=357.3
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
..++.++..+.|+|+..+..|+..++++.+.+..+..+.+++.|++|.|+++|.. +++.++..|+++|++++.++++..
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3588899999999999999999999999855555667888999999999999975 669999999999999999998887
Q ss_pred h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC-----HhHHHHHHHHHHH
Q psy12594 120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-----LSLKHAAAFALDG 193 (542)
Q Consensus 120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~n 193 (542)
. +++.|++|.|+.+|.++++.+++.|+|+|++++.+++.++..+++.|+++.|+.++..++ ..+.+.++|+|.|
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 7 999999999999999999999999999999999999999999999999999999998764 4578899999999
Q ss_pred HhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHH
Q psy12594 194 IVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAAT 272 (542)
Q Consensus 194 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~ 272 (542)
++.+...........+++|.|+.++.+.+++++..++|+|++++....+....+...|+++ |+.+|.++++.++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 9986544433333467889999999999999999999999999999887888888999999 999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHH
Q psy12594 273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352 (542)
Q Consensus 273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~ 352 (542)
+|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|+|++.+++.....+++.|+++.|+.++.++. ..++
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~ 394 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQ 394 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHH
Confidence 999999999988888999999999999999999999999999999999999999999999999999999999864 5899
Q ss_pred HHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------------hCCCchh
Q psy12594 353 VAAAWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------------KCENPKE 415 (542)
Q Consensus 353 ~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------------~~~~i~~ 415 (542)
..|+|+|+|++.+ ++++...+++.|+++.|+++|.++ +.+++..+.++|.|+++ .+|.+..
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 9999999999864 678888999999999999999987 56999999999999853 3577888
Q ss_pred hHHhhcCCCCHHHHHHHHHHHHhhCCC
Q psy12594 416 LEQMLLGNVSEELLASILCAFAKILPC 442 (542)
Q Consensus 416 L~~lL~~~~~~~v~~~~l~~l~~ll~~ 442 (542)
|..|.. +.+.++.+.+...|.+.+..
T Consensus 473 ie~Lq~-~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 473 IEALQR-HENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HTGGGG-CSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHCCC
Confidence 888877 88888999888888877654
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9e-42 Score=359.36 Aligned_cols=419 Identities=15% Similarity=0.082 Sum_probs=354.1
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcC----cHHHHHH
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERN----LVALVLK 91 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~----~l~~Lv~ 91 (542)
.+..++.++.+++.++.+|..+.+.|+ |.|+.+++++++.+|..|+.+|+++.+....+......+.| .++.+++
T Consensus 306 ~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~ 384 (810)
T 3now_A 306 QQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR 384 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHH
Confidence 466889999999999999999999876 99999999999999999999999998322111111112233 3566777
Q ss_pred hhccC--CHHHHHHHHHHHHHHhcCChhhhhH-hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-----------
Q psy12594 92 DLTKQ--NKHYKKTALHMLTCVAQQDERCAGL-IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK----------- 157 (542)
Q Consensus 92 ~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----------- 157 (542)
+|.++ +++++..|++.|.+++...+....+ .+.|++|.|+.+|+++++.++..++++|.|++.+.+
T Consensus 385 lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~l 464 (810)
T 3now_A 385 FLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIEL 464 (810)
T ss_dssp HHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGG
T ss_pred HhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHH
Confidence 88877 8899999999999999776555554 467999999999999999999999999999997542
Q ss_pred ------------------HHH---HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHH
Q psy12594 158 ------------------HFA---ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIK 216 (542)
Q Consensus 158 ------------------~~~---~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ 216 (542)
..+ +.+++.|++|.|+++++++++.+++.|+|+|.||+. +++.+..+++.|++|.|+.
T Consensus 465 a~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~ 543 (810)
T 3now_A 465 AKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLR 543 (810)
T ss_dssp TTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHH
T ss_pred HHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHH
Confidence 223 788999999999999999999999999999999997 6789999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCC-hhhHH-HHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q psy12594 217 ALNNDEVNVKADAFLCLADIAKDS-PSLAS-TIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAG 292 (542)
Q Consensus 217 ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~-~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 292 (542)
++.++++..++.|+|+|++|+... +.... .....++++ |+.+|.++ +...+..|+++|.||+.++++..+.+++.|
T Consensus 544 LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG 623 (810)
T 3now_A 544 MALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623 (810)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 999999999999999999998753 22111 001236888 99999866 445567899999999999888888899999
Q ss_pred CHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh-hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHH
Q psy12594 293 GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE-LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT 371 (542)
Q Consensus 293 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 371 (542)
+++.|+.++.++++.++.+|+++|+|++.+++... .+.+ .+.++.|+.++.++ +..++.+|+|+|+|++.+++...+
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~-~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~ 701 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK-MFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCE 701 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH-HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH-HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999998765444 4444 78999999999985 569999999999999988889999
Q ss_pred HHHH-cCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh----------hCCCchhhHHhhcCCC---CHHHHHHHHHHHH
Q psy12594 372 ALCE-ENVLSTLLSKITQTCVSDNLKSKCKNALNILIP----------KCENPKELEQMLLGNV---SEELLASILCAFA 437 (542)
Q Consensus 372 ~l~~-~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~----------~~~~i~~L~~lL~~~~---~~~v~~~~l~~l~ 437 (542)
.+++ .|+++.|+.++.++ ++++|+.|+|+|.|+.. .+|.+++|+.+++ .+ ++++...++.+|.
T Consensus 702 ~ii~~~g~I~~Lv~LL~s~--d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~-~~d~~~~~i~e~Al~aL~ 778 (810)
T 3now_A 702 KILAIASWLDILHTLIANP--SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ-LPDDTRAKAREVATQCLA 778 (810)
T ss_dssp HHHTSTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC-CTTSTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHCCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh-CcccCcHHHHHHHHHHHH
Confidence 9998 89999999999987 57999999999999953 3678999999997 44 6799999999998
Q ss_pred hhCC
Q psy12594 438 KILP 441 (542)
Q Consensus 438 ~ll~ 441 (542)
+++.
T Consensus 779 ~ll~ 782 (810)
T 3now_A 779 AAER 782 (810)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=9.1e-40 Score=340.78 Aligned_cols=399 Identities=15% Similarity=0.187 Sum_probs=356.4
Q ss_pred hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC--ChhhhhHhhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCChH
Q psy12594 82 ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNKH 158 (542)
Q Consensus 82 ~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~ 158 (542)
..+.++.++..|.++++.++..|+..|.++... .+....+++.|+++.|+++|.++ ++.++..|+++|.+++..++.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 356899999999999999999999999999754 33344488899999999999997 899999999999999998888
Q ss_pred HHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594 159 FAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238 (542)
Q Consensus 159 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 238 (542)
.+..+++.|+++.|+++|+++++.+++.|+|+|++|+.++++.+..+...|+++.|+.++.+.+++++..++|+|++|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred CChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHh
Q psy12594 239 DSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG 317 (542)
Q Consensus 239 ~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~ 317 (542)
............++++ |+.++.++++.++..++++|.+|+...+...+.+.+.++++.|+.++.++++.++..|+++|+
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 7522334445578999 999999999999999999999999988888887888999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHH
Q psy12594 318 YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKS 397 (542)
Q Consensus 318 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~ 397 (542)
+++.+++...+.+++.++++.|+.++.++ +..++..|+|+|++++.++++..+.+++.++++.|+.+|.++ ++++|.
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~ 401 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKK 401 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHH
Confidence 99999998888899999999999999986 569999999999999988999899999999999999999876 579999
Q ss_pred HHHHHHHHHHhh-------------CCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh-----------hhhHHHHh
Q psy12594 398 KCKNALNILIPK-------------CENPKELEQMLLGNVSEELLASILCAFAKILPCDPV-----------ARRSFVTS 453 (542)
Q Consensus 398 ~a~~aL~nl~~~-------------~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~-----------~~~~~~~~ 453 (542)
.|+|+|+|++.. .+.++.|+.+|. +.+++++..++++|.+++...+. ....|.+.
T Consensus 402 ~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (530)
T 1wa5_B 402 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA 480 (530)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc
Confidence 999999999653 357899999999 88999999999999999876543 34568899
Q ss_pred cchHHhhhcC--CCCcHH-HHHHHHhccCccchh
Q psy12594 454 HCLRKVQEIE--PTPEIA-PHLKTINACFPNEVI 484 (542)
Q Consensus 454 g~~~~l~~l~--~~~~~~-~a~~~l~~~~~~~~~ 484 (542)
||++.|..++ ++..++ +|..+|++||+.+..
T Consensus 481 g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 481 GGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp THHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 9999999998 677776 599999999976543
No 11
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.6e-39 Score=351.36 Aligned_cols=458 Identities=15% Similarity=0.128 Sum_probs=393.6
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHhC-CchHHHHhhhcCC-ChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFLKDL-NVVDLIVPLLADK-VPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~-g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~ 91 (542)
...|..++.+|.+++.+..++..+.+. |+++.|+.+|+++ ++.++..|+.+|.+|+ ..++.+..+.+.|+++.|+.
T Consensus 164 ~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls--~~~~~~~~i~~~g~I~~Lv~ 241 (780)
T 2z6g_A 164 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS--HHREGLLAIFKSGGIPALVN 241 (780)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHh--CCchhHHHHHHcCCHHHHHH
Confidence 346888999999999988888877754 8999999999754 8999999999999999 88777889999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 92 DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP 170 (542)
Q Consensus 92 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 170 (542)
+|+++++.++..|+++|.+++...+..+. +.+.|+++.|+.+|.+.+..++..++.+|.+++..+++.+..+.+.|+++
T Consensus 242 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~ 321 (780)
T 2z6g_A 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 321 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 99999999999999999999988767777 77899999999999999999999999999999988889999999999999
Q ss_pred HHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q psy12594 171 PLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD 249 (542)
Q Consensus 171 ~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 249 (542)
.|++++++.+ ...+..++.+|.+|+. .++.+..+++.|+++.|+.++.+.+.++++.++|+|.+|+...... ...
T Consensus 322 ~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~ 397 (780)
T 2z6g_A 322 ALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGM 397 (780)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhh
Confidence 9999999876 5567788999999997 6678888999999999999999999999999999999999876431 123
Q ss_pred hchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC-Cc-cchHHHHHHHhHhhcCChH-
Q psy12594 250 GATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN-GG-YNSLPAIMALGYMSAQSEQ- 325 (542)
Q Consensus 250 ~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~-~~~~~a~~~L~~l~~~~~~- 325 (542)
.++++ |+.+|.+.++.++..++++|.+|+.+.+...+.+.+.++++.|+.+|.+. +. .++..|+++|++|+..+++
T Consensus 398 ~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~ 477 (780)
T 2z6g_A 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477 (780)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH
Confidence 57899 99999999999999999999999999888888888999999999999874 33 7999999999999875544
Q ss_pred --HHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC------------
Q psy12594 326 --IAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV------------ 391 (542)
Q Consensus 326 --~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------------ 391 (542)
....+...++++.|+.++.++....++..|+|+|+|++.+ ++....+.+.|+++.|+.+|.++++
T Consensus 478 ~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n 556 (780)
T 2z6g_A 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 556 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcccc
Confidence 2456778899999999999876568999999999999875 4556788899999999999987521
Q ss_pred --------ChHHHHHHHHHHHHH---------HhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhc
Q psy12594 392 --------SDNLKSKCKNALNIL---------IPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSH 454 (542)
Q Consensus 392 --------~~~v~~~a~~aL~nl---------~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g 454 (542)
.++++..++.+|+++ +...+.+++|+.+|. +.+++++..++.+|.++.. ++..+..|.+.|
T Consensus 557 q~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g 634 (780)
T 2z6g_A 557 QQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG 634 (780)
T ss_dssp -CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG-CSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTT
T ss_pred chhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCC
Confidence 134555666666665 335788999999999 9999999999999999864 577788999999
Q ss_pred chHHhhhcC--CCCcHHH-HHHHHhccCc
Q psy12594 455 CLRKVQEIE--PTPEIAP-HLKTINACFP 480 (542)
Q Consensus 455 ~~~~l~~l~--~~~~~~~-a~~~l~~~~~ 480 (542)
+++.|..+. ++..+++ |..+|.++..
T Consensus 635 ~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 635 ATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999998 6666763 6666666544
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.9e-39 Score=330.47 Aligned_cols=417 Identities=19% Similarity=0.218 Sum_probs=358.0
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCChhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
.++.|+..++++++.+|..|+..|+++.+....+....+.+. |+++.|+++|+++ ++.++..++++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 488999999999999999999999998742232223446676 9999999999987 89999999999999999877776
Q ss_pred h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcC
Q psy12594 120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~ 197 (542)
. +++.|+++.|+++|+++++.+|..|+++|++++...+..+..+++.|+++.|++++++ ++..++..++|+|++++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 6 8889999999999999999999999999999999888899999999999999999996 6799999999999999986
Q ss_pred C-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594 198 S-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR 275 (542)
Q Consensus 198 ~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~ 275 (542)
. +.....++ .++++.|+.++.+.++.++..++|+|.+++...++....+...++++ |+.++.++++.++..++++|.
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 5 43333344 78999999999999999999999999999998777777788889999 999999999999999999999
Q ss_pred HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
+++.+.+...+.+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+++.++++.|+.++.++ ++.++..|
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a 338 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEA 338 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHH
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHH
Confidence 99998888877788889999999999999999999999999999998888888899899999999999985 46899999
Q ss_pred HHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHH
Q psy12594 356 AWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILC 434 (542)
Q Consensus 356 ~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~ 434 (542)
+|+|+|++.+ +++..+.+++.|+++.|+.++.++ +.+++..|+++|.+++...+... .+.
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~----~~~------------- 399 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM--DSKIVQVALNGLENILRLGEQEA----KRN------------- 399 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHH----HHS-------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhh----hcc-------------
Confidence 9999999875 678888889999999999999976 57999999999999986531000 000
Q ss_pred HHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHH-HHHHHHhccCccchh
Q psy12594 435 AFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIA-PHLKTINACFPNEVI 484 (542)
Q Consensus 435 ~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~-~a~~~l~~~~~~~~~ 484 (542)
-....+....|.+.||++.|..++ ++..++ .|..+|++||+++..
T Consensus 400 -----~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 447 (450)
T 2jdq_A 400 -----GTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDE 447 (450)
T ss_dssp -----CSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC--
T ss_pred -----ccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 001123456788999999999987 666676 599999999976643
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.9e-38 Score=328.52 Aligned_cols=398 Identities=18% Similarity=0.247 Sum_probs=356.1
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC-HHHHHHHHHHHHHHhcCChhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN-KHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
..+|.|+..|.++++.++..|+..|.++++....+....+.+.|+++.|+++|.+++ +.++..|+++|.+++.++++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999984333466778889999999999999876 9999999999999999887887
Q ss_pred h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcC
Q psy12594 120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~ 197 (542)
. +++.|+++.|+.+|.++++.++..|+|+|++++...+.++..+.+.|+++.|+.++ .+.++.++..++|+|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 7 88999999999999999999999999999999998899999999999999999999 567899999999999999996
Q ss_pred CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
.+...... ..++++.|+.++.+.+++++..++|+|++++...+.....+...++++ |+.+|.++++.++..++++|++
T Consensus 234 ~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 234 KPQPSFEQ-TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSCCCHHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCcHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 54444333 489999999999999999999999999999988876667888889999 9999999999999999999999
Q ss_pred HhcCChHHHHHHHhcCCHHHHHHhhhcC-CccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594 277 MCKHNLRLANLVVLAGGLDGLLRLIDCN-GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
++.+.+...+.+.+.|+++.|+.+|.++ ++.++..|+++|+|++.+++.....+++.++++.|+.++.++ +..++..|
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a 391 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEA 391 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHH
Confidence 9998888888888999999999999998 889999999999999998888888999999999999999985 56999999
Q ss_pred HHHHHHhhcC-ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---------------------CCCc
Q psy12594 356 AWTLGQIGKH-SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK---------------------CENP 413 (542)
Q Consensus 356 ~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~---------------------~~~i 413 (542)
+|+|+|++.+ +++....+.+.|+++.|+.+|.++ +++++..+.++|.+++.. ++.+
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 469 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGL 469 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcH
Confidence 9999999876 688899999999999999999986 579999999999999632 3446
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594 414 KELEQMLLGNVSEELLASILCAFAKILPCD 443 (542)
Q Consensus 414 ~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~ 443 (542)
+.+..+.. +.++++...+...+.++....
T Consensus 470 ~~l~~L~~-~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 470 EKIENLQS-HDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHGGG-CSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHCCCc
Confidence 77777877 788889999999888887653
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.6e-38 Score=327.89 Aligned_cols=402 Identities=15% Similarity=0.200 Sum_probs=357.8
Q ss_pred hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCChh
Q psy12594 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDER 117 (542)
Q Consensus 39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~~ 117 (542)
..+.++.|+..|+++++.++..|+..|.++.+....+....+.+.|+++.|+++|.++ ++.++..|+++|.+++.+.++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3578999999999999999999999999998433344556778999999999999987 899999999999999998877
Q ss_pred hhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 118 CAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 118 ~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
... +++.|+++.|+.+|.++++.++..|+|+|++++..++..+..+...|+++.|+.++.++++.++..++|+|.+|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 777 8899999999999999999999999999999999888999999999999999999999899999999999999998
Q ss_pred CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594 197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR 275 (542)
Q Consensus 197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~ 275 (542)
+...........++++.|+.++.+.++.++..++|+|.+|+...++....+.+.++++ |+.+|.++++.++..++++|.
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 6522333444589999999999999999999999999999998777777888889999 999999999999999999999
Q ss_pred HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
+++.+.+...+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.++++.|+.++.++ +..++..|
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a 403 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEA 403 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHH
Confidence 99998888888888899999999999999999999999999999998888888889999999999999874 46999999
Q ss_pred HHHHHHhhcC-Ch--HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh---------------------CC
Q psy12594 356 AWTLGQIGKH-SV--DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK---------------------CE 411 (542)
Q Consensus 356 ~~~L~~l~~~-~~--~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~---------------------~~ 411 (542)
+|+|++++.+ .+ +..+.+.+.|+++.|+.++.++ +++++..|+++|.+++.. ++
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcC
Confidence 9999999875 44 7888899999999999999976 579999999999999642 23
Q ss_pred CchhhHHhhcCCCCHHHHHHHHHHHHhhCCCCh
Q psy12594 412 NPKELEQMLLGNVSEELLASILCAFAKILPCDP 444 (542)
Q Consensus 412 ~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~ 444 (542)
.++.|..|+. +.++++...+...|.+++...+
T Consensus 482 ~~~~L~~L~~-~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 482 GMEKIFNCQQ-NENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHGGGG-CSCHHHHHHHHHHHHHHSSSCC
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHCCccc
Confidence 4677788888 8888999999999999987653
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=9e-38 Score=326.21 Aligned_cols=434 Identities=13% Similarity=0.094 Sum_probs=368.9
Q ss_pred HHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcC
Q psy12594 37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQ 114 (542)
Q Consensus 37 l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~ 114 (542)
....|++|.|+.+|+++++.+|..|+.+|.+++ .+++.+..+... |.++.+++.|.+ +++.++..++.+|.+++..
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~--~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHH--TSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHH--cCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999999999999 887777666654 899999999986 4899999999999999876
Q ss_pred Chhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594 115 DERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG 193 (542)
Q Consensus 115 ~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 193 (542)
.+ .+. +.+.|+++.|+++|+++++.++..++++|.+++..++..+..+.+.|++|.|+++++++++.++..++.+|.+
T Consensus 91 ~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 91 RE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169 (529)
T ss_dssp HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54 555 8899999999999999999999999999999998777778889899999999999999999999999999999
Q ss_pred HhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594 194 IVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAA 271 (542)
Q Consensus 194 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~ 271 (542)
++..+++.+..+.+.|+++.|+.++++. +...+..++.+|++++... ..+..+.+.++++ |+.++.++++.++..++
T Consensus 170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 9998899999999999999999999865 5567788999999999765 5788888899999 99999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-hhh
Q psy12594 272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-KEQ 350 (542)
Q Consensus 272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~ 350 (542)
|+|.+++...+... ...++++.|+.++.++++.++..++++|++++.++++....+.+.++++.|+.++.+.+ ++.
T Consensus 249 ~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 249 WTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 99999998764321 12478999999999999999999999999999988888999999999999999998633 268
Q ss_pred HHHHHHHHHHHhhcCChH---HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh---------hCCCchhhHH
Q psy12594 351 LQVAAAWTLGQIGKHSVD---NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP---------KCENPKELEQ 418 (542)
Q Consensus 351 v~~~a~~~L~~l~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~---------~~~~i~~L~~ 418 (542)
++..|+++|+|++.++++ .+..+.+.|+++.|+.+|.+++ ++.+++.++|+|+|+.. +.+.++.|+.
T Consensus 326 v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ 404 (529)
T 1jdh_A 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404 (529)
T ss_dssp HHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc-chHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHH
Confidence 999999999999876544 4667889999999999999864 36899999999999963 3567899999
Q ss_pred hhcCCCCHHHHH----------------------HHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHH-HHHH
Q psy12594 419 MLLGNVSEELLA----------------------SILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIA-PHLK 473 (542)
Q Consensus 419 lL~~~~~~~v~~----------------------~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~-~a~~ 473 (542)
+|. +.++++++ .++.++.++.. .+.++..+.+.|+++.+..+. +++.++ .+..
T Consensus 405 ll~-~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~ 482 (529)
T 1jdh_A 405 LLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482 (529)
T ss_dssp HHH-HHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHH-HHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCCchHHHHHHHH
Confidence 987 65555554 45556666654 456777899999999999998 555566 4667
Q ss_pred HHhccCc
Q psy12594 474 TINACFP 480 (542)
Q Consensus 474 ~l~~~~~ 480 (542)
.+.++..
T Consensus 483 ~l~~l~~ 489 (529)
T 1jdh_A 483 VLCELAQ 489 (529)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 7766653
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.6e-38 Score=321.81 Aligned_cols=354 Identities=14% Similarity=0.149 Sum_probs=305.7
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
.++.|+.+|++++++++..|+++|.+++..++..+..+.+.|++|.|+++|+++++.++..|+|+|.||+.++++.+..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999998888888899999999999999999999999999999999999779999999
Q ss_pred hhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc--------C--------CChhHH
Q psy12594 206 SDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT--------Y--------PHGLVQ 267 (542)
Q Consensus 206 ~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~--------~--------~~~~v~ 267 (542)
++.|++|.|+++|. ++++++++.++|+|+||+.+ ++.+..+.+ |+++ |+.+|. + .++.+.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 78999999999999999998 568888888 9999 999993 2 246778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhc------CCccchHHHHHHHhHhhcC------------------
Q psy12594 268 KNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDC------NGGYNSLPAIMALGYMSAQ------------------ 322 (542)
Q Consensus 268 ~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~------------------ 322 (542)
+.++|+|+||+.+ ++..+.+.+. |+++.|+.++++ .+..+...++.+|.|++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 7788878887 999999999986 4567888999999988621
Q ss_pred --------------------------------ChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHH-
Q psy12594 323 --------------------------------SEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDN- 369 (542)
Q Consensus 323 --------------------------------~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~- 369 (542)
.+...+.+++.++++.|+.+|.++.++.+++.|+|+|+|++.++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 11233456677889999999998777899999999999999876432
Q ss_pred --H-HHHH-HcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh--------CCCchhhHHhhcCCCC------HHHHHH
Q psy12594 370 --V-TALC-EENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK--------CENPKELEQMLLGNVS------EELLAS 431 (542)
Q Consensus 370 --~-~~l~-~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~--------~~~i~~L~~lL~~~~~------~~v~~~ 431 (542)
. +.++ +.|++|.|+++|.++ +++++++|+|+|.|+... .+.+++|+++|. ..+ ++++..
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~--~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~-~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLT-SHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTT-SCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCC--CHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhcc-CCCCCCCCcHHHHHH
Confidence 2 3444 689999999999987 579999999999999632 356899999998 553 368899
Q ss_pred HHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--C-CCcHH-HHHHHHhccCccchhc
Q psy12594 432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--P-TPEIA-PHLKTINACFPNEVIH 485 (542)
Q Consensus 432 ~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~-~~~~~-~a~~~l~~~~~~~~~~ 485 (542)
++++|.+++..++...+.+.+.||+++|..++ . ++.++ +|..+|++||.+...+
T Consensus 397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 99999999999988899999999999999998 4 56676 5999999999866554
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.7e-37 Score=316.62 Aligned_cols=365 Identities=13% Similarity=0.124 Sum_probs=311.7
Q ss_pred HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC-C
Q psy12594 38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ-D 115 (542)
Q Consensus 38 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~-~ 115 (542)
...+.+|.|+.+|.+.++.+|..|+.+|.+++ .. ++.+..+.+.|++|.|+++|+++++.++..|+++|.+++.+ +
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La--~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLC--YRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence 35788999999999999999999999999999 74 88999999999999999999999999999999999999986 5
Q ss_pred hhhhh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc----------------
Q psy12594 116 ERCAG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA---------------- 177 (542)
Q Consensus 116 ~~~~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---------------- 177 (542)
++.+. +++.|+++.|+++|.+ .+.++++.++++|++|+. .+.++..+++ +++|.|++++.
T Consensus 123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccc
Confidence 67777 9999999999999997 578999999999999998 6677888886 56999999871
Q ss_pred --CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCC-ChHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCh-------
Q psy12594 178 --SPQLSLKHAAAFALDGIVKHSPELAESASDCD-VIPLLIKALNN------DEVNVKADAFLCLADIAKDSP------- 241 (542)
Q Consensus 178 --~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~-~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~------- 241 (542)
.+++.+++.|+++|.||+.++++.+..+.+.+ +++.|+.++++ .+...++.|+|+|+||+....
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 23579999999999999998888899888754 56799999874 467899999999999996521
Q ss_pred ------------------hhHHHHHhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCCh----HHHHHHHhcCCHHHH
Q psy12594 242 ------------------SLASTIADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHNL----RLANLVVLAGGLDGL 297 (542)
Q Consensus 242 ------------------~~~~~~~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~~----~~~~~~~~~~~i~~L 297 (542)
...+.+.+.++++ |+.+|.. .++.+++.|+++|.||+.+.. .....+.+.++++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 1112333456678 8999965 489999999999999987652 222344567899999
Q ss_pred HHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-------hhhHHHHHHHHHHHhhcCChHHH
Q psy12594 298 LRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-------KEQLQVAAAWTLGQIGKHSVDNV 370 (542)
Q Consensus 298 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v~~~a~~~L~~l~~~~~~~~ 370 (542)
+.+|.+++..++..|+++|+||+.+... . .++..++++.|+.+|.+++ ...++..|+++|+||+.+++++.
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~-~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDARN-K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCSC-H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChhH-H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999987543 3 3557899999999999863 24788899999999999999999
Q ss_pred HHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 371 TALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 371 ~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
+.+.+.|+++.|+.++.++..++.+++.|+|+|+|+..
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999864467999999999999974
No 18
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=321.35 Aligned_cols=436 Identities=14% Similarity=0.140 Sum_probs=373.2
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHh
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKD 92 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~ 92 (542)
...|..++.+|.+++.+++++..+.+.|+++.|+.+|+++++.++..|+.+|.+++ .. +..+..+.+.|+++.|+++
T Consensus 71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~--~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 71 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSTTHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH--hCcchhHHHHHHCCChHHHHHH
Confidence 45688899999999999889999999999999999999999999999999999999 54 5677788899999999999
Q ss_pred hccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 93 LTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALP 170 (542)
Q Consensus 93 L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 170 (542)
|+++++.++..++.+|.+++..+++.+. +.+.|+++.|++++++.+ ..++..++.+|.+++. .+..+..+++.|+++
T Consensus 149 L~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~ 227 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ 227 (644)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHH
T ss_pred HCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHH
Confidence 9999999999999999999987777777 889999999999998776 6788899999999996 667799999999999
Q ss_pred HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy12594 171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG 250 (542)
Q Consensus 171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 250 (542)
.|+.++++++..+++.++|+|.|++.+.+.. ....++++.|+.++.+.++++++.++|+|++|+..++..+..+.+.
T Consensus 228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~ 304 (644)
T 2z6h_A 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304 (644)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999865321 1123678999999999999999999999999999887788889999
Q ss_pred chHH-HHHhhcCC-C-hhHHHHHHHHHHHHhcCChH---HHHHHHhcCCHHHHHHhhhcCC-ccchHHHHHHHhHhhcCC
Q psy12594 251 ATTL-AVEHLTYP-H-GLVQKNAATLLRDMCKHNLR---LANLVVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQS 323 (542)
Q Consensus 251 ~~i~-L~~lL~~~-~-~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~ 323 (542)
++++ |+.++.+. + +.++..++++|++|+...++ ....+.+.++++.|+.+|.+++ +.++..++++|+|++.++
T Consensus 305 g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 9999 99999874 3 79999999999999976442 3344677899999999999876 589999999999999876
Q ss_pred hHHHHHHHhhCchHHHHHhhcCC---------------------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q psy12594 324 EQIAEQIIELQGVGSLQTILQCP---------------------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTL 382 (542)
Q Consensus 324 ~~~~~~~~~~~~l~~L~~ll~~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L 382 (542)
... ..+++.++++.|+.++.+. ..+.++..++.+|.+++ .++..+..+.+.|+++.|
T Consensus 385 ~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~L 462 (644)
T 2z6h_A 385 ANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLF 462 (644)
T ss_dssp GGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHH
T ss_pred HHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHH
Confidence 554 7888999999999998762 23467778888888885 455777888899999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHh---------hCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHh
Q psy12594 383 LSKITQTCVSDNLKSKCKNALNILIP---------KCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTS 453 (542)
Q Consensus 383 ~~ll~~~~~~~~v~~~a~~aL~nl~~---------~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~ 453 (542)
+.++.++ ++++++.|+++|.++.. +++.++.|..++. +.+++++..+.++|.++....+...+...
T Consensus 463 v~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~-- 537 (644)
T 2z6h_A 463 VQLLYSP--IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVLFRMSEDKPQDYKKRL-- 537 (644)
T ss_dssp HHHTTCS--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTTSCHHHHHHH--
T ss_pred HHHHcCC--CHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHc-CCCHHHHHHHHHHHHHHhccCcHhhhccc--
Confidence 9999976 57899999999999853 4688999999999 99999999999999999776643222211
Q ss_pred cchHHhhhcC
Q psy12594 454 HCLRKVQEIE 463 (542)
Q Consensus 454 g~~~~l~~l~ 463 (542)
+++.+..+.
T Consensus 538 -~~~il~~~~ 546 (644)
T 2z6h_A 538 -SVELTSSLF 546 (644)
T ss_dssp -HHHHHHHHS
T ss_pred -chHHHHHHH
Confidence 255555554
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=308.30 Aligned_cols=360 Identities=14% Similarity=0.114 Sum_probs=297.7
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC------------CHHHHHHHHHHH
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ------------NKHYKKTALHML 108 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~------------~~~~~~~a~~~L 108 (542)
..++.|+..+.+.|+. ...+.|..+. ..++.+..+++.|.+|.|+++|... +++++..|+++|
T Consensus 32 ~~~~~l~~~~~~~~~~---~~~~~ll~~~--~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al 106 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKD---DMSRTLLAMS--SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAAL 106 (458)
T ss_dssp -------------CCH---HHHHHHHHHH--SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHH---HHHHHHHHHH--cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHH
Confidence 3467777777777776 3667788888 7788889999999999999999863 279999999999
Q ss_pred HHHhcCChhhhh-HhhcCCh----------HHHHhhhcCCC--HH-----HHH-------HHHHHHHHhhcCChHHHHHH
Q psy12594 109 TCVAQQDERCAG-LIEDKDL----------DSIISSLHDFD--PD-----TRA-------NAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 109 ~~l~~~~~~~~~-~~~~g~v----------~~Lv~lL~~~~--~~-----~~~-------~a~~~L~~l~~~~~~~~~~i 163 (542)
.|++.+.++... ..+.+++ +.+++++.+.. .+ +++ .|+|+|.|++. ++++|+.+
T Consensus 107 ~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i 185 (458)
T 3nmz_A 107 HNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAM 185 (458)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHH
T ss_pred HHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 999988877777 6777777 66777776542 22 444 89999999977 58899999
Q ss_pred HHcCChHHHHHhccC-----------CCHhHHHHHHHHHHHHhcCCHHHHHHhhh-CCChHHHHHhhcCCCHHHHHHHHH
Q psy12594 164 VQCGALPPLVQILAS-----------PQLSLKHAAAFALDGIVKHSPELAESASD-CDVIPLLIKALNNDEVNVKADAFL 231 (542)
Q Consensus 164 ~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~ 231 (542)
++.|+++.|+.+|.. .++.+++.|+|+|.||+.+++..+..+.. .|++|.|+.+|.++++++++.++|
T Consensus 186 ~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 265 (458)
T 3nmz_A 186 NELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIAS 265 (458)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999952 23779999999999999987767766654 455999999999999999999999
Q ss_pred HHHHHhcC-ChhhHHHHHhhchHH-HHHhh-cCCChhHHHHHHHHHHHHhcCChHHHHHHH-hcCCHHHHHHhhhcCCcc
Q psy12594 232 CLADIAKD-SPSLASTIADGATTL-AVEHL-TYPHGLVQKNAATLLRDMCKHNLRLANLVV-LAGGLDGLLRLIDCNGGY 307 (542)
Q Consensus 232 ~L~~l~~~-~~~~~~~~~~~~~i~-L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~ 307 (542)
+|+||+.. ++..+..+.+.|+++ |+.+| .+.++.+++.++.+|+||+.+.++....+. ..|+++.|+.+|.+.++.
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~ 345 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSS
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCc
Confidence 99999985 556888899999999 99975 456899999999999999986655555565 789999999999987654
Q ss_pred ----chHHHHHHHhHhhc---CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 308 ----NSLPAIMALGYMSA---QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLS 380 (542)
Q Consensus 308 ----~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 380 (542)
++..|+++|.||+. .+++..+.+.+.|+++.|+.+|.+++ ..+++.|+|+|+|++.+++++++.+.+.|+++
T Consensus 346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~ 424 (458)
T 3nmz_A 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVS 424 (458)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 89999999999997 78888999999999999999999865 58999999999999888999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 381 TLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 381 ~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
.|+++|.++ ++.+++.|+|+|.||...
T Consensus 425 ~Lv~LL~s~--~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 425 MLKNLIHSK--HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHTTTTCS--SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence 999999876 579999999999999854
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=6.2e-37 Score=311.62 Aligned_cols=360 Identities=12% Similarity=0.124 Sum_probs=308.7
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
.+|.|+.+|+++++.+|..|+.+|.+++ .+ +..+..+.+.|++|.|+++|+++++.++..|+++|.+++.++++.+.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~--~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHT--SSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHH--cCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999999 65 66777899999999999999999999999999999999998778888
Q ss_pred -HhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc--------cCC--------CHh
Q psy12594 121 -LIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL--------ASP--------QLS 182 (542)
Q Consensus 121 -~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll--------~~~--------~~~ 182 (542)
+++.|++|.|+++|. ++++++++.++|+|++++.. +..+..+++ |++|.|++++ +++ ++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 889999999999999 88899999999999999986 677888999 9999999999 332 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhC-CChHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC---------------
Q psy12594 183 LKHAAAFALDGIVKHSPELAESASDC-DVIPLLIKALNN------DEVNVKADAFLCLADIAKDS--------------- 240 (542)
Q Consensus 183 ~~~~a~~~L~nl~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~--------------- 240 (542)
+++.|+|+|.||+.+ ++.+..+.+. |+++.|+.++.+ .+.++++.++++|.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 777999999999996 8899999987 999999999985 45678899999999997310
Q ss_pred -----------------------------------hhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChH
Q psy12594 241 -----------------------------------PSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 241 -----------------------------------~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~ 283 (542)
+...+.+...++++ |+.+|.++ ++.+++.++|+|.|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 11223455677889 99999876 799999999999999976532
Q ss_pred ----HHHHHH-hcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-----hhHHH
Q psy12594 284 ----LANLVV-LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-----EQLQV 353 (542)
Q Consensus 284 ----~~~~~~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~ 353 (542)
..+.++ +.+++|.|+++|.+++..++..|+++|.|++.+. .. ..++..++++.|+++|..+.. +++..
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-~~-~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LL-HRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GG-HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-HH-HHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 213333 6899999999999999999999999999998753 33 345566899999999998532 46888
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
.++++|+|+..+++++.+.+.+.|+++.|++++.++ ++++++++|+|.|.|+..+
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999987 2579999999999998754
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.2e-35 Score=319.07 Aligned_cols=436 Identities=14% Similarity=0.148 Sum_probs=372.7
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHh
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKD 92 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~ 92 (542)
...|..++.+|.+++.+++++..+.+.|+++.|+.+|++.++.++..|+.+|.+|+ .. +..+..+.+.|+++.|+.+
T Consensus 207 ~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa--~~~~~~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 207 VETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL--LHQEGAKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--HHSTTHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh--CCChhhHHHHHHcCCHHHHHHH
Confidence 45788999999999999889999999999999999999999999999999999999 55 6777788889999999999
Q ss_pred hccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 93 LTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALP 170 (542)
Q Consensus 93 L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 170 (542)
|.+.+..++..++.+|.+++..+++.+. +.+.|+++.|+.++++.+ ...+..++.+|.+++. .+..+..+++.|+++
T Consensus 285 L~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~ 363 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQ 363 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHH
Confidence 9999999999999999999987777777 888899999999999876 4566778899999996 566789999999999
Q ss_pred HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh
Q psy12594 171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG 250 (542)
Q Consensus 171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 250 (542)
.|+.++.+.+..+++.++++|.+|+...+.. ....++++.|+.++.+.+++++..++++|++|+...+..+..+.+.
T Consensus 364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~ 440 (780)
T 2z6g_A 364 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440 (780)
T ss_dssp HHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 9999999999999999999999999855321 1124578999999999999999999999999999887788888899
Q ss_pred chHH-HHHhhcCC-C-hhHHHHHHHHHHHHhcCChH---HHHHHHhcCCHHHHHHhhhcCCc-cchHHHHHHHhHhhcCC
Q psy12594 251 ATTL-AVEHLTYP-H-GLVQKNAATLLRDMCKHNLR---LANLVVLAGGLDGLLRLIDCNGG-YNSLPAIMALGYMSAQS 323 (542)
Q Consensus 251 ~~i~-L~~lL~~~-~-~~v~~~a~~~L~~L~~~~~~---~~~~~~~~~~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~ 323 (542)
++++ |+.+|.+. + +.++..++++|++|+...++ ....+...++++.|+.+|.+++. .++..++++|+|++.++
T Consensus 441 g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred CCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 9999 99999874 3 59999999999999876544 23457788999999999999876 89999999999999865
Q ss_pred hHHHHHHHhhCchHHHHHhhcCCC---------------------hhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q psy12594 324 EQIAEQIIELQGVGSLQTILQCPH---------------------KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTL 382 (542)
Q Consensus 324 ~~~~~~~~~~~~l~~L~~ll~~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L 382 (542)
.. ...+.+.++++.|+.++.++. .+.++..++.+|++++ .++..+..+.+.|+++.|
T Consensus 521 ~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~L 598 (780)
T 2z6g_A 521 AN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLF 598 (780)
T ss_dssp HH-HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHH
T ss_pred HH-HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHH
Confidence 44 477888999999999986521 2457778899999996 467777888899999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHH---------hhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHh
Q psy12594 383 LSKITQTCVSDNLKSKCKNALNILI---------PKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTS 453 (542)
Q Consensus 383 ~~ll~~~~~~~~v~~~a~~aL~nl~---------~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~ 453 (542)
+.++.++ +++++..|+.+|+++. .+.+.++.|+.++. +.+++++..++++|.++....+...+. .
T Consensus 599 v~lL~~~--~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~-~~~~~Vr~~A~~aL~~l~~~~~~~~~~---~ 672 (780)
T 2z6g_A 599 VQLLYSP--IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH-SRNEGVATYAAAVLFRMSEDKPQDYKK---R 672 (780)
T ss_dssp HHGGGCS--CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTSCTTHHH---H
T ss_pred HHHHcCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCChHhhhc---c
Confidence 9999987 5799999999999985 34688999999999 999999999999999998866532221 1
Q ss_pred cchHHhhhcC
Q psy12594 454 HCLRKVQEIE 463 (542)
Q Consensus 454 g~~~~l~~l~ 463 (542)
.+++.+..+.
T Consensus 673 l~~~ll~~l~ 682 (780)
T 2z6g_A 673 LSVELTSSLF 682 (780)
T ss_dssp HHHHHHHHC-
T ss_pred ccHHHHHHHH
Confidence 2666667665
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=9.7e-35 Score=296.89 Aligned_cols=388 Identities=15% Similarity=0.149 Sum_probs=336.3
Q ss_pred HHHHHHHHHHHHhcC--CCCchHHHHhC-CchHHHHhhhcCC-ChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHH
Q psy12594 15 RARLCFVQTMSAFAD--KPSTIHFLKDL-NVVDLIVPLLADK-VPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALV 89 (542)
Q Consensus 15 ~~r~~~~~~l~~l~~--~~~~~~~l~~~-g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~L 89 (542)
..|..++..|..+.. .......+.+. |++|.|+.+|+++ ++.+|..|+.+|.+++ .. ++....+.+.|+++.|
T Consensus 35 ~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~~i~~L 112 (450)
T 2jdq_A 35 EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIA--SGNSLQTRIVIQAGAVPIF 112 (450)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH--SSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHh--cCCHHHHHHHHhCCCHHHH
Confidence 457788888888643 22333556666 9999999999988 8999999999999999 65 6677778889999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCC-hHHHHHHHHc
Q psy12594 90 LKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDN-KHFAERIVQC 166 (542)
Q Consensus 90 v~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~ 166 (542)
+++|+++++.++..|+++|++++...+..+. +.+.|+++.|+.++.+ .++.++..++++|++++... +.....++ .
T Consensus 113 ~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~ 191 (450)
T 2jdq_A 113 IELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-S 191 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-G
T ss_pred HHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-H
Confidence 9999999999999999999999998877777 8889999999999996 68999999999999999654 33222233 6
Q ss_pred CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q psy12594 167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246 (542)
Q Consensus 167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 246 (542)
++++.|+++++++++.++..++|+|.+++.+.++....+.+.++++.|+.++.+++++++..++++|++++...+.....
T Consensus 192 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 271 (450)
T 2jdq_A 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271 (450)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHH
Confidence 88999999999999999999999999999987888888888999999999999999999999999999999988777777
Q ss_pred HHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC-Ch
Q psy12594 247 IADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ-SE 324 (542)
Q Consensus 247 ~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~ 324 (542)
+.+.++++ |+.++.++++.++..++++|.+++.+.+...+.+.+.++++.|+.++.++++.++..|+++|++++.+ ++
T Consensus 272 ~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 351 (450)
T 2jdq_A 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA 351 (450)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence 88889999 99999999999999999999999988888887788889999999999999999999999999999975 67
Q ss_pred HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH-----------HHHHHHHcCChHHHHHHHhcCCCCh
Q psy12594 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD-----------NVTALCEENVLSTLLSKITQTCVSD 393 (542)
Q Consensus 325 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~l~~~~~l~~L~~ll~~~~~~~ 393 (542)
+..+.+++.++++.|+.++... +..++..++++|.+++...+. ....+.+.|+++.|..++.++ +.
T Consensus 352 ~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~ 428 (450)
T 2jdq_A 352 EQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE--NQ 428 (450)
T ss_dssp HHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH--HH
T ss_pred HHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC--CH
Confidence 7777888899999999999985 568999999999999764432 245566778888888887766 45
Q ss_pred HHHHHHHHHHHHHHh
Q psy12594 394 NLKSKCKNALNILIP 408 (542)
Q Consensus 394 ~v~~~a~~aL~nl~~ 408 (542)
++++.|..+|.++..
T Consensus 429 ~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 429 EIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
Confidence 888888888888763
No 23
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=5.5e-36 Score=305.53 Aligned_cols=375 Identities=17% Similarity=0.168 Sum_probs=308.5
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CH
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH-SP 199 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~ 199 (542)
-...+.++.|+++|.++++.++..|+++|.+++..++..+..+.+.|+||.|+++|+++++.+++.|+|+|.||+.+ ++
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 34568999999999999999999999999999998999999999999999999999999999999999999999985 68
Q ss_pred HHHHHhhhCCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-----------------
Q psy12594 200 ELAESASDCDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT----------------- 260 (542)
Q Consensus 200 ~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~----------------- 260 (542)
+++..+++.|+|+.|+.+|.+ .+.++++.++++|++|+.+. +.+..+.. ++++ |+.++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 999999999999999999996 58899999999999999864 57777775 5688 998771
Q ss_pred -CCChhHHHHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhc------CCccchHHHHHHHhHhhcCCh--------
Q psy12594 261 -YPHGLVQKNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDC------NGGYNSLPAIMALGYMSAQSE-------- 324 (542)
Q Consensus 261 -~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~~~-------- 324 (542)
..++.++++++++|+||+...++..+.+++. |+++.|+.++++ .+...+.+|+++|.||+....
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 2268999999999999999888877777775 556799999985 355688999999999986521
Q ss_pred -----------------HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChH---H-HHHHHHcCChHHHH
Q psy12594 325 -----------------QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVD---N-VTALCEENVLSTLL 383 (542)
Q Consensus 325 -----------------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~---~-~~~l~~~~~l~~L~ 383 (542)
.....+++.++++.|+.++..+..+.+++.|+++|.||+.+... . ...+.+.++++.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 11223345567788999997655679999999999999987622 2 23444578999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhh--------CCCchhhHHhhcCCC--------CHHHHHHHHHHHHhhCCCChhhh
Q psy12594 384 SKITQTCVSDNLKSKCKNALNILIPK--------CENPKELEQMLLGNV--------SEELLASILCAFAKILPCDPVAR 447 (542)
Q Consensus 384 ~ll~~~~~~~~v~~~a~~aL~nl~~~--------~~~i~~L~~lL~~~~--------~~~v~~~~l~~l~~ll~~~~~~~ 447 (542)
.+|.++ ++.+++.|+|+|+||... .+.++.|+++|. .. ..+++..++++|.|++..++.++
T Consensus 362 ~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~-~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 362 DLLTNE--HERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLP-GGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp HGGGCS--CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCC--CHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc-CCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 999987 579999999999999643 245899999998 54 35789999999999999999999
Q ss_pred hHHHHhcchHHhhhcC-C---CCcHH-HHHHHHhccCccchhcccCccchHHHHHHHhhcC
Q psy12594 448 RSFVTSHCLRKVQEIE-P---TPEIA-PHLKTINACFPNEVIHFVSPHYLEDLINRLDQFN 503 (542)
Q Consensus 448 ~~~~~~g~~~~l~~l~-~---~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 503 (542)
+.+.+.|++++|..+. . ...++ .|..+|.++|.+...+ ..|.++-+++-+++.
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr---~~~kk~G~~~~~f~~ 496 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR---KPLEKEGWKKSDFQV 496 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHH---HHHHTTTCCGGGGCC
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHH---HHHHHcCCCHHHhcc
Confidence 9999999999999997 3 22344 4888998888755544 234445555666653
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=296.95 Aligned_cols=347 Identities=15% Similarity=0.161 Sum_probs=294.3
Q ss_pred HHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCC------------hHHHHHHHHHHHHhHccCChHHHHHHHhcCcH
Q psy12594 19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKV------------PSIQHAALATLGKLMCAKHVDIRQEVLERNLV 86 (542)
Q Consensus 19 ~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~------------~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l 86 (542)
...+.|..++.++..|..+++.|++|.|+.+|+..+ ++++..|+.+|.+|++.. ++......+.+.+
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~ 126 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVL 126 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHH
Confidence 467889999999999999999999999999998643 699999999999999544 3333443444444
Q ss_pred ----------HHHHHhhccCC--HH-----HHH-------HHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcC-----
Q psy12594 87 ----------ALVLKDLTKQN--KH-----YKK-------TALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHD----- 136 (542)
Q Consensus 87 ----------~~Lv~~L~~~~--~~-----~~~-------~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~----- 136 (542)
+.+++++.+.+ .+ ++. .|+++|.+++.+ ++.+. +++.|+++.|+.+|..
T Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~ 205 (458)
T 3nmz_A 127 HLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMY 205 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhccc
Confidence 55666666532 11 333 899999999765 67777 9999999999999952
Q ss_pred ------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CHHHHHHhhhC
Q psy12594 137 ------FDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELAESASDC 208 (542)
Q Consensus 137 ------~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~~~~~~~ 208 (542)
.++.++..|+|+|.|++..++..+..+... |++|.|+++|+++++++++.|+|+|.||+.. +++.+..+.+.
T Consensus 206 ~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~ 285 (458)
T 3nmz_A 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 285 (458)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT
T ss_pred ccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc
Confidence 237789999999999999887777777654 6699999999999999999999999999985 67888999999
Q ss_pred CChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hhchHH-HHHhhcCCCh----hHHHHHHHHHHHHhc--
Q psy12594 209 DVIPLLIKAL-NNDEVNVKADAFLCLADIAKDSPSLASTIA-DGATTL-AVEHLTYPHG----LVQKNAATLLRDMCK-- 279 (542)
Q Consensus 209 ~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~-L~~lL~~~~~----~v~~~a~~~L~~L~~-- 279 (542)
|+++.|+++| .+.++++++.++.+|+||+.+..+.+..+. ..|+++ |+.+|.+.++ +++..++|+|+||+.
T Consensus 286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 9999999975 556899999999999999985555666666 789999 9999998754 499999999999997
Q ss_pred -CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHH
Q psy12594 280 -HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358 (542)
Q Consensus 280 -~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 358 (542)
..++..+.+.+.|+++.|+.+|++++..++..|+++|+|++.++++....+++.|+++.|+.++.++ +..+++.|+++
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~A 444 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAA 444 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHH
Confidence 6788888899999999999999999999999999999999988899999999999999999999885 46899999999
Q ss_pred HHHhhcCChH
Q psy12594 359 LGQIGKHSVD 368 (542)
Q Consensus 359 L~~l~~~~~~ 368 (542)
|.||+.++|.
T Consensus 445 L~nL~~~~p~ 454 (458)
T 3nmz_A 445 LRNLMANRPA 454 (458)
T ss_dssp HHHHHTCCSC
T ss_pred HHHHHcCCHh
Confidence 9999988764
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.98 E-value=2.5e-30 Score=251.11 Aligned_cols=267 Identities=15% Similarity=0.124 Sum_probs=235.4
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC-----------CCHhHHHHHHHHHHHHhcCCHHHHHHhhh
Q psy12594 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS-----------PQLSLKHAAAFALDGIVKHSPELAESASD 207 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-----------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~ 207 (542)
......|+|+|.+++.+ +++|+.+++.|+++.|+.+|.. .++.+++.|+|+|.||+.++++.+..+..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556899999999985 7899999999999999999952 23789999999999999987777777754
Q ss_pred C-CChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhhchHH-HHHhh-cCCChhHHHHHHHHHHHHhcCChH
Q psy12594 208 C-DVIPLLIKALNNDEVNVKADAFLCLADIAKD-SPSLASTIADGATTL-AVEHL-TYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 208 ~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~-L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
. |++|.|+.+|.++++++++.++|+|.||+.. +++.+..+.+.|+++ |+.+| .+.++.+++.++++|++|+.+.++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 4 5599999999999999999999999999985 556888899999999 99975 566899999999999999987766
Q ss_pred HHHHHH-hcCCHHHHHHhhhcCCcc----chHHHHHHHhHhhc---CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594 284 LANLVV-LAGGLDGLLRLIDCNGGY----NSLPAIMALGYMSA---QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 284 ~~~~~~-~~~~i~~Lv~lL~~~~~~----~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
....+. ..|+++.|+.+|.++++. ++..|+++|.|++. .+++..+.+.+.|+++.|+.+|.+++ ..+++.|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A 283 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNA 283 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC-hHHHHHH
Confidence 655566 789999999999987653 88999999999997 68888999999999999999999865 5899999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 356 AWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 356 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
+|+|+|++.+++++++.+.+.|+++.|++++.++ ++.+|+.|+|+|.||...
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence 9999999888999999999999999999999987 579999999999999854
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.6e-30 Score=250.03 Aligned_cols=270 Identities=15% Similarity=0.102 Sum_probs=242.1
Q ss_pred hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcCChhhhh-Hh
Q psy12594 55 PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-----------QNKHYKKTALHMLTCVAQQDERCAG-LI 122 (542)
Q Consensus 55 ~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~-~~ 122 (542)
...+..|+.+|.+++ .+++++..+.+.|+++.|+.+|.. .++.++..|+++|.+++..++..+. +.
T Consensus 46 ~~~~~~A~~aL~nls--~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLS--FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345558999999999 899999999999999999999952 2478999999999999988877777 54
Q ss_pred h-cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 123 E-DKDLDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 123 ~-~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
. .|++|.|+++|.++++++++.|+++|.+++.. ++.++..+.+.|++|.|+++| ++.++++++.|+++|.||+.+.+
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 4 46699999999999999999999999999974 678899999999999999974 66788999999999999999777
Q ss_pred HHHHHhh-hCCChHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhhHHHHHhhchHH-HHHhhcCCChhHHHHH
Q psy12594 200 ELAESAS-DCDVIPLLIKALNNDEV----NVKADAFLCLADIAK---DSPSLASTIADGATTL-AVEHLTYPHGLVQKNA 270 (542)
Q Consensus 200 ~~~~~~~-~~~~i~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a 270 (542)
+.+..+. ..|+++.|+.++.+.++ ++++.++|+|+||+. ..++.+..+.+.|+++ |+.+|.+++..+++.|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 7777777 79999999999987654 599999999999997 5667888999999999 9999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHH
Q psy12594 271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQI 326 (542)
Q Consensus 271 ~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 326 (542)
+++|+||+..+++..+.+.+.|+++.|+.+++++++.++..|+++|.||+.+.+..
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999888888888999999999999999999999999999999999887664
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=2.4e-27 Score=222.18 Aligned_cols=242 Identities=25% Similarity=0.317 Sum_probs=228.9
Q ss_pred CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES 204 (542)
Q Consensus 125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 204 (542)
|.++.|+++|++++++++..|+++|.+++...+..+..+.+.|+++.|+++++++++.++..++++|.+++.++++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999988888999999999999999999999999999999999999987999999
Q ss_pred hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594 205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
+.+.|+++.|+.++.+++++++..++++|++++...++.+..+.+.++++ |+.++.++++.++..++++|++++.+.+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999987778888999999999 99999999999999999999999998888
Q ss_pred HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594 284 LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG 363 (542)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 363 (542)
..+.+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|+|++
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999998899999999999999999999985 4699999999999998
Q ss_pred cCCh
Q psy12594 364 KHSV 367 (542)
Q Consensus 364 ~~~~ 367 (542)
...+
T Consensus 241 ~~~~ 244 (252)
T 4hxt_A 241 SGGW 244 (252)
T ss_dssp HTCB
T ss_pred cCCC
Confidence 6654
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=3.4e-27 Score=221.08 Aligned_cols=241 Identities=24% Similarity=0.283 Sum_probs=228.1
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 162 (542)
+.++.|+++|.++++.++..++++|.+++...++... +++.|+++.|+++|+++++.++..++++|.+++..++..+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5789999999999999999999999999988876666 899999999999999999999999999999999988999999
Q ss_pred HHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q psy12594 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 163 i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 242 (542)
+.+.|+++.|+.+++++++.++..|+++|.+++..+++.+..+.+.|+++.|++++.+++++++..++++|++++...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999987899999999999999999999999999999999999999998877
Q ss_pred hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
....+.+.++++ |+.++.++++.++..++++|.+++.+.+...+.+.+.|+++.|+.++.++++.++..|+++|+|++.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 778888899999 9999999999999999999999999888888889999999999999999999999999999999987
Q ss_pred CCh
Q psy12594 322 QSE 324 (542)
Q Consensus 322 ~~~ 324 (542)
..+
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 644
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=6.6e-27 Score=219.24 Aligned_cols=239 Identities=21% Similarity=0.310 Sum_probs=222.8
Q ss_pred CChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAES 204 (542)
Q Consensus 125 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 204 (542)
...+.++.+|++++++++..|+++|.++....+..++.+++.|+++.|+++++++++.++..|+++|++++.++++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56899999999999999999999998877657778889999999999999999999999999999999999988999999
Q ss_pred hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594 205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
+++.|+++.|+.++.+++++++..++|+|++++...+.....+.+.++++ |+.+|.++++.++..++++|.+++.+.+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999998864447888899999 99999999999999999999999998888
Q ss_pred HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594 284 LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG 363 (542)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 363 (542)
....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|+|++
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence 888888999999999999999999999999999999999999999999999999999999985 4599999999999996
Q ss_pred c
Q psy12594 364 K 364 (542)
Q Consensus 364 ~ 364 (542)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 4
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.7e-26 Score=216.47 Aligned_cols=239 Identities=19% Similarity=0.268 Sum_probs=221.4
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
....+.+.++|+++++.++..|+.+|.++.+. .++.+..+.+.|+++.|+++|+++++.++..++++|.+++.++++.+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 34578899999999999999999999887732 57778889999999999999999999999999999999999887877
Q ss_pred h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
. +.+.|+++.|+.+|+++++.++..|+++|.+++...+.....+.+.|+++.|+++++++++.++..++++|+|++.++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 7 899999999999999999999999999999999877665588999999999999999999999999999999999988
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
++....+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.++++ |+.++.+++++++..|+++|.+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999988877888889999999 99999999999999999999999
Q ss_pred hc
Q psy12594 278 CK 279 (542)
Q Consensus 278 ~~ 279 (542)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 85
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.4e-25 Score=229.95 Aligned_cols=391 Identities=11% Similarity=0.081 Sum_probs=307.6
Q ss_pred HHHhCCchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy12594 36 FLKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ 114 (542)
Q Consensus 36 ~l~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~ 114 (542)
.|...|..+.+.+.+.+ .+..+...++..|...+ .++.+|..+ ...+++.|.+.+++ ..++..|+-+|+.+...
T Consensus 250 lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaAC--i~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~ 324 (778)
T 3opb_A 250 IFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSAC--IDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSF 324 (778)
T ss_dssp HHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHC--CSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred HHccccHHHHHHHHHhcccchHHHHHHHHHHHHHh--CCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence 44568889999988855 45667777778888888 777776666 56778999988865 57899999999998765
Q ss_pred Chhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccC-CCHhHHHHHHHHH
Q psy12594 115 DERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILAS-PQLSLKHAAAFAL 191 (542)
Q Consensus 115 ~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~-~~~~~~~~a~~~L 191 (542)
...... +. ...+.++++|.+++.+.+..|++.|+.++. .+..++.+.+. |+++.|+++++. .+..+...++.+|
T Consensus 325 ~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL 401 (778)
T 3opb_A 325 TKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM 401 (778)
T ss_dssp GTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHH
T ss_pred CCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 432222 22 267888899988876779999999999987 55667777766 669999999995 6788999999999
Q ss_pred HHHhcCCH-------------------------------------H-HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHH
Q psy12594 192 DGIVKHSP-------------------------------------E-LAESASDCDVIPLLIKALNNDEVNVKADAFLCL 233 (542)
Q Consensus 192 ~nl~~~~~-------------------------------------~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 233 (542)
.|++...+ + .+..+.+.|++|.|+.++.+.++.+++.++|+|
T Consensus 402 ~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL 481 (778)
T 3opb_A 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRII 481 (778)
T ss_dssp HHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99987332 1 345677899999999999999999999999999
Q ss_pred HHHhcCChhhHHHHHhhchHH-HHHhhcCCChh---HHHHHHHHHHHHhcCC-hHHHHHHHh---cCCHHHHHHhhhc-C
Q psy12594 234 ADIAKDSPSLASTIADGATTL-AVEHLTYPHGL---VQKNAATLLRDMCKHN-LRLANLVVL---AGGLDGLLRLIDC-N 304 (542)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~---v~~~a~~~L~~L~~~~-~~~~~~~~~---~~~i~~Lv~lL~~-~ 304 (542)
.+|+.+ ++.+..+++.|+++ |+.+|.+.... .+..|+.+|.++.... |... +-. .+++++|+.+|.. +
T Consensus 482 ~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~--f~~~~~~~aI~pLv~LL~~~~ 558 (778)
T 3opb_A 482 YNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI--FKKYSALNAIPFLFELLPRST 558 (778)
T ss_dssp HHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH--SSSSCSTTHHHHHHHTSCCSS
T ss_pred HHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH--cCCCccccchHHHHHHcCCCC
Confidence 999977 57999999999999 99999988543 8999999999998544 4432 111 3889999999983 2
Q ss_pred Ccc-------------chHHHHHHHhHhhcCC----hHHHHHHHhh-CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594 305 GGY-------------NSLPAIMALGYMSAQS----EQIAEQIIEL-QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS 366 (542)
Q Consensus 305 ~~~-------------~~~~a~~~L~~l~~~~----~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 366 (542)
... .+..|+.+|.||+..+ ++.+..+++. |+++.|..++.+++ ..+|.+|+++++|++. +
T Consensus 559 ~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n-~~VrrAA~elI~NL~~-~ 636 (778)
T 3opb_A 559 PVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN-VPLQRSTLELISNMMS-H 636 (778)
T ss_dssp SCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHT-S
T ss_pred CcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCC-HHHHHHHHHHHHHHhC-C
Confidence 211 1679999999999976 3446667774 99999999999854 5899999999999976 4
Q ss_pred hHHH-HHHHHc------CChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh-----------CCCchhhHHhhcCC--CCH
Q psy12594 367 VDNV-TALCEE------NVLSTLLSKITQTCVSDNLKSKCKNALNILIPK-----------CENPKELEQMLLGN--VSE 426 (542)
Q Consensus 367 ~~~~-~~l~~~------~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~-----------~~~i~~L~~lL~~~--~~~ 426 (542)
++.+ +.+.+. +.++.|+.++..+ ++++|+.|+|||+|+... .+.++.++.+|+ + .++
T Consensus 637 ~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~-~~~~~~ 713 (778)
T 3opb_A 637 PLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFA-DQIDDI 713 (778)
T ss_dssp GGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHH-HTTTCH
T ss_pred cHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHh-ccCCCH
Confidence 4443 344322 2378999999876 679999999999999421 145778899998 6 899
Q ss_pred HHHHHHHHHHHhhCCC
Q psy12594 427 ELLASILCAFAKILPC 442 (542)
Q Consensus 427 ~v~~~~l~~l~~ll~~ 442 (542)
+++..++..+.|+...
T Consensus 714 ~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 714 ELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999863
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-25 Score=228.75 Aligned_cols=382 Identities=10% Similarity=0.051 Sum_probs=300.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC
Q psy12594 18 LCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN 97 (542)
Q Consensus 18 ~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~ 97 (542)
..+++.+...|-++.+|+.+ ..++++.|..++++ ..+|..|+.+|.++.+..... ...+ ....+.+.+.|.+++
T Consensus 274 ~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~-~~si--~~La~~~~~~L~~~~ 347 (778)
T 3opb_A 274 KELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT-CINL--KQLSEIFINAISRRI 347 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT-TCCH--HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC-cCcH--HHHHHHHHHHHhcCC
Confidence 56778888888888887777 56778999999976 588999999999988332211 0111 125567777787777
Q ss_pred HHHHHHHHHHHHHHhcCChhhhhH-hhcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCCh------------------
Q psy12594 98 KHYKKTALHMLTCVAQQDERCAGL-IEDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNK------------------ 157 (542)
Q Consensus 98 ~~~~~~a~~~L~~l~~~~~~~~~~-~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~------------------ 157 (542)
.+.+..|+..|..++...+....+ .+.|+++.|+.++++ .+..+...++.+|.|++...+
T Consensus 348 ~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~ 427 (778)
T 3opb_A 348 VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX 427 (778)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence 677999999999998766444344 455779999999995 677888999999999985322
Q ss_pred -------------------H-HHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594 158 -------------------H-FAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217 (542)
Q Consensus 158 -------------------~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 217 (542)
+ .++.+.+.|++|.|+.+++++++.+++.++|+|.||+. +++.+..+++.|+++.|+.+
T Consensus 428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~l 506 (778)
T 3opb_A 428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEY 506 (778)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHH
T ss_pred cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 1 45667788999999999999999999999999999997 68899999999999999999
Q ss_pred hcCCCHH---HHHHHHHHHHHHhcCChhhHHHHHh---hchHH-HHHhhcC-CCh-------------hHHHHHHHHHHH
Q psy12594 218 LNNDEVN---VKADAFLCLADIAKDSPSLASTIAD---GATTL-AVEHLTY-PHG-------------LVQKNAATLLRD 276 (542)
Q Consensus 218 l~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~-L~~lL~~-~~~-------------~v~~~a~~~L~~ 276 (542)
+.+.... .+..|+++|+++....... ..+.. .++++ |+.+|.. ++. --+..|+.+|.|
T Consensus 507 L~s~~~~~~~~k~~AA~ALArLlis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN 585 (778)
T 3opb_A 507 LANKQDIGEPIRILGCRALTRMLIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN 585 (778)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 9977544 8999999999999654211 11211 37889 9999983 221 127799999999
Q ss_pred HhcCC----hHHHHHHHh-cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh------CchHHHHHhhcC
Q psy12594 277 MCKHN----LRLANLVVL-AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL------QGVGSLQTILQC 345 (542)
Q Consensus 277 L~~~~----~~~~~~~~~-~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~l~~L~~ll~~ 345 (542)
|+..+ ++..+.+++ .|+++.|..++.+++..++.+|++++.||+.+.....+.+.+. +.++.|+.++..
T Consensus 586 LAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s 665 (778)
T 3opb_A 586 LASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL 665 (778)
T ss_dssp HHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC
T ss_pred HhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC
Confidence 99876 234555677 4899999999999999999999999999997544322233221 247889999987
Q ss_pred CChhhHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 346 PHKEQLQVAAAWTLGQIGKHSVDNVTALCEE-NVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 346 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
.+..+|.+|+|+|+|++..++..++.+++. ++++.++.++.+...+++++..++.++.|+..
T Consensus 666 -~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 666 -SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp -SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 456999999999999988888888999987 89999999999843368999999999999986
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.3e-23 Score=191.02 Aligned_cols=200 Identities=22% Similarity=0.302 Sum_probs=187.4
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~ 201 (542)
...+..+.|+.+|+++++.++..|+++|.+++..++..+..+.+.|+++.|+++|+++++.++..|+++|+|++.++++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34578999999999999999999999999999889999999999999999999999999999999999999999888999
Q ss_pred HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594 202 AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 202 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~ 280 (542)
+..+++.|+++.|+.++.++++.++..++|+|++++...++....+.+.++++ |+.++.++++.++..++++|.+++.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998877778888999999 99999999999999999999999998
Q ss_pred ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 281 NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 281 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
.+.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88888888899999999999999999999999999999864
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=1.6e-23 Score=190.24 Aligned_cols=198 Identities=20% Similarity=0.307 Sum_probs=186.3
Q ss_pred hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12594 82 ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160 (542)
Q Consensus 82 ~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 160 (542)
..+..+.|+.+|.++++.++..|+++|.+++..+++... +.+.|+++.|+++|+++++.++..|+++|++++..++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 467889999999999999999999999999988877777 9999999999999999999999999999999998899999
Q ss_pred HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
..+.+.|+++.|+.+|+++++.++..|+++|+|++.++++....+++.|+++.|++++.+++++++..++++|++++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999988888888999999999999999999999999999999999988
Q ss_pred hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 241 PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 241 ~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
++.+..+.+.|+++ |+.++.++++.+++.|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88888899999999 9999999999999999999999985
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=1.1e-21 Score=185.30 Aligned_cols=224 Identities=14% Similarity=0.067 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHh
Q psy12594 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ-ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKA 217 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 217 (542)
.+-+..|+..|.+++. +.++...+.+.|++|.|+. +|+++++.++..|+|+|+|++.+++..+..+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678889999999987 4557888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHH
Q psy12594 218 LNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLD 295 (542)
Q Consensus 218 l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~ 295 (542)
+++ ++..+++.|+|+|++++++.+.....+...++++ |+.+|++++..++..++|+|.+++.++++..+.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 995 5899999999999999998877777888889999 99999999999999999999999998888888899999999
Q ss_pred HHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh--Cc---hHHHHHhhcCCC-hhhHHHHHHHHHHHhh
Q psy12594 296 GLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL--QG---VGSLQTILQCPH-KEQLQVAAAWTLGQIG 363 (542)
Q Consensus 296 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~---l~~L~~ll~~~~-~~~v~~~a~~~L~~l~ 363 (542)
.|+.+|.++++.++..++++|++|+...+......... .+ +..-.+-++... ..++...+...+.++.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998865443332211 11 111223334212 2355556666666663
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=2e-21 Score=183.51 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHH-hhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhh
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK-DLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISS 133 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~l 133 (542)
+.+..|+..|..++ .+.++...+.+.|+++.++. +|.++++.++..|+++|++++.+++..+. +++.|+++.|+.+
T Consensus 55 e~k~~Al~~L~~lv--~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHH--TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 56788999999999 88788888999999999999 99999999999999999999999988888 8999999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594 134 LHD-FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212 (542)
Q Consensus 134 L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~ 212 (542)
|++ +++.++..|+|+|++++.+++...+.+.+.|+++.|+.+|++++..++..|+|+|.+++.++++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 985 4799999999999999998888888999999999999999999999999999999999998899999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhh-----chHH-HHHhhcCC--ChhHHHHHHHHHHHHh
Q psy12594 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADG-----ATTL-AVEHLTYP--HGLVQKNAATLLRDMC 278 (542)
Q Consensus 213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~ 278 (542)
.|+.+|.++++++++.++++|++|+...+......... ..+. -+..++.. ..++...+..++.++.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998865443332221 1122 23333422 3566666776666665
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=6e-22 Score=178.76 Aligned_cols=196 Identities=16% Similarity=0.156 Sum_probs=173.0
Q ss_pred CChHHHHhhhcCCCH--HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594 125 KDLDSIISSLHDFDP--DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA 202 (542)
Q Consensus 125 g~v~~Lv~lL~~~~~--~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~ 202 (542)
-.++.++++|+++++ .++..|+++|.+++..++..+..+.+.|+||.|+++|+++++++|+.|+|+|.||+.++++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999987 899999999999998889999999999999999999999999999999999999999889999
Q ss_pred HHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc----------------CCCh
Q psy12594 203 ESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT----------------YPHG 264 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~----------------~~~~ 264 (542)
..+.+.|++|.|+++|. .++.++++.++.+|+||+... ..+..+.+. +++ |+.++. ..++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99999999999999998 579999999999999999876 467767664 577 887653 1267
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhc-CCHHHHHHhhhcC------CccchHHHHHHHhHhhcC
Q psy12594 265 LVQKNAATLLRDMCKHNLRLANLVVLA-GGLDGLLRLIDCN------GGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~ 322 (542)
+++++++++|+||+..+++..+.+.+. |+++.|+.+++.. +...+++++.+|.||+..
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999998888888888876 6689999999873 446889999999999764
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=173.43 Aligned_cols=194 Identities=11% Similarity=0.120 Sum_probs=171.4
Q ss_pred cHHHHHHhhccCCH--HHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594 85 LVALVLKDLTKQNK--HYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (542)
.++.++++|.++++ .++..++..|.+++..+++.+. +++.|++|.|+++|.++++++++.|+|+|.+++..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999998877 8999999999999988878877 99999999999999999999999999999999998899999
Q ss_pred HHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc----------------CCCHH
Q psy12594 162 RIVQCGALPPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN----------------NDEVN 224 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~----------------~~~~~ 224 (542)
.+.+.|+||.|+++|+ +++.++++.|+.+|.||+. .++.+..+.+ ++++.|+.++. ..+++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 5789999999999999998 4567777775 56899988653 13679
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHh-hchHH-HHHhhcCC------ChhHHHHHHHHHHHHhcC
Q psy12594 225 VKADAFLCLADIAKDSPSLASTIAD-GATTL-AVEHLTYP------HGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 225 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~-L~~lL~~~------~~~v~~~a~~~L~~L~~~ 280 (542)
+++.+..+|.||+..+++.++.+.+ .|+++ |+.+++.. +...+++++.+|+||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999987788998887 46789 99998753 678999999999999853
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.83 E-value=3.5e-19 Score=187.89 Aligned_cols=410 Identities=12% Similarity=0.072 Sum_probs=295.3
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
..+|.+..+++++++.+|..|+.+|+.++....++ ......+|.+..++.++++.+|..|+.+|..++...+..
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD----NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH----HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence 45677778888899999999999999998222222 123467888888898899999999999999987543221
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~ 200 (542)
.....+++.+..+++++++.+|..++.+|+.++...+. ......+++.++++++++++.+|..++++|+.++...+.
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 12234788888999988999999999999999852211 122345689999999999999999999999999874322
Q ss_pred H-HHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 201 L-AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 201 ~-~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
. +.......++|.+..++.++++.+|..++++|..++..-+. ......+++ +..++.+.+++++..++.++..+.
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN 391 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 1 11122245678899999999999999999999998754221 112235778 889999889999999999999887
Q ss_pred cCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHH
Q psy12594 279 KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358 (542)
Q Consensus 279 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~ 358 (542)
....... .....+|.+..++.+.++.++..++.+++.++..-... .....+++.+...+.+. +..+|..|+.+
T Consensus 392 ~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~ 464 (588)
T 1b3u_A 392 EVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSN 464 (588)
T ss_dssp HHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHH
T ss_pred HhcCHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHH
Confidence 5432111 12356788889999999999999999999887521110 11224678888888874 46899999999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------CCchhhHHhhcCCCCHHHHHH
Q psy12594 359 LGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------ENPKELEQMLLGNVSEELLAS 431 (542)
Q Consensus 359 L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------~~i~~L~~lL~~~~~~~v~~~ 431 (542)
++.++...... .....++|.|..++.++ +..+|..++++++.+.... ..++.|..++. +.+++++..
T Consensus 465 l~~l~~~~~~~---~~~~~llp~l~~~~~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-d~~~~Vr~~ 538 (588)
T 1b3u_A 465 LKKLVEKFGKE---WAHATIIPKVLAMSGDP--NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG-DPVANVRFN 538 (588)
T ss_dssp HHHHHHHHCHH---HHHHHTHHHHHHTTTCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-CSCHHHHHH
T ss_pred HHHHHHHhCch---hHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC-CCCchHHHH
Confidence 99997542221 12345788888877765 5699999999999997532 35788888898 889999999
Q ss_pred HHHHHHhhCCCChhhhhHHHHhcchHHhhhcC--CCCcHHH-HHHHHhcc
Q psy12594 432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEIE--PTPEIAP-HLKTINAC 478 (542)
Q Consensus 432 ~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~--~~~~~~~-a~~~l~~~ 478 (542)
++.++..+...... .+.....++.+..+. ++.+++. |...+..+
T Consensus 539 a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 539 VAKSLQKIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhch---hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 99999988754321 222333445555554 4555663 55555443
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=3.1e-19 Score=196.49 Aligned_cols=381 Identities=11% Similarity=0.089 Sum_probs=270.1
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG- 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~- 120 (542)
+-+.++..+.++++.+|..++.++..++....+.. ..+.++.++..+.++++.++..++.+|..++...+....
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhch
Confidence 34456667788889999999999999993322221 456889999999999999999999999999864332211
Q ss_pred -H---hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 121 -L---IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 121 -~---~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
. .-...++.++++++++++.+|..|+++|..+....+....... ..+++.+++++.++++.+|..++++|.+++.
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 0 0124678888999999999999999999988754432111111 1457888889999999999999999999998
Q ss_pred CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--hhchHH-HHHhh-----------cC-
Q psy12594 197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA--DGATTL-AVEHL-----------TY- 261 (542)
Q Consensus 197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~-L~~lL-----------~~- 261 (542)
..++.....+ .++++.+...+.+.+++++..+++++..+++... .+..+. -..+++ ++..+ .+
T Consensus 245 ~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~ 322 (852)
T 4fdd_A 245 VRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV 322 (852)
T ss_dssp HCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred hCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence 7765544333 2467888889999999999999999999997642 333221 135667 77776 23
Q ss_pred ----------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594 262 ----------PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII 331 (542)
Q Consensus 262 ----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 331 (542)
.+..++..+..+|..++...++. +. ..+++.+..++.++++.+|..|++++++++.+..+......
T Consensus 323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l 398 (852)
T 4fdd_A 323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398 (852)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH
T ss_pred ccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 12246888999999988643321 11 24677888888899999999999999999988765443322
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE 411 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~ 411 (542)
.++++.++..+.++ ++.+|..|+|++++++...+.......-.++++.|+..+.++ ++.+|..|+|+|.+++..++
T Consensus 399 -~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 399 -PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp -HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHG
T ss_pred -HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhh
Confidence 46889999999874 569999999999999753221111111224678888888876 57999999999999986532
Q ss_pred -----C----chhhHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594 412 -----N----PKELEQMLLGNVSEELLASILCAFAKI 439 (542)
Q Consensus 412 -----~----i~~L~~lL~~~~~~~v~~~~l~~l~~l 439 (542)
+ ++.|..+++ ..+.+....++.++..+
T Consensus 475 ~~l~~~l~~ll~~L~~~l~-~~~~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 475 TELVPYLAYILDTLVFAFS-KYQHKNLLILYDAIGTL 510 (852)
T ss_dssp GGGGGGHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHH
Confidence 1 344555555 44444444444444443
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.82 E-value=2e-18 Score=189.95 Aligned_cols=409 Identities=12% Similarity=0.086 Sum_probs=289.1
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhh---cCCChHHHHHHHHHHHHhHccCC----
Q psy12594 5 SVKNSIDHYQ----RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLL---ADKVPSIQHAALATLGKLMCAKH---- 73 (542)
Q Consensus 5 ~~~~~~~~~~----~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL---~s~~~~v~~~a~~~L~~l~~~~~---- 73 (542)
++.|.+.... ..|+.+.+.|..+..+| +..+.|..++ .+.++.+|..|+..|.+......
T Consensus 14 ~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p---------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~ 84 (852)
T 4fdd_A 14 QILQLLKESQSPDTTIQRTVQQKLEQLNQYP---------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84 (852)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHTTSH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCC
Confidence 4445554332 35777777777665433 3333444444 46788999999999999883221
Q ss_pred hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594 74 VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA 153 (542)
Q Consensus 74 ~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 153 (542)
++.+.. +-+.+++.|.++++.+|..++.++..++...... .-.+.++.|++.+.++++.+++.++.+|..++
T Consensus 85 ~~~~~~-----ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 85 NGVTDF-----IKSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp HHHHHH-----HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 233332 3346777788889999999999999998654110 11357889999999999999999999999998
Q ss_pred cCChHHHHH-HH---HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHH
Q psy12594 154 KDNKHFAER-IV---QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADA 229 (542)
Q Consensus 154 ~~~~~~~~~-i~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 229 (542)
...+..... .. -..+++.++++++++++.+|..|+++|.++....+......+ ...++.+..++.++++++|..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHH
Confidence 643332111 00 113577888888989999999999999998875443221111 2466888888889999999999
Q ss_pred HHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHh---cCCHHHHHHhh----
Q psy12594 230 FLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVL---AGGLDGLLRLI---- 301 (542)
Q Consensus 230 ~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~---~~~i~~Lv~lL---- 301 (542)
+++|..++...++...... .++++ ++..+.+.++.++..+++++..++...... + ... ...+|.++..+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e 312 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSD 312 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcH
Confidence 9999999987664433322 35788 889999999999999999999998654221 1 111 13455666655
Q ss_pred -------hc-----------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhh
Q psy12594 302 -------DC-----------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIG 363 (542)
Q Consensus 302 -------~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 363 (542)
.+ .++.++..|..+|+.++...++. +. ..+++.+...+.++ +..+|..|++++++++
T Consensus 313 ~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIA 387 (852)
T ss_dssp HHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTT
T ss_pred hHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 22 23457889999999987643321 11 24677788888774 5799999999999998
Q ss_pred cCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC----------CCchhhHHhhcCCCCHHHHHHHH
Q psy12594 364 KHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC----------ENPKELEQMLLGNVSEELLASIL 433 (542)
Q Consensus 364 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~----------~~i~~L~~lL~~~~~~~v~~~~l 433 (542)
.+.++..... -.++++.++..+.++ ++.||..|+|+|+++.... +.++.|...+. +.++.++..++
T Consensus 388 ~~~~~~~~~~-l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~-d~~~~vr~~a~ 463 (852)
T 4fdd_A 388 EGCMQGMIPY-LPELIPHLIQCLSDK--KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQEAAC 463 (852)
T ss_dssp TTTHHHHGGG-HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT-CSSHHHHHHHH
T ss_pred hcchHHHHHH-HHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-CCCHHHHHHHH
Confidence 8776543322 245789999999877 5799999999999987531 12467777787 88899999999
Q ss_pred HHHHhhCCCC
Q psy12594 434 CAFAKILPCD 443 (542)
Q Consensus 434 ~~l~~ll~~~ 443 (542)
++|.++....
T Consensus 464 ~aL~~l~~~~ 473 (852)
T 4fdd_A 464 SAFATLEEEA 473 (852)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987543
No 42
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=1.3e-18 Score=183.54 Aligned_cols=399 Identities=10% Similarity=0.046 Sum_probs=291.7
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL 93 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L 93 (542)
...|..+.+++..++..-... ......+|.+..+++++++.+|..|+.+|..++....++. .....+|.+..++
T Consensus 178 ~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~~ 251 (588)
T 1b3u_A 178 PMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA 251 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH----HHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHc
Confidence 345666777777666532221 2235678899999999999999999999999983323221 1234677888888
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHH
Q psy12594 94 TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKH-FAERIVQCGALPPL 172 (542)
Q Consensus 94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L 172 (542)
.+++..+|..++.+|+.++..... ......+++.+..+++++++.+|..++++|..++...+. .+....-..++|.+
T Consensus 252 ~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 252 EDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp TCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 888999999999999998753211 122335689999999999999999999999999854321 11112233567889
Q ss_pred HHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhch
Q psy12594 173 VQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGAT 252 (542)
Q Consensus 173 ~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 252 (542)
..+++++++.+|..++++|+.++..-.. .......+|.+..++.+.++++|..++.++..++...... .....+
T Consensus 330 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~ 403 (588)
T 1b3u_A 330 KELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSL 403 (588)
T ss_dssp HHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence 9999999999999999999998863111 1112346789999999999999999999999887643211 122467
Q ss_pred HH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594 253 TL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII 331 (542)
Q Consensus 253 i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 331 (542)
+| +..++.+.+..++..++.++..++..-... ......++.+..++.++++.++..|+.+++.++...... ..
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~ 477 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WA 477 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hH
Confidence 88 889998889999999999999987421110 111245788889999999999999999999987642221 12
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE 411 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~ 411 (542)
...+++.|..++.+ ++..+|..++++++.++..-.. ......+++.++..+.++ +++||..++++|+.+....+
T Consensus 478 ~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 478 HATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhc
Confidence 24678888887776 4468999999999999653221 123346889999999876 56999999999999986432
Q ss_pred -------CchhhHHhhcCCCCHHHHHHHHHHHHhh
Q psy12594 412 -------NPKELEQMLLGNVSEELLASILCAFAKI 439 (542)
Q Consensus 412 -------~i~~L~~lL~~~~~~~v~~~~l~~l~~l 439 (542)
.+|.|..++. +.|++++..+..++..+
T Consensus 552 ~~~~~~~~~p~l~~l~~-d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 552 NSTLQSEVKPILEKLTQ-DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHcC-CCchhHHHHHHHHHHHh
Confidence 3566767777 88999999999998876
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.81 E-value=2.4e-16 Score=158.81 Aligned_cols=413 Identities=13% Similarity=0.123 Sum_probs=308.7
Q ss_pred CchHHHHhhhc-CCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCh
Q psy12594 41 NVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK--QNKHYKKTALHMLTCVAQQDE 116 (542)
Q Consensus 41 g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~--~~~~~~~~a~~~L~~l~~~~~ 116 (542)
..|+.|+.-++ +.-.+-|..|+..|..++ .. +.. +..++++.|+..|+. ++.++.+.++.+|.++....+
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s--k~y~~~----Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLS--KKYRLE----VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTT--TTTTTH----HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHH--HHhHHH----hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 34566666665 445788999999999998 44 221 235689999999986 578888999999988765432
Q ss_pred h-----------------hhh--HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHc-CChHHHHHh
Q psy12594 117 R-----------------CAG--LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKH-FAERIVQC-GALPPLVQI 175 (542)
Q Consensus 117 ~-----------------~~~--~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~i~~~-g~i~~L~~l 175 (542)
+ ... +.+.+.++.|+.+|++.+..+|..++.+|..++...+. +++.+... ++++.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 112 23567899999999999999999999999999987777 88888866 889999999
Q ss_pred ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594 176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE----VNVKADAFLCLADIAKDSPSLASTIADGA 251 (542)
Q Consensus 176 l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 251 (542)
|.++...+|..++..|.+|+.++++..+.+.-+|+++.|..++.... ..+...|+.++.||.+.++.++..+.+.+
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 99999999999999999999999999999888999999999998543 36889999999999999988999999999
Q ss_pred hHH-HHHhhcCCCh------hHHHH---HHHHHHHHhcC------ChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHH
Q psy12594 252 TTL-AVEHLTYPHG------LVQKN---AATLLRDMCKH------NLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAI 313 (542)
Q Consensus 252 ~i~-L~~lL~~~~~------~v~~~---a~~~L~~L~~~------~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~ 313 (542)
.++ |..+|..+++ ....+ +..+++-|+.. .+.+...+.+.|+++.|++++... ...++..|+
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 999 9999986532 13333 56666666654 235667788999999999999876 345889999
Q ss_pred HHHhHhhcCChHHHHHHHhhC---------chHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc--------
Q psy12594 314 MALGYMSAQSEQIAEQIIELQ---------GVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE-------- 376 (542)
Q Consensus 314 ~~L~~l~~~~~~~~~~~~~~~---------~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-------- 376 (542)
.+++.+..+++..+..+.+.. ++..|+.++.+.....+|.+|+.++..+..++++.+..+...
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~ 414 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDA 414 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCccccc
Confidence 999999999999888876543 344445556554557899999999999999998776666643
Q ss_pred --CCh---HHHHHHHhcCCCChHHH-HHHHHHHHHHHhhC------------------CC---chhhHHhhcCCCCHHHH
Q psy12594 377 --NVL---STLLSKITQTCVSDNLK-SKCKNALNILIPKC------------------EN---PKELEQMLLGNVSEELL 429 (542)
Q Consensus 377 --~~l---~~L~~ll~~~~~~~~v~-~~a~~aL~nl~~~~------------------~~---i~~L~~lL~~~~~~~v~ 429 (542)
+.+ ..+...+-+.+ ..+ --|+.+|..++... +. ++.+..+|....++.+.
T Consensus 415 ~~~~~s~g~ll~~~l~s~d---~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~ 491 (651)
T 3grl_A 415 TGNTVSAGQLLCGGLFSTD---SLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTR 491 (651)
T ss_dssp TTSSSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHH
T ss_pred CCCCCCcchhhhhhhccCc---hHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHH
Confidence 111 12334444332 222 23666777775210 11 34445555424566777
Q ss_pred HHHHHHHHhhCCCChhhhhHHHHhc-chHHhhhc
Q psy12594 430 ASILCAFAKILPCDPVARRSFVTSH-CLRKVQEI 462 (542)
Q Consensus 430 ~~~l~~l~~ll~~~~~~~~~~~~~g-~~~~l~~l 462 (542)
.-.+-.|..-+..++..-+.|...| .++.|...
T Consensus 492 vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~ 525 (651)
T 3grl_A 492 VGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQ 525 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHH
Confidence 7777777788888887766666554 46666543
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.79 E-value=1e-17 Score=175.89 Aligned_cols=373 Identities=15% Similarity=0.128 Sum_probs=270.2
Q ss_pred CCchHHHHhhhcCCChHHHHHHH-HHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAAL-ATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~-~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
.|-+..+.+.|++.+...+..++ +.+..+. ...+. ..+++.+++++.+++..+|+.+..++..++...++.
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~--~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~ 83 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMT--VGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM 83 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHH--TTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHH--CCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH
Confidence 46677888899998887777766 4444444 22211 336778889999999999999988998888655444
Q ss_pred hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
.. -+++.+.+.|+++++.+|..|+.+|+++. .++..+.+ ++.+.+++.++++.+|..|++++.++...+
T Consensus 84 ~~----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~ 152 (591)
T 2vgl_B 84 AI----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN 152 (591)
T ss_dssp HH----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS
T ss_pred HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhC
Confidence 33 24678899999999999999999999886 34443433 678999999999999999999999999876
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
++... +.+.++.+..++.++++.++..|+++|..++..+++..........+. |+..+.+.++..+...+.++..+
T Consensus 153 p~~~~---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 153 AQMVE---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp CCCHH---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred hhhcc---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 65332 235679999999999999999999999999987653311111234566 88888888999999999999888
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc---CChHHHHHHHhhCchHHHHHhhcCCChhhHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA---QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVA 354 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~ 354 (542)
+..++.... ..++.+..++++.++.++..|++++.++.. .+++..+.+. ..+.+.|+.++. +++.+|..
T Consensus 230 ~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~ 301 (591)
T 2vgl_B 230 NPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYV 301 (591)
T ss_dssp CCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHH
T ss_pred CCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHH
Confidence 866554332 456788889999999999999999999864 2334443333 255667776654 34688888
Q ss_pred HHHHHHHhhcCChHH------------------HHHH-------HHcC----ChHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy12594 355 AAWTLGQIGKHSVDN------------------VTAL-------CEEN----VLSTLLSKITQTCVSDNLKSKCKNALNI 405 (542)
Q Consensus 355 a~~~L~~l~~~~~~~------------------~~~l-------~~~~----~l~~L~~ll~~~~~~~~v~~~a~~aL~n 405 (542)
|+.+|+.+....|+. +... .+.. +++.|...+.+. +.++|.+++++|++
T Consensus 302 aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~ 379 (591)
T 2vgl_B 302 ALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV--DVDFVRKAVRAIGR 379 (591)
T ss_dssp HHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 888888886422211 1111 1222 334444555444 57899999999999
Q ss_pred HHhhC-----CCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594 406 LIPKC-----ENPKELEQMLLGNVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 406 l~~~~-----~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
+..+. .+++.|++++. +....+...++.++.++++..+.
T Consensus 380 la~~~~~~~~~~v~~Ll~ll~-~~~~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 380 CAIKVEQSAERCVSTLLDLIQ-TKVNYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHhChhHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHCcc
Confidence 87542 34788888888 88888888888888887665544
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.78 E-value=3.6e-15 Score=150.37 Aligned_cols=352 Identities=11% Similarity=0.085 Sum_probs=268.0
Q ss_pred HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCCh
Q psy12594 38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE 116 (542)
Q Consensus 38 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~ 116 (542)
.+.+.++.|+.+|++.+..+|..++..|..|+....+..++.+... ++++.|+.+|.+....+|..++..|.+++.+++
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~ 198 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNG 198 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCH
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCH
Confidence 4578999999999999999999999999999943335588888855 999999999999999999999999999999999
Q ss_pred hhhh-HhhcCChHHHHhhhcCCC----HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH------hHHH
Q psy12594 117 RCAG-LIEDKDLDSIISSLHDFD----PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL------SLKH 185 (542)
Q Consensus 117 ~~~~-~~~~g~v~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~------~~~~ 185 (542)
++++ +.-+|+++.|+.++..+. ..+...++.+|.++.+.++.++..+.+.|+++.|..+++.++. ....
T Consensus 199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~ 278 (651)
T 3grl_A 199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT 278 (651)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence 9999 777899999999998655 3778889999999999999999999999999999999975431 1222
Q ss_pred ---HHHHHHHHHhcC------CHHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhhc---
Q psy12594 186 ---AAAFALDGIVKH------SPELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLASTIADGA--- 251 (542)
Q Consensus 186 ---~a~~~L~nl~~~------~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--- 251 (542)
.++.++.-+... .+.+...+.+.|+++.+++++..+ ...++..|+.+++.+.+.++..++.+....
T Consensus 279 N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~ 358 (651)
T 3grl_A 279 NLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPS 358 (651)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESS
T ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCC
Confidence 255566666654 235667888999999999998865 788999999999999999988888876532
Q ss_pred ------hHH-HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHHhcC----------CH---HHHHHhhhcCCccchH
Q psy12594 252 ------TTL-AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVVLAG----------GL---DGLLRLIDCNGGYNSL 310 (542)
Q Consensus 252 ------~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~----------~i---~~Lv~lL~~~~~~~~~ 310 (542)
++. |+.++.+. ..++|..++.|+..+..++++....+...- .+ ..+..-+.+.++.-.-
T Consensus 359 ~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~w 438 (651)
T 3grl_A 359 NPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNW 438 (651)
T ss_dssp SSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHH
T ss_pred CCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHH
Confidence 444 55556554 688999999999999988876665554320 01 1233444455554444
Q ss_pred HHHHHHhHhhcCChHHHHHHHh-----------hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcC-C
Q psy12594 311 PAIMALGYMSAQSEQIAEQIIE-----------LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEEN-V 378 (542)
Q Consensus 311 ~a~~~L~~l~~~~~~~~~~~~~-----------~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-~ 378 (542)
-|+.++.++..++++......+ -..++.+..+|..+.+..++..-+..|..-..+++.....+++.+ .
T Consensus 439 fAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~ 518 (651)
T 3grl_A 439 CAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSAN 518 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCch
Confidence 5677788888777766555443 123555666666654455555555555555577888888888765 5
Q ss_pred hHHHHHHHhcC
Q psy12594 379 LSTLLSKITQT 389 (542)
Q Consensus 379 l~~L~~ll~~~ 389 (542)
++.|+..+.++
T Consensus 519 l~~L~~~i~~~ 529 (651)
T 3grl_A 519 VPFLTGQIAEN 529 (651)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhc
Confidence 88888877643
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.77 E-value=1.2e-16 Score=151.69 Aligned_cols=258 Identities=18% Similarity=0.070 Sum_probs=205.2
Q ss_pred HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh
Q psy12594 38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER 117 (542)
Q Consensus 38 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~ 117 (542)
.+.+.++.|+.+|+++++.+|..|+.+|+++. ..+.++.|+.++.++++.+|..++++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC------------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 35678999999999999999999999999997 234678899999999999999999999988643321
Q ss_pred hhhHhhcCChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 118 CAGLIEDKDLDSII-SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 118 ~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
... .++.|. .+++++++.+|..++++|+.+....+.... .+++.|+.+++++++.+|..++++|+++..
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 233444 245788999999999999999854332222 237889999999999999999999998865
Q ss_pred CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594 197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR 275 (542)
Q Consensus 197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~ 275 (542)
...++.|..++.++++.+|..++++|+.+....+ ..++ |+.++.++++.++..++++|.
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3588999999999999999999999999864433 5677 999999999999999999999
Q ss_pred HHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHH
Q psy12594 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA 355 (542)
Q Consensus 276 ~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a 355 (542)
.+. ....++.|+..+.+++ ++..++.+|+.+.. ...++.|..++...+++.+...+
T Consensus 218 ~~~-----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 218 YRK-----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp HTT-----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred HhC-----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 886 2457788888887744 89999999998853 25788899999876666777777
Q ss_pred HHHHHH
Q psy12594 356 AWTLGQ 361 (542)
Q Consensus 356 ~~~L~~ 361 (542)
...|.+
T Consensus 274 ~~~l~~ 279 (280)
T 1oyz_A 274 IDKLKR 279 (280)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 766643
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=2.1e-16 Score=165.84 Aligned_cols=368 Identities=14% Similarity=0.135 Sum_probs=267.6
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG- 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~- 120 (542)
.+|.+..++.+.++.+|..|+.++.++... +++.. .+.++++.+..+|.++++.++..|+.+|..++..+++...
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 456688899999999999999999999831 23321 1246788999999999999999999999999977653311
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC---
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH--- 197 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~--- 197 (542)
....+.+..|+..+.+.++..+...+.++..+...++.... .+++.+..++++.++.++..|++++..+...
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 11224567788888888999998888888888755544333 3477788889999999999999999998742
Q ss_pred CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 198 SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
+++....+. ..+.+.|+.++. +++++|..++.+|..+....++... ..+. +. .+.+++..++..+++.+..
T Consensus 273 ~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~ 344 (591)
T 2vgl_B 273 DSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIR 344 (591)
T ss_dssp TTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHH
Confidence 333333333 455677776664 8899999999999999876543221 1122 22 2224458999999999999
Q ss_pred HhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594 277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA 356 (542)
Q Consensus 277 L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 356 (542)
++.... .+ .+++.|..++.+.++.++..++++|+.++...+.... ..++.|+.++.... +.++..+.
T Consensus 345 l~~~~n--v~-----~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~-~~v~~e~i 411 (591)
T 2vgl_B 345 LASQAN--IA-----QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKV-NYVVQEAI 411 (591)
T ss_dssp TCCSST--HH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCC-HHHHHHHH
T ss_pred HCChhh--HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccc-hHHHHHHH
Confidence 985432 22 2456788899899999999999999999987654333 46788999998854 47888888
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHH-hhcC--CCCHHHHHHHH
Q psy12594 357 WTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ-MLLG--NVSEELLASIL 433 (542)
Q Consensus 357 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~-lL~~--~~~~~v~~~~l 433 (542)
.++.++....++. ...+++.|+..+.+.. .++++..++|+|+.........+.+++ +++. ..++.++..++
T Consensus 412 ~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~-~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l 485 (591)
T 2vgl_B 412 VVIRDIFRKYPNK-----YESIIATLCENLDSLD-EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLL 485 (591)
T ss_dssp HHHHHHHHHSCSS-----CCTTHHHHHHTTTTCC-SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHCcch-----HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHH
Confidence 8888887655542 2457788888887543 578999999999988654332233332 3321 45778999999
Q ss_pred HHHHhhCCCChh
Q psy12594 434 CAFAKILPCDPV 445 (542)
Q Consensus 434 ~~l~~ll~~~~~ 445 (542)
.++.++....+.
T Consensus 486 ~a~~Kl~~~~p~ 497 (591)
T 2vgl_B 486 TAIVKLFLKKPS 497 (591)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHhcCch
Confidence 999999877654
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.74 E-value=5.1e-16 Score=147.34 Aligned_cols=258 Identities=18% Similarity=0.142 Sum_probs=203.9
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~ 201 (542)
...+.++.|+..|.++++.+|..|+++|+++.. + +.++.|+.+++++++.+|..|+++|+.+..... .
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c
Confidence 355789999999999999999999999999863 2 238889999999999999999999999875221 1
Q ss_pred HHHhhhCCChHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 202 AESASDCDVIPLLI-KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 202 ~~~~~~~~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
... .++.|. .++.++++.+|..++++|+++....+... ...++ |+..+.++++.++..++++|.++..
T Consensus 88 ~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 223444 24568899999999999999985443222 25678 9999999999999999999998763
Q ss_pred CChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHH
Q psy12594 280 HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTL 359 (542)
Q Consensus 280 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 359 (542)
...++.|+.++.++++.++..++++|+.+....+ ..++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 3588999999999999999999999999854333 3567788888874 569999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHh
Q psy12594 360 GQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAK 438 (542)
Q Consensus 360 ~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ 438 (542)
+++. ++ ..++.|+..+.++ ++|..|+++|+.+... ..++.|..++....+++++..++..+.+
T Consensus 217 ~~~~--~~---------~~~~~L~~~l~d~----~vr~~a~~aL~~i~~~-~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 217 SYRK--DK---------RVLSVLCDELKKN----TVYDDIIEAAGELGDK-TLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHTT--CG---------GGHHHHHHHHTSS----SCCHHHHHHHHHHCCG-GGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHhC--CH---------hhHHHHHHHhcCc----cHHHHHHHHHHhcCch-hhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 9994 33 3788999999864 4999999999998643 6789999999734567888888887764
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.69 E-value=8.9e-15 Score=154.06 Aligned_cols=390 Identities=12% Similarity=0.108 Sum_probs=279.5
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~ 120 (542)
+.+..++++.+.+...+..+...+..++ .. ++.... .++.+.+-|.++++.++..|+.+|+++.. ++..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~--~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLL--DERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHC--CCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHh--CCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-
Confidence 4556678888889999988888888888 54 443222 45677888889999999999999999973 2322
Q ss_pred HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH
Q psy12594 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200 (542)
Q Consensus 121 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~ 200 (542)
..+++.+.++|.+.++.+|..|+.++.++....|+..+ ++++.+..++.+.++.++..|+++|..++..+++
T Consensus 141 ---~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 141 ---RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp ---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 24578889999999999999999999999976665332 5688889999999999999999999999987665
Q ss_pred HHHHhhhCCChHHHHHhhcC---------------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc----
Q psy12594 201 LAESASDCDVIPLLIKALNN---------------DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT---- 260 (542)
Q Consensus 201 ~~~~~~~~~~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~---- 260 (542)
....+ ...+|.++.+|.+ .++-.+..++.+|..++..++...+ ...+ |..++.
T Consensus 213 ~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 213 MLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTET 285 (618)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCC
T ss_pred HHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccc
Confidence 43333 2677888877653 4788899999999999987764333 3334 444432
Q ss_pred --CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHH
Q psy12594 261 --YPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGS 338 (542)
Q Consensus 261 --~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 338 (542)
+.+..+...+++++..+.. .+... ..+++.|..++.+.++.++..|+.+|+.++...+... . .....
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~-~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~ 354 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKS-ESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRST 354 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCC-CHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHH
T ss_pred ccchHHHHHHHHHHHHHhcCC-CHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHH
Confidence 2356899999999988754 23221 2456788899999999999999999999987544322 2 35667
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-----Cc
Q psy12594 339 LQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-----NP 413 (542)
Q Consensus 339 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-----~i 413 (542)
++..+.++ +..+|..|+.+|..++.... ... +++.|...+.+. +.++|..++.+|+.+..+.. ++
T Consensus 355 i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~--d~e~r~~~v~~I~~la~k~~~~~~~~v 424 (618)
T 1w63_A 355 IVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC--EPEFKADCASGIFLAAEKYAPSKRWHI 424 (618)
T ss_dssp HHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 78888874 56999999999999965432 222 346677777765 57999999999999987632 36
Q ss_pred hhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcC-CCCcHHHHHHHHhccC
Q psy12594 414 KELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIE-PTPEIAPHLKTINACF 479 (542)
Q Consensus 414 ~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~-~~~~~~~a~~~l~~~~ 479 (542)
+.|+++|. .....+...++..+..++...++.++..+.. -++.+..-. .....+.+.++|++|.
T Consensus 425 ~~ll~lL~-~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~-L~~~l~~~~~~~~~~~~~~wilGEy~ 489 (618)
T 1w63_A 425 DTIMRVLT-TAGSYVRDDAVPNLIQLITNSVEMHAYTVQR-LYKAILGDYSQQPLVQVAAWCIGEYG 489 (618)
T ss_dssp HHHHHHHH-HTGGGSCSSHHHHHHHHHHHSCSTHHHHHHH-HHHHHHHCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hccchhHHHHHHHHHHHHhcChhHHHHHHHH-HHHHHhcccccHHHHHHHHHHHhhhH
Confidence 77888887 6655566666666766666666544433321 122222211 2222445778887774
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=6.1e-15 Score=155.30 Aligned_cols=362 Identities=15% Similarity=0.065 Sum_probs=218.8
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
++..|.+-|++.++.+|..|+.+|+++. . ++.. ...++.+.++|.+.++.+|+.|+.++.++....++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--~-~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--S-SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC--C-HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC--C-HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-
Confidence 3455666678899999999999999998 3 2221 24678888999999999999999999999876654332
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccC---------------CCHhHHHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS---------------PQLSLKHA 186 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~---------------~~~~~~~~ 186 (542)
+.++.+..++.+.|+.++..|+.+|..++..+++....+. ..+|.++++|.+ .++-.+..
T Consensus 179 ---~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 179 ---MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp ---GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred ---HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 5788889999999999999999999999976655322332 567888877653 36778888
Q ss_pred HHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhh
Q psy12594 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALN------NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHL 259 (542)
Q Consensus 187 a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL 259 (542)
.+.+|+.++..+++.... ..+.|..++. +.+..+...+++++..+... +... ..++. |..++
T Consensus 254 il~~L~~l~~~~~~~~~~-----~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L 322 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSEA-----MNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFL 322 (618)
T ss_dssp HHHHHHHHTTTCHHHHHT-----THHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHH-----HHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHH
Confidence 889999988876653322 2233444332 11234555555555554321 1111 12344 55555
Q ss_pred cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHH
Q psy12594 260 TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSL 339 (542)
Q Consensus 260 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 339 (542)
.++++.++..++.+|..+....|... ....+.++.++.+++..++..|+.+|..++.... ... +++.|
T Consensus 323 ~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL 390 (618)
T 1w63_A 323 LNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKEL 390 (618)
T ss_dssp TCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHH
T ss_pred hCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHH
Confidence 55555555555555555554433221 1233445555555555555555555555544321 111 12333
Q ss_pred HHhhcCCChhhHHHHHHHHHHHhhc-------------------------------------CChHHHHHHHHcCChHHH
Q psy12594 340 QTILQCPHKEQLQVAAAWTLGQIGK-------------------------------------HSVDNVTALCEENVLSTL 382 (542)
Q Consensus 340 ~~ll~~~~~~~v~~~a~~~L~~l~~-------------------------------------~~~~~~~~l~~~~~l~~L 382 (542)
...+.+. +.+++..+..+++.++. ..|+... .+++.|
T Consensus 391 ~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~-----~~v~~L 464 (618)
T 1w63_A 391 LYFLDSC-EPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHA-----YTVQRL 464 (618)
T ss_dssp HHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHH-----HHHHHH
T ss_pred HHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHH-----HHHHHH
Confidence 3333332 23455555555555543 2222211 145567
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHhhCC----------------CchhhHHhhcC-CCCHHHHHHHHHHHHhhCCCChh
Q psy12594 383 LSKITQTCVSDNLKSKCKNALNILIPKCE----------------NPKELEQMLLG-NVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 383 ~~ll~~~~~~~~v~~~a~~aL~nl~~~~~----------------~i~~L~~lL~~-~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
+..+.+....+.+...++|.|+....... .++.|..+++. ..++.++..++.++.++....+.
T Consensus 465 ~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~ 544 (618)
T 1w63_A 465 YKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC 544 (618)
T ss_dssp HHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc
Confidence 77777532233555678999999864310 23445555541 34678899999999888777654
Q ss_pred h
Q psy12594 446 A 446 (542)
Q Consensus 446 ~ 446 (542)
.
T Consensus 545 ~ 545 (618)
T 1w63_A 545 T 545 (618)
T ss_dssp C
T ss_pred h
Confidence 3
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.65 E-value=1.2e-14 Score=160.36 Aligned_cols=414 Identities=14% Similarity=0.115 Sum_probs=276.0
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHH----HhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHH
Q psy12594 14 QRARLCFVQTMSAFADKPSTIHFL----KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALV 89 (542)
Q Consensus 14 ~~~r~~~~~~l~~l~~~~~~~~~l----~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~L 89 (542)
...|..+++++..+... ....+ .....++.|..++.+.++.+|..++.+|..++....+.....+ ....++.+
T Consensus 195 ~~vr~~al~~l~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~ 271 (861)
T 2bpt_A 195 KAVRLAALNALADSLIF--IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALT 271 (861)
T ss_dssp HHHHHHHHHHHHHHGGG--CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44677778877765431 01111 0123567777788888999999999999999932222222222 22566777
Q ss_pred HHhhccCCHHHHHHHHHHHHHHhcCChh-----------------hhhHhhcCChHHHHhhhcCC-------CHHHHHHH
Q psy12594 90 LKDLTKQNKHYKKTALHMLTCVAQQDER-----------------CAGLIEDKDLDSIISSLHDF-------DPDTRANA 145 (542)
Q Consensus 90 v~~L~~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~~~~g~v~~Lv~lL~~~-------~~~~~~~a 145 (542)
...+.+.++.++..++.++..++..... ...-.-..+++.++..+... +..+|..+
T Consensus 272 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a 351 (861)
T 2bpt_A 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 7788888999999999999988754211 11101134677788777642 35789999
Q ss_pred HHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCCCHH
Q psy12594 146 ALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALNNDEVN 224 (542)
Q Consensus 146 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~ 224 (542)
..+|..++...+. .++ ..+++.+.+.+.+.+...|+.++++++.++.+. ++.....+ ..+++.+...+.++++.
T Consensus 352 ~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 352 GACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHH
Confidence 9999988853221 111 123667777888888999999999999999754 23333333 35678899999999999
Q ss_pred HHHHHHHHHHHHhcCChhhH-HHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCC-----hHHHHHHHhcCCHHHH
Q psy12594 225 VKADAFLCLADIAKDSPSLA-STIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHN-----LRLANLVVLAGGLDGL 297 (542)
Q Consensus 225 ~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~-----~~~~~~~~~~~~i~~L 297 (542)
+|..++|+++.++....... ..-.-..+++ ++..+.++ +.++..++++|.+++... ......+ ...++.|
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L 503 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGL 503 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHH
Confidence 99999999999986422100 0011236778 88888776 899999999999987531 1111111 2456778
Q ss_pred HHhhhcCC--ccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC--------------ChhhHHHHHHHHHHH
Q psy12594 298 LRLIDCNG--GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP--------------HKEQLQVAAAWTLGQ 361 (542)
Q Consensus 298 v~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--------------~~~~v~~~a~~~L~~ 361 (542)
+..+.+.+ +.++..++.+++.++...+........ .+++.++..+... ....++..++.+|++
T Consensus 504 ~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence 88887644 678999999999998755443333333 4566666665421 124578889999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHHHhcCCCCh-HHHHHHHHHHHHHHhhCC---------CchhhHHhhcCCCCHHHHHH
Q psy12594 362 IGKHSVDNVTALCEENVLSTLLSKITQTCVSD-NLKSKCKNALNILIPKCE---------NPKELEQMLLGNVSEELLAS 431 (542)
Q Consensus 362 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~-~v~~~a~~aL~nl~~~~~---------~i~~L~~lL~~~~~~~v~~~ 431 (542)
++..-+.......+ .+++.++..+.+.. . .+|..+.+++++++...+ .++.|...++ +.+++++..
T Consensus 583 l~~~~~~~~~~~~~-~l~~~l~~~l~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~vr~~ 658 (861)
T 2bpt_A 583 VIRKSPSSVEPVAD-MLMGLFFRLLEKKD--SAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSIT 658 (861)
T ss_dssp HHHHCGGGTGGGHH-HHHHHHHHHHHSTT--GGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHHHHH
T ss_pred HHHHhhhhhHHHHH-HHHHHHHHHHccCC--CCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHHHHH
Confidence 87655432222222 46778888888763 4 799999999999875422 2466666777 777788888
Q ss_pred HHHHHHhhCCCC
Q psy12594 432 ILCAFAKILPCD 443 (542)
Q Consensus 432 ~l~~l~~ll~~~ 443 (542)
++..+..+....
T Consensus 659 a~~~l~~l~~~~ 670 (861)
T 2bpt_A 659 AVGFIADISNSL 670 (861)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 888888776543
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.64 E-value=6.8e-14 Score=154.31 Aligned_cols=385 Identities=14% Similarity=0.117 Sum_probs=262.5
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCChH-HHHHHHhcCcHHHHHHhhccC-CHHHHHHHHHHHHHHhcCCh-hh-
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVD-IRQEVLERNLVALVLKDLTKQ-NKHYKKTALHMLTCVAQQDE-RC- 118 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~-~~~~i~~~~~l~~Lv~~L~~~-~~~~~~~a~~~L~~l~~~~~-~~- 118 (542)
-+.|+..+.++++.+|..++.++..++....+. . ..+.++.|+..+.++ ++.++..++.++..++..-. +.
T Consensus 97 k~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~-----w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~ 171 (861)
T 2bpt_A 97 KTNALTALVSIEPRIANAAAQLIAAIADIELPHGA-----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ 171 (861)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC-----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh
Confidence 345677778888999999999999998322121 1 234677888888887 89999999999999986421 21
Q ss_pred -hhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594 119 -AGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFA-ERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194 (542)
Q Consensus 119 -~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl 194 (542)
..-....+++.+...+.++ ++.+|..++.++..+...-.... .......+++.+...+.++++.+|..++.+|..+
T Consensus 172 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI 251 (861)
T ss_dssp TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0111223667778888887 79999999999998753222110 0000112467777888888999999999999999
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-----------------hHHHHHhhchHH-HH
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS-----------------LASTIADGATTL-AV 256 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~~~~~~~~i~-L~ 256 (542)
+...++.....+...+++.+...+.+.+++++..++.++..++..... ...... ..+++ ++
T Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll 330 (861)
T 2bpt_A 252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLL 330 (861)
T ss_dssp HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHH
Confidence 875443333333225667788888888999999999999998865211 111111 46778 88
Q ss_pred HhhcCC-------ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh-HHHH
Q psy12594 257 EHLTYP-------HGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE-QIAE 328 (542)
Q Consensus 257 ~lL~~~-------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 328 (542)
..+... +..++..+..+|..++...++. +. ...++.+...+.+.++.++..|+.+++.++.+.. +...
T Consensus 331 ~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 406 (861)
T 2bpt_A 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRT 406 (861)
T ss_dssp HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHH
Confidence 888753 2468899999999988543211 11 2356677777888889999999999999997753 4333
Q ss_pred HHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNV-TALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 329 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
..+. .+++.|+..+.++ ++.+|..++|++++++..-.... ..-.-..+++.++..+.++ +.+|..|+|+|.+++
T Consensus 407 ~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 407 YYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLV 481 (861)
T ss_dssp HHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHH
Confidence 3343 5788889998875 56899999999999975321100 0000113567888888653 689999999999998
Q ss_pred hhCC---------C----chhhHHhhcCCCC--HHHHHHHHHHHHhhCCCC
Q psy12594 408 PKCE---------N----PKELEQMLLGNVS--EELLASILCAFAKILPCD 443 (542)
Q Consensus 408 ~~~~---------~----i~~L~~lL~~~~~--~~v~~~~l~~l~~ll~~~ 443 (542)
..++ + ++.|..++. ..| +.++..++.++..+....
T Consensus 482 ~~~~~~~~~~l~~~~~~il~~L~~~l~-~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYPALVDGLIGAAN-RIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHT-CSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHh-CcCcchHHHHHHHHHHHHHHHHc
Confidence 7542 1 344555665 433 678877777777766544
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.62 E-value=2.7e-14 Score=157.80 Aligned_cols=380 Identities=16% Similarity=0.126 Sum_probs=261.4
Q ss_pred HHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCC-hhhhhHh
Q psy12594 46 IVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ--NKHYKKTALHMLTCVAQQD-ERCAGLI 122 (542)
Q Consensus 46 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~ 122 (542)
++..+.++++.+ ..++.++..++....+. . .....++.++..+.++ ++.++..++.+|..++... ++...-.
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~--~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 169 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPV--N--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK 169 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGG--T--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcc--c--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH
Confidence 667777777777 88888888888221110 0 1346788889999888 8999999999999988542 2221112
Q ss_pred hcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 123 EDKDLDSIISSLHDF--DPDTRANAALALGGLAKDNKHFA-ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
-..+++.+...+.++ ++.+|..++.++..+....+... .......+++.+...+.+++.+++..++.+|..++...+
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence 234677888888877 68999999999999875322211 111111257778888888889999999999999998666
Q ss_pred HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh---------------------hHHHHHhhchHH-HHH
Q psy12594 200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS---------------------LASTIADGATTL-AVE 257 (542)
Q Consensus 200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---------------------~~~~~~~~~~i~-L~~ 257 (542)
+.....+...+++.+...+.+.++.++..+++.+..++..... ..... -..+++ ++.
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~ll~ 328 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQ 328 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH-HHHHhHHHHH
Confidence 5544455447888888888888999999999999988764210 01101 135677 777
Q ss_pred hhcC-------CChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh-HHHHH
Q psy12594 258 HLTY-------PHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE-QIAEQ 329 (542)
Q Consensus 258 lL~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~ 329 (542)
.+.. .+..+|..+..+|..++...++. +. ..+++.+...+.++++.++..|+++++.++.+.. +....
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~ 404 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7753 24578999999999987543321 11 2456677788888899999999999999988654 33333
Q ss_pred HHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHH--HHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNV--TALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 330 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
.. ..+++.++..+.++ +..+|..|+|++++++...+... ... -..+++.++..+.++ +.+|..|+|+|.+++
T Consensus 405 ~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 405 LV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE---PRVASNVCWAFSSLA 478 (876)
T ss_dssp HH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC---HHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 33 35888999999874 46899999999999986543311 001 124667788888763 689999999999998
Q ss_pred hhCC-------------------C----chhhHHhhcCCC---CHHHHHHHHHHHHhhCCC
Q psy12594 408 PKCE-------------------N----PKELEQMLLGNV---SEELLASILCAFAKILPC 442 (542)
Q Consensus 408 ~~~~-------------------~----i~~L~~lL~~~~---~~~v~~~~l~~l~~ll~~ 442 (542)
..++ + ++.|..++. .. +..++..++.++..+...
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~-~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD-RPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp HHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTT-SCSSCSTTHHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccccccchhhhHhHHHHHHHHHHHHh-CcCcchhhHHHHHHHHHHHHHHH
Confidence 6522 2 244445555 32 335666666666655543
No 54
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=1.1e-14 Score=148.57 Aligned_cols=375 Identities=13% Similarity=0.093 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC--ChHHHHHHHHHHHHhHccCChHHHHH----H------Hhc
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK--VPSIQHAALATLGKLMCAKHVDIRQE----V------LER 83 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~~----i------~~~ 83 (542)
.|..+.+.|.++..+ ...+.++.|..++.+. ++.+|..|+..|+++........... + ...
T Consensus 17 ~r~~Ae~~L~~~~~~-------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~ 89 (462)
T 1ibr_B 17 ELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89 (462)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHH
Confidence 466666666654431 0134556677777654 68999999999999983322111110 0 011
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCC-hHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDN-KHFA 160 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~ 160 (542)
.+-..++..|.++++.+ ..++.++..++....... .-.+.++.|+..+.++ ++.++..++.+|..++... +...
T Consensus 90 ~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (462)
T 1ibr_B 90 EVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (462)
T ss_dssp HHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence 23345677788777777 888888888875431110 1136789999999988 8999999999999998532 2211
Q ss_pred HHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 161 ERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
.... ..+++.++.+++++ ++.+|..|++++.++...-.+... .....-.++.+...+.+.+++++..++++|..++
T Consensus 167 ~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 167 QDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp GGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 1111 13578889999988 789999999999997653221110 0011113566777778889999999999999999
Q ss_pred cCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHH-----------------HHH---hcCCHHH
Q psy12594 238 KDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLAN-----------------LVV---LAGGLDG 296 (542)
Q Consensus 238 ~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~-----------------~~~---~~~~i~~ 296 (542)
...++.........+++ ++..+.+.++.++..+++.+..++........ .+. -...+|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 76543222222226788 88888888999999999999988754211000 000 1235666
Q ss_pred HHHhhhc-------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-H
Q psy12594 297 LLRLIDC-------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV-D 368 (542)
Q Consensus 297 Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~ 368 (542)
++..+.. .++.++..|..+|+.++...++. +. ..+++.+...+.+ ++..+|..|+++++.++.+.. +
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTT
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHH
Confidence 6666654 23568999999999998754421 11 2466777788876 457999999999999987643 2
Q ss_pred HHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 369 NVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 369 ~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
.....+ ..+++.++..+.++ ++.||..|+|+|+++...
T Consensus 401 ~~~~~l-~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 401 QLKPLV-IQAMPTLIELMKDP--SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp TTCTTT-TTHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHh
Confidence 111111 46889999999887 579999999999999864
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.61 E-value=2.2e-14 Score=146.33 Aligned_cols=373 Identities=13% Similarity=0.060 Sum_probs=255.3
Q ss_pred HhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccC--CHHHHHHHHHHHHHHhcCChhh------
Q psy12594 47 VPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ--NKHYKKTALHMLTCVAQQDERC------ 118 (542)
Q Consensus 47 ~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~--~~~~~~~a~~~L~~l~~~~~~~------ 118 (542)
+.-+.+.|+.+|..|-..|..+. ... ..+.+..|+.++.+. ++.+|..|+..|.++.......
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~--~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAA--VEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH--hhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33345789999999999999977 210 123556677777654 6899999999999986442100
Q ss_pred ------hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhccCC--CHhHHHHHHH
Q psy12594 119 ------AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN-KHFAERIVQCGALPPLVQILASP--QLSLKHAAAF 189 (542)
Q Consensus 119 ------~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~ 189 (542)
..-....+-..++..+.++++.+ ..++.+++.++... +. . .-.++++.|++.+.++ ++.++..++.
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~---~w~~ll~~L~~~l~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N---QWPELIPQLVANVTNPNSTEHMKESTLE 152 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T---CCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c---ccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 00011123456777888887777 88889999988532 11 0 0125688999999988 8999999999
Q ss_pred HHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHH-HHHhhchHH-HHHhhcCCCh
Q psy12594 190 ALDGIVKHS-PELAESASDCDVIPLLIKALNND--EVNVKADAFLCLADIAKDSPSLAS-TIADGATTL-AVEHLTYPHG 264 (542)
Q Consensus 190 ~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~-L~~lL~~~~~ 264 (542)
+|+.++... ++...... ..+++.+...+.+. ++.+|..+++++.++...-.+... ......+++ +...+.+.++
T Consensus 153 ~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 999999743 22211111 23568888888877 799999999999998654221111 111122567 7777788899
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChH-------------------
Q psy12594 265 LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ------------------- 325 (542)
Q Consensus 265 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~------------------- 325 (542)
.++..++++|..++...+..........+++.++..+++.++.++..++..+..++.....
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 9999999999999876544321111115677777888888889999999998888753210
Q ss_pred --HHHHHHhhCchHHHHHhhcCC------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHH
Q psy12594 326 --IAEQIIELQGVGSLQTILQCP------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKS 397 (542)
Q Consensus 326 --~~~~~~~~~~l~~L~~ll~~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~ 397 (542)
...... ..+++.++..+... .+..+|..|+.+|..++...++. ++ ..+++.+...+.++ +..+|.
T Consensus 312 ~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~--~~~~r~ 384 (462)
T 1ibr_B 312 KFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNP--DWRYRD 384 (462)
T ss_dssp CCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCS--SHHHHH
T ss_pred HHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC--ChHHHH
Confidence 111111 24667777777542 12468999999999987654421 11 23567777788766 569999
Q ss_pred HHHHHHHHHHhhCC----------CchhhHHhhcCCCCHHHHHHHHHHHHhhCCC
Q psy12594 398 KCKNALNILIPKCE----------NPKELEQMLLGNVSEELLASILCAFAKILPC 442 (542)
Q Consensus 398 ~a~~aL~nl~~~~~----------~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~ 442 (542)
.|+++|+.+...+. .++.+..+|. +.++.++..++++|.++...
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence 99999999975432 3567888888 88899999999999988543
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.59 E-value=4.1e-13 Score=148.34 Aligned_cols=404 Identities=13% Similarity=0.084 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcC--CChHHHHHHHHHHHHhHccCChH----HHHHHH------hc
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD--KVPSIQHAALATLGKLMCAKHVD----IRQEVL------ER 83 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~----~~~~i~------~~ 83 (542)
.|+.+.+.|.++..+ ...+.++.|+..+.+ .++.+|..|+..|++.....++. ....+. ..
T Consensus 17 ~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~ 89 (876)
T 1qgr_A 17 ELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89 (876)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHH
Confidence 466677766664431 114667778888866 46899999999999976222111 111111 11
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC--CHHHHHHHHHHHHHhhcCC-hHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF--DPDTRANAALALGGLAKDN-KHFA 160 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~ 160 (542)
.+-+.+++.|.++++.+ ..++.++..++..... .-.-..+++.++..+.++ ++.+|..++.+|..++... ++..
T Consensus 90 ~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 166 (876)
T 1qgr_A 90 EVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166 (876)
T ss_dssp HHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhH
Confidence 12234777787777777 8888888888754211 001135788899999988 8999999999999998532 2210
Q ss_pred HHHHHcCChHHHHHhccCC--CHhHHHHHHHHHHHHhcCCHHHHH-HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 161 ERIVQCGALPPLVQILASP--QLSLKHAAAFALDGIVKHSPELAE-SASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
.. .-..+++.+.+.+.++ +..+|..++.+|.+++..-..... ......+++.+...+.+.+.+++..++++|..++
T Consensus 167 ~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 167 QD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp GG-GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 10 0123467788888877 688999999999998864322110 1111124677777888889999999999999999
Q ss_pred cCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH---------------------HHHHHHhcCCHH
Q psy12594 238 KDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR---------------------LANLVVLAGGLD 295 (542)
Q Consensus 238 ~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~---------------------~~~~~~~~~~i~ 295 (542)
...++.........+++ ++..+.+.++.++..+++.+..++..... ..+... ...++
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~ 324 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVP 324 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhH
Confidence 86654433333347788 88888888999999999999988754211 000000 23466
Q ss_pred HHHHhhhc-------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCCh-
Q psy12594 296 GLLRLIDC-------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSV- 367 (542)
Q Consensus 296 ~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~- 367 (542)
.++..+.. .++.++..|..+++.++...++. ++ ..+++.+...+.+ ++..+|..|+++++.++.+..
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~ 399 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEP 399 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccC-CChHHHHHHHHHHHHHHcCCCH
Confidence 67777753 35678999999999887643321 11 2456667777776 457899999999999987654
Q ss_pred HHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC-------CC----chhhHHhhcCCCCHHHHHHHHHHH
Q psy12594 368 DNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC-------EN----PKELEQMLLGNVSEELLASILCAF 436 (542)
Q Consensus 368 ~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~-------~~----i~~L~~lL~~~~~~~v~~~~l~~l 436 (542)
+...... ..+++.++..+.++ ++.||..|+|+|+++.... .. ++.|...+. + ++.+...+++++
T Consensus 400 ~~~~~~~-~~~l~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~-~~~v~~~a~~al 474 (876)
T 1qgr_A 400 SQLKPLV-IQAMPTLIELMKDP--SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-A-EPRVASNVCWAF 474 (876)
T ss_dssp HHHHHHH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-S-CHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHH
Confidence 3333332 34889999999876 5799999999999998652 22 355566666 5 478888888888
Q ss_pred HhhCC
Q psy12594 437 AKILP 441 (542)
Q Consensus 437 ~~ll~ 441 (542)
.++..
T Consensus 475 ~~l~~ 479 (876)
T 1qgr_A 475 SSLAE 479 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.57 E-value=1.1e-13 Score=125.21 Aligned_cols=188 Identities=26% Similarity=0.333 Sum_probs=161.1
Q ss_pred hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
+.+.++.|+.+|+++++.+|..|+..|..+. ....++.|+..|.++++.++..++.+|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 3567899999999999999999999999988 34678999999999999999999999999863
Q ss_pred hhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 119 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
.+.++.|+.+|+++++.+|..++++|+.+.. ...++.|+.++.++++.++..++++|+++..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 2478999999999999999999999999864 1358899999999999999999999999864
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
...++.|..++.++++.++..++++|..+.. ...++ |..++.++++.++..|..+|.++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999843 25677 88999999999999999999988
Q ss_pred hcCC
Q psy12594 278 CKHN 281 (542)
Q Consensus 278 ~~~~ 281 (542)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 7544
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.54 E-value=2.3e-13 Score=122.08 Aligned_cols=184 Identities=26% Similarity=0.331 Sum_probs=160.3
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
.+..+.++.+|+++++.+|..|+..|..+. ..+.++.|++.|.++++.++..++.+|+.+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG------------DERAVEPLIKALKDEDAWVRRAAADALGQIGDE----- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence 466788999999999999999999999988 346789999999999999999999999988532
Q ss_pred hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCH
Q psy12594 120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~ 199 (542)
..++.|+.+|.++++.+|..|+++|+.+.. + ..++.|+.++.++++.+|..|+++|+++..
T Consensus 76 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 -----RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 478999999999999999999999999854 1 358889999999999999999999999864
Q ss_pred HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 200 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
...++.|..++.++++.+|..++++|+.+.. ...++ |..++.++++.++..+..+|..+.
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999832 24677 888999999999999999998764
No 59
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.52 E-value=1.3e-11 Score=129.42 Aligned_cols=401 Identities=12% Similarity=0.087 Sum_probs=272.0
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
.+.+..++++.+++...+..+..++..++ .. ++.... .++.+.+-|.++++.++..|+.+++++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~--~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLV--NSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSC--CCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHc--cCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH
Confidence 45677788999999999999999999999 55 443222 35567777889999999999999999853 3333
Q ss_pred hHhhcCChHHHHhhh--cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594 120 GLIEDKDLDSIISSL--HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~ 197 (542)
. .+++.+.+++ .+.++.+|..|+.++.++...+|+... ..+.++.+.++|.+.++.++..|+.+|..++..
T Consensus 145 ~----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 145 E----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp H----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 3 3567888899 888999999999999999976655322 147899999999999999999999999999987
Q ss_pred CHHHHHHhhhCCChHHHHHhhcCC-------------CHHHHHHHHHHHHHHhcC-ChhhHHHHHhhchHH-HHHhh---
Q psy12594 198 SPELAESASDCDVIPLLIKALNND-------------EVNVKADAFLCLADIAKD-SPSLASTIADGATTL-AVEHL--- 259 (542)
Q Consensus 198 ~~~~~~~~~~~~~i~~L~~ll~~~-------------~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~-L~~lL--- 259 (542)
+++.....+ ...+..|.+++... ++-.+...+..|..++.. +++..+.+. ..++ ++..+
T Consensus 218 ~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~ 294 (621)
T 2vgl_A 218 NPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP 294 (621)
T ss_dssp CHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred ChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence 665321111 11223333443321 567888888888888764 333443332 2444 44332
Q ss_pred ------cCCC--hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHH
Q psy12594 260 ------TYPH--GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQII 331 (542)
Q Consensus 260 ------~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 331 (542)
++.+ ..|...++.++..+. ..++... .++..|..++.+.++.++..|+..|..++...+.. ..+
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~~- 366 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EAV- 366 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HHH-
T ss_pred cccccccccchHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HHH-
Confidence 2223 378888999998886 3333222 35668889999899999999999999998765421 122
Q ss_pred hhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE 411 (542)
Q Consensus 332 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~ 411 (542)
......++..+...++..++..++.+|..++ ++.+...+ +..|...+.+. +.+++.+++.+++.+..+..
T Consensus 367 -~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~--~~~Nv~~I-----v~eL~~yl~~~--d~~~~~~~v~~I~~la~k~~ 436 (621)
T 2vgl_A 367 -KTHIETVINALKTERDVSVRQRAVDLLYAMC--DRSNAQQI-----VAEMLSYLETA--DYSIREEIVLKVAILAEKYA 436 (621)
T ss_dssp -HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC--CHHHHHHH-----HHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc--ChhhHHHH-----HHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcC
Confidence 2456777888872356789999999999995 44444443 45566677665 56999999999999976521
Q ss_pred -----CchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhhhHHHHhcchHHhhhcCCC-CcHHHHHHHHhccCc
Q psy12594 412 -----NPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPT-PEIAPHLKTINACFP 480 (542)
Q Consensus 412 -----~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~~~~~~~g~~~~l~~l~~~-~~~~~a~~~l~~~~~ 480 (542)
++..|.+++. .....+...+...+..++...+..++..... .++.+.+-... .-++.+.|+|+.|.+
T Consensus 437 ~~~~~~v~~Ll~ll~-~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~-l~~~l~~~~~~~~li~~~~wilGEy~~ 509 (621)
T 2vgl_A 437 VDYTWYVDTILNLIR-IAGDYVSEEVWYRVIQIVINRDDVQGYAAKT-VFEALQAPACHENLVKVGGYILGEFGN 509 (621)
T ss_dssp SSTHHHHHHHHHHHH-HHGGGSCSHHHHHHHHHHGGGCSCHHHHHHH-HHHHHTSSSCCHHHHHHHHHHHHHHTH
T ss_pred CcHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHhCChhHHHHHHHH-HHHHHcCccchHHHHHHHHHHhcchHH
Confidence 3677888887 5444455556666666655555544443321 11122211111 123456789988854
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.51 E-value=5.6e-13 Score=120.51 Aligned_cols=189 Identities=23% Similarity=0.294 Sum_probs=159.2
Q ss_pred hcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594 82 ERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161 (542)
Q Consensus 82 ~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (542)
..+.++.|+..|.++++.+|..++..|..+.. .++++.|++++.++++.+|..++++|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 34578999999999999999999999998763 2478999999999999999999999998863
Q ss_pred HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+.++.|+.+++++++.+|..++++|+++.. ...++.|..++.++++.++..++++|+++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2358899999999999999999999999865 3567899999999999999999999999843
Q ss_pred hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 242 SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 242 ~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
...++ |..++.++++.++..++++|..+.. ...++.|..++.++++.++..|..+|+++.
T Consensus 142 --------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 14677 9999999999999999999999853 345677889999999999999999999886
Q ss_pred cCCh
Q psy12594 321 AQSE 324 (542)
Q Consensus 321 ~~~~ 324 (542)
....
T Consensus 203 ~~~~ 206 (211)
T 3ltm_A 203 SFNH 206 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.50 E-value=1.7e-12 Score=148.35 Aligned_cols=412 Identities=11% Similarity=0.090 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH----HHHHHhcCcHHHHH
Q psy12594 15 RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI----RQEVLERNLVALVL 90 (542)
Q Consensus 15 ~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~----~~~i~~~~~l~~Lv 90 (542)
+.|..++.+|..++..-.. ..+ ..+++.|+..+.++++.+|..|+.+|..++....+.. ...-.....+|.|+
T Consensus 63 ~vR~~A~~~L~~l~~~~~~-~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~ 139 (1230)
T 1u6g_C 63 EVQNLAVKCLGPLVSKVKE-YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLT 139 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCH-HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHH
Confidence 4566777777777653211 111 3467778888888889999999999999983333320 00111335788999
Q ss_pred Hhhc-cCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q psy12594 91 KDLT-KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGAL 169 (542)
Q Consensus 91 ~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i 169 (542)
..+. ++++.++..++.+|..++...+....-.....++.++..+.++++.+|..|+.+|..++...+. .+ -..++
T Consensus 140 ~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l 215 (1230)
T 1u6g_C 140 SAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLI 215 (1230)
T ss_dssp HHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHH
T ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHH
Confidence 9998 5889999999999999884321111111134678888999999999999999999999864432 11 12347
Q ss_pred HHHHHhccCCC-HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q psy12594 170 PPLVQILASPQ-LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA 248 (542)
Q Consensus 170 ~~L~~ll~~~~-~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 248 (542)
+.++..+.+.+ ..++..++.+++.++...+....... ..+++.+...+.+.++++|+.+++++..++...++......
T Consensus 216 ~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l 294 (1230)
T 1u6g_C 216 EHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV 294 (1230)
T ss_dssp HHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH
Confidence 77887776543 46778888999988874433221112 46789999999988999999999999999876442211111
Q ss_pred hhchHH-HHHhhcCC-------------------------------------ChhHHHHHHHHHHHHhcCChHHHHHHHh
Q psy12594 249 DGATTL-AVEHLTYP-------------------------------------HGLVQKNAATLLRDMCKHNLRLANLVVL 290 (542)
Q Consensus 249 ~~~~i~-L~~lL~~~-------------------------------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 290 (542)
..+++ ++..+..+ ...+|..++.++..++...++......
T Consensus 295 -~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~- 372 (1230)
T 1u6g_C 295 -STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY- 372 (1230)
T ss_dssp -HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-
T ss_pred -HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-
Confidence 34556 65555310 124688899999998875543222222
Q ss_pred cCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC-------------------hHHHHHHHhhCchHHHHHhhcCCChhhH
Q psy12594 291 AGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS-------------------EQIAEQIIELQGVGSLQTILQCPHKEQL 351 (542)
Q Consensus 291 ~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~~~~~~~~l~~L~~ll~~~~~~~v 351 (542)
...++.++..+.+.++.++..++.++..+.... ......++ ..+++.+...+.++ ++.+
T Consensus 373 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~-~~~v 450 (1230)
T 1u6g_C 373 KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEK-SVKT 450 (1230)
T ss_dssp TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCS-CHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccC-CHHH
Confidence 467888888888888899999999888776421 01111122 24666677778874 4588
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC----------CCchhhHHhhc
Q psy12594 352 QVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC----------ENPKELEQMLL 421 (542)
Q Consensus 352 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~----------~~i~~L~~lL~ 421 (542)
|..++.+++.++...+...... -..+++.++..|.++.+..+++..++.++..++... ..++.|...+.
T Consensus 451 r~~~~~~L~~l~~~~~~~l~~~-l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~ 529 (1230)
T 1u6g_C 451 RQCCFNMLTELVNVLPGALTQH-IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVG 529 (1230)
T ss_dssp HHHHHHHHHHHHHHSTTTTGGG-HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHchhhhHHH-HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHc
Confidence 9999999998876533221111 124678888999887544589999999999886432 23566667777
Q ss_pred CCCCHHHHHHHHHHHHhhC
Q psy12594 422 GNVSEELLASILCAFAKIL 440 (542)
Q Consensus 422 ~~~~~~v~~~~l~~l~~ll 440 (542)
+.+..++..+++++..++
T Consensus 530 -d~~~~v~~~al~~l~~l~ 547 (1230)
T 1u6g_C 530 -DPFYKITSEALLVTQQLV 547 (1230)
T ss_dssp -CSSHHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHH
Confidence 777777777777766554
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.50 E-value=8e-13 Score=118.45 Aligned_cols=183 Identities=23% Similarity=0.309 Sum_probs=158.0
Q ss_pred CcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12594 84 NLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERI 163 (542)
Q Consensus 84 ~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i 163 (542)
+..+.+++.|.++++.+|..++..|..+.. .+.++.|+++|.++++.+|..++++|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~------ 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E------ 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H------
Confidence 467889999999999999999999998763 2478999999999999999999999998853 1
Q ss_pred HHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q psy12594 164 VQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL 243 (542)
Q Consensus 164 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 243 (542)
..++.|+.++.++++.+|..|+++|+++.. ...++.|..++.++++.+|..++++|+.+..
T Consensus 76 ---~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 136 (201)
T 3ltj_A 76 ---RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 136 (201)
T ss_dssp ---GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 358899999999999999999999999865 3467889999999999999999999999853
Q ss_pred HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
...++ |..++.++++.++..++++|..+.. ...++.|..++.++++.++..|..+|+.+.
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 25678 9999999999999999999999842 235677888999999999999999998763
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.48 E-value=6.1e-13 Score=152.13 Aligned_cols=384 Identities=11% Similarity=0.109 Sum_probs=257.5
Q ss_pred hHHHHhhhcCCChHHHHHHHHHHHHhHccCChHH-HHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDI-RQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 43 i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~-~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
++.|+.-+.+.|+.+|..|...|.+.. ..+.. ...-.....++.+++.|.++++.+|..|+.+|..++...++. .+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l--~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~ 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTEL--QKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QV 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHT--SSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHH--cccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HH
Confidence 556666678999999999999888876 32100 000001235678888898999999999999999998654331 11
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHH------HHHHHHcCChHHHHHhcc-CCCHhHHHHHHHHHHHH
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF------AERIVQCGALPPLVQILA-SPQLSLKHAAAFALDGI 194 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~------~~~i~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~nl 194 (542)
..+++.++..+.++++.+|..++.+|..++...... .... -..++|.|+..+. ++++.++..|+.+|..+
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 135678888888888999999999999988433221 1111 1245899999998 47899999999999999
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHH
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAAT 272 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~ 272 (542)
+...+....... ...++.+...+.++++.+|..++.++..++...++. + -..+++ ++..|... +..++..++.
T Consensus 162 ~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 162 LSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence 853221111111 234577777888889999999999999999765421 1 234677 77777655 4567888899
Q ss_pred HHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC------
Q psy12594 273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP------ 346 (542)
Q Consensus 273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------ 346 (542)
++..++...+..... .-...++.++..+.+.++.+|..++.+++.++...++...... ..+++.++..+...
T Consensus 237 ~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~ 314 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYD 314 (1230)
T ss_dssp HHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC------
T ss_pred HHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCc
Confidence 999887654332110 1136788999999988999999999999998875443211121 13444444443210
Q ss_pred ------------------------------ChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHH
Q psy12594 347 ------------------------------HKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLK 396 (542)
Q Consensus 347 ------------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~ 396 (542)
....+|..|+.++..++...++....++ ..+++.++..+.+. ++++|
T Consensus 315 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~--~~~Vr 391 (1230)
T 1u6g_C 315 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER--EENVK 391 (1230)
T ss_dssp ------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS--SSHHH
T ss_pred ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC--chHHH
Confidence 0134688999999998765544333333 35778888877665 46899
Q ss_pred HHHHHHHHHHHhhCC------------------------Cch----hhHHhhcCCCCHHHHHHHHHHHHhhCCCC
Q psy12594 397 SKCKNALNILIPKCE------------------------NPK----ELEQMLLGNVSEELLASILCAFAKILPCD 443 (542)
Q Consensus 397 ~~a~~aL~nl~~~~~------------------------~i~----~L~~lL~~~~~~~v~~~~l~~l~~ll~~~ 443 (542)
..+..++..++...+ .++ .+...++ +.++.++..++.++..++...
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHc
Confidence 999999888865321 233 3444477 788888888888887776543
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.47 E-value=7e-12 Score=131.51 Aligned_cols=390 Identities=13% Similarity=0.071 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhh--cCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhh
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLL--ADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDL 93 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L 93 (542)
.|..++++++++.. ++.. ...+|.+.+++ .+.+|.+|..|+.++.++.. .+++... ..++++.+.++|
T Consensus 127 ir~lALr~L~~i~~-~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~-~~p~~~~---~~~~~~~l~~lL 196 (621)
T 2vgl_A 127 FMGLALHCIANVGS-REMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR-TSPDLVP---MGDWTSRVVHLL 196 (621)
T ss_dssp HHHHHHHHHHHHCC-HHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HCGGGCC---CCSCHHHHHHHT
T ss_pred HHHHHHHHhhccCC-HHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH-hChhhcC---chhHHHHHHHHh
Confidence 36678888888854 2222 25667888888 88899999999999999992 1233311 247899999999
Q ss_pred ccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCC-------------CHHHHHHHHHHHHHhhcC-ChHH
Q psy12594 94 TKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDF-------------DPDTRANAALALGGLAKD-NKHF 159 (542)
Q Consensus 94 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~-------------~~~~~~~a~~~L~~l~~~-~~~~ 159 (542)
.+.++.++..|+.++..++..++..-...-...+..|-+++... ++..+...+..|..++.. ++..
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~ 276 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 276 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH
Confidence 99999999999999999987665432201111223333333221 688998888888888753 4555
Q ss_pred HHHHHHcCChHHHHHhcc---------CCC--HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHH
Q psy12594 160 AERIVQCGALPPLVQILA---------SPQ--LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKAD 228 (542)
Q Consensus 160 ~~~i~~~g~i~~L~~ll~---------~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 228 (542)
++.+.+ .++.++..+. +.+ ..+...|+.++..+.. .++.... ++..|..++.+++++++..
T Consensus 277 ~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~-----~~~~L~~~L~~~~~niry~ 348 (621)
T 2vgl_A 277 RGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVR-----ACNQLGQFLQHRETNLRYL 348 (621)
T ss_dssp HHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHH-----HHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHH-----HHHHHHHHhcCCCcchHHH
Confidence 555443 2344443321 112 3788889999988864 4544443 3478889998899999999
Q ss_pred HHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc
Q psy12594 229 AFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG 306 (542)
Q Consensus 229 a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~ 306 (542)
++..|..++...+. ...+ ..... ++.+|. ++|..++..++.+|..++. +.+.+ .++..|..++...+.
T Consensus 349 aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~-----~Iv~eL~~yl~~~d~ 418 (621)
T 2vgl_A 349 ALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQ-----QIVAEMLSYLETADY 418 (621)
T ss_dssp HHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHH-----HHHHHHHHHHHhcCH
Confidence 99999999987642 2222 23456 888888 8899999999999999984 33333 345578888888899
Q ss_pred cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHH
Q psy12594 307 YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKI 386 (542)
Q Consensus 307 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll 386 (542)
..+..++..++.++...+... ...+..|++++....+ .+..++...+..+....++.+... +..++..+
T Consensus 419 ~~~~~~v~~I~~la~k~~~~~-----~~~v~~Ll~ll~~~~~-~v~~ev~~~l~~ii~~~~~~~~~~-----~~~l~~~l 487 (621)
T 2vgl_A 419 SIREEIVLKVAILAEKYAVDY-----TWYVDTILNLIRIAGD-YVSEEVWYRVIQIVINRDDVQGYA-----AKTVFEAL 487 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCSST-----HHHHHHHHHHHHHHGG-GSCSHHHHHHHHHHGGGCSCHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHHHhhcc-cchHHHHHHHHHHHhCChhHHHHH-----HHHHHHHH
Confidence 999999999998874211111 1346677777776433 455666667777766655544433 45678888
Q ss_pred hcCCCChHHHHHHHHHHHHHHhh---CCC------chhhHHhhcCCCCHHHHHHHHHHHHhhCCCChh
Q psy12594 387 TQTCVSDNLKSKCKNALNILIPK---CEN------PKELEQMLLGNVSEELLASILCAFAKILPCDPV 445 (542)
Q Consensus 387 ~~~~~~~~v~~~a~~aL~nl~~~---~~~------i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~ 445 (542)
.++.....+-..++|.|+..... .+. +..+..-+. ..++.+...++.++.++....+.
T Consensus 488 ~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~-~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 488 QAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH-LCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp TSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCGG
T ss_pred cCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHChH
Confidence 87765556777888999998543 221 223333334 66788999999999888655544
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.20 E-value=2.4e-10 Score=121.45 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=154.6
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH-HHhccCCCHhHHHHHHHHHHHHhcC-CHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL-VQILASPQLSLKHAAAFALDGIVKH-SPELAE 203 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~ll~~~~~~~~~~a~~~L~nl~~~-~~~~~~ 203 (542)
.+.++++.|+++++..|..|+++|.+++. ++..++.+...++|..+ ..+|.+++.++|..|+++|+||+.+ +++.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34456678999999999999999999997 78889999999988765 5578889999999999999999975 578889
Q ss_pred HhhhCCChHHHHHhhcCC--------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC
Q psy12594 204 SASDCDVIPLLIKALNND--------------E-------VNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY 261 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~~--------------~-------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~ 261 (542)
.++..|+++.|..++... . .++...++.+|++||..+.+....+...+.++ |+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 999999999999887521 1 23556788999999998877777888888899 8888754
Q ss_pred C---ChhHHHHHHHHHHHHhcCChHHHHHHHhcCCH---HHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 262 P---HGLVQKNAATLLRDMCKHNLRLANLVVLAGGL---DGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 262 ~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i---~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
. ..+++..++.+|..++..++...+.+.+.+.. ..+.. +...+...+..++.+|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCCcHHHHHHHHHHHhHh
Confidence 3 47899999999999999999888888776542 23333 33344455777888888864
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=2.5e-10 Score=121.31 Aligned_cols=193 Identities=14% Similarity=0.114 Sum_probs=152.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-H-HHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHH
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-A-VEHLTYPHGLVQKNAATLLRDMCKH-NLRLANL 287 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L-~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~ 287 (542)
+.++++.|++++++.|..|+++|++|+.+ +..+..+...+++. + ..+|.+++.+|+..|+++|+||+.+ .++....
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 44466778999999999999999999975 56888888877776 5 5678888999999999999999976 4777777
Q ss_pred HHhcCCHHHHHHhhhcCCc---------------------cchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCC
Q psy12594 288 VVLAGGLDGLLRLIDCNGG---------------------YNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~---------------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 346 (542)
+.+.++++.|..+++.... .+...++.+|.+|+.++.+....+...+.++.|+..+.+.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 8899999999998864211 1334577889999998888888888889999999888543
Q ss_pred C--hhhHHHHHHHHHHHhhcCChHHHHHHHHcCCh---HHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 347 H--KEQLQVAAAWTLGQIGKHSVDNVTALCEENVL---STLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 347 ~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
. ...++..|+.+|..++..+++..+.+.+.+.. ..+..+.++. ...+..+++.|.|+.
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~---~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT---DPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS---CTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC---cHHHHHHHHHHHhHh
Confidence 2 25799999999999999999999988887643 3333333332 356888999999984
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.14 E-value=2.5e-08 Score=82.63 Aligned_cols=213 Identities=15% Similarity=0.189 Sum_probs=172.8
Q ss_pred cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhH
Q psy12594 166 CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLA 244 (542)
Q Consensus 166 ~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~ 244 (542)
..++..++.+|.++-..++.+|+..+.+++..-++....++ ..|+.+++ +...++......+++.++...|+..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 34588899999988899999999999999998887776655 56777765 5677888888999999999887655
Q ss_pred HHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCC
Q psy12594 245 STIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQS 323 (542)
Q Consensus 245 ~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 323 (542)
. +++| +..-+.-.++.++.+...+|..+.+.+|.....+ +.-+..++.+++..-+..|+..++.+..+.
T Consensus 106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 5 6788 8888888899999999999999999998876544 457888999988888889999998887766
Q ss_pred hHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 324 EQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 324 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
..+.. -.+|.|..+|.+. +.-+|..|..+|++++..++..+..+. .-+.-+.+. ++.+++....+|
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~--S~lv~~~V~egL 241 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT--SSLVNKTVKEGI 241 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS--CHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc--HHHHHHHHHHHH
Confidence 55443 6789999999985 468999999999999999998655443 235556655 678999999888
Q ss_pred HHHH
Q psy12594 404 NILI 407 (542)
Q Consensus 404 ~nl~ 407 (542)
+.++
T Consensus 242 ~rl~ 245 (253)
T 2db0_A 242 SRLL 245 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.07 E-value=9.3e-08 Score=101.56 Aligned_cols=307 Identities=14% Similarity=0.093 Sum_probs=211.0
Q ss_pred CchHHHHhhhc---CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCC--------HHHHHHHHHHHH
Q psy12594 41 NVVDLIVPLLA---DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN--------KHYKKTALHMLT 109 (542)
Q Consensus 41 g~i~~L~~lL~---s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~--------~~~~~~a~~~L~ 109 (542)
+++..|.+.|. ++++.++..|+.+|+-+......+ .+..|...|.+.+ +.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~---------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD---------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH---------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 46777888886 678899999999999998322221 3456666666544 678888888888
Q ss_pred HHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh--cCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHH
Q psy12594 110 CVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA--KDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHA 186 (542)
Q Consensus 110 ~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~--~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~ 186 (542)
-...++. +..+++.|..++.+.+..++..|+.+|+.+- ..+... +..|++.+ .+.+..+++.
T Consensus 463 la~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---------i~~LL~~~~e~~~e~vrR~ 527 (963)
T 4ady_A 463 LAAMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---------IHDMFTYSQETQHGNITRG 527 (963)
T ss_dssp HHSTTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHHHHHHCSCHHHHHH
T ss_pred HHhcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---------HHHHHHHHhccCcHHHHHH
Confidence 8654431 1135678888888888778888888888763 334333 34444443 3456889999
Q ss_pred HHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCC
Q psy12594 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPH 263 (542)
Q Consensus 187 a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~ 263 (542)
++.+|+.+..+.++ .++.+++.|. +.++-+|..++.+++.-+....+. ..++ |++.+. +.+
T Consensus 528 aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~ 591 (963)
T 4ady_A 528 LAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSN 591 (963)
T ss_dssp HHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSC
T ss_pred HHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCc
Confidence 99999988876554 3455666665 568889999888887554443221 3455 665554 447
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHh-hhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHh
Q psy12594 264 GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL-IDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI 342 (542)
Q Consensus 264 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 342 (542)
..+|+.|+.+|+.+....+ ..+++++.. .++.++.+|..+..+||.++.+++.. .++..|..+
T Consensus 592 d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L 655 (963)
T 4ady_A 592 DDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHH
Confidence 8999999999999876654 345566664 45688889999999999998876642 356666777
Q ss_pred hcCCChhhHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy12594 343 LQCPHKEQLQVAAAWTLGQIGKHSVDNVT-ALCEENVLSTLLSKITQTCVSDNLKSKCKNALNIL 406 (542)
Q Consensus 343 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl 406 (542)
..+ ++..|+..|+.+|+.+..+..+... .+ ...+..|...+.+...+...+..+..|.+-+
T Consensus 656 ~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 656 TKD-PVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HTC-SSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred ccC-CCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 766 5679999999999999887554300 00 0123445666654333467888888877765
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.06 E-value=4.9e-09 Score=100.23 Aligned_cols=273 Identities=14% Similarity=0.070 Sum_probs=168.3
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIV 164 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~ 164 (542)
++..+++++.+.+..+|+..-.++..++...++.- =++..|.+-++++++.+|..|+++|+++.. ++..+.+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~l- 140 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQAI- 140 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHHH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHHH-
Confidence 56678899999999999999999988886643322 257889999999999999999999999975 2333332
Q ss_pred HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q psy12594 165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA 244 (542)
Q Consensus 165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 244 (542)
.+.+.+.+.+.++.+|..|+.+..++....|+..+ ++++.+..++.+.++-++.+|+.+|..+...+.
T Consensus 141 ----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 141 ----ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp ----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred ----HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 56788889999999999999999999998887543 578999999999999999999999999988653
Q ss_pred HHHHhhchHH-HHHhhcCC---ChhHHHHHHHHHHHHhcCC-hHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594 245 STIADGATTL-AVEHLTYP---HGLVQKNAATLLRDMCKHN-LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM 319 (542)
Q Consensus 245 ~~~~~~~~i~-L~~lL~~~---~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 319 (542)
..+. ++..+... ++..+...+..+..++..+ +.. ....++.+..+|++.++.+...|+++|..+
T Consensus 209 ------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 209 ------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNL 277 (355)
T ss_dssp ------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC-
T ss_pred ------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence 1334 55555443 5666666666555555444 222 245677888999999999999999999988
Q ss_pred hcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHH
Q psy12594 320 SAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKC 399 (542)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a 399 (542)
...+... . ..++..|..++.+ +++.+|..|++.|..+...+|...+. .-..+.+++.+++ ..+..-|
T Consensus 278 ~~~~~~~----~-~~a~~~L~~fLss-~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n--~sI~t~A 344 (355)
T 3tjz_B 278 PGCSAKE----L-APAVSVLQLFCSS-PKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDAN--RSIATLA 344 (355)
T ss_dssp ---------------CCCTHHHHHHS-SSSSSHHHHHHCC----------------------------------------
T ss_pred cCCCHHH----H-HHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCc--HhHHHHH
Confidence 5522221 1 2456667777776 45689999999999998777764321 2244456666653 3444444
Q ss_pred HH
Q psy12594 400 KN 401 (542)
Q Consensus 400 ~~ 401 (542)
..
T Consensus 345 it 346 (355)
T 3tjz_B 345 IT 346 (355)
T ss_dssp --
T ss_pred HH
Confidence 33
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.05 E-value=1.4e-07 Score=78.27 Aligned_cols=214 Identities=18% Similarity=0.223 Sum_probs=173.3
Q ss_pred hCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCh
Q psy12594 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDE 116 (542)
Q Consensus 39 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~ 116 (542)
+..++..++.+|.++--.+|..|+..+..++ .. ++....+ +..|+.+++ ++.-......+..++.++.-.|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~--~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIA--KTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHH--HHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 4567888899998888899999999999999 66 6665443 446777766 4667777788889999997777
Q ss_pred hhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhc
Q psy12594 117 RCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK 196 (542)
Q Consensus 117 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~ 196 (542)
+.-. +.+|.+..-..-+++.++.....+|..++..+|.....+ +.-+..++.+++..-+..|+..++.+..
T Consensus 103 e~v~----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 ELVK----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHH----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHHH----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 6655 457888888888899999999999999999898865554 5567888999998888899999998888
Q ss_pred CCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHH
Q psy12594 197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLR 275 (542)
Q Consensus 197 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~ 275 (542)
..++.. ...+|.|..+|.+.+.-+|..++.+|.+++..++..+. ++. .+.-+.+.++.+...+-..|.
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666544 45669999999999999999999999999999887654 344 667788888899888888888
Q ss_pred HHhc
Q psy12594 276 DMCK 279 (542)
Q Consensus 276 ~L~~ 279 (542)
.+..
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.02 E-value=1.1e-08 Score=97.78 Aligned_cols=298 Identities=12% Similarity=0.068 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc
Q psy12594 17 RLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK 95 (542)
Q Consensus 17 r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~ 95 (542)
|....+.|+-+...+..-+ ..-....+..++++.++|...+......+..++ .. ++.. =....+.+-+.+
T Consensus 45 ~~~l~kll~l~~~G~~f~~-~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~--~~~~e~i------Lv~Nsl~kDl~~ 115 (355)
T 3tjz_B 45 AHILTKILYLINQGEHLGT-TEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMS--CIAEDVI------IVTSSLTKDMTG 115 (355)
T ss_dssp HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHT--TTSSCGG------GGHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCCch-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCHHHHH------HHHHHHHhhcCC
Confidence 3344455555544432211 111233455678999999999999999998888 44 2221 256677788889
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q psy12594 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI 175 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 175 (542)
+++.+|..|+++|+++...+ ... .+.+.+.+.+.+.+|.+|..|+.+..++....|+..+ ++++.+-++
T Consensus 116 ~N~~iR~lALRtL~~I~~~~--m~~----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~l 184 (355)
T 3tjz_B 116 KEDSYRGPAVRALCQITDST--MLQ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEA 184 (355)
T ss_dssp SCHHHHHHHHHHHHHHCCTT--THH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHH
T ss_pred CcHhHHHHHHHHHhcCCCHH--HHH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHH
Confidence 99999999999999997544 111 3456677888899999999999999999987777432 578899999
Q ss_pred ccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC---CHHHHHHHHHHHHHHhcCC-hhhHHHHHhhc
Q psy12594 176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND---EVNVKADAFLCLADIAKDS-PSLASTIADGA 251 (542)
Q Consensus 176 l~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~ 251 (542)
+.+.++.++.+|+.+|..+..+++... ..++..+... ++-.+...+..+..++..+ +. ....
T Consensus 185 l~d~n~~V~~~Al~lL~ei~~~d~~a~---------~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~ 250 (355)
T 3tjz_B 185 ASSDNIMVQYHALGLLYHVRKNDRLAV---------SKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSP 250 (355)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHH---------HHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------
T ss_pred hcCCCccHHHHHHHHHHHHHhhchHHH---------HHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHH
Confidence 999999999999999999998654322 2333333322 3444444444444444433 21 2235
Q ss_pred hHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHH
Q psy12594 252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQI 330 (542)
Q Consensus 252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 330 (542)
.++ +..+|++.++.|...|+.++..+....... ...++..|..++.++++.++..|++.|..+....|...+
T Consensus 251 ~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~-- 323 (355)
T 3tjz_B 251 LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT-- 323 (355)
T ss_dssp ------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH--
Confidence 677 888899999999999999999886522221 134566788889999999999999999998877665443
Q ss_pred HhhCchHHHHHhhcCCChhhHHHHHHHHH
Q psy12594 331 IELQGVGSLQTILQCPHKEQLQVAAAWTL 359 (542)
Q Consensus 331 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 359 (542)
..-.-+.+++.+++ ..+...|.-+|
T Consensus 324 ---~~n~~ie~li~d~n-~sI~t~Aittl 348 (355)
T 3tjz_B 324 ---ACNLDLENLVTDAN-RSIATLAITTL 348 (355)
T ss_dssp -----------------------------
T ss_pred ---HHHHHHHHHccCCc-HhHHHHHHHHh
Confidence 22334566777643 35655555444
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.01 E-value=3.8e-08 Score=104.47 Aligned_cols=267 Identities=14% Similarity=0.104 Sum_probs=186.7
Q ss_pred ChHHHHhhhc---CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC--------HhHHHHHHHHHHHH
Q psy12594 126 DLDSIISSLH---DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ--------LSLKHAAAFALDGI 194 (542)
Q Consensus 126 ~v~~Lv~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------~~~~~~a~~~L~nl 194 (542)
++..|-..|. +.++.++..|+.+|+-+...... . ++..|...+.+++ +.++..|+..|+-+
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 4666677776 56789999999999988765432 1 2566777776544 67888898899987
Q ss_pred hcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCChhHHHHHHH
Q psy12594 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPHGLVQKNAAT 272 (542)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~~~v~~~a~~ 272 (542)
..++. . ..+++.|..++.+.+..+++.++.+|+-+--...+ . .++. |+..+. ..++.+++.++.
T Consensus 465 ~~GS~--~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-~------~ai~~LL~~~~e~~~e~vrR~aal 530 (963)
T 4ady_A 465 AMGSA--N-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-P------EAIHDMFTYSQETQHGNITRGLAV 530 (963)
T ss_dssp STTCC--C-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-H------HHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hcCCC--C-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-H------HHHHHHHHHHhccCcHHHHHHHHH
Confidence 55332 1 12347788888877777788888888876333221 1 3344 555544 447899999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCHHHHHHhhh-cCCccchHHHHHHHhHhh--cCChHHHHHHHhhCchHHHHHhhcCCChh
Q psy12594 273 LLRDMCKHNLRLANLVVLAGGLDGLLRLID-CNGGYNSLPAIMALGYMS--AQSEQIAEQIIELQGVGSLQTILQCPHKE 349 (542)
Q Consensus 273 ~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 349 (542)
+|+.+..+.++.. +.+++.|. +.++.+|..++.+++--. .++.. .++.|+..+.+..++
T Consensus 531 gLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~---------aIq~LL~~~~~d~~d 592 (963)
T 4ady_A 531 GLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNNS---------AVKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH---------HHHHHHHHHHHCSCH
T ss_pred HHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHhccCCcH
Confidence 9998876665444 44555555 466778888887776433 33332 344455555544556
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC---CchhhHHhhcCCCCH
Q psy12594 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE---NPKELEQMLLGNVSE 426 (542)
Q Consensus 350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~---~i~~L~~lL~~~~~~ 426 (542)
.+|..|..+|+.+..++++ .++.++..|.+.. ++.+|..|++||+.+....+ .+..|..+++ +.|.
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~ 661 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVD 661 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCH
Confidence 8999999999998777764 4566677665443 68999999999999865433 3678888888 9999
Q ss_pred HHHHHHHHHHHhhCCCC
Q psy12594 427 ELLASILCAFAKILPCD 443 (542)
Q Consensus 427 ~v~~~~l~~l~~ll~~~ 443 (542)
.|++.++.+|..+....
T Consensus 662 ~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999888654
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.75 E-value=2.8e-07 Score=80.06 Aligned_cols=186 Identities=17% Similarity=0.173 Sum_probs=146.8
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
.+.+..|..+|.+.|+.++..|+.+|..+.+..+...+. ..-...++.++.++++.+..+...|+.+|..+..+.|-..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~-~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRM-MVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 357788999999999999999999999999433333333 3334689999999999999999999999999987754433
Q ss_pred h-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC
Q psy12594 120 G-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198 (542)
Q Consensus 120 ~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~ 198 (542)
. +. .+...+..++.++++-++.+++..++.+.-..+. + +++..+..++.+.++.++..++.+|.+++..+
T Consensus 111 ~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~-----~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 111 KTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--K-----LVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--H-----HHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 3 33 2567888999999999999999999988432211 1 23677889999999999999999999999844
Q ss_pred H--HHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594 199 P--ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 199 ~--~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
. +.. .+++.-+-.++++.|+.+++.|+.++-.+....
T Consensus 182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 2 222 344566788899999999999999999998763
No 74
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.73 E-value=4e-06 Score=81.95 Aligned_cols=318 Identities=13% Similarity=0.165 Sum_probs=204.4
Q ss_pred cCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCh---hhhh-HhhcCCh-HHHH-hhhcCCCHHHHHHHHHHHHHhhcC
Q psy12594 83 RNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDE---RCAG-LIEDKDL-DSII-SSLHDFDPDTRANAALALGGLAKD 155 (542)
Q Consensus 83 ~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~---~~~~-~~~~g~v-~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~ 155 (542)
..+...++.+|+. .+.++..+.+..+..+...++ .... +.+..-. ..+. ..+..+++-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 3467788888885 678999999999989887765 4444 4443322 2122 233444455566666666666532
Q ss_pred ChH---HHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHhhcC---------
Q psy12594 156 NKH---FAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAESASDCD--VIPLLIKALNN--------- 220 (542)
Q Consensus 156 ~~~---~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~ll~~--------- 220 (542)
.+. ....+.. .+.++..|... +.+.+..++.+|..|.. .++.|..+.+.+ .++.+..++..
T Consensus 156 ~~~~~~~l~~l~~---~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 156 GLHNVKLVEKLLK---NNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TTCCHHHHHHHHH---CHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CCccHhHHHHHhh---hHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 222 2222221 11455566653 35567788999999998 677888887544 35666543331
Q ss_pred -------C-CHHHHHHHHHHHHHHhcCChhhHHHHHhhchH--H-HHHhhcCC-ChhHHHHHHHHHHHHhcCCh----HH
Q psy12594 221 -------D-EVNVKADAFLCLADIAKDSPSLASTIADGATT--L-AVEHLTYP-HGLVQKNAATLLRDMCKHNL----RL 284 (542)
Q Consensus 221 -------~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~-L~~lL~~~-~~~v~~~a~~~L~~L~~~~~----~~ 284 (542)
. ...++..++.++|-|+-... ..+.+...++. + |+..++.. .+.+.+-++.+|.|+....+ ..
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~ 310 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV 310 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhH
Confidence 1 35678999999999987754 66666666554 6 77777776 79999999999999987652 22
Q ss_pred HH-HHHhcCCHHHHHHhhhcC---CccchHHHHHHHhHhh----------------------cCChHH-HHHHHh-----
Q psy12594 285 AN-LVVLAGGLDGLLRLIDCN---GGYNSLPAIMALGYMS----------------------AQSEQI-AEQIIE----- 332 (542)
Q Consensus 285 ~~-~~~~~~~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~----------------------~~~~~~-~~~~~~----- 332 (542)
.. .+...++ +.++..|... |+++.. .+..|...- .-+|.. ...++.
T Consensus 311 ~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~k 388 (480)
T 1ho8_A 311 IKQLLLLGNA-LPTVQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDE 388 (480)
T ss_dssp HHHHHHHHCH-HHHHHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGG
T ss_pred HHHHHHHccc-hHHHHHHhhCCCCcHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHH
Confidence 22 2333344 4566666553 333222 222221111 111211 112222
Q ss_pred -----hCchHHHHHhhcC---------CChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH
Q psy12594 333 -----LQGVGSLQTILQC---------PHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK 398 (542)
Q Consensus 333 -----~~~l~~L~~ll~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~ 398 (542)
..++..|+++|.+ ++++.+..-||.-+|.++.+.|+-+..+-+.|+-..+++++.++ +++||.+
T Consensus 389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~--d~~Vr~~ 466 (480)
T 1ho8_A 389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS--DSRVKYE 466 (480)
T ss_dssp GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--SHHHHHH
T ss_pred HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC--CHHHHHH
Confidence 2367889999974 23577888999999999999998888777889999999999987 5799999
Q ss_pred HHHHHHHHHhh
Q psy12594 399 CKNALNILIPK 409 (542)
Q Consensus 399 a~~aL~nl~~~ 409 (542)
|..|+..++.+
T Consensus 467 AL~avQklm~~ 477 (480)
T 1ho8_A 467 ALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.70 E-value=2.9e-08 Score=91.36 Aligned_cols=184 Identities=15% Similarity=0.123 Sum_probs=139.4
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
-+.+.+.+.+.+...|..++..|..+....+.....-. ..+++.|...+ ++.+..++..|+.+++.|+..-.......
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34577888899999999999999998864222100000 13367788888 48999999999999999996322211122
Q ss_pred hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChH
Q psy12594 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLR 283 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~ 283 (542)
+ ..++|.++..+.+.++.+|..+..+|..++...+ . ..+++ +...+.+.++.++..++..|..+... .+.
T Consensus 96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 2 4567999999999999999999999999987643 2 25678 99999999999999999999996443 343
Q ss_pred H--HHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 284 L--ANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 284 ~--~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
. ...+ ...+|.++.++.+.++.+|..|..+++.++.
T Consensus 168 ~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 2222 3678999999999999999999999998864
No 76
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.70 E-value=1.4e-05 Score=78.08 Aligned_cols=320 Identities=12% Similarity=0.082 Sum_probs=201.5
Q ss_pred hCCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCC-h---HHHHHHHhcC-cHHHHHHhhccCC-HHHHHHHHHHHHHH
Q psy12594 39 DLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKH-V---DIRQEVLERN-LVALVLKDLTKQN-KHYKKTALHMLTCV 111 (542)
Q Consensus 39 ~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~-~---~~~~~i~~~~-~l~~Lv~~L~~~~-~~~~~~a~~~L~~l 111 (542)
+..++..++.+|+ ....++.+..+..+..+. .. + .....+.+.. ....+.....+.+ ......+..++..+
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL--~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll 152 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELL--SSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLL 152 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHH--HCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHH--hcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHH
Confidence 3466778888886 456788888888888888 44 3 3334434332 2222333332334 44445555555555
Q ss_pred hcCChhhhhHhhcCChH--HHHhhhcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhccC--------
Q psy12594 112 AQQDERCAGLIEDKDLD--SIISSLHD-FDPDTRANAALALGGLAKDNKHFAERIVQCG--ALPPLVQILAS-------- 178 (542)
Q Consensus 112 ~~~~~~~~~~~~~g~v~--~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~ll~~-------- 178 (542)
........... ...+. -++..|.. ++...+..++.+|..+.. .+++|..+.+.+ .++.++.+++.
T Consensus 153 ~~~~~~~~~~l-~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 153 VQNGLHNVKLV-EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp TSTTTCCHHHH-HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred hccCCccHhHH-HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 43322111100 01112 23444444 234556678888888887 677788887653 36666544331
Q ss_pred -------C--CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCCh--HHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh----
Q psy12594 179 -------P--QLSLKHAAAFALDGIVKHSPELAESASDCDVI--PLLIKALN-NDEVNVKADAFLCLADIAKDSPS---- 242 (542)
Q Consensus 179 -------~--~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i--~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~---- 242 (542)
. ...++..++.++.-++. .++....+...+.. +.|+.+++ ....++.+-++.+|.|+....+.
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp --------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 1 25678999999999998 66677777766543 56666676 44688999999999999987631
Q ss_pred h-HHHHHhhchHHHHHhhcCC---ChhHHHHHHHHHHHHh---------------------cCChH---------HHHHH
Q psy12594 243 L-ASTIADGATTLAVEHLTYP---HGLVQKNAATLLRDMC---------------------KHNLR---------LANLV 288 (542)
Q Consensus 243 ~-~~~~~~~~~i~L~~lL~~~---~~~v~~~a~~~L~~L~---------------------~~~~~---------~~~~~ 288 (542)
. .+.+...++++++..|... |+++....-...-.|. ..+|. ++..+
T Consensus 310 ~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf 389 (480)
T 1ho8_A 310 VIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEF 389 (480)
T ss_dssp HHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGG
T ss_pred HHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHH
Confidence 1 2234444555555555543 7776655443322221 11111 11111
Q ss_pred Hh--cCCHHHHHHhhhc----------CCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHH
Q psy12594 289 VL--AGGLDGLLRLIDC----------NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA 356 (542)
Q Consensus 289 ~~--~~~i~~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~ 356 (542)
.+ ...+..|+.+|.+ .++.+..-||.=||.++...|.....+-+.|+-..+++++.++ +++|+.+|+
T Consensus 390 ~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL 468 (480)
T 1ho8_A 390 KKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEAL 468 (480)
T ss_dssp SSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHH
T ss_pred HhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHH
Confidence 11 1257788899974 3566788899999999999999998888889999999999985 579999999
Q ss_pred HHHHHhhc
Q psy12594 357 WTLGQIGK 364 (542)
Q Consensus 357 ~~L~~l~~ 364 (542)
.|+..+..
T Consensus 469 ~avQklm~ 476 (480)
T 1ho8_A 469 KATQAIIG 476 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.69 E-value=1.2e-07 Score=87.23 Aligned_cols=182 Identities=19% Similarity=0.209 Sum_probs=137.6
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc-CCCHHHHHHHHHHHHHhhcCC-hHHHHHHH
Q psy12594 87 ALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH-DFDPDTRANAALALGGLAKDN-KHFAERIV 164 (542)
Q Consensus 87 ~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~ 164 (542)
+.+.+.+.+.+...|..++..|..+....+....-.-..+++.|...+. +.+..++..|+.+++.++..- +.+...+
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 3577788889999999999999998765322211001245778888884 899999999999999998422 1111111
Q ss_pred HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hh-
Q psy12594 165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS-PS- 242 (542)
Q Consensus 165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~- 242 (542)
..++|.++..+.+.++.+|..+..+|.+++...+ .. .+++.+...+.+.++.+|..++..|..+.... ++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 2358999999999999999999999999987432 11 24588888999999999999999999965443 32
Q ss_pred -hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 243 -LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 243 -~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
....+ ..+++ |..++.+.++++|..|..++..++.
T Consensus 169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 37889 9999999999999999999999884
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.62 E-value=1.1e-06 Score=76.33 Aligned_cols=184 Identities=16% Similarity=0.160 Sum_probs=147.7
Q ss_pred cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12594 83 RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161 (542)
Q Consensus 83 ~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 161 (542)
.+.+..+..+|...++.++..++.+|..+...-+.... ..-...++.++.++.+.|..+...|++||..+..+.|-..+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34778889999999999999999999998876444444 44557899999999999999999999999999876554444
Q ss_pred HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q psy12594 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+.. ++..|..++++++.-++..++..++.+---++ . .+++..+..++.+.+.+++..++.+|.+++..+.
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--S-----KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--C-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--h-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4443 26788999999999999999999999833221 1 2334778888989999999999999999998553
Q ss_pred --hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594 242 --SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 242 --~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~ 280 (542)
+.. ..++. +-.+|++.|+.++..|+.++-.+...
T Consensus 183 D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 222 26677 88999999999999999999988754
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.60 E-value=3.9e-09 Score=86.97 Aligned_cols=119 Identities=22% Similarity=0.257 Sum_probs=91.9
Q ss_pred cCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH
Q psy12594 124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAE 203 (542)
Q Consensus 124 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~ 203 (542)
...++.++.+|+++++.+|..|+++|+.+... .++.|+.+++++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 35778899999999999999999888876431 26889999999999999999999999864 2
Q ss_pred HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHH
Q psy12594 204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRD 276 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~ 276 (542)
..++.|..++.++++.+|..++++|+++.. ...++ |..++.++++.++..++++|..
T Consensus 73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 246889999999999999999999999852 24577 8999988899999999988764
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.56 E-value=8.9e-09 Score=84.77 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=93.5
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhh
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
...++.+..+|+++++.+|..|+.+|..+. .. .++.|+..|.++++.+|..++++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--~~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG--DE-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS--ST-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC--ch-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 456788899999999999999999888876 21 26889999999999999999999988752
Q ss_pred hHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHH
Q psy12594 120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl 194 (542)
...++.|+.+++++++.+|..|+++|+.+.. + ..++.|+.+++++++.++..|+++|.+|
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1358899999999999999999999999863 2 2378899999998999999999998754
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.51 E-value=7.2e-06 Score=91.33 Aligned_cols=395 Identities=9% Similarity=0.020 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCC------ChHHHHHHHHHHHHhHccCC----------hHHHHH
Q psy12594 16 ARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADK------VPSIQHAALATLGKLMCAKH----------VDIRQE 79 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~------~~~v~~~a~~~L~~l~~~~~----------~~~~~~ 79 (542)
.|.+..+++..++...-. .. .+.++.|+..++++ ++..+..++..|..++ +. ...++.
T Consensus 101 vr~kl~~~la~i~~~~~p--~W--p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~--EEi~~~~~~~~r~~~~~~ 174 (971)
T 2x1g_F 101 VLNRLCISLGAYIVHMLG--EW--PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP--EEAQVIHTSVKRVVLRAE 174 (971)
T ss_dssp HHHHHHHHHHHHHHHTTC--C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHH--HHHHHCCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccc--cc--cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH--HHHhccCcHHHHHHHHHH
Confidence 466667777777664221 11 35677888888764 5667788888888877 31 011222
Q ss_pred HHhcCcHHHHHHhh----cc-CCH-------HHHHHHHHHHHHHhc--CChhhhhHhhcCChHHHHhhhc----------
Q psy12594 80 VLERNLVALVLKDL----TK-QNK-------HYKKTALHMLTCVAQ--QDERCAGLIEDKDLDSIISSLH---------- 135 (542)
Q Consensus 80 i~~~~~l~~Lv~~L----~~-~~~-------~~~~~a~~~L~~l~~--~~~~~~~~~~~g~v~~Lv~lL~---------- 135 (542)
+. ..++.++.++ .. .++ .++..++.++..... .-+.. .....++.+.. |.
T Consensus 175 l~--~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~ 248 (971)
T 2x1g_F 175 IA--KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHA 248 (971)
T ss_dssp HH--TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC-
T ss_pred HH--HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccc
Confidence 22 2344444433 32 222 678888888877554 22111 22334555555 41
Q ss_pred ------CCCHHHHHHHHHHHHHhhcCCh--HHHHHHHHcCChHHHHH-------hccCCC---HhHHHHHHHHHHHHhcC
Q psy12594 136 ------DFDPDTRANAALALGGLAKDNK--HFAERIVQCGALPPLVQ-------ILASPQ---LSLKHAAAFALDGIVKH 197 (542)
Q Consensus 136 ------~~~~~~~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~-------ll~~~~---~~~~~~a~~~L~nl~~~ 197 (542)
+.+++++..|+.++..+....+ +..+.+ . .+++.++. .+.+.+ .+.....+..+..++..
T Consensus 249 ~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 249 GDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred cccccCcCCcHHHHHHHHHHHHHHcCccccccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 1357899999999999986332 111111 1 11233332 223334 26666667777766653
Q ss_pred CHHHHH-----------HhhhCCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhcC---------ChhhHHHHH--hh
Q psy12594 198 SPELAE-----------SASDCDVIPLLIKALNN-----DEVNVKADAFLCLADIAKD---------SPSLASTIA--DG 250 (542)
Q Consensus 198 ~~~~~~-----------~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~--~~ 250 (542)
.+.... ..+ ...++.++.+... .++++...+++.+..++.. .......+. -.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (971)
T 2x1g_F 327 HSTLLLSGITSADPELSILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA 405 (971)
T ss_dssp THHHHHHHHHTCCHHHHHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 332211 111 1344555555533 4677889999988887651 111111111 12
Q ss_pred chHH-HHHhhcCC-Ch--------------hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc-----CCccch
Q psy12594 251 ATTL-AVEHLTYP-HG--------------LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC-----NGGYNS 309 (542)
Q Consensus 251 ~~i~-L~~lL~~~-~~--------------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~~~ 309 (542)
.+++ ++..+..+ ++ ..|..+..+|..++...++..- ..+++.+...+.+ .++..+
T Consensus 406 ~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l----~~~~~~l~~~l~~~~~~~~~w~~~ 481 (971)
T 2x1g_F 406 HLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYIL----EILAAMLDEAIADLQRHPTHWTKL 481 (971)
T ss_dssp HHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHH----HHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHhccCCCCcHHHH
Confidence 4555 55555433 11 3566777788777754431111 1223344444443 577789
Q ss_pred HHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHHH
Q psy12594 310 LPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH---SVDNVTALCEENVLSTLLSKI 386 (542)
Q Consensus 310 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll 386 (542)
..++.+++.++.+........+. .+++.+..+..+.+++.++..++|+++.++.- +++... .+++.++..+
T Consensus 482 eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l 555 (971)
T 2x1g_F 482 EACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL 555 (971)
T ss_dssp HHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh
Confidence 99999999998765432211111 13332223221212468999999999998632 122111 2456666666
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCC-----Cch----hhHHhhcCC--CCHHHHHHHHHHHHhhCC
Q psy12594 387 TQTCVSDNLKSKCKNALNILIPKCE-----NPK----ELEQMLLGN--VSEELLASILCAFAKILP 441 (542)
Q Consensus 387 ~~~~~~~~v~~~a~~aL~nl~~~~~-----~i~----~L~~lL~~~--~~~~v~~~~l~~l~~ll~ 441 (542)
+ +.|+..|++++.++++.++ +++ .|..++. . .+.+....+..++..++.
T Consensus 556 -~----~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~-~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 556 -N----SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN-TGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp -H----SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-STTSCHHHHHHHHHHHHHHHH
T ss_pred -C----hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHH
Confidence 3 2799999999999987653 223 3334555 3 355666666666666654
No 82
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.46 E-value=3.4e-06 Score=77.38 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=136.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHH-HhcCChhhhh-Hhh-cCChHHHHhhh-cCCCHHHHHHHHHHHHHhhcCC--hHHH-
Q psy12594 88 LVLKDLTKQNKHYKKTALHMLTC-VAQQDERCAG-LIE-DKDLDSIISSL-HDFDPDTRANAALALGGLAKDN--KHFA- 160 (542)
Q Consensus 88 ~Lv~~L~~~~~~~~~~a~~~L~~-l~~~~~~~~~-~~~-~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~--~~~~- 160 (542)
.+.+.+.+.+...|..++..|.. ++.+.+.... ..+ ...+..|...+ ++.+..++..|+.+|+.++..- +.+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556788999999999999999 8754333220 001 13577788888 7889999999999999998422 1222
Q ss_pred HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q psy12594 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 240 (542)
.... -++|.++..+++..+.++..+..++..++...+.......-...++.|...+++.++.++..++.+|..++...
T Consensus 100 ~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1211 24899999999999999999999999998743111000000134577888888889999999999999998765
Q ss_pred hhh---HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhc
Q psy12594 241 PSL---ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 241 ~~~---~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~ 279 (542)
+.. ........++| |..++.+.++++|..|..++..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 421 11122247899 9999999999999999999999874
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.4e-07 Score=84.15 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=137.8
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHH-hhcCChHHHHHHHH-cCChHHHHHhc-cCCCHhHHHHHHHHHHHHhcCCH--HHHH
Q psy12594 129 SIISSLHDFDPDTRANAALALGG-LAKDNKHFAERIVQ-CGALPPLVQIL-ASPQLSLKHAAAFALDGIVKHSP--ELAE 203 (542)
Q Consensus 129 ~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~ll-~~~~~~~~~~a~~~L~nl~~~~~--~~~~ 203 (542)
.+.+.+.+.+..-|..|+..|.. +..+.+.....-.+ ..++..|.+.+ ++.+..++..|+.+|+.|+.+-. ....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 87543321100000 12366778888 78899999999999999996321 1110
Q ss_pred HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh
Q psy12594 204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL 282 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~ 282 (542)
... ..++|.++..+.+..+.++..+..++..++...+.......-..+++ |+..|++.++.++..++.+|..+....+
T Consensus 100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 111 23578999999999999999999999999875421111000125788 9999999999999999999999886554
Q ss_pred ---HHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc
Q psy12594 283 ---RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA 321 (542)
Q Consensus 283 ---~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 321 (542)
......+....+|.+..++.+.++.+|..|..+++.++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222122225789999999999999999999999998763
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.34 E-value=0.00049 Score=76.37 Aligned_cols=337 Identities=11% Similarity=0.110 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-----cCCHHHHHHHHHHHHHHhcCChhhhhHhh-cCChHH
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-----KQNKHYKKTALHMLTCVAQQDERCAGLIE-DKDLDS 129 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~v~~ 129 (542)
.++..++.+|..+.....+.....+ ...++..++.+. ..++.+...++.++..++... ....+.. .+.++.
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~ 337 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNN 337 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHH
Confidence 4677888888888832223222211 124445555554 345788899999998887543 2222211 122333
Q ss_pred HH-----hhhc---------CCC--------------HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhcc----
Q psy12594 130 II-----SSLH---------DFD--------------PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA---- 177 (542)
Q Consensus 130 Lv-----~lL~---------~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~---- 177 (542)
++ ..+. ..| ...|..|..+|..++...+. .++. .+++.+.+.+.
T Consensus 338 li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~ 413 (960)
T 1wa5_C 338 ITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMS 413 (960)
T ss_dssp HHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhcc
Confidence 33 2221 111 23566777788877754331 1111 12333444444
Q ss_pred --CCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC-----CChHH----HHHhhcCC---CHHHHHHHHHHHHHHhcCChhh
Q psy12594 178 --SPQLSLKHAAAFALDGIVKHSPELAESASDC-----DVIPL----LIKALNND---EVNVKADAFLCLADIAKDSPSL 243 (542)
Q Consensus 178 --~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-----~~i~~----L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~ 243 (542)
+++...++.|+.+++.++....... ..... ...+. +...+.++ ++-+|..++|+++.++..-.
T Consensus 414 ~~~~~w~~reaal~algaia~~~~~~~-~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-- 490 (960)
T 1wa5_C 414 DPSKNWKFKDLYIYLFTALAINGNITN-AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-- 490 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHBSSCCBT-TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcccc-CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence 4567889999999999986321000 00000 22222 33344556 88999999999999987531
Q ss_pred HHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCCh-------HH-HHHHH--hcCCHHHHHHhhhcCC-----cc
Q psy12594 244 ASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNL-------RL-ANLVV--LAGGLDGLLRLIDCNG-----GY 307 (542)
Q Consensus 244 ~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~-------~~-~~~~~--~~~~i~~Lv~lL~~~~-----~~ 307 (542)
.+ .-..+++ ++..|.+++..|+..|+++|.+++.... .. ...+. -...++.|+.++.... ..
T Consensus 491 ~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~ 568 (960)
T 1wa5_C 491 KA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA 568 (960)
T ss_dssp HH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred HH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence 11 2346788 8888988889999999999999986411 10 01010 1234556666666641 11
Q ss_pred chHHHHHHHhHhhcC----ChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHH
Q psy12594 308 NSLPAIMALGYMSAQ----SEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH-SVDNVTALCEENVLSTL 382 (542)
Q Consensus 308 ~~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L 382 (542)
....+..+|+.++.. -......++. .....+....+++.+...+..++.+++.++.. .++.... +...++|.+
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~ 646 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTF 646 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHH
Confidence 334556666655432 1122222221 22223333334444456777788888888765 3333333 344577888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 383 LSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 383 ~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
..+|.... .++...+...+..+..
T Consensus 647 ~~iL~~~~--~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 647 LTVFSEDI--QEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHTTC--TTTHHHHHHHHHHHHH
T ss_pred HHHHHhhh--HhhHHHHHHHHHHHHH
Confidence 88887653 3566666666666543
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.31 E-value=9.9e-05 Score=81.94 Aligned_cols=332 Identities=12% Similarity=0.050 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc------cCCHHHHHHHHHHHHHHhcCChhhhhHhh-----c
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT------KQNKHYKKTALHMLTCVAQQDERCAGLIE-----D 124 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-----~ 124 (542)
..|..|...|..++....+..... .++.+...+. +.+...+..|+.+++.++.+......... .
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~-----~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNI-----FLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred CcHHHHHHHHHHHHHHcchhHHHH-----HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 467778888888882111112111 2233333344 45677888999999999753211110000 0
Q ss_pred CChHH----HHhhhcCC---CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594 125 KDLDS----IISSLHDF---DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 125 g~v~~----Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~ 197 (542)
...+. ++..++++ ++.+|..++|+++.++..-+. + . -..+++.+++.|.++++.++..|+++|.+++..
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~-~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A-Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H-H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H-H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 22222 33344556 799999999999999864321 1 1 123478888899988899999999999999873
Q ss_pred C-------HHHHHHhhh---CCChHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCCh-hhHHHHHhhchHH-HHHhh-
Q psy12594 198 S-------PELAESASD---CDVIPLLIKALNNDE---VN--VKADAFLCLADIAKDSP-SLASTIADGATTL-AVEHL- 259 (542)
Q Consensus 198 ~-------~~~~~~~~~---~~~i~~L~~ll~~~~---~~--~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-L~~lL- 259 (542)
. ++.....+. ...++.|..++.... .+ ..+.+..++..++.... .....+ ..+++ |...+
T Consensus 527 ~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~ 604 (960)
T 1wa5_C 527 RESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVT 604 (960)
T ss_dssp BSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHH
T ss_pred ccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHH
Confidence 1 111111111 223445555665531 11 23455555555543211 111111 12333 44333
Q ss_pred ---cCC-ChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC
Q psy12594 260 ---TYP-HGLVQKNAATLLRDMCKH-NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ 334 (542)
Q Consensus 260 ---~~~-~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 334 (542)
+++ +...+..++.++..+... .++... -.....+|.+...+..........+..+++.+..........+. .
T Consensus 605 ~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~--~ 681 (960)
T 1wa5_C 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK--P 681 (960)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG--G
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHH--H
Confidence 333 667777889999988876 333333 23446778888888877667777788777776543211111011 2
Q ss_pred chHHHH--HhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594 335 GVGSLQ--TILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC 410 (542)
Q Consensus 335 ~l~~L~--~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~ 410 (542)
+++.+. ..+... . .....+.+|.++....++.... ++ .++..+-.++.+.. .+..|.+.+..++..+
T Consensus 682 ~~~~l~~~~~~~~~--~-~~~~~~~~L~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~~----~~~~a~~ll~~i~~~~ 750 (960)
T 1wa5_C 682 LAQPLLAPNVWELK--G-NIPAVTRLLKSFIKTDSSIFPD-LV-PVLGIFQRLIASKA----YEVHGFDLLEHIMLLI 750 (960)
T ss_dssp GHHHHTSGGGGCCT--T-THHHHHHHHHHHHHHHGGGCSC-SH-HHHHHHHHHHTCTT----THHHHHHHHHHHHHHS
T ss_pred HHHHHcCHHHhcCC--C-CchhHHHHHHHHHHhChHHHHH-HH-HHHHHHHHHhCCCc----ccchHHHHHHHHHHHC
Confidence 344444 444432 1 2234555665553322211000 00 01222223333331 2478888998887654
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.28 E-value=0.00035 Score=77.67 Aligned_cols=399 Identities=11% Similarity=0.100 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHhcCC--CCchHHHHhCCchHHHHhhhcC-----CChHHHHHHHHHHHHhHccCC------hHHH-HHHH
Q psy12594 16 ARLCFVQTMSAFADK--PSTIHFLKDLNVVDLIVPLLAD-----KVPSIQHAALATLGKLMCAKH------VDIR-QEVL 81 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~s-----~~~~v~~~a~~~L~~l~~~~~------~~~~-~~i~ 81 (542)
.|.+..+++..++.. +... .+.++.|+.++++ .++..+..++..|..+. +. +..+ ..+.
T Consensus 119 ir~kl~~~la~i~~~~~p~~W-----p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~--ee~~~~~~~~~~r~~~~ 191 (963)
T 2x19_B 119 VLTRLCVALASLALSMMPDAW-----PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP--EEFQTSRLPQYRKGLVR 191 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHCC------CHHHHHHHHHHHHHHH--HHHTTCCC---------
T ss_pred HHHHHHHHHHHHHHHhCcccc-----chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH--HHHhcccCcHHHHHHHH
Confidence 455666666666653 3332 3677888888865 25567778888888887 31 0001 1111
Q ss_pred h--cCcHHHHHH----hhccC--CHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594 82 E--RNLVALVLK----DLTKQ--NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA 153 (542)
Q Consensus 82 ~--~~~l~~Lv~----~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~ 153 (542)
+ ...++.++. .+... +..+...++.++.......... ......++.+.+.+. +++++..|+.++..+.
T Consensus 192 ~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~--~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~ 267 (963)
T 2x19_B 192 TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPL--QDCEALIQAAFAALQ--DSELFDSSVEAIVNAI 267 (963)
T ss_dssp CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCG--GGTHHHHHHHHHHTT--STTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCc--ccchHHHHHHHHHhC--CchHHHHHHHHHHHHH
Confidence 0 123444443 34332 2347777777776654321111 112345666777773 5778899999999988
Q ss_pred cCC--hHHHHH---HHH--cCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHH------HhhhCCChHHHHHhhcC
Q psy12594 154 KDN--KHFAER---IVQ--CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAE------SASDCDVIPLLIKALNN 220 (542)
Q Consensus 154 ~~~--~~~~~~---i~~--~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~------~~~~~~~i~~L~~ll~~ 220 (542)
... +..... +.. .+..+.+...+...+.......+..+..++...+.... ..+ ...++.++.+...
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~l~~ll~~~~~ 346 (963)
T 2x19_B 268 SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF-LALVNMIMFCTGI 346 (963)
T ss_dssp TCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHTC
T ss_pred cccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH-HHHHHHHHHHHcC
Confidence 632 111111 111 02222233333444555555666666666542221110 111 1344555555553
Q ss_pred -----CCHHHHHHHHHHHHHHhcCC--------hhhHHHHHh--hchHH-HHHhhcCCCh---------------hHHHH
Q psy12594 221 -----DEVNVKADAFLCLADIAKDS--------PSLASTIAD--GATTL-AVEHLTYPHG---------------LVQKN 269 (542)
Q Consensus 221 -----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~-L~~lL~~~~~---------------~v~~~ 269 (542)
.++++...++..+..++... +.....+.. ..+++ ++..+..+++ +.+..
T Consensus 347 ~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~ 426 (963)
T 2x19_B 347 PGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD 426 (963)
T ss_dssp SSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHH
Confidence 34556666666666665411 111111111 23455 5555543321 12445
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhh----hcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhh--
Q psy12594 270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLI----DCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTIL-- 343 (542)
Q Consensus 270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-- 343 (542)
+..+|..++...+... . ...++.+...+ .+.++..+..++.+++.++.+..... ...++.++..+
T Consensus 427 ~~~~L~~~~~~~~~~~---l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~ 497 (963)
T 2x19_B 427 ISDTLMYVYEMLGAEL---L-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPR 497 (963)
T ss_dssp HHHHHHHHHHHHTHHH---H-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccHHH---H-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHh
Confidence 5556666553211110 0 11223344444 45567788999999999987643211 12333333333
Q ss_pred -cCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-----Cchhh-
Q psy12594 344 -QCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-----NPKEL- 416 (542)
Q Consensus 344 -~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-----~i~~L- 416 (542)
.. +++.++..++|+++.++.--.... ..+ ..+++.++..|.+ +.|+..|++++.+++..++ +++.+
T Consensus 498 l~~-~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~~~~~l~p~~~~il 570 (963)
T 2x19_B 498 ISI-SNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN----PELSVSSVSTLKKICRECKYDLPPYAANIV 570 (963)
T ss_dssp SCC-CSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC----GGGHHHHHHHHHHHHHHTGGGCTTTHHHHH
T ss_pred CCC-CcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC----chHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 22 245799999999999864211111 122 3688888888864 4899999999999987652 23333
Q ss_pred ---HHhhcCC--CCHHHHHHHHHHHHhhCCCC
Q psy12594 417 ---EQMLLGN--VSEELLASILCAFAKILPCD 443 (542)
Q Consensus 417 ---~~lL~~~--~~~~v~~~~l~~l~~ll~~~ 443 (542)
..++. . -+.+....+..++..++...
T Consensus 571 ~~l~~~l~-~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 571 AVSQDVLM-KQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhc-cCCCChHHHHHHHHHHHHHHhcC
Confidence 33444 3 24577777788887776544
No 87
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.23 E-value=3.3e-05 Score=83.30 Aligned_cols=294 Identities=12% Similarity=0.104 Sum_probs=194.3
Q ss_pred hhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh--hhhHhhcCC
Q psy12594 49 LLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER--CAGLIEDKD 126 (542)
Q Consensus 49 lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~g~ 126 (542)
-+...+..-+..++..+..+........ ....+.+..+.+.+.+.... ..|+.++..++..... ..+..-.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~ 96 (986)
T 2iw3_A 22 KLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQL 96 (986)
T ss_dssp HHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTT
T ss_pred hccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHH
Confidence 3444334555666677777662111110 00114566666666653333 8888899999855321 123222268
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhccCC-CHhHHHHHHHHHHHHhcCCHHHHHH
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHSPELAES 204 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~nl~~~~~~~~~~ 204 (542)
++.++..+.+....+|..|..++..+... ++.-.. .++|.|+..|++. ....+..|+.++..|+...++....
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~ 171 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL 171 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999888899999988888777643 333222 2389999999766 5899999999999999866654443
Q ss_pred hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594 205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
-+ ..++|.+...+.+..+++...+..++..+|..-. +.+. ...+| |+..+.++++ .-.++..|..-+--...
T Consensus 172 ~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~-n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 172 RM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVD-NKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCC-CTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC
T ss_pred hc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCC-Ccch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee
Confidence 33 5678999999999999999999999999987321 2211 25688 9999998854 22233333322111100
Q ss_pred HHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHH
Q psy12594 284 LANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQ 361 (542)
Q Consensus 284 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~ 361 (542)
....+ .-.+|.|.+-|......++..++-++.|++. .++.-...++- ..+|.+......-.++++|+.|.+++..
T Consensus 245 ~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 245 TPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp CHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred cchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 00000 1235667777777777788899999999997 55665655654 7888888888887888999888888776
Q ss_pred h
Q psy12594 362 I 362 (542)
Q Consensus 362 l 362 (542)
|
T Consensus 322 l 322 (986)
T 2iw3_A 322 L 322 (986)
T ss_dssp H
T ss_pred H
Confidence 6
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.21 E-value=0.0033 Score=70.41 Aligned_cols=371 Identities=13% Similarity=0.136 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHhcCC--CCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-h--------H-----HHHH
Q psy12594 16 ARLCFVQTMSAFADK--PSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-V--------D-----IRQE 79 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~--------~-----~~~~ 79 (542)
.|.+..+++..++.. |... .+.++.|+.+++ .++..+..++.+|..+. +. . . .+..
T Consensus 116 i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~--eev~~~~~~~~~~~r~~~lk~~ 187 (1049)
T 3m1i_C 116 LINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-SSVNVCENNMIVLKLLS--EEVFDFSAEQMTQAKALHLKNS 187 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-TCHHHHHHHHHHHHHHH--HHHHTSCTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-cChHHHHHHHHHHHHHH--HHHHHhcchhhhhHHHHHHHHH
Confidence 355566666666653 3222 356778888876 45556667777777776 32 0 0 1122
Q ss_pred HHhc--CcHHHHHHhhcc-CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594 80 VLER--NLVALVLKDLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN 156 (542)
Q Consensus 80 i~~~--~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 156 (542)
+... .+++.+...+.+ ++..++..++.++.++..--+ ...+.....++.+.+.+. .++.++..|+.+|..+....
T Consensus 188 l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 188 MSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCC
Confidence 2221 122333444443 567889999999988754332 222445566777764332 37899999999999988542
Q ss_pred --hH---HHHHHHH--cCChHHHHH-hc-------------cCCCHhHHHHHHHHHHHHhcCC-------HHHHHHhhhC
Q psy12594 157 --KH---FAERIVQ--CGALPPLVQ-IL-------------ASPQLSLKHAAAFALDGIVKHS-------PELAESASDC 208 (542)
Q Consensus 157 --~~---~~~~i~~--~g~i~~L~~-ll-------------~~~~~~~~~~a~~~L~nl~~~~-------~~~~~~~~~~ 208 (542)
+. ....+.. .+++..+.. ++ .+.+.+.....+..+..+.... ++.... + .
T Consensus 266 ~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-l-~ 343 (1049)
T 3m1i_C 266 IPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL-L-L 343 (1049)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH-H-H
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH-H-H
Confidence 21 1111111 111222211 11 1223444445555554443311 111111 1 1
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhhHHHH--HhhchHH-HHHhhcCCC------------------
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCLADIAK----DSPSLASTI--ADGATTL-AVEHLTYPH------------------ 263 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~--~~~~~i~-L~~lL~~~~------------------ 263 (542)
.+++.++.....++.++...++..+..++. .. ...... .-..+++ ++..+..++
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~-~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~ 422 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP-LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVK 422 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHST-TCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhc
Confidence 345666666667788888888887777776 21 111111 1123445 555543220
Q ss_pred -h---hHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHHHHHHHhhCchH
Q psy12594 264 -G---LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVG 337 (542)
Q Consensus 264 -~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 337 (542)
. ..+..+..+|..++...+...- .-+.+.+-..+.+ .++..+..++++++.++.........-.-..+++
T Consensus 423 d~d~~~~~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~ 498 (1049)
T 3m1i_C 423 ESDTIQLYKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK 498 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence 0 2344566677777643332211 1223444445543 4667889999999999865433221111123455
Q ss_pred HHHHhhcCC----ChhhHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhC
Q psy12594 338 SLQTILQCP----HKEQLQVAAAWTLGQIGKH---SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKC 410 (542)
Q Consensus 338 ~L~~ll~~~----~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~ 410 (542)
.|..+.... +.+.++..++|+++.++.- +++... .+++.++..+.++ ++.|+..|++++.+++..+
T Consensus 499 ~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 499 DLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHET--HEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHH
Confidence 555543321 2234555689999987532 222222 2566677777765 5799999999999998764
No 89
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.09 E-value=0.00013 Score=67.77 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=118.3
Q ss_pred HHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhc
Q psy12594 172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA 251 (542)
Q Consensus 172 L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 251 (542)
+++-|.+.+.+-++.++.-|..+-..+.+....++..+++..|+.+....+.+.+..++.+|.+|..+...+...+....
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 44555556677788888999985555888999999999999999999999999999999999999987543334444677
Q ss_pred hHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc----------CCHHHHHHhhh---cCCccchHHHHHHHh
Q psy12594 252 TTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA----------GGLDGLLRLID---CNGGYNSLPAIMALG 317 (542)
Q Consensus 252 ~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----------~~i~~Lv~lL~---~~~~~~~~~a~~~L~ 317 (542)
.+. +..++.+.+..|.+.++..|..++..++.....+.+. .-++.|+..|+ +.+..++..|+..|-
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN 282 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN 282 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 888 9999998899999999999999988776554433221 23778999997 667778888887766
Q ss_pred HhhcC
Q psy12594 318 YMSAQ 322 (542)
Q Consensus 318 ~l~~~ 322 (542)
.+..+
T Consensus 283 ~lL~~ 287 (339)
T 3dad_A 283 KTLAA 287 (339)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65443
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.09 E-value=0.00018 Score=66.80 Aligned_cols=153 Identities=13% Similarity=0.044 Sum_probs=117.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA 291 (542)
Q Consensus 213 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 291 (542)
.++.-|.+.+.+.++.++.-|..+-..+.++...++..+++. |+......+...+..++.+|.++-.+...+...+...
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 344555567788888899999984445557999999999999 9999999999999999999999987655554544466
Q ss_pred CCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhh----------CchHHHHHhhc--CCChhhHHHHHHHHH
Q psy12594 292 GGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL----------QGVGSLQTILQ--CPHKEQLQVAAAWTL 359 (542)
Q Consensus 292 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~--~~~~~~v~~~a~~~L 359 (542)
..+..+..++.+.+..+...|+.+|..++..++.....+.+. ..+..|+.+|. ...+.+++..|.-.+
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 789999999998888899999999999988776555444332 23788999997 224567887776655
Q ss_pred HHhhcC
Q psy12594 360 GQIGKH 365 (542)
Q Consensus 360 ~~l~~~ 365 (542)
-.+..+
T Consensus 282 N~lL~~ 287 (339)
T 3dad_A 282 NKTLAA 287 (339)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 554443
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.04 E-value=0.0089 Score=66.01 Aligned_cols=382 Identities=13% Similarity=0.142 Sum_probs=199.7
Q ss_pred CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC---------h-----HHHHHHHhc--CcHHHHHHhhcc-CCHHHHH
Q psy12594 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH---------V-----DIRQEVLER--NLVALVLKDLTK-QNKHYKK 102 (542)
Q Consensus 40 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~---------~-----~~~~~i~~~--~~l~~Lv~~L~~-~~~~~~~ 102 (542)
.+.++.++.+++++ +......+..|..|. +. . ..++.+... .+++.+...|.+ .++.+..
T Consensus 137 p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~--EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~ 213 (1023)
T 4hat_C 137 PEFIPELIGSSSSS-VNVCENNMIVLKLLS--EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIV 213 (1023)
T ss_dssp TTHHHHHHHHTTTC-HHHHHHHHHHHHHHH--HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHHHHHH--HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 45677777777543 445556667776665 21 0 112222221 123333334443 5677888
Q ss_pred HHHHHHHHHhcCChhhhhHhhcCChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCC---h--HHHHHHHHc--CChHHH--
Q psy12594 103 TALHMLTCVAQQDERCAGLIEDKDLDSII-SSLHDFDPDTRANAALALGGLAKDN---K--HFAERIVQC--GALPPL-- 172 (542)
Q Consensus 103 ~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~---~--~~~~~i~~~--g~i~~L-- 172 (542)
.++.++.....-- +...++..+.++.+. .++. ++.++..|+.||..+.... + .+.+.+... +.++.+
T Consensus 214 ~~L~~l~s~l~WI-~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~ 290 (1023)
T 4hat_C 214 ATLESLLRYLHWI-PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIAT 290 (1023)
T ss_dssp HHHHHHHHHTTTS-CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 8889988876532 233366778899999 8874 6789999999999998622 2 222222110 111111
Q ss_pred ------------HHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC---------CChHHHHHhhcCCCHHHHHHHHH
Q psy12594 173 ------------VQILASPQLSLKHAAAFALDGIVKHSPELAESASDC---------DVIPLLIKALNNDEVNVKADAFL 231 (542)
Q Consensus 173 ------------~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~---------~~i~~L~~ll~~~~~~~~~~a~~ 231 (542)
...-...+.+....-+..+..+..... . +++. .++..|+.+-..++.++-..++.
T Consensus 291 ~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~---~-li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~ 366 (1023)
T 4hat_C 291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR---A-LLESDESLRELLLNAHQYLIQLSKIEERELFKTTLD 366 (1023)
T ss_dssp HTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG---G-GGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH---H-HHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 111122245555556666655554111 1 1211 11224444444557777677666
Q ss_pred HHHHHhcCC--hhhHHHHHh---hchHH-HHHhhcCCC--------------------hh-HHH-HHHHHHHHHhcCCh-
Q psy12594 232 CLADIAKDS--PSLASTIAD---GATTL-AVEHLTYPH--------------------GL-VQK-NAATLLRDMCKHNL- 282 (542)
Q Consensus 232 ~L~~l~~~~--~~~~~~~~~---~~~i~-L~~lL~~~~--------------------~~-v~~-~a~~~L~~L~~~~~- 282 (542)
.-..++..- ...+..... ..+++ ++..+..++ ++ -.. ..-.+|..++.-..
T Consensus 367 FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~ 446 (1023)
T 4hat_C 367 YWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI 446 (1023)
T ss_dssp HHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH
Confidence 554554310 000111111 23455 555554432 00 111 11133333332111
Q ss_pred HHHHHHHhcCCHHHHHHhhhc--CCccchHHHHHHHhHhhcCChHH-HHHHHhhCchHHHHHhhcCC----ChhhHHHHH
Q psy12594 283 RLANLVVLAGGLDGLLRLIDC--NGGYNSLPAIMALGYMSAQSEQI-AEQIIELQGVGSLQTILQCP----HKEQLQVAA 355 (542)
Q Consensus 283 ~~~~~~~~~~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~----~~~~v~~~a 355 (542)
+..+ -.++.+.+.+.+ .++..+.++++++|.++.+..+. ...++ ..+++.|+.++.+. +...++..+
T Consensus 447 ~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~ 520 (1023)
T 4hat_C 447 DTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDI 520 (1023)
T ss_dssp HHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHH
Confidence 1111 122334444443 46778999999999998765443 22222 35778888887631 123456678
Q ss_pred HHHHHHhhc---CChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC-------------CchhhHHh
Q psy12594 356 AWTLGQIGK---HSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE-------------NPKELEQM 419 (542)
Q Consensus 356 ~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~-------------~i~~L~~l 419 (542)
+|++|.++. .+++.... ++..|+..+.++ ++.++..|+||+.++.++|. +++.++..
T Consensus 521 ~~~lGry~~wl~~~~~~L~~-----vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~ 593 (1023)
T 4hat_C 521 MYVVGQYPRFLKAHWNFLRT-----VILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD 593 (1023)
T ss_dssp HHHHHTCHHHHHHCHHHHHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHH-----HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence 899998853 23332222 344455555543 46899999999999987653 23333322
Q ss_pred hcC---CCCHHHHHHHHHHHHhhCCCCh
Q psy12594 420 LLG---NVSEELLASILCAFAKILPCDP 444 (542)
Q Consensus 420 L~~---~~~~~v~~~~l~~l~~ll~~~~ 444 (542)
+.. .-+++-...+.+++..++...+
T Consensus 594 l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 594 IQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 220 3455666677777777777654
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.03 E-value=0.0011 Score=73.74 Aligned_cols=373 Identities=11% Similarity=0.067 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCch--HHHHhCCchHHHHhh-------hcCCCh---HHHHHHHHHHHHhHccCC-hH-HH-
Q psy12594 13 YQRARLCFVQTMSAFADKPSTI--HFLKDLNVVDLIVPL-------LADKVP---SIQHAALATLGKLMCAKH-VD-IR- 77 (542)
Q Consensus 13 ~~~~r~~~~~~l~~l~~~~~~~--~~l~~~g~i~~L~~l-------L~s~~~---~v~~~a~~~L~~l~~~~~-~~-~~- 77 (542)
....|..+++++..+...+... ..+.. ..+|.++.+ +.++|. ......++.+..++ .. .. ..
T Consensus 257 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~--~~~~~~~~~ 333 (971)
T 2x1g_F 257 ENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSV--ERHSTLLLS 333 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHH--HHTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3455778888888887743311 11111 223333322 233342 55555666666666 22 11 11
Q ss_pred ----------HHHHhcCcHHHHHHhhcc-----CCHHHHHHHHHHHHHHhcC---------ChhhhhH---hhcCChHHH
Q psy12594 78 ----------QEVLERNLVALVLKDLTK-----QNKHYKKTALHMLTCVAQQ---------DERCAGL---IEDKDLDSI 130 (542)
Q Consensus 78 ----------~~i~~~~~l~~Lv~~L~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~---~~~g~v~~L 130 (542)
..+ ...++.++.+..+ .++.+...++.++..++.. .+..... .-...++.+
T Consensus 334 ~~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 411 (971)
T 2x1g_F 334 GITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRIL 411 (971)
T ss_dssp HHHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred HhccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHH
Confidence 111 1344555555433 4677888888888777541 1111111 111344555
Q ss_pred HhhhcCC--------CH-------HHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHhccC-----CCHhHHHHHHH
Q psy12594 131 ISSLHDF--------DP-------DTRANAALALGGLAKDNK-HFAERIVQCGALPPLVQILAS-----PQLSLKHAAAF 189 (542)
Q Consensus 131 v~lL~~~--------~~-------~~~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~-----~~~~~~~~a~~ 189 (542)
+..+.-+ ++ ..|..+..+|..++...+ .....+ ++.+-..+.. .+...++.++.
T Consensus 412 ~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~ 486 (971)
T 2x1g_F 412 VRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIY 486 (971)
T ss_dssp HHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 5444311 11 345566666666664332 221111 2222233322 45678999999
Q ss_pred HHHHHhcCCHHHHHHhhhCCChHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCC
Q psy12594 190 ALDGIVKHSPELAESASDCDVIPLLIKAL---N--NDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPH 263 (542)
Q Consensus 190 ~L~nl~~~~~~~~~~~~~~~~i~~L~~ll---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~ 263 (542)
+++.++....+... ..++.++.++ . +.++.++..++|+++.++..-....+ .-..+++ |+..|.
T Consensus 487 ~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl~~l~~~l~--- 556 (971)
T 2x1g_F 487 SFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA--YIPPAINLLVRGLN--- 556 (971)
T ss_dssp HHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHHH---
T ss_pred HHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHhC---
Confidence 99999885433221 2233333332 2 34889999999999998863211111 1135677 777772
Q ss_pred hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCCh-HHHHHHHhhCchHHHH
Q psy12594 264 GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSE-QIAEQIIELQGVGSLQ 340 (542)
Q Consensus 264 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~ 340 (542)
+.++..|++++.+++........... ...+..+..++..+ +...+.....+++.++...+ +....... ..++.++
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~ 634 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCF 634 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHH
Confidence 78999999999999965543322111 34566777777764 44578888888888876422 22222222 2333333
Q ss_pred ----HhhcCCC-hhhHHHHHHHHHHHhhcC-----C-----------hHHHHHHHHcCChHHHHHHHhcCCCChHHHHHH
Q psy12594 341 ----TILQCPH-KEQLQVAAAWTLGQIGKH-----S-----------VDNVTALCEENVLSTLLSKITQTCVSDNLKSKC 399 (542)
Q Consensus 341 ----~ll~~~~-~~~v~~~a~~~L~~l~~~-----~-----------~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a 399 (542)
.++.... +++.+.....++..++.. . ++.... ....+++.+..++.....++++.+.+
T Consensus 635 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~e~~ 713 (971)
T 2x1g_F 635 EELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEIDVLEAA 713 (971)
T ss_dssp HHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3444322 222333444444444311 1 011111 22457888888887543356899999
Q ss_pred HHHHHHHHh
Q psy12594 400 KNALNILIP 408 (542)
Q Consensus 400 ~~aL~nl~~ 408 (542)
++++++++.
T Consensus 714 ~~~~~~~~~ 722 (971)
T 2x1g_F 714 CSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.00 E-value=0.0012 Score=71.28 Aligned_cols=295 Identities=13% Similarity=0.115 Sum_probs=195.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC---hHHHHHHH
Q psy12594 88 LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN---KHFAERIV 164 (542)
Q Consensus 88 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~~~i~ 164 (542)
.+++.+...+..-+..++..+..+........ ....+.++.+.+.+.+.... +.|+.++..++... +..-..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEH-DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS-SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhcccccc-ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 34555554334445666667777655431111 12236777777777665443 88888899998432 22223333
Q ss_pred HcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChh
Q psy12594 165 QCGALPPLVQILASPQLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKDSPS 242 (542)
Q Consensus 165 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~ 242 (542)
+.+|.++..+.+....+|.+|..++..+...- +.... .++|.|...+.+. ....+..|+.++..|+...++
T Consensus 95 --~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 95 --QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp --TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 57899999999888999999888888777633 33332 3458888888755 689999999999999987642
Q ss_pred hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC--ChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHh
Q psy12594 243 LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH--NLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM 319 (542)
Q Consensus 243 ~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 319 (542)
+-...-..++| +-..+-+..++|+..+..++..+|.- +.+. ...+|.|+..+.+++. ...++..|+.-
T Consensus 168 -~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~ 238 (986)
T 2iw3_A 168 -QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGAT 238 (986)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred -HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence 22223357888 88889999999999999999999852 1221 3578999999988743 33344444432
Q ss_pred hc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC--ChHHHHHHHHcCChHHHHHHHhcCCCChHH
Q psy12594 320 SA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH--SVDNVTALCEENVLSTLLSKITQTCVSDNL 395 (542)
Q Consensus 320 ~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v 395 (542)
.. .-+.-.-. =.+|.|.+-|... ...++..++-++.|++.- +|.....++. ..+|.+-.....- .++++
T Consensus 239 tfv~~v~~~~l~----~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~-~~pe~ 311 (986)
T 2iw3_A 239 TFVAEVTPATLS----IMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATI-ADPEA 311 (986)
T ss_dssp CCCSCCCHHHHH----HHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTC-CSHHH
T ss_pred eeEeeecchhHH----HHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhcc-CCHHH
Confidence 21 11111111 2466777777663 457888999999999863 5555555443 4677776666654 47899
Q ss_pred HHHHHHHHHHHHh
Q psy12594 396 KSKCKNALNILIP 408 (542)
Q Consensus 396 ~~~a~~aL~nl~~ 408 (542)
|..|..|+..|..
T Consensus 312 r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 312 REVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888853
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.96 E-value=0.0031 Score=69.97 Aligned_cols=341 Identities=8% Similarity=-0.002 Sum_probs=176.4
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hH---HHHHHHh--cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VD---IRQEVLE--RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQ 114 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~---~~~~i~~--~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~ 114 (542)
..++.+.+.+ .++..+..|+.++..+..... +. ....+.. .+..+.+...+..++.+.....+.++..++..
T Consensus 241 ~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 241 ALIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3455555555 367889999999999994322 11 1111111 11122222223334555555556666665532
Q ss_pred Chh-h------hhHhhcCChHHHHhhhcC-----CCHHHHHHHHHHHHHhhcCC--------hHHHHHHHH--cCChHHH
Q psy12594 115 DER-C------AGLIEDKDLDSIISSLHD-----FDPDTRANAALALGGLAKDN--------KHFAERIVQ--CGALPPL 172 (542)
Q Consensus 115 ~~~-~------~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~i~~--~g~i~~L 172 (542)
... . .... ...++.++.+..+ .++.+...++.....++... +.....+.. ..+++.+
T Consensus 319 ~~~~l~~~~~~~~~~-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 397 (963)
T 2x19_B 319 HSRALLDQVEHWQSF-LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL 397 (963)
T ss_dssp HHHHHHHCGGGHHHH-HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCccchHHH-HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 111 0 0100 1345556655554 24445555555444444310 111111110 0234555
Q ss_pred HHhccCCCH---------------hHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh----cCCCHHHHHHHHHHH
Q psy12594 173 VQILASPQL---------------SLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL----NNDEVNVKADAFLCL 233 (542)
Q Consensus 173 ~~ll~~~~~---------------~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L 233 (542)
+..+..++. +.|..+..+|..++...++ .+. .-..+.+...+ .+.+...++.+++++
T Consensus 398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 555543221 2244555566555542111 111 11123444444 456788999999999
Q ss_pred HHHhcCChhhHHHHHhhchHH-HHHhh---cCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccch
Q psy12594 234 ADIAKDSPSLASTIADGATTL-AVEHL---TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS 309 (542)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~i~-L~~lL---~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~ 309 (542)
+.++....... ...++ ++..+ .++++.++..+++++..++..-....+. -..+++.++..+.+ +.++
T Consensus 474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl~~l~~~l~~--~~V~ 544 (963)
T 2x19_B 474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSVLPLVLHALGN--PELS 544 (963)
T ss_dssp HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTHHHHHHHTTC--GGGH
T ss_pred HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHhCC--chHH
Confidence 99997643211 12333 33332 3357889999999999987542221121 24788889988865 7899
Q ss_pred HHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCC-hhhHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHHHHHHh
Q psy12594 310 LPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH-KEQLQVAAAWTLGQIGKHSV-DNVTALCEENVLSTLLSKIT 387 (542)
Q Consensus 310 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~ll~ 387 (542)
..|+.++.+++........... ..++..|..++.... +...+..+..+++.++...+ +.....++ .+++.+...+.
T Consensus 545 ~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l~ 622 (963)
T 2x19_B 545 VSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLE 622 (963)
T ss_dssp HHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999865433221112 135555666666532 35788888999999875443 43333332 24444444433
Q ss_pred c---CCCChHHHHHH
Q psy12594 388 Q---TCVSDNLKSKC 399 (542)
Q Consensus 388 ~---~~~~~~v~~~a 399 (542)
. ...+++.+...
T Consensus 623 ~~~~~~~~~~~~~~~ 637 (963)
T 2x19_B 623 KLAEEIPNPSNKLAI 637 (963)
T ss_dssp HHHSSCSCHHHHHHH
T ss_pred HHHhCCCCHHHHHHH
Confidence 1 21245555543
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.86 E-value=0.0014 Score=72.10 Aligned_cols=305 Identities=10% Similarity=0.030 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHcCChHHHH
Q psy12594 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN--KHFAERIVQCGALPPLV 173 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~ 173 (542)
.++.++..++.++.....-- +...++..+.++.+.++|.+ ++++..|+.||..+.... ++.+..++..=.+...+
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 67888889999999877532 23335566788888888864 899999999999988433 33333333320011222
Q ss_pred Hhcc--CCCHhHHHHHHHHHHHHhcC------CH-----HHHH---HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 174 QILA--SPQLSLKHAAAFALDGIVKH------SP-----ELAE---SASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 174 ~ll~--~~~~~~~~~a~~~L~nl~~~------~~-----~~~~---~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
..+. .++.+..+..+..+..++.. .+ +.+. ..+ .+.++.++.++.+++.++-..++..+..+.
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l-~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQL-YNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHH-HHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 2222 35666665555444433321 11 1111 111 357888889998888888777766655554
Q ss_pred cCC---------hhhHHHHHhhchHH-HHHhhcCC-----Ch-----------hHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594 238 KDS---------PSLASTIADGATTL-AVEHLTYP-----HG-----------LVQKNAATLLRDMCKHNLRLANLVVLA 291 (542)
Q Consensus 238 ~~~---------~~~~~~~~~~~~i~-L~~lL~~~-----~~-----------~v~~~a~~~L~~L~~~~~~~~~~~~~~ 291 (542)
... ......+. ..+++ ++..+..+ +. +.|+.....+..++.-.++..-...-.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~ 439 (980)
T 3ibv_A 361 VSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS 439 (980)
T ss_dssp HHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 210 00111111 23445 55555432 11 245444433333333333322210000
Q ss_pred CCHHHHHHhh---hcCCccchHHHHHHHhHhhcCChHHHHHH-Hhh----CchHHHHHhhc----CCChhhHHHHHHHHH
Q psy12594 292 GGLDGLLRLI---DCNGGYNSLPAIMALGYMSAQSEQIAEQI-IEL----QGVGSLQTILQ----CPHKEQLQVAAAWTL 359 (542)
Q Consensus 292 ~~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~----~~l~~L~~ll~----~~~~~~v~~~a~~~L 359 (542)
...+.+...+ .+.++..++.++.+|+.++.+........ -+. .+++.+..++. ..+.+.++..+++++
T Consensus 440 ~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l 519 (980)
T 3ibv_A 440 AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEIL 519 (980)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 1112222333 23457789999999999987644311110 001 13444555544 124478999999999
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHHHhc--C--CCChHHHHHHHHHHHHHHhhCC
Q psy12594 360 GQIGKHSVDNVTALCEENVLSTLLSKITQ--T--CVSDNLKSKCKNALNILIPKCE 411 (542)
Q Consensus 360 ~~l~~~~~~~~~~l~~~~~l~~L~~ll~~--~--~~~~~v~~~a~~aL~nl~~~~~ 411 (542)
+..+.--.. ....++.++..+-+ + +++..|+..|+.++.++++.+.
T Consensus 520 ~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 520 VRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 998643211 12355666666555 1 2246899999999999988764
No 96
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.80 E-value=0.0041 Score=68.49 Aligned_cols=297 Identities=12% Similarity=0.059 Sum_probs=160.4
Q ss_pred HHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhc--
Q psy12594 18 LCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLT-- 94 (542)
Q Consensus 18 ~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~-- 94 (542)
..+++++..... --....+.+.+.++.+..++.+ +.++..|+.+|..+.+... ++.+..++..=.+...+..+.
T Consensus 211 ~~~L~~l~s~i~-wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~ 287 (980)
T 3ibv_A 211 GLCLQVYAQWVS-WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQ 287 (980)
T ss_dssp HHHHHHHHHHTT-TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHh-hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcc
Confidence 344444444443 1223445556788888888864 8999999999999995544 444444433212233333333
Q ss_pred cCCHHHHHHHHHHHHHHhc------CCh-----hhh-h--HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-----
Q psy12594 95 KQNKHYKKTALHMLTCVAQ------QDE-----RCA-G--LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD----- 155 (542)
Q Consensus 95 ~~~~~~~~~a~~~L~~l~~------~~~-----~~~-~--~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~----- 155 (542)
.++.+..+.-+..+..++. ..+ +.. . -.-.+.++.++.++.+++.++-..+...+..+...
T Consensus 288 ~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~ 367 (980)
T 3ibv_A 288 STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKES 367 (980)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcc
Confidence 3566665544444433321 111 111 1 11136889999999998888877776665554421
Q ss_pred -----ChHHHHHHHHcCChHHHHHhccCC-----------C-----HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHH
Q psy12594 156 -----NKHFAERIVQCGALPPLVQILASP-----------Q-----LSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214 (542)
Q Consensus 156 -----~~~~~~~i~~~g~i~~L~~ll~~~-----------~-----~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L 214 (542)
.+..+..+. .+++.+++-++-+ + .+.|......+..++.-+++......-.-+.+.+
T Consensus 368 ~~~~~~~~~~~~l~--~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l 445 (980)
T 3ibv_A 368 SSKELSASLKEFLK--SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSL 445 (980)
T ss_dssp TSCCCCHHHHHHHH--HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHH--HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 111111111 1234444444321 1 2455555534444444334333221101111233
Q ss_pred HHhhc---CCCHHHHHHHHHHHHHHhcCChhhHHHH-----HhhchHH-HHHhhc-----CCChhHHHHHHHHHHHHhcC
Q psy12594 215 IKALN---NDEVNVKADAFLCLADIAKDSPSLASTI-----ADGATTL-AVEHLT-----YPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 215 ~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~~~i~-L~~lL~-----~~~~~v~~~a~~~L~~L~~~ 280 (542)
...+. +.+...++.++.+|+.+++.-......+ .-..+++ +..++. .+.+.++..+++++...+..
T Consensus 446 ~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~ 525 (980)
T 3ibv_A 446 STAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF 525 (980)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33442 2357789999999999988643211111 0123456 666655 45789999999999988754
Q ss_pred ChHHHHHHHhcCCHHHHHH------hhhcCCccchHHHHHHHhHhhcCChH
Q psy12594 281 NLRLANLVVLAGGLDGLLR------LIDCNGGYNSLPAIMALGYMSAQSEQ 325 (542)
Q Consensus 281 ~~~~~~~~~~~~~i~~Lv~------lL~~~~~~~~~~a~~~L~~l~~~~~~ 325 (542)
-.. ....++.++. .+.++++.++..|+.++.+++.....
T Consensus 526 ~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 526 FDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp GGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred Hhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 321 1234444444 44456778999999999999875543
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.75 E-value=0.04 Score=61.65 Aligned_cols=217 Identities=16% Similarity=0.188 Sum_probs=119.3
Q ss_pred hhHHHHHHHHH----HHHHHHHHHHHHhcCCCCchHHHHhCCchHHHHhhhc-CCChHHHHHHHHHHHHhHccCC----h
Q psy12594 4 KSVKNSIDHYQ----RARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKH----V 74 (542)
Q Consensus 4 ~~~~~~~~~~~----~~r~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~----~ 74 (542)
.++.|.+.... ..|..+-+.|..+-.+| ++...+..++. +.++.+|..|+..|.+...... +
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~ 86 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPN 86 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCH
Confidence 34555554432 24666777777665554 34455555653 5688999999999999874321 3
Q ss_pred HHHHHHHhcCcHHHHHHhhccC-----CHHHHHHHHHHHHHHhcCC-hhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHH
Q psy12594 75 DIRQEVLERNLVALVLKDLTKQ-----NKHYKKTALHMLTCVAQQD-ERCAGLIEDKDLDSIISSLHDFDPDTRANAALA 148 (542)
Q Consensus 75 ~~~~~i~~~~~l~~Lv~~L~~~-----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~ 148 (542)
+.+..+ +...+..+...-..+ ++.++...+.++..++... ++.. .+.++.+++.++ .++..++.+..+
T Consensus 87 ~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W----p~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 87 DHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW----PEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp HHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHHc-cChHHHHHHHHH
Confidence 333333 323333333322111 4677888888888877542 1111 246778888886 556666777777
Q ss_pred HHHhhcCCh--------HHH-----HHHHHc--CChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChH
Q psy12594 149 LGGLAKDNK--------HFA-----ERIVQC--GALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212 (542)
Q Consensus 149 L~~l~~~~~--------~~~-----~~i~~~--g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~ 212 (542)
|..++..-. ..+ ..+... .+++.+.+++.. .+..++..++.++.+....-+ ...+.+...++
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~ 238 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHH
Confidence 777663111 001 112211 123334444543 357788899999987665332 12233344555
Q ss_pred HHHH-hhcCCCHHHHHHHHHHHHHHhcC
Q psy12594 213 LLIK-ALNNDEVNVKADAFLCLADIAKD 239 (542)
Q Consensus 213 ~L~~-ll~~~~~~~~~~a~~~L~~l~~~ 239 (542)
.+.. ++ .+++++..++.+|..+...
T Consensus 239 ~l~~~~l--~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM--TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH--HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC--CCHhHHHHHHHHHHHHHhC
Confidence 5552 22 2566666666666666543
No 98
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.59 E-value=0.0001 Score=66.69 Aligned_cols=67 Identities=24% Similarity=0.094 Sum_probs=37.8
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcC
Q psy12594 214 LIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAG 292 (542)
Q Consensus 214 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 292 (542)
+..++.++++.+|..++..+ ..+ |..++.+++..|+..++..+.
T Consensus 175 l~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred HHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence 44555666666666665432 124 556666777777776666532
Q ss_pred CHHHHHHhhhcCCccchHHHHHHHh
Q psy12594 293 GLDGLLRLIDCNGGYNSLPAIMALG 317 (542)
Q Consensus 293 ~i~~Lv~lL~~~~~~~~~~a~~~L~ 317 (542)
.+.|..+ .++++.|+..+...||
T Consensus 220 -~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 -LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 2344444 6667777776665443
No 99
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.44 E-value=0.021 Score=50.63 Aligned_cols=182 Identities=16% Similarity=0.232 Sum_probs=127.6
Q ss_pred HHH-HHHHHHHhcCCCCchHHHHhCCchHHHHhhhcCCC-----hHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHH
Q psy12594 17 RLC-FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKV-----PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVL 90 (542)
Q Consensus 17 r~~-~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~s~~-----~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv 90 (542)
|.+ ++..+-.++.||+.|..|.++.+--.|-++|...+ +..|..++.+++.+....+++....+...+.+|..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 444 44555667789999999999999888888886432 478999999999999666688889999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q psy12594 91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALP 170 (542)
Q Consensus 91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 170 (542)
+.+..+++-.|.-|.+++.++..++.....+ . ..++-......+|.++..
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~Yi---------C-----~t~eRF~av~~vL~~mV~---------------- 201 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYI---------C-----QTYERFSHVAMILGKMVL---------------- 201 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHH---------T-----SSHHHHHHHHHHHHHHHH----------------
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHH---------H-----ccHHHHHHHHHHHHHHHH----------------
Confidence 9999999999999999999987655322221 1 122222333334444332
Q ss_pred HHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh-------CCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594 171 PLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD-------CDVIPLLIKALNNDEVNVKADAFLCLADI 236 (542)
Q Consensus 171 ~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~~~~~a~~~L~~l 236 (542)
.+.+++++.+..+..++-..|+. ++..+..+.. .|. +..++ ..|+.+++.-...+.|+
T Consensus 202 ---~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~t---f~~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 202 ---QLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTT---FAQVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp ---HTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSST---THHHH-TSCHHHHHHHHHHHHHS
T ss_pred ---HHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChH---HHHHH-hcCHHHHHHHHHHHHhc
Confidence 24466778888889999998888 6766665542 122 22222 24667777666666665
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.35 E-value=0.00046 Score=67.98 Aligned_cols=240 Identities=14% Similarity=0.101 Sum_probs=150.8
Q ss_pred cHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh-hhhHh--hcCChHHHHhhh---------cCCC-HHHHHHHHHHHHH
Q psy12594 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDER-CAGLI--EDKDLDSIISSL---------HDFD-PDTRANAALALGG 151 (542)
Q Consensus 85 ~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~--~~g~v~~Lv~lL---------~~~~-~~~~~~a~~~L~~ 151 (542)
....|+.-|-++..++|..|+..|+.+...... ..... .....-.++..+ .+.- .-||+.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 345556566678999999999999997643211 11111 112222222222 1111 4699999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHH
Q psy12594 152 LAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL 231 (542)
Q Consensus 152 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 231 (542)
+ ..-+.- ..++..|+..+..+..+++..++-.|..+.. .... . .++++.++..|.+.+++++..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~-L-d~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED-K-DGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC-H-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH-H-HHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 544432 3445555555577789999999999998821 1111 1 355678888889999999999999
Q ss_pred HHHHHhcCChhhHHHHHhhchHH-HHHhhcCCC--hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccc
Q psy12594 232 CLADIAKDSPSLASTIADGATTL-AVEHLTYPH--GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYN 308 (542)
Q Consensus 232 ~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~ 308 (542)
+|..++ .++... .++. +.+.|.+-| ..-.......|..|+.+++... .....+|+|..++++.-.+|
T Consensus 322 tLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~---~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 322 LLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS---IPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC---CCSGGGGGTGGGGTCSSHHH
T ss_pred Hhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc---cChHHHHHHHhhhcCCcHHH
Confidence 999998 222222 4555 666666542 2233445566777776554211 12478999999999999999
Q ss_pred hHHHHHHHhHhhcCChHHHHHHHhhCchHHHH-HhhcCCChhhHHHHHHHHH
Q psy12594 309 SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQ-TILQCPHKEQLQVAAAWTL 359 (542)
Q Consensus 309 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~~v~~~a~~~L 359 (542)
|.+++.++..+. +. .+++.+. .++-. ++++++..+..+-
T Consensus 392 R~AVL~TL~tfL--~~---------~~LRLIFQNILLE-~neeIl~lS~~VW 431 (800)
T 3oc3_A 392 RTSILNMVKNLS--EE---------SIDFLVAEVVLIE-EKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHTTTCC--CH---------HHHHHHHHHHHHC-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hh---------hHHHHHHHHHHhC-CcHHHHHHHHHHH
Confidence 999999998876 11 2223332 33333 3457776665554
No 101
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.33 E-value=0.015 Score=51.58 Aligned_cols=218 Identities=15% Similarity=0.219 Sum_probs=137.9
Q ss_pred ChHHHHHHHHHHHHhHccCC-hHHHHHHHhc-CcHHHHHHh-------hccCC-----HHHHHHHHHHHHHHhcCChhhh
Q psy12594 54 VPSIQHAALATLGKLMCAKH-VDIRQEVLER-NLVALVLKD-------LTKQN-----KHYKKTALHMLTCVAQQDERCA 119 (542)
Q Consensus 54 ~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~-~~l~~Lv~~-------L~~~~-----~~~~~~a~~~L~~l~~~~~~~~ 119 (542)
+|+.|..|+..|++=- +. ++....+..+ |.+..|++= +..+. ..-...|+..|..++++++...
T Consensus 14 ~p~~Re~AL~eLsk~R--e~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~ 91 (268)
T 2fv2_A 14 SPETRENALLELSKKR--ESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRS 91 (268)
T ss_dssp STTTHHHHHHHHHHHT--TTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHH
T ss_pred CchhHHHHHHHHHHhh--hccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhh
Confidence 4556777777776655 43 4444444333 555555441 22111 1223455566677787664444
Q ss_pred hHhhcCChHHHHhhhcCCC-----HHHHHHHHHHHHHhh-cCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHH
Q psy12594 120 GLIEDKDLDSIISSLHDFD-----PDTRANAALALGGLA-KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG 193 (542)
Q Consensus 120 ~~~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~n 193 (542)
.+.+....-.|..+|+..+ ..+|..++.+++.+. .++++....+.+.+++|..++.++.++.-.+..|..++..
T Consensus 92 ~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqK 171 (268)
T 2fv2_A 92 AFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK 171 (268)
T ss_dssp HHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4888888777777876554 578899999999988 4567788888999999999999999999999999999998
Q ss_pred HhcCCHHHHHHhhh--------CCChH-HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH--H----HHh
Q psy12594 194 IVKHSPELAESASD--------CDVIP-LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL--A----VEH 258 (542)
Q Consensus 194 l~~~~~~~~~~~~~--------~~~i~-~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~--L----~~l 258 (542)
|-.++ .....+.. ..++. .+..+.+++++.+..+++++...|+.+. ..++.+.. .+| | +..
T Consensus 172 IL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL~~--~LP~~Lrd~tf~~ 247 (268)
T 2fv2_A 172 ILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREALRQ--CLPDQLKDTTFAQ 247 (268)
T ss_dssp HHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHHHH--HSCGGGTSSTTHH
T ss_pred Hhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHHHH--hCcHHhhChHHHH
Confidence 88743 23222211 01122 2233445779999999999999999874 45554432 111 1 111
Q ss_pred hcCCChhHHHHHHHHHHHH
Q psy12594 259 LTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 259 L~~~~~~v~~~a~~~L~~L 277 (542)
+-.+|+.+++.-...+.|+
T Consensus 248 ~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 248 VLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHTSCHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHhc
Confidence 1234566666655555554
No 102
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.26 E-value=0.00045 Score=62.47 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=80.8
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC
Q psy12594 129 SIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC 208 (542)
Q Consensus 129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~ 208 (542)
.|..+++++++.+|..++..+ . .+.+..+++++++.+|..++.. +.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~------------- 147 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP------------- 147 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC-------------
T ss_pred HHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC-------------
Confidence 455555666666665555421 0 1234455566666666666542 11
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy12594 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANL 287 (542)
Q Consensus 209 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 287 (542)
.+.+..+++++++.+|..++..+ ..+ +..++++++..|+..++..+
T Consensus 148 --~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~d~~VR~aaa~~l------------- 194 (244)
T 1lrv_A 148 --PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDPEPEVRRIVASRL------------- 194 (244)
T ss_dssp --GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCSSHHHHHHHHHHC-------------
T ss_pred --HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCCCHHHHHHHHHhC-------------
Confidence 12344556666777777666531 113 45666777788887777542
Q ss_pred HHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHH
Q psy12594 288 VVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTL 359 (542)
Q Consensus 288 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L 359 (542)
..+.|..++.++++.++..++..++ .+.|..+ .. ++..|+..+...|
T Consensus 195 -----~~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D-~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RGDDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DE-PDPEVRLAIAGRL 241 (244)
T ss_dssp -----CGGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CC-CCHHHHHHHHCCC
T ss_pred -----CHHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cC-CCHHHHHHHHHHh
Confidence 2245677788888888888887654 2334444 44 5678888776554
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.26 E-value=0.023 Score=52.82 Aligned_cols=212 Identities=11% Similarity=0.168 Sum_probs=154.6
Q ss_pred HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh----hHHHHHh-hchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS----LASTIAD-GATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
.+...+.+..|+..+..-+-+.|..+..++.++.+.... ..+.+.. ..++. |+.... ++++--.+-..|+.+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHH
Confidence 444567888899999988999999999999999886542 2233332 23333 333333 566767777778877
Q ss_pred hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhC---chHHHHHhhcCCChhhHHHH
Q psy12594 278 CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ---GVGSLQTILQCPHKEQLQVA 354 (542)
Q Consensus 278 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v~~~ 354 (542)
.++ +..++.+...+.+..+..++..++=++...|..++..+-.........++..+ +...+-.++.+++ --++..
T Consensus 151 ir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N-YVTkRQ 228 (341)
T 1upk_A 151 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN-YVTKRQ 228 (341)
T ss_dssp HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-HHHHHH
T ss_pred HHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc-chhHHH
Confidence 764 44555577778888999999999999999999999998877777666666543 5666778888854 578999
Q ss_pred HHHHHHHhhcCCh--HH-HHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhc
Q psy12594 355 AAWTLGQIGKHSV--DN-VTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLL 421 (542)
Q Consensus 355 a~~~L~~l~~~~~--~~-~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~ 421 (542)
++..|+.+..... .. .+.+-+...+..++.+|++. +..+|.+|.....=++.+..--+++..+|.
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~ 296 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANPNKTQPILDILL 296 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeCCCCChHHHHHHH
Confidence 9999999976532 22 22233456889999999987 579999999998888877655666666654
No 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.21 E-value=0.0015 Score=64.46 Aligned_cols=241 Identities=13% Similarity=0.125 Sum_probs=150.7
Q ss_pred ChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhc------------cCCC-HhHHHHHHHHHH
Q psy12594 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL------------ASPQ-LSLKHAAAFALD 192 (542)
Q Consensus 126 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll------------~~~~-~~~~~~a~~~L~ 192 (542)
..+.|+.-|-++..++|+-|+.+|..+..............+- ...++++ .+.- .++|+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 5667777788889999999999999987432210000000111 2233322 1111 689999999999
Q ss_pred HHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHH
Q psy12594 193 GIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAA 271 (542)
Q Consensus 193 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~ 271 (542)
.+ .+-+.. ..++..++..+..+..+++..++-.|.++. +.... -.++++ ++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK----EFVED--KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----GGCCC--HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH----HHHHH--HHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 655432 233444444557788999999999999981 11111 246788 88999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc-cc-hHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChh
Q psy12594 272 TLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG-YN-SLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE 349 (542)
Q Consensus 272 ~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 349 (542)
.+|.-++ .++... .++..+-..|.+.++ +. ....+..|+.|+..... .-.....+|.|..++++. -.
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cH
Confidence 9999888 222222 223345555555332 22 23334466666654431 112237889999999995 46
Q ss_pred hHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHH
Q psy12594 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNAL 403 (542)
Q Consensus 350 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL 403 (542)
.||.+++.++..+. ... ++..+.+-+--+. +++++..+..+.
T Consensus 390 SVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 99999999998885 222 3344444333232 568888765555
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.021 Score=52.93 Aligned_cols=186 Identities=13% Similarity=0.045 Sum_probs=124.4
Q ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCChhhh--h--Hh-hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCCh-----H
Q psy12594 89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCA--G--LI-EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNK-----H 158 (542)
Q Consensus 89 Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~--~--~~-~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----~ 158 (542)
+-+.|.+.+...|..++.-|..+....+... . +. -....+.+-..+.+.+..++..++.++..++.... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5677889999999999999988765432211 1 11 12356677788889999999999999988874211 1
Q ss_pred HHHHHHHcCChHHHHH-hccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q psy12594 159 FAERIVQCGALPPLVQ-ILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237 (542)
Q Consensus 159 ~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 237 (542)
......-..+++.|+. .+.+..+.++..+..++..++.... .... +++.+...+.+.++.++..++..|..+.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQ-----SVELVIPFFEKKLPKLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 1111122244677775 4788888899998888887765321 1111 2356667788889999999988888876
Q ss_pred cCC-hh-hHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC
Q psy12594 238 KDS-PS-LASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH 280 (542)
Q Consensus 238 ~~~-~~-~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~ 280 (542)
... .. ......-..+++ +..++.+.++.||..|..++..+...
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 431 11 101111124677 88899999999999999999888754
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.08 E-value=0.012 Score=51.82 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=103.0
Q ss_pred hHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-hccCCCHhHHHHHHHHHHHHhc-CCHHHHHH
Q psy12594 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ-ILASPQLSLKHAAAFALDGIVK-HSPELAES 204 (542)
Q Consensus 127 v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~nl~~-~~~~~~~~ 204 (542)
++....+.+++..++|..|+..|+.+ ...+. .++.+.. +..+++-.+++.++.++..++. .+++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~---------~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE---------ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH---------HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH---------HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 34455556667789999999988877 32222 2566665 5566779999999999999985 3442
Q ss_pred hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594 205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
..++.+.....+++..+|+.|...+.--+.. +... ..-..+++ |-.+..+++.-|+..+.+.|..+++..|+
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 3678899999999999999998876543332 1111 11123566 55666677999999999999999999999
Q ss_pred HHHHHHh
Q psy12594 284 LANLVVL 290 (542)
Q Consensus 284 ~~~~~~~ 290 (542)
....+++
T Consensus 212 ~V~~~~~ 218 (240)
T 3l9t_A 212 LVKIELK 218 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.00 E-value=0.087 Score=58.17 Aligned_cols=138 Identities=9% Similarity=0.015 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHhcCChhh-hhHhhcCChHHHHhhhcC-----CCHHHHHHHHHHHHHhhcC---ChHHHHHHHHc
Q psy12594 96 QNKHYKKTALHMLTCVAQQDERC-AGLIEDKDLDSIISSLHD-----FDPDTRANAALALGGLAKD---NKHFAERIVQC 166 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~---~~~~~~~i~~~ 166 (542)
.+...+..++++++.++.+..+. ..-.-..+++.|+.++.+ ..+.++..++|+++..+.- ++.+-+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~----- 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR----- 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence 56888999999999998764332 222233567788888763 2245666788999987742 233222
Q ss_pred CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh------CCChHHHH----HhhcCCCHHHHHHHHHHHHHH
Q psy12594 167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD------CDVIPLLI----KALNNDEVNVKADAFLCLADI 236 (542)
Q Consensus 167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~------~~~i~~L~----~ll~~~~~~~~~~a~~~L~~l 236 (542)
.++..|+..+.++++.++..|++++.+||.. ++..+.. ...++.++ ..+..-+++-+..+..+++.+
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2356677778778899999999999999983 4444432 12334333 333345777778899999999
Q ss_pred hcCCh
Q psy12594 237 AKDSP 241 (542)
Q Consensus 237 ~~~~~ 241 (542)
....+
T Consensus 617 i~~~~ 621 (1023)
T 4hat_C 617 ISEER 621 (1023)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 88764
No 108
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.02 Score=53.06 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCCCCch---H-HHHh-CCchHHHHhhhcCCChHHHHHHHHHHHHhHccCChH----HHHHHHhcCc
Q psy12594 15 RARLCFVQTMSAFADKPSTI---H-FLKD-LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVD----IRQEVLERNL 85 (542)
Q Consensus 15 ~~r~~~~~~l~~l~~~~~~~---~-~l~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~----~~~~i~~~~~ 85 (542)
+.|..+++.+..+..+.... . .+.. ....+.+...+.+.+..++..++.++..++...... ......-..+
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 103 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTW 103 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH
Confidence 35777777776665432111 1 1111 234566777888999999999999999998322211 1112223346
Q ss_pred HHHHHH-hhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC--ChHH-HH
Q psy12594 86 VALVLK-DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKD--NKHF-AE 161 (542)
Q Consensus 86 l~~Lv~-~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~-~~ 161 (542)
++.|+. .+.+..+.++..+..++..++....... .+++.+...+++.+|.++..++..|..+... .... ..
T Consensus 104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k 178 (278)
T 4ffb_C 104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQ 178 (278)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCch
Confidence 777775 4778889999988888877764332111 1356777888999999999999888887632 1100 11
Q ss_pred HHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~ 197 (542)
..+ ..+++.+..++.+.++.+|..|..++..+...
T Consensus 179 ~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 179 TFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred hHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 111 12366788889999999999999999988764
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.93 E-value=0.71 Score=50.99 Aligned_cols=381 Identities=13% Similarity=0.141 Sum_probs=194.9
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCC--h------------HHHHHHHhcCcHHHHHHh----hc-cCCHHHH
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKH--V------------DIRQEVLERNLVALVLKD----LT-KQNKHYK 101 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~--~------------~~~~~i~~~~~l~~Lv~~----L~-~~~~~~~ 101 (542)
+.++-++.++.+ ++......+..|..|. +. + ..++.+.. .++.++.+ |. ..++.+.
T Consensus 150 ~fi~dLv~~~~~-~~~~~~~~L~IL~~L~--EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~~~~~lv 224 (1073)
T 3gjx_A 150 TFISDIVGASRT-SESLCQNNMVILKLLS--EEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENSQNAPLV 224 (1073)
T ss_dssp THHHHHHHHHHH-CHHHHHHHHHHHHHHH--HHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHH--HHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhcccCCHHHH
Confidence 456666666643 3445556677777776 32 0 11223333 24455544 33 3678888
Q ss_pred HHHHHHHHHHhcCChhhhhHhhcCChHHH-HhhhcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHc--CChHHHHHhc-
Q psy12594 102 KTALHMLTCVAQQDERCAGLIEDKDLDSI-ISSLHDFDPDTRANAALALGGLAKDN-KHFAERIVQC--GALPPLVQIL- 176 (542)
Q Consensus 102 ~~a~~~L~~l~~~~~~~~~~~~~g~v~~L-v~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~i~~~--g~i~~L~~ll- 176 (542)
..++.+|..+.+=- +...+++.+.++.+ ..+| .++.++..|+.||..+.... +.+.+.+..- +++..+-.++
T Consensus 225 ~~~L~~L~~~~sWI-~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp 301 (1073)
T 3gjx_A 225 HATLETLLRFLNWI-PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLP 301 (1073)
T ss_dssp HHHHHHHHHHTTTS-CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhc-CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 88888988876433 23336777888887 4666 46789999999999988542 2222222110 1111121222
Q ss_pred ------------cCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhC-C-------ChHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy12594 177 ------------ASPQLSLKHAAAFALDGIVKHSPELAESASDC-D-------VIPLLIKALNNDEVNVKADAFLCLADI 236 (542)
Q Consensus 177 ------------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~-~-------~i~~L~~ll~~~~~~~~~~a~~~L~~l 236 (542)
.+.+.+....-+..+..+.... ...+... + ++..++.+-..++.++...+...-..|
T Consensus 302 ~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~---~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L 378 (1073)
T 3gjx_A 302 LNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH---GQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHL 378 (1073)
T ss_dssp TTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH---HHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH---HHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 1122445455555666555421 1111111 1 223344444566788777766554444
Q ss_pred hcC----Ch-----------------hhHHHHHh---hchHH-HHHhhcCCCh----------------------hHHHH
Q psy12594 237 AKD----SP-----------------SLASTIAD---GATTL-AVEHLTYPHG----------------------LVQKN 269 (542)
Q Consensus 237 ~~~----~~-----------------~~~~~~~~---~~~i~-L~~lL~~~~~----------------------~v~~~ 269 (542)
... .+ ..+..+.. ..+.. ++..+..+++ .+...
T Consensus 379 ~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~ 458 (1073)
T 3gjx_A 379 AAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKN 458 (1073)
T ss_dssp HHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHH
T ss_pred HHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHH
Confidence 321 10 01111111 12233 3444433310 01112
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcC--CccchHHHHHHHhHhhcCChHH-HHHHHhhCchHHHHHhhcCC
Q psy12594 270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN--GGYNSLPAIMALGYMSAQSEQI-AEQIIELQGVGSLQTILQCP 346 (542)
Q Consensus 270 a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~ 346 (542)
.-.+|..++.-.+..... -.++.+-+.+... ++....++++++|.++..-.+. ...++ ..+++.|+.+..+.
T Consensus 459 mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L-p~vi~~Ll~L~e~~ 533 (1073)
T 3gjx_A 459 MRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL-VTVIKDLLGLCEQK 533 (1073)
T ss_dssp HHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH-HHHHHHHhcccccc
Confidence 222333333222221111 1223344333433 4568899999999997543321 21222 24677777777543
Q ss_pred C----hhhHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC-------
Q psy12594 347 H----KEQLQVAAAWTLGQIGK---HSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN------- 412 (542)
Q Consensus 347 ~----~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~------- 412 (542)
. ...++...+|++|..+. .+++.... .+..|+..+.+. ++.|+..|+.|+..+.++|..
T Consensus 534 ~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~--~~~vq~aA~~af~~i~~~C~~~lv~~~~ 606 (1073)
T 3gjx_A 534 RGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHET--HDGVQDMACDTFIKIAQKCRRHFVQVQV 606 (1073)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCC--STTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred cccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2 23355566789988743 23333322 345566666654 469999999999999887642
Q ss_pred ---chhhHHhhcC------CCCHHHHHHHHHHHHhhCCCCh
Q psy12594 413 ---PKELEQMLLG------NVSEELLASILCAFAKILPCDP 444 (542)
Q Consensus 413 ---i~~L~~lL~~------~~~~~v~~~~l~~l~~ll~~~~ 444 (542)
.|.+..+++. .-+++-.....++++.++..-+
T Consensus 607 ~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p 647 (1073)
T 3gjx_A 607 GEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQT 647 (1073)
T ss_dssp TCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Confidence 2344445541 2245555555666666655543
No 110
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.83 E-value=0.008 Score=54.62 Aligned_cols=184 Identities=12% Similarity=0.043 Sum_probs=122.9
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhh-
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAG- 120 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~- 120 (542)
+-+-+...|-+.|...+..|+..|..... ..++......+. .++.+.-.+.+.|..+...++.+|..+...-.+...
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~-~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLAD-TSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHH-HCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhh-hChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44566777778888889889888888772 122221111110 233333233467899998988888886422111101
Q ss_pred Hh---hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC
Q psy12594 121 LI---EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197 (542)
Q Consensus 121 ~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~ 197 (542)
+. ..-.+|.|+.-+.+....+|..+-.++..+..-.+. ..+++.++..+++.+...|..++..+..+...
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 11 124689999999999899998888777666531111 12367788888999999999999999888652
Q ss_pred CHHHHHHhhhCCCh---HHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q psy12594 198 SPELAESASDCDVI---PLLIKALNNDEVNVKADAFLCLADIAKD 239 (542)
Q Consensus 198 ~~~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 239 (542)
. ... ....+ +.+.+++.++|..+|..|..++..+-.+
T Consensus 198 ~--G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 198 A--GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp H--CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred c--CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1 111 23468 9999999999999999999998876543
No 111
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.79 E-value=0.33 Score=45.08 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=142.2
Q ss_pred HHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHH----HHHHhh-hCCChHHHHHhhcCCCHHHHHHHHHHHHH
Q psy12594 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE----LAESAS-DCDVIPLLIKALNNDEVNVKADAFLCLAD 235 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~----~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~ 235 (542)
+.+...+.+..|+..|..-+-+.|..+..++.++.+.... ....+. ...++..|+.-.. ++++.-.+-..|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 4555667889999999988889999999999999875532 222222 1223333443333 44555555566766
Q ss_pred HhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhc---CCHHHHHHhhhcCCccchHH
Q psy12594 236 IAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLA---GGLDGLLRLIDCNGGYNSLP 311 (542)
Q Consensus 236 l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~---~~i~~Lv~lL~~~~~~~~~~ 311 (542)
..++. .+...+.....+- +......++-++...|..++..+-............. ..+...-.+|.+++.-.+..
T Consensus 150 cir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 66665 4777777777777 9999999999999999999998755443333333322 35777888999999999999
Q ss_pred HHHHHhHhhcCCh--HHH-HHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcC
Q psy12594 312 AIMALGYMSAQSE--QIA-EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365 (542)
Q Consensus 312 a~~~L~~l~~~~~--~~~-~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 365 (542)
++..||.+..... ... ..+-+..-+..++.+|++.+ ..++.+|-..+--++++
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeC
Confidence 9999999976533 222 33444577889999999965 58999999888777654
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.74 E-value=0.13 Score=50.09 Aligned_cols=256 Identities=15% Similarity=0.074 Sum_probs=149.5
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q psy12594 88 LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG 167 (542)
Q Consensus 88 ~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g 167 (542)
.++... .+++..+..|+..+.+...+-|+... .++..++.+..++|..+|..|++.|..+|.+ +....
T Consensus 33 ~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k----- 100 (507)
T 3u0r_A 33 VILDGV-KGGTKEKRLAAQFIPKFFKHFPELAD----SAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR----- 100 (507)
T ss_dssp HHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHH----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----
Confidence 344433 46799999999999999887777665 4678999999999999999999999999986 32333
Q ss_pred ChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHH
Q psy12594 168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKD-SPSLAST 246 (542)
Q Consensus 168 ~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~ 246 (542)
++..|+++|+.+++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..=... ..+....
T Consensus 101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~ 172 (507)
T 3u0r_A 101 VADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTK 172 (507)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccH
Confidence 367899999998877777777788888776664 3334444444446788999888777544332 1112222
Q ss_pred HHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCCHHHHHHh---hhcCCccc----hHHHHHHHh
Q psy12594 247 IADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLRLANLVVLAGGLDGLLRL---IDCNGGYN----SLPAIMALG 317 (542)
Q Consensus 247 ~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~i~~Lv~l---L~~~~~~~----~~~a~~~L~ 317 (542)
-.+.-++. +...|++-..+=......+|..+-.. .+...+.+++ .+.....+ +...|+.. ....-.++-
T Consensus 173 E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP 250 (507)
T 3u0r_A 173 EVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAVP 250 (507)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHHH
Confidence 33334455 66666555444444444555544322 2332222211 11111111 11122221 112222333
Q ss_pred Hhhc--CChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC
Q psy12594 318 YMSA--QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS 366 (542)
Q Consensus 318 ~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 366 (542)
..+. ++......+++ +++|.+-.+-.....+..+...++++..++...
T Consensus 251 ~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~ 300 (507)
T 3u0r_A 251 LFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC 300 (507)
T ss_dssp GCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC
T ss_pred HhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCC
Confidence 3333 23344444444 577765544333222347778888888887553
No 113
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.72 E-value=0.017 Score=52.39 Aligned_cols=178 Identities=11% Similarity=-0.010 Sum_probs=117.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC----CHHHHH
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH----SPELAE 203 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~----~~~~~~ 203 (542)
+.+...|-+.|..-+..++..|......++......++. +++.+.--+.+.+..+...++.+|..+... +.....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 445555666677777777777776654343211111111 233333334467888888888888876431 111111
Q ss_pred HhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-C
Q psy12594 204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-N 281 (542)
Q Consensus 204 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~ 281 (542)
.-. .-++|.|+.-+.++.+.+|..+-.++..++.-.+ -..+.+ ++.-+++.+...|..++..+..+... .
T Consensus 128 ~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 128 EEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 100 2356999999999999999999888877764322 124677 88888999999999999998888532 1
Q ss_pred hHHHHHHHhcCCH---HHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 282 LRLANLVVLAGGL---DGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 282 ~~~~~~~~~~~~i---~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
.. ....+ +.+..++.+.|..+|.+|+.++..+-
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11 13467 99999999999999999999887553
No 114
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.60 E-value=0.046 Score=60.74 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=107.1
Q ss_pred HHHHHHhhcc----CCHHHHHHHHHHHHHHh----cCChhhhh-HhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC
Q psy12594 86 VALVLKDLTK----QNKHYKKTALHMLTCVA----QQDERCAG-LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN 156 (542)
Q Consensus 86 l~~Lv~~L~~----~~~~~~~~a~~~L~~l~----~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 156 (542)
+..+..++.+ .++.++..++..++.+. ...+.... .+ ..+...+.+.+...+.+-+..++++|+|+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 3344445543 56777777777766654 22211111 11 1123334455566777788889999999975
Q ss_pred hHHHHHHHHcCChHHHHHhccC-------CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc--CCCHHHHH
Q psy12594 157 KHFAERIVQCGALPPLVQILAS-------PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN--NDEVNVKA 227 (542)
Q Consensus 157 ~~~~~~i~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~ 227 (542)
+. .++.|.+++.. ....++..|+++|.+++...|+... +.+.+++. ..++++|.
T Consensus 470 p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHH
Confidence 22 36677777642 1357889999999999986554332 45677774 45889999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhcCC
Q psy12594 228 DAFLCLADIAKDSPSLASTIADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCKHN 281 (542)
Q Consensus 228 ~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~~~ 281 (542)
.|+..|..- .|.. ..+. +...+.. ++..|...+...|.+++...
T Consensus 533 aA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 533 RSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 998887542 2221 2345 6666666 48999999999999999776
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.52 E-value=0.073 Score=46.87 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=96.5
Q ss_pred HhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHh-hhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCC
Q psy12594 91 KDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIIS-SLHDFDPDTRANAALALGGLAK-DNKHFAERIVQCGA 168 (542)
Q Consensus 91 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~-lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~ 168 (542)
.+..++..++|..|+..|+.+ ... ...++.+.. +-.+.+-.|++.++.++..++. ..++ ..
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--------~~ 140 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--------KA 140 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--------TT
T ss_pred HHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--------HH
Confidence 344567789999999988877 322 124566665 4456678999999999998884 3443 24
Q ss_pred hHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q psy12594 169 LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI 247 (542)
Q Consensus 169 i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 247 (542)
++.+....++++..+|+.|...+..-+.. +... .-..-+++.+-.+..+++..||....|.|..+++.+|+....+
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHH
Confidence 78889999999999999998877543331 1100 0001234666667778899999999999999999998655443
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.33 E-value=0.22 Score=55.25 Aligned_cols=176 Identities=14% Similarity=0.095 Sum_probs=111.7
Q ss_pred hHH-HHHhhcCC----ChhHHHHHHHHHHHHh----cCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcC
Q psy12594 252 TTL-AVEHLTYP----HGLVQKNAATLLRDMC----KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ 322 (542)
Q Consensus 252 ~i~-L~~lL~~~----~~~v~~~a~~~L~~L~----~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 322 (542)
.+. +..++.++ ++.++..+.-+++.|. .+.+......+ ......+.+.+...+...+..++++|||+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 445 66666653 5667777777666664 22211100000 11223344555666666788899999998542
Q ss_pred ChHHHHHHHhhCchHHHHHhhcC------CChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHH
Q psy12594 323 SEQIAEQIIELQGVGSLQTILQC------PHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLK 396 (542)
Q Consensus 323 ~~~~~~~~~~~~~l~~L~~ll~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~ 396 (542)
..++.|..++.. +....++.+|.++|.++....|...+ +.++.++.+...+.++|
T Consensus 471 -----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvR 531 (1056)
T 1lsh_A 471 -----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELR 531 (1056)
T ss_dssp -----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHH
T ss_pred -----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHH
Confidence 356666666642 11246889999999999877666444 66788887777788999
Q ss_pred HHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCCChhhh
Q psy12594 397 SKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVAR 447 (542)
Q Consensus 397 ~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~~~~~~ 447 (542)
..|+..|...--....+..+...+..+.+.+|...+...|.++.....+..
T Consensus 532 iaA~~~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~ 582 (1056)
T 1lsh_A 532 IRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF 582 (1056)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcch
Confidence 999998864311112245555555525677899999999999988774433
No 117
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.64 E-value=0.2 Score=46.64 Aligned_cols=133 Identities=11% Similarity=-0.056 Sum_probs=80.7
Q ss_pred HHHhhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHH-hcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHh
Q psy12594 255 AVEHLTYP-HGLVQKNAATLLRDMCKHNLRLANLVV-LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332 (542)
Q Consensus 255 L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 332 (542)
+...+... .+..+..++++++|+..+.......+. ...+++.+...+.+.+..++.++...+.|++.........-..
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~ 231 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK 231 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH
Confidence 44555443 566788999999999976654332221 1234555666666667789999999999987531110000011
Q ss_pred hCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHh
Q psy12594 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKIT 387 (542)
Q Consensus 333 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~ 387 (542)
..++..+..++....+.+....++.+||++...+++..+.....++-..+-....
T Consensus 232 ~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 232 AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence 1255666677776667788888999999998876654433333444444333333
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.60 E-value=0.13 Score=50.20 Aligned_cols=249 Identities=16% Similarity=0.102 Sum_probs=146.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHH
Q psy12594 136 DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLI 215 (542)
Q Consensus 136 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 215 (542)
.+++..+..|+..+.......|+.++.. +..++++..+++..+|..|...|-.+|.+ +....+ ..+|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV-----ADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHHH
Confidence 3468899999999999998899887775 67799999999999999999999999995 444444 48999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHHhcCC
Q psy12594 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKH-NLRLANLVVLAGG 293 (542)
Q Consensus 216 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~ 293 (542)
++|+..++.-...+-++|..+...++. +.+. +...+..+++.+|+.++..|..=... .++....-.+.-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 999998888888888888888776652 3455 66666667889999888877643322 1111011112223
Q ss_pred HHHHHHhhhcCCccchHHHHHHHhHhhc-CChHHHHHHHhhCchHHHHHhhc-----CCChhhHHHHHH----HHHHHhh
Q psy12594 294 LDGLLRLIDCNGGYNSLPAIMALGYMSA-QSEQIAEQIIELQGVGSLQTILQ-----CPHKEQLQVAAA----WTLGQIG 363 (542)
Q Consensus 294 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~-----~~~~~~v~~~a~----~~L~~l~ 363 (542)
+..+...|.+....--...+.+|..+-. ......+.+ ++.+.+... ...+.+...... .++--+.
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 4455566644443333333344444432 222223222 223333211 101222222222 2222222
Q ss_pred cC--ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCC
Q psy12594 364 KH--SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCE 411 (542)
Q Consensus 364 ~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~ 411 (542)
.+ +......+.+ .++|.+-. +......++.|..-..++..++..++
T Consensus 254 ~~v~StkFv~y~~~-kIlP~l~~-L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 254 KNVHSTRFVTYFCE-QVLPNLGT-LTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp TTBCCHHHHHHHHH-HTGGGTTC-CCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred cCCChHHHHHHHHH-hhccchhh-ccccccchHHHHHHHHHHHHHccCCC
Confidence 22 3344444444 37775433 32222233577777778887776665
No 119
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.54 E-value=0.46 Score=44.17 Aligned_cols=156 Identities=8% Similarity=-0.071 Sum_probs=89.9
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC----ChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG----ALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELA 202 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g----~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~ 202 (542)
..+.+++ ....+.+..++..++-+.. .+.....+.+.+ ++..+...+.+ ..+..+..++++++|+.. ++..+
T Consensus 106 ~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~ 182 (304)
T 3ebb_A 106 QILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQ 182 (304)
T ss_dssp HHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHH
T ss_pred HHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhH
Confidence 4444444 3333444445554444433 333333333221 12233444443 346779999999999998 55566
Q ss_pred HHhhhC--CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHh
Q psy12594 203 ESASDC--DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMC 278 (542)
Q Consensus 203 ~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~ 278 (542)
..+... .+++.+...+.+.+..++..++.++.|++.........-....++. +..++... |.+....++-+|++|.
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 655532 2344555555567889999999999999863210000001112444 45555443 8999999999999999
Q ss_pred cCChHHHH
Q psy12594 279 KHNLRLAN 286 (542)
Q Consensus 279 ~~~~~~~~ 286 (542)
..+.+..+
T Consensus 263 ~~~~~~~~ 270 (304)
T 3ebb_A 263 SDDSNAVQ 270 (304)
T ss_dssp TTCHHHHH
T ss_pred hCChhHHH
Confidence 76655444
No 120
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.25 E-value=0.45 Score=53.80 Aligned_cols=257 Identities=14% Similarity=0.134 Sum_probs=141.2
Q ss_pred cCCChHHHHHHHHHHHHhHccC----ChHHHHHHHhcCcHHHHHHhhc---cCCHHHHHHHHHHHHHHhcCC-hhhhhHh
Q psy12594 51 ADKVPSIQHAALATLGKLMCAK----HVDIRQEVLERNLVALVLKDLT---KQNKHYKKTALHMLTCVAQQD-ERCAGLI 122 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~----~~~~~~~i~~~~~l~~Lv~~L~---~~~~~~~~~a~~~L~~l~~~~-~~~~~~~ 122 (542)
.+.++.+|..|+..|.+..... .++.+..+ +...++.+..... ..++.++...+.++..++... ++..
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W--- 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW--- 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC---
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc---
Confidence 4567899999999999887332 13343333 3334444333211 145888888888888887542 1111
Q ss_pred hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcC-------ChHHH----HHHHHc--CChHHHHHhccC-----------
Q psy12594 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKD-------NKHFA----ERIVQC--GALPPLVQILAS----------- 178 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-------~~~~~----~~i~~~--g~i~~L~~ll~~----------- 178 (542)
.+.++.++++++. ++..++.++.+|..++.+ ....+ +.+.+. .+++.+.++++.
T Consensus 133 -p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~ 210 (1204)
T 3a6p_A 133 -PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTD 210 (1204)
T ss_dssp -TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 2466778888765 556677788888887642 11111 112211 122333333332
Q ss_pred --------CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--hHHH
Q psy12594 179 --------PQLSLKHAAAFALDGIVKHSPELAESASDCD--VIPLLIKALNNDEVNVKADAFLCLADIAKDSPS--LAST 246 (542)
Q Consensus 179 --------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~ 246 (542)
++..++..++.++.+...--+ ...+.+.. .++.+..++. +++++..|+.+|..+...... ....
T Consensus 211 ~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~ 286 (1204)
T 3a6p_A 211 TSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKP 286 (1204)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGG
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHH
Confidence 123466667777766554222 12233332 6677776665 567999999999999986522 1111
Q ss_pred HHh---hchHH-HHHhhc--------CCChhHHHHHHHHHHHHhcCChHHHHHHHh----------cCCHHHHHHhhhcC
Q psy12594 247 IAD---GATTL-AVEHLT--------YPHGLVQKNAATLLRDMCKHNLRLANLVVL----------AGGLDGLLRLIDCN 304 (542)
Q Consensus 247 ~~~---~~~i~-L~~lL~--------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~----------~~~i~~Lv~lL~~~ 304 (542)
+.. ...+. ++..+. +.+.++.+..+..+..+... ....+.+ .+.++.++.+..++
T Consensus 287 li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~ 363 (1204)
T 3a6p_A 287 LMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHP 363 (1204)
T ss_dssp GGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCc
Confidence 221 11233 444432 11467777888888777631 1111110 13467777778777
Q ss_pred CccchHHHHHHHhHhh
Q psy12594 305 GGYNSLPAIMALGYMS 320 (542)
Q Consensus 305 ~~~~~~~a~~~L~~l~ 320 (542)
+..+...++..-..+.
T Consensus 364 ~~~vs~~~l~fW~~ll 379 (1204)
T 3a6p_A 364 SQFLRSSTQMTWGALF 379 (1204)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHhHHHHHHHHHHHH
Confidence 6666666555444343
No 121
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.04 E-value=0.33 Score=44.99 Aligned_cols=287 Identities=14% Similarity=0.184 Sum_probs=164.4
Q ss_pred HHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhc-CCChhHHH
Q psy12594 191 LDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLT-YPHGLVQK 268 (542)
Q Consensus 191 L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~-~~~~~v~~ 268 (542)
|-|+-.++....+-++...++..+...+.-++.++.+..+..|...+....-+ ..--...+| ++..+. +++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~--~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA--KTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG--TSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh--hccccccchHHHHHhccCCCcceEE
Confidence 45666678888888999999999999999999999999999999987654311 112246788 777776 45899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCc-------cchH-------HHHHHHhHhh-------------c
Q psy12594 269 NAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGG-------YNSL-------PAIMALGYMS-------------A 321 (542)
Q Consensus 269 ~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-------~~~~-------~a~~~L~~l~-------------~ 321 (542)
...+.|+|...|.....+..+..++++.|...+....+ .-+. ++++++.|.. .
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 99999999999998777777788998888777654221 2333 4444444432 1
Q ss_pred CC--hHHHHHHHhhCchHHHHHhhcCCCh-----hhHHHHHHHHHHHhhcCCh---HHH----HHHHHcCChHHHHHHHh
Q psy12594 322 QS--EQIAEQIIELQGVGSLQTILQCPHK-----EQLQVAAAWTLGQIGKHSV---DNV----TALCEENVLSTLLSKIT 387 (542)
Q Consensus 322 ~~--~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~L~~l~~~~~---~~~----~~l~~~~~l~~L~~ll~ 387 (542)
+. ..+.-.+++.++++.|+..|.-+.- -++|...++...-+..... +.. ......+.+.++...+.
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~s 503 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYS 503 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHH
Confidence 11 1223346677888888888876431 2344444444333322110 100 11122345555544432
Q ss_pred c---CCCC---hHHH----HHHHHHHHHHHhhCCC----------chhhHHhhcC-CCCHHHHHHHHHHHHhhCCCChhh
Q psy12594 388 Q---TCVS---DNLK----SKCKNALNILIPKCEN----------PKELEQMLLG-NVSEELLASILCAFAKILPCDPVA 446 (542)
Q Consensus 388 ~---~~~~---~~v~----~~a~~aL~nl~~~~~~----------i~~L~~lL~~-~~~~~v~~~~l~~l~~ll~~~~~~ 446 (542)
- ...+ .+.| +.+...|..++++||. +..=..+|++ .-.+.....++..--+++...|-.
T Consensus 504 Wa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~ 583 (619)
T 3c2g_A 504 WVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTR 583 (619)
T ss_dssp HHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTH
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHHHHHHHHHHHHHHhCcch
Confidence 1 0011 1222 3455555556666542 2333345652 224566666666666666655432
Q ss_pred hhHH-HHhcchHHhhhcCCCCcHHHHHHHHhccCc
Q psy12594 447 RRSF-VTSHCLRKVQEIEPTPEIAPHLKTINACFP 480 (542)
Q Consensus 447 ~~~~-~~~g~~~~l~~l~~~~~~~~a~~~l~~~~~ 480 (542)
...- ...+-++.+.+- .|+++.++..-+-+-||
T Consensus 584 Ad~W~i~r~tle~l~NH-sNsDIa~aasSLL~rfP 617 (619)
T 3c2g_A 584 ADIWTIDRPMLEGLTNH-RNSDIAKAANSLLSRFP 617 (619)
T ss_dssp HHHSCCCHHHHHHHHTC-SSHHHHHHHHHHHTTSC
T ss_pred hccceechHHHHHHhcC-CCchHHHHHHHHHHhCC
Confidence 2110 112222222222 66777664444433344
No 122
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.30 E-value=0.48 Score=43.92 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=99.5
Q ss_pred HHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCChhhHHH
Q psy12594 274 LRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV 353 (542)
Q Consensus 274 L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~ 353 (542)
|.+|..|+.+...-+++.+++..+...+..++.++..+++..|...+.. ...+..-. ...+|.++..+.-++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t~L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKTPL-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTSCC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhccc-cccchHHHHHhccCCCcceEE
Confidence 4456668877777788999999999999999999999999988876543 22221111 156888888887767779999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCC----ChH-HHHHHHHHHHHHH
Q psy12594 354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCV----SDN-LKSKCKNALNILI 407 (542)
Q Consensus 354 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~----~~~-v~~~a~~aL~nl~ 407 (542)
.....|+|..++........+..|+++.|...+....+ .+. -|+.||..++|.+
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 99999999999888778888899999999998875433 222 3456777777763
No 123
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.19 E-value=8.4 Score=42.57 Aligned_cols=139 Identities=7% Similarity=0.040 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHHhcC-ChhhhhHhhcCChHHHHhhhcCC---C--HHHHHHHHHHHHHhhcC---ChHHHHHHHHc
Q psy12594 96 QNKHYKKTALHMLTCVAQQ-DERCAGLIEDKDLDSIISSLHDF---D--PDTRANAALALGGLAKD---NKHFAERIVQC 166 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~v~~Lv~lL~~~---~--~~~~~~a~~~L~~l~~~---~~~~~~~i~~~ 166 (542)
.+......++++++.++.. .++...-+-..+++.|+.+.... + +.++...+++++..++- ++++-+.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~---- 566 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT---- 566 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH----
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH----
Confidence 3578889999999999744 32222222224677777777544 1 33445456778776632 3332222
Q ss_pred CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh--CC----ChHHHHHhh----cCCCHHHHHHHHHHHHHH
Q psy12594 167 GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD--CD----VIPLLIKAL----NNDEVNVKADAFLCLADI 236 (542)
Q Consensus 167 g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~----~i~~L~~ll----~~~~~~~~~~a~~~L~~l 236 (542)
++..+++.+.++++.++..|+.++..++.. ++..++. .| .++.++..+ ..-+++-......+++.+
T Consensus 567 -vl~~L~~~m~~~~~~vq~aA~~af~~i~~~---C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~v 642 (1073)
T 3gjx_A 567 -VVNKLFEFMHETHDGVQDMACDTFIKIAQK---CRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYM 642 (1073)
T ss_dssp -HHHHHHHHTTCCSTTHHHHHHHHHHHHHHH---TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---HHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 366788888888899999999999999973 4444432 11 223333222 233566677777888888
Q ss_pred hcCChh
Q psy12594 237 AKDSPS 242 (542)
Q Consensus 237 ~~~~~~ 242 (542)
....+.
T Consensus 643 i~~~p~ 648 (1073)
T 3gjx_A 643 IGAQTD 648 (1073)
T ss_dssp HTTCCC
T ss_pred HHhCCC
Confidence 776553
No 124
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.90 E-value=5.7 Score=44.86 Aligned_cols=286 Identities=14% Similarity=0.056 Sum_probs=158.7
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhh--cCCCHHHHHHHHHHHHHhhcC-----ChHHHHHHHHcCC
Q psy12594 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL--HDFDPDTRANAALALGGLAKD-----NKHFAERIVQCGA 168 (542)
Q Consensus 96 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~i~~~g~ 168 (542)
.+...|..|-..|..+-... .++..+...| .+.++.+|..|+..|.+.... +++ .+..++..+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e-~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL-EKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH-HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHHH
Confidence 36778888888887775433 2344444433 345789999999999987632 233 333444444
Q ss_pred hHHHHHhccC---CCHhHHHHHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh---
Q psy12594 169 LPPLVQILAS---PQLSLKHAAAFALDGIVKHS-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP--- 241 (542)
Q Consensus 169 i~~L~~ll~~---~~~~~~~~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--- 241 (542)
+..+...... .+..++...+.++..|+..+ |+ --.+.++.++.++.. ++..++.++.+|..|+++..
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence 5555443221 35788888888999888742 11 124667888888865 55667888888888875310
Q ss_pred ---hhH-----HHHHh--hchHH-HHHhhcC-------------------CChhHHHHHHHHHHHHhcCChHHHHHHHhc
Q psy12594 242 ---SLA-----STIAD--GATTL-AVEHLTY-------------------PHGLVQKNAATLLRDMCKHNLRLANLVVLA 291 (542)
Q Consensus 242 ---~~~-----~~~~~--~~~i~-L~~lL~~-------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 291 (542)
..+ ..+.. ..+++ +..++.. .+..+...++.++.+....-+.. .+.+.
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~--~i~~~ 246 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS--HITAE 246 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH--HHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH--HHHhc
Confidence 011 11111 12333 3444432 12346666777776555433322 22232
Q ss_pred C--CHHHHHHhhhcCCccchHHHHHHHhHhhcCC--hHHHHHHHhh---CchHHHHHhhc-------CCChhhHHHHHHH
Q psy12594 292 G--GLDGLLRLIDCNGGYNSLPAIMALGYMSAQS--EQIAEQIIEL---QGVGSLQTILQ-------CPHKEQLQVAAAW 357 (542)
Q Consensus 292 ~--~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~---~~l~~L~~ll~-------~~~~~~v~~~a~~ 357 (542)
. .++.+..++. ++.++..|+.+|..+.... ++....++.. ..+..++.... .+.+.++.+..++
T Consensus 247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ 324 (1204)
T 3a6p_A 247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQ 324 (1204)
T ss_dssp TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHH
Confidence 2 5666666555 5678999999999998743 2222222211 11233444432 1112456666777
Q ss_pred HHHHhhcCChHHHHHHHH-----------cCChHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy12594 358 TLGQIGKHSVDNVTALCE-----------ENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407 (542)
Q Consensus 358 ~L~~l~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~ 407 (542)
.+..++. . ...+++ .+.++.++.++.++ +.++-..+......+.
T Consensus 325 ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~--~~~vs~~~l~fW~~ll 379 (1204)
T 3a6p_A 325 VLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHP--SQFLRSSTQMTWGALF 379 (1204)
T ss_dssp HHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCc--cHHhHHHHHHHHHHHH
Confidence 7777652 1 222222 13567777777765 4566666554333343
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.91 E-value=3.5 Score=39.67 Aligned_cols=149 Identities=11% Similarity=0.142 Sum_probs=98.1
Q ss_pred HHHHhCCchHHHHhhhc-----------CCChHHHHHHHHHHHHhHccCChHHHH-HHHhcCcHHHHHHhhccCCHHHHH
Q psy12594 35 HFLKDLNVVDLIVPLLA-----------DKVPSIQHAALATLGKLMCAKHVDIRQ-EVLERNLVALVLKDLTKQNKHYKK 102 (542)
Q Consensus 35 ~~l~~~g~i~~L~~lL~-----------s~~~~v~~~a~~~L~~l~~~~~~~~~~-~i~~~~~l~~Lv~~L~~~~~~~~~ 102 (542)
+.|. .+|+..|+..|. ..+...+..++.+|+.+. ++..... .+.....+..+...|.+.++.++.
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm--N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~ 180 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM--NNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 180 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT--SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh--cchhhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence 4555 678888888874 224578888999999999 8854444 444557889999999999999999
Q ss_pred HHHHHHHHHhcCCh--h-hhhHh----------hcCChHHHHhhhcC-CCHHHHHHHHHHHHHhhcCCh------HHHHH
Q psy12594 103 TALHMLTCVAQQDE--R-CAGLI----------EDKDLDSIISSLHD-FDPDTRANAALALGGLAKDNK------HFAER 162 (542)
Q Consensus 103 ~a~~~L~~l~~~~~--~-~~~~~----------~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~------~~~~~ 162 (542)
.++.+|..+|..+. . ...+. +..-+..++..|.+ .+.+.+..+...+-.+....+ ..+..
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 260 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSE 260 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999986553 1 22221 23457778888876 456666665555555554332 23455
Q ss_pred HHHcCChHHHHHhccC-CCHhHHHHH
Q psy12594 163 IVQCGALPPLVQILAS-PQLSLKHAA 187 (542)
Q Consensus 163 i~~~g~i~~L~~ll~~-~~~~~~~~a 187 (542)
+...|+.+.+-+ ++. .++.+..+.
T Consensus 261 f~~~Gl~~il~~-lr~~~~~~L~~Qi 285 (383)
T 3eg5_B 261 LMRLGLHQVLQE-LREIENEDMKVQL 285 (383)
T ss_dssp HHHTTHHHHHHH-HTTSCCHHHHHHH
T ss_pred HHHCChHHHHHH-HhcCCChhHHHHH
Confidence 566785555544 554 345554433
No 126
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.87 E-value=2 Score=38.18 Aligned_cols=152 Identities=11% Similarity=0.122 Sum_probs=95.7
Q ss_pred chHHHHhCCchHHHHhhhcC-----------CChHHHHHHHHHHHHhHccCChHHHHHHH-hcCcHHHHHHhhccCCHHH
Q psy12594 33 TIHFLKDLNVVDLIVPLLAD-----------KVPSIQHAALATLGKLMCAKHVDIRQEVL-ERNLVALVLKDLTKQNKHY 100 (542)
Q Consensus 33 ~~~~l~~~g~i~~L~~lL~s-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~i~-~~~~l~~Lv~~L~~~~~~~ 100 (542)
-.+.| ..+|+..|+.+|.. .+...+..++.+|+.+. +.......+. ..+.+..+...|.++++.+
T Consensus 36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm--n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM--NNKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT--SSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh--CChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 34455 46788878777742 13567888999999999 8855444444 4568889999999999999
Q ss_pred HHHHHHHHHHHhcCCh--h-hhhH----------hhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCCh------HHH
Q psy12594 101 KKTALHMLTCVAQQDE--R-CAGL----------IEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNK------HFA 160 (542)
Q Consensus 101 ~~~a~~~L~~l~~~~~--~-~~~~----------~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~------~~~ 160 (542)
+..++.+|..+|..+. . ...+ -+..-...+++.++.. +.+.+..+...+-.+....+ ..|
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 192 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 192 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999999886543 2 2222 1223566678777743 46666655554444443332 334
Q ss_pred HHHHHcCChHHHHHhccCCCHhHHHHH
Q psy12594 161 ERIVQCGALPPLVQILASPQLSLKHAA 187 (542)
Q Consensus 161 ~~i~~~g~i~~L~~ll~~~~~~~~~~a 187 (542)
..+...|+.+.+-++=...++.+..+.
T Consensus 193 ~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 193 SELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp HHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 555666755544444333445554443
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.15 E-value=6.7 Score=37.78 Aligned_cols=150 Identities=11% Similarity=0.120 Sum_probs=95.8
Q ss_pred hHHHHhCCchHHHHhhhcC-----------CChHHHHHHHHHHHHhHccCChHHHH-HHHhcCcHHHHHHhhccCCHHHH
Q psy12594 34 IHFLKDLNVVDLIVPLLAD-----------KVPSIQHAALATLGKLMCAKHVDIRQ-EVLERNLVALVLKDLTKQNKHYK 101 (542)
Q Consensus 34 ~~~l~~~g~i~~L~~lL~s-----------~~~~v~~~a~~~L~~l~~~~~~~~~~-~i~~~~~l~~Lv~~L~~~~~~~~ 101 (542)
...|. .+|+..|+..|.. .+...+..++.+|+.+. +...... .+.....+..+...|.+.++.++
T Consensus 41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm--N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r 117 (386)
T 2bnx_A 41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM--NNKFGIKTMLETEEGILLLVRAMDPAVPNMM 117 (386)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT--SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh--CCHHHHHHHHcCcHHHHHHHHHhCCCCchHH
Confidence 34443 5777777777641 13567888999999999 8844444 44455788999999999999999
Q ss_pred HHHHHHHHHHhcCCh--h-hhhH----------hhcCChHHHHhhhcCC-CHHHHHHHHHHHHHhhcCCh------HHHH
Q psy12594 102 KTALHMLTCVAQQDE--R-CAGL----------IEDKDLDSIISSLHDF-DPDTRANAALALGGLAKDNK------HFAE 161 (542)
Q Consensus 102 ~~a~~~L~~l~~~~~--~-~~~~----------~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~------~~~~ 161 (542)
..++.+|..+|..+. . ...+ .+..-+..++..+... +.+.+..+...+-.+....+ ..|.
T Consensus 118 ~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~ 197 (386)
T 2bnx_A 118 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 197 (386)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999886543 2 2222 1233566688888643 46666655555545554333 3455
Q ss_pred HHHHcCChHHHHHhccC-CCHhHHHHH
Q psy12594 162 RIVQCGALPPLVQILAS-PQLSLKHAA 187 (542)
Q Consensus 162 ~i~~~g~i~~L~~ll~~-~~~~~~~~a 187 (542)
.+...|+.+.+ .-++. .++.+....
T Consensus 198 Ef~~~GL~~il-~~Lr~~~~~~L~~Qi 223 (386)
T 2bnx_A 198 ELMRLGLHQVL-QELREIENEDMKVQL 223 (386)
T ss_dssp HHHHTTHHHHH-HHHTTCCCHHHHHHH
T ss_pred HHHHCChHHHH-HHHhccCChhHHHHH
Confidence 66677855554 44444 456555543
No 128
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.36 E-value=16 Score=35.12 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=105.5
Q ss_pred HHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChH
Q psy12594 61 ALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-----------QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLD 128 (542)
Q Consensus 61 a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~ 128 (542)
.+..|..-...........|. .+++..|+..|.. .+...+..++.+|..+......... +-....+.
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~ 165 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 165 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHH
Confidence 344444433223345556665 6778888888752 2347788899999999877666666 45567899
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHHhhcCCh-HH-HHHHH----------HcCChHHHHHhccC-CCHhHHHHHHHHHHHHh
Q psy12594 129 SIISSLHDFDPDTRANAALALGGLAKDNK-HF-AERIV----------QCGALPPLVQILAS-PQLSLKHAAAFALDGIV 195 (542)
Q Consensus 129 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~i~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~ 195 (542)
.++..+.+..+.++..++..|..++.... .. .+.++ +..-...++..++. .+.+.+..++..+-.+.
T Consensus 166 ~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li 245 (383)
T 3eg5_B 166 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 245 (383)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999998885442 11 22222 22446778888886 45777776666655555
Q ss_pred cCCH--H----HHHHhhhCCChHHHHHhhcCCCHHHHH
Q psy12594 196 KHSP--E----LAESASDCDVIPLLIKALNNDEVNVKA 227 (542)
Q Consensus 196 ~~~~--~----~~~~~~~~~~i~~L~~ll~~~~~~~~~ 227 (542)
...+ + .+..+...|..+.+-.+=...++++..
T Consensus 246 ~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 246 TPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp TTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 5332 2 233445566666666543334555443
No 129
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=88.07 E-value=14 Score=35.31 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=74.7
Q ss_pred CCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh--------
Q psy12594 208 CDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC-------- 278 (542)
Q Consensus 208 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~-------- 278 (542)
.++++.++.+..+.+.++|..++..|...+....+.. ..+++ |..+|.+.++.+.+.++.+..++-
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999888999999999999998886544332 35677 888888889999988887766653
Q ss_pred cCCh------HHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhh
Q psy12594 279 KHNL------RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320 (542)
Q Consensus 279 ~~~~------~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 320 (542)
.+.. .....+ ...-..++.++.+.+..++..++..+-.+.
T Consensus 137 ~~~~~~~~~e~~W~~m--~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMV--SAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHH--HHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHH--HHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 2221 111212 123446677777788888888888776654
No 130
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=87.88 E-value=14 Score=32.65 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=97.4
Q ss_pred hHHHHHHHhcCcHHHHHHhhcc----C-------CHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHH
Q psy12594 74 VDIRQEVLERNLVALVLKDLTK----Q-------NKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDT 141 (542)
Q Consensus 74 ~~~~~~i~~~~~l~~Lv~~L~~----~-------~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~ 141 (542)
....+.+ ..+++..|+..|.. . +...+..++.+|..+......... +...+.+..+...|.++++.+
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 4455555 45677777777652 1 346678889999999877666666 445678999999999999999
Q ss_pred HHHHHHHHHHhhcCCh-HH-HHHHH----------HcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCH--H----HH
Q psy12594 142 RANAALALGGLAKDNK-HF-AERIV----------QCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSP--E----LA 202 (542)
Q Consensus 142 ~~~a~~~L~~l~~~~~-~~-~~~i~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~--~----~~ 202 (542)
+..++..|..++..+. .. .+.++ +..-...+++.+++ .+.+.+..++..+-.+....+ + .+
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 192 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 192 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999988885332 11 12221 22345667777774 446777666655555554332 2 23
Q ss_pred HHhhhCCChHHHHHhhcCCCHHHHHH
Q psy12594 203 ESASDCDVIPLLIKALNNDEVNVKAD 228 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~~~~~~~~~~ 228 (542)
..+...|..+.+-++-...++++..+
T Consensus 193 ~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 193 SELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHCChHHHHHHHhccCCHHHHHH
Confidence 34455666666655544455555444
No 131
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.16 E-value=1.9 Score=34.82 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=59.3
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVA 112 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~ 112 (542)
.++..+.+-|++.++.++..|+..|..+.....+.....+.....+..++++++..++.++...+..+...+
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999994444777777777778888888887788999999998888876
No 132
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=84.97 E-value=29 Score=33.83 Aligned_cols=237 Identities=12% Similarity=0.131 Sum_probs=123.9
Q ss_pred CCCchHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHH
Q psy12594 30 KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHM 107 (542)
Q Consensus 30 ~~~~~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~ 107 (542)
++......++...+..|+.++.|+|+..|...-..|.++- .. ...+..+.. ..-..+.+.+.. +...-....+.+
T Consensus 151 ~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY--~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLei 227 (449)
T 2npp_B 151 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIY--GKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEI 227 (449)
T ss_dssp CSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHH--HSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHH
T ss_pred ChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHH
Confidence 4455667777888899999999999999999888887776 32 222222211 111223333322 111222345556
Q ss_pred HHHHhcC-----ChhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCH
Q psy12594 108 LTCVAQQ-----DERCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL 181 (542)
Q Consensus 108 L~~l~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~ 181 (542)
++.+..+ .+++..+. ...|+.+.+... ...-..-..|+..+...++.....+ +..|++.=-..+.
T Consensus 228 lgSIinGfa~PLKeehk~fl----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns 298 (449)
T 2npp_B 228 LGSIINGFALPLKEEHKIFL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHS 298 (449)
T ss_dssp HHHHHSSCCSSCCHHHHHHH----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCH
T ss_pred HHHHHhccCCCCcHHHHHHH----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCc
Confidence 6666544 23333322 344555555443 1222233455555555555543333 2223333333332
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHH
Q psy12594 182 SLKHAAAFALDGIVKH-SPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVE 257 (542)
Q Consensus 182 ~~~~~a~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~ 257 (542)
.=...-+.-|..+... .+.....+. ......+...+.+++-.|.+.|+.... + +.....+.+ ..++| +..
T Consensus 299 ~KevlFL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~----N-~~i~~li~~n~~~IlPii~p 372 (449)
T 2npp_B 299 PKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWN----N-EYIMSLISDNAAKILPIMFP 372 (449)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGG----C-HHHHHHHHTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHC----C-HHHHHHHHhchhhhHHhhHH
Confidence 2222223333344432 222222222 334567778888888888888764432 1 223333322 34566 666
Q ss_pred hhcC----C-ChhHHHHHHHHHHHHhcCChHH
Q psy12594 258 HLTY----P-HGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 258 lL~~----~-~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
-|.. . +..++..+..++..+..-++..
T Consensus 373 ~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 373 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp HHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHH
Confidence 5522 2 7899999999999888777654
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=84.57 E-value=2.8 Score=34.80 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=59.2
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|++.++.++..|+..|..+.....+.....+....++..+++++.. .++.++..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4556677778899999999999999999944447777788777888889888875 678999999888888763
No 134
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.26 E-value=3.1 Score=33.82 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=60.5
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|++.++.++..|+..|-.+.....+.....+....++..|++++.. .++.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777888899999999999999999954447888888888899999998863 468999999988888763
No 135
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=84.19 E-value=30 Score=33.06 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH 135 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~ 135 (542)
..+...+.-+..|.-..++.. -.++++.++.+-.+.+.++|++.+.+|...+....+.. ..+++.|..+|+
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsL-----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTL-----LDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL----LKLIANLNMLLR 110 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGG-----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHc
Confidence 356666666666551122322 34688899988888899999999999999886443332 245778888888
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy12594 136 DFDPDTRANAALALGGLA 153 (542)
Q Consensus 136 ~~~~~~~~~a~~~L~~l~ 153 (542)
++++.+...++.+.+++-
T Consensus 111 d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLY 128 (386)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 889988888887777663
No 136
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=84.18 E-value=3.3 Score=33.71 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=60.4
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-+++.++.++..|+..|..+.....+.....+....++..|++++.. .++.++...+..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 3566777888899999999999999999944447788888888899999999863 578999999999888763
No 137
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=80.76 E-value=31 Score=30.86 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh
Q psy12594 140 DTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218 (542)
Q Consensus 140 ~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll 218 (542)
+.+...+.-...+.. .++..-..+ ++.++.+..+++.++|...+..+...+...++....+ ++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~-----l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~-----l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEF-----LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHV-----INVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHH-----HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 455555555555443 234433333 5556666666778888888888888886555444443 47788888
Q ss_pred cCCCHHHHHHHHHHHHHH--------hcCCh------hhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHH
Q psy12594 219 NNDEVNVKADAFLCLADI--------AKDSP------SLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDM 277 (542)
Q Consensus 219 ~~~~~~~~~~a~~~L~~l--------~~~~~------~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L 277 (542)
.+.++.+.+.++.+..++ +.+.. ...+.+ ..+-. ++.+..+.+..++..++..+..+
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m--~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNIL--SLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH--HHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--HHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 888888888877766555 33321 122222 23344 77777778888888888877765
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=80.50 E-value=3.9 Score=34.21 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=58.7
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc------CCHHHHHHHHHHHHHHhc
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK------QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~------~~~~~~~~a~~~L~~l~~ 113 (542)
++..|.+-+++.++.++..|+..|-.+...........+....++..|++++.. .+..++..++..+...+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 566777888899999999999999999933337777788888899999998862 458999999999888763
No 139
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=80.46 E-value=16 Score=33.45 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHc--CChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhh--CCChHHH
Q psy12594 139 PDTRANAALALGGLAKDNKHFAERIVQC--GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD--CDVIPLL 214 (542)
Q Consensus 139 ~~~~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~--~~~i~~L 214 (542)
......|+..|..++. +-.+--.+... ..+..|+ +....++.+++.|+++++.--+.+|.....+.+ ..++..+
T Consensus 42 ~~~le~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 3345667777777765 33444444442 3333344 334456789999999999999989988777664 2334443
Q ss_pred HHhhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHHHHHHHHHh
Q psy12594 215 IKALNN-------DEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNAATLLRDMC 278 (542)
Q Consensus 215 ~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a~~~L~~L~ 278 (542)
..-|.. ....++..-+.+|..|......+. ...+. |..++... ++.++..++..+..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 333321 234566777777777777653232 12334 55555444 7778877777766554
No 140
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=79.89 E-value=33 Score=30.67 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhc
Q psy12594 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH 135 (542)
Q Consensus 56 ~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~ 135 (542)
..+...+.-...+....++..- ..+++.++.+..+.+.++|+..+.++...+...++... ..++.|..+++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~----~~l~~L~~Ll~ 100 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP----HVINVVSMLLR 100 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHc
Confidence 4666666677776622233332 23566777776678899999999999998855443322 46778888899
Q ss_pred CCCHHHHHHHHHHHHHhhc--------CC------hHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcC-CHH
Q psy12594 136 DFDPDTRANAALALGGLAK--------DN------KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH-SPE 200 (542)
Q Consensus 136 ~~~~~~~~~a~~~L~~l~~--------~~------~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~-~~~ 200 (542)
++++.+...++.+..++-. .. ...+..+.. +=..++.++.+.+..++..|...+..+... ++.
T Consensus 101 d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~ 178 (257)
T 3gs3_A 101 DNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFA 178 (257)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCC
Confidence 8899888888877666531 11 112222211 112344445555566666666555543310 000
Q ss_pred HHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh--HHHHHh-hchHH-HHHhhcCC--ChhHHHHHHHHH
Q psy12594 201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSL--ASTIAD-GATTL-AVEHLTYP--HGLVQKNAATLL 274 (542)
Q Consensus 201 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~-~~~i~-L~~lL~~~--~~~v~~~a~~~L 274 (542)
. +.-+. . ++ -.-|..+..+.+-. ...-.+ .+.+. |+..+.++ +......++.+|
T Consensus 179 ~-------~~~~~-----~-~~-------d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL 238 (257)
T 3gs3_A 179 D-------EDSLK-----R-DG-------DFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSL 238 (257)
T ss_dssp C-------TTSCC-----C-TT-------CCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred C-------cccCC-----C-CC-------CCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHH
Confidence 0 00000 0 00 00111111222111 111122 45666 77776665 444567888888
Q ss_pred HHHhcCChHHHHHH
Q psy12594 275 RDMCKHNLRLANLV 288 (542)
Q Consensus 275 ~~L~~~~~~~~~~~ 288 (542)
..+++..|.....+
T Consensus 239 ~~Iak~RP~~~~rI 252 (257)
T 3gs3_A 239 CTIAKMRPIFMGAV 252 (257)
T ss_dssp HHHHHHCGGGHHHH
T ss_pred HHHHHhCcHHHHHH
Confidence 88888777665443
No 141
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=79.75 E-value=37 Score=32.53 Aligned_cols=236 Identities=13% Similarity=0.096 Sum_probs=112.3
Q ss_pred hHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHH
Q psy12594 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLAD 235 (542)
Q Consensus 157 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~ 235 (542)
+...+..++...+-.|+.++.++|+.=|...-.+|..+-..-...+..+. ..+-..+...+... ...-....+.+++.
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 44444555555678899999999998888888888887653333333222 22223444444322 12222344445555
Q ss_pred HhcCC-hhhHHHHHhhchHH-HHHhhcCCC-hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHH
Q psy12594 236 IAKDS-PSLASTIADGATTL-AVEHLTYPH-GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPA 312 (542)
Q Consensus 236 l~~~~-~~~~~~~~~~~~i~-L~~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a 312 (542)
+..+- ...++.. ..-... |+.+.+... .........|+..+...++.....++ ..|+..--..+..-...=
T Consensus 198 IinGfa~PLkeeh-k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlF 271 (403)
T 3fga_B 198 IINGFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMF 271 (403)
T ss_dssp HHHHCCSSCCHHH-HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHH
T ss_pred HHcccCCCchHHH-HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHH
Confidence 54321 1111110 011234 555555553 23334555566666655555544322 122222222332222222
Q ss_pred HHHHhHhhcC-ChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHH---
Q psy12594 313 IMALGYMSAQ-SEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE---NVLSTLLSK--- 385 (542)
Q Consensus 313 ~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~l~~L~~l--- 385 (542)
+.-+..+... ++...+.+.. .+...+...+.+++ -.|.+.|+... .++ ....++.. .++|.+...
T Consensus 272 L~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~h-fqVAErAL~~w-----nNe-~i~~li~~n~~~IlPii~p~L~~ 343 (403)
T 3fga_B 272 LNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPH-FQVAERALYYW-----NNE-YIMSLISDNAAKILPIMFPSLYR 343 (403)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSC-HHHHHHHHGGG-----GCH-HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCC-HHHHHHHHHHh-----ccH-HHHHHHHHhHHHHHHHHHHHHHH
Confidence 2333333332 2222222222 35666667777743 35555554332 222 22222221 234444433
Q ss_pred -HhcCCCChHHHHHHHHHHHHHHh
Q psy12594 386 -ITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 386 -l~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
.+. .++..|+..+..++.-+..
T Consensus 344 ~~~~-HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 344 NSKT-HWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp TTSC-CSCHHHHHHHHHHHHHHHT
T ss_pred HHHH-ccCHHHHHHHHHHHHHHHH
Confidence 343 3678899888888877753
No 142
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=79.54 E-value=21 Score=34.21 Aligned_cols=230 Identities=12% Similarity=0.116 Sum_probs=112.6
Q ss_pred hHHHHhCCchHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHH
Q psy12594 34 IHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCV 111 (542)
Q Consensus 34 ~~~l~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l 111 (542)
....++...+..|+.++.|+|+..|...-..|.++- .. ...+..+.. ..-..+.+.+.. +...-....+.+++.+
T Consensus 122 ~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY--~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsI 198 (403)
T 3fga_B 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIY--GKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 198 (403)
T ss_dssp HTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH--HHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHH--HhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 344455667788999999999999998888888776 33 222222221 111222333221 1111122334444444
Q ss_pred hcC-----ChhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHH
Q psy12594 112 AQQ-----DERCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKH 185 (542)
Q Consensus 112 ~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~ 185 (542)
..+ .+++..+. ...|+.+.+... ...-..-..|+......++.....+ +..|++.=-..++.=..
T Consensus 199 inGfa~PLkeehk~fl----~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~Kev 269 (403)
T 3fga_B 199 INGFALPLKEEHKIFL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEV 269 (403)
T ss_dssp HHHCCSSCCHHHHHHH----HHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHH
T ss_pred HcccCCCchHHHHHHH----HHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHH
Confidence 322 12333321 234444544443 2222334455555555566544333 22233332333332222
Q ss_pred HHHHHHHHHhcCC-HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--hchHH-HHHhh--
Q psy12594 186 AAAFALDGIVKHS-PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTL-AVEHL-- 259 (542)
Q Consensus 186 ~a~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~-L~~lL-- 259 (542)
.-+.-+..+...- +.....+. ......+...+.+++-.|.+.|+... +++.....+.+ ..++| +...|
T Consensus 270 lFL~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~hfqVAErAL~~w-----nNe~i~~li~~n~~~IlPii~p~L~~ 343 (403)
T 3fga_B 270 MFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYW-----NNEYIMSLISDNAAKILPIMFPSLYR 343 (403)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGG-----GCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHh-----ccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2233333444322 22222222 23456777788888888888776543 11223333322 23455 44443
Q ss_pred --cCC-ChhHHHHHHHHHHHHhcCC
Q psy12594 260 --TYP-HGLVQKNAATLLRDMCKHN 281 (542)
Q Consensus 260 --~~~-~~~v~~~a~~~L~~L~~~~ 281 (542)
+.. +..++..+..++..+..-+
T Consensus 344 ~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 344 NSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp TTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhC
Confidence 333 8899988888888776544
No 143
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=78.52 E-value=20 Score=32.72 Aligned_cols=142 Identities=8% Similarity=0.030 Sum_probs=85.3
Q ss_pred HHhhhcCC------ChHHHHHHHHHHHHhHccCChHHHHHHHh--cCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChh
Q psy12594 46 IVPLLADK------VPSIQHAALATLGKLMCAKHVDIRQEVLE--RNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDER 117 (542)
Q Consensus 46 L~~lL~s~------~~~v~~~a~~~L~~l~~~~~~~~~~~i~~--~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~ 117 (542)
...++++. +...-..|+..|..++ .+-+.-..+.. ...+..|+ +.....+.++..++.+++.....+|.
T Consensus 27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElS--HDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~ 103 (315)
T 3qml_C 27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFA--HDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPP 103 (315)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHGGGT--TSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHhh--hhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHH
Confidence 34555554 3445667888888888 77444444443 34444444 33446788999999999999999988
Q ss_pred hhh-Hhhc--CChHHHHhhhc----C---CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCC--CHhHHH
Q psy12594 118 CAG-LIED--KDLDSIISSLH----D---FDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP--QLSLKH 185 (542)
Q Consensus 118 ~~~-~~~~--g~v~~Lv~lL~----~---~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~ 185 (542)
... +.+. ..+..+..-|. . ....++..-+.+|..|...+..+. ...+..|.+++... ++..+.
T Consensus 104 Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 104 VVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHHHH
Confidence 877 5432 33333333332 1 123455555666666766442221 23466777776655 677777
Q ss_pred HHHHHHHHHh
Q psy12594 186 AAAFALDGIV 195 (542)
Q Consensus 186 ~a~~~L~nl~ 195 (542)
.++..+..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777666554
No 144
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=77.65 E-value=51 Score=31.56 Aligned_cols=154 Identities=15% Similarity=0.192 Sum_probs=97.4
Q ss_pred hHHHHHHHhcCcHHHHHHhhcc-----------CCHHHHHHHHHHHHHHhcCChhhhh-HhhcCChHHHHhhhcCCCHHH
Q psy12594 74 VDIRQEVLERNLVALVLKDLTK-----------QNKHYKKTALHMLTCVAQQDERCAG-LIEDKDLDSIISSLHDFDPDT 141 (542)
Q Consensus 74 ~~~~~~i~~~~~l~~Lv~~L~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~g~v~~Lv~lL~~~~~~~ 141 (542)
......|. .+++..|+..|.. .+...+..++.+|..+......... +...+++..+...|.+.++.+
T Consensus 38 ~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 38 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred cHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 34445553 5677777776642 1356778899999999877766666 455678999999999889999
Q ss_pred HHHHHHHHHHhhcCCh--HHHHHHH----------HcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHH------HH
Q psy12594 142 RANAALALGGLAKDNK--HFAERIV----------QCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPE------LA 202 (542)
Q Consensus 142 ~~~a~~~L~~l~~~~~--~~~~~i~----------~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~------~~ 202 (542)
+..++..|..++.... .....++ +..-...++..+.. .+.+.+..++..+-.+....++ .+
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR 196 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 196 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999998888885432 2022221 22345667777774 4467777666666555553322 23
Q ss_pred HHhhhCCChHHHHHhhcCCCHHHHHH
Q psy12594 203 ESASDCDVIPLLIKALNNDEVNVKAD 228 (542)
Q Consensus 203 ~~~~~~~~i~~L~~ll~~~~~~~~~~ 228 (542)
..+...|..+.+-.+-...++++..+
T Consensus 197 ~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 197 SELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHCChHHHHHHHhccCChhHHHH
Confidence 44555666666555544455555444
No 145
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.99 E-value=4.9 Score=35.40 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=58.1
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-|++.++.++..|+..|..+.....+.....+.....+..|+++++. .++.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3566777788899999999999999999933336677777777888888888764 568899999988888763
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.46 E-value=8.1 Score=33.81 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=56.4
Q ss_pred CchHHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhcc-CCHHHHHHHHHHHHHHh
Q psy12594 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVA 112 (542)
Q Consensus 41 g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~-~~~~~~~~a~~~L~~l~ 112 (542)
.++..|.+-|++.++.++..|+..|..+.....+.....+.....+..|+.++.+ .+..++..++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3456677778899999999999999999932226666777777788888888764 56888888888887765
No 147
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=66.35 E-value=65 Score=27.91 Aligned_cols=139 Identities=9% Similarity=-0.050 Sum_probs=85.5
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhccC-CCHhHHHHHHHHHHHHhcCCHHHHHHh
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAKD-NKHFAERIVQCGALPPLVQILAS-PQLSLKHAAAFALDGIVKHSPELAESA 205 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~nl~~~~~~~~~~~ 205 (542)
..+..+..++.-+.+..|+..+...... .++. ++.+-.++.. .+-.+....+.+++++....++
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 3445566667788888888888766522 2221 2222333433 3455555544666666543332
Q ss_pred hhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHHHH-HhhcCCChhHHHHHHHHHHHHhcCChHH
Q psy12594 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAV-EHLTYPHGLVQKNAATLLRDMCKHNLRL 284 (542)
Q Consensus 206 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~L~-~lL~~~~~~v~~~a~~~L~~L~~~~~~~ 284 (542)
...+.+.....+++.-+++.++..+....... .. ...++++ .++.+++.-|+..+.|+|+.++...++.
T Consensus 124 ---~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~--~~-----~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 124 ---ELPTIFALFYGAENFWNRRVALNLQLMLKEKT--NQ-----DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ---GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGC--CH-----HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC--CH-----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 23356778888899999988877553221111 11 1234444 4777778999999999999999998887
Q ss_pred HHHHHh
Q psy12594 285 ANLVVL 290 (542)
Q Consensus 285 ~~~~~~ 290 (542)
...++.
T Consensus 194 v~~fl~ 199 (220)
T 2b6c_A 194 VEELMK 199 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665543
No 148
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=65.59 E-value=4.9 Score=44.02 Aligned_cols=186 Identities=16% Similarity=0.117 Sum_probs=97.7
Q ss_pred chHHHHhhhcCCCh-HHHHH-HHHHHHHhHccCC---hHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHh---
Q psy12594 42 VVDLIVPLLADKVP-SIQHA-ALATLGKLMCAKH---VDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVA--- 112 (542)
Q Consensus 42 ~i~~L~~lL~s~~~-~v~~~-a~~~L~~l~~~~~---~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~--- 112 (542)
.+|.|..+.+..|. +.+.. |..++..++ .. ++.... ++..+.+..+ +++. .|..++..+..+.
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls--~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n 832 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLG--YMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQHFLSAE 832 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTS--SSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHh--cCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHH
Confidence 77777777665544 55665 666777776 33 333222 2334444444 3455 6666655544432
Q ss_pred --cCChhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhhcCC-h-HHHHHHHH---cCC-----hHHHHHhccCC
Q psy12594 113 --QQDERCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLAKDN-K-HFAERIVQ---CGA-----LPPLVQILASP 179 (542)
Q Consensus 113 --~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~-~-~~~~~i~~---~g~-----i~~L~~ll~~~ 179 (542)
.-+++.. ..+...++.+|.++. .+||+.|+.+|+.+.... + .....++. ..+ ...+-+-.. .
T Consensus 833 ~f~l~~~~~----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~-~ 907 (997)
T 1vsy_5 833 LLQLTEEEK----NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLS-K 907 (997)
T ss_dssp TTTSCTTHH----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHH-H
T ss_pred HHHcCHHHH----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccc-h
Confidence 1121111 246788999999999 999999999999997554 3 22222221 111 111100000 0
Q ss_pred CHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh----cCCCHHHHHHHHHHHHHHhcCChhhH
Q psy12594 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL----NNDEVNVKADAFLCLADIAKDSPSLA 244 (542)
Q Consensus 180 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~ 244 (542)
+..-+..++..|+.+....|-... + ...+|.++..| .+ ...+...+-.+|+++-+...+..
T Consensus 908 ~~~~rH~aVLgL~AlV~a~Py~vP--~-P~w~P~~l~~La~~~~~-~~~i~~tvk~tlseFkrTH~D~W 972 (997)
T 1vsy_5 908 TDIKIHGNVLGLGAIISAFPYVFP--L-PPWIPKNLSNLSSWART-SGMTGNAAKNTISEFKKVRADTW 972 (997)
T ss_dssp HCHHHHHHHHHHHHHHTTCSCCSS--C-CTHHHHHHHHHHTTSSS-CSSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCC--C-CcccHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhccchhH
Confidence 013455666677776664442110 0 12233333333 33 33477888888888765443333
No 149
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.49 E-value=18 Score=29.65 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=56.0
Q ss_pred CchHHHHhhhc-CCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHH-HHHhhcc---CCHHHHHHHHHHHHHHh
Q psy12594 41 NVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVAL-VLKDLTK---QNKHYKKTALHMLTCVA 112 (542)
Q Consensus 41 g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~-Lv~~L~~---~~~~~~~~a~~~L~~l~ 112 (542)
.++..|.+-|+ +.++.++..|+..|..+.....+.....+.....+.. |++++.. .+..++..++..+...+
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 34566777777 4789999999999999995444778788888888888 7888742 34688888888888776
No 150
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=63.13 E-value=42 Score=26.70 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=54.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHh
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMC 278 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~ 278 (542)
+..+.+-+.+.++.++..|+..|-.+..+. ..+...+.....+. +..++...++.|+..+...+...+
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 466777888889999999988888887765 34566777788888 888887778999999988887765
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.50 E-value=46 Score=26.81 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=56.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcC------CChhHHHHHHHHHHHHhc
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTY------PHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~------~~~~v~~~a~~~L~~L~~ 279 (542)
+..+.+-+.+.++.++..|+.+|-.+..+. ..+...+.....+. |+.++.. .++.|+..++..+...+.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 467788888899999999999999888864 45677888889999 9999874 378999999888887763
No 152
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=61.03 E-value=53 Score=26.33 Aligned_cols=80 Identities=9% Similarity=0.033 Sum_probs=61.4
Q ss_pred hHHHHHHHhhCchHHHHHhhcCCCh-----hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHH
Q psy12594 324 EQIAEQIIELQGVGSLQTILQCPHK-----EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSK 398 (542)
Q Consensus 324 ~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~ 398 (542)
......+++.|++..+-..|..-++ ..+|...+.+|.++- -+ ...+.++|+-..++.+.+++..+++.|+.
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP-I~---~e~Lk~SglGkvv~~l~k~~~et~~nk~l 126 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK-IH---KEHLVTSGVGKIVYFYSINPKESKEVRAS 126 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC---HHHHHHHCHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC-CC---HHHhhcCCCCcchhhhhcCCccCHHHHHH
Confidence 4557788999999999988875443 568999999999983 22 45667777777777777788778889998
Q ss_pred HHHHHHHHH
Q psy12594 399 CKNALNILI 407 (542)
Q Consensus 399 a~~aL~nl~ 407 (542)
|...+....
T Consensus 127 a~~Li~~Ws 135 (145)
T 2xpp_A 127 AKALVQKWT 135 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776654
No 153
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=58.57 E-value=28 Score=28.67 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=54.9
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhhchHH-HHHhhcC-CChhHHHHHHHHHHHHhc
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDS-PSLASTIADGATTL-AVEHLTY-PHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~-L~~lL~~-~~~~v~~~a~~~L~~L~~ 279 (542)
+..|.+-+.+.++.++..|+.+|-.+..+. ..+...+.....+. |+.++.. .++.|+..++..+...+.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 466778888889999999999998888764 44666777788888 9888876 378999999888776653
No 154
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=52.96 E-value=50 Score=27.37 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=56.2
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhhchHH-HHHhhcC------CChhHHHHHHHHHHHHhc
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTIADGATTL-AVEHLTY------PHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-L~~lL~~------~~~~v~~~a~~~L~~L~~ 279 (542)
+..|.+-+.+.++.++..|+.+|-.+..+.. .++..+.....+. |+.++.. .+..|+..++..+...+.
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999999888753 4666788888999 9999863 268899999988887764
No 155
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=52.24 E-value=1e+02 Score=26.89 Aligned_cols=140 Identities=16% Similarity=0.070 Sum_probs=83.2
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccC-CCHhHHHHH-HHHHHHHhcCCHHHHHH
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILAS-PQLSLKHAA-AFALDGIVKHSPELAES 204 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~a-~~~L~nl~~~~~~~~~~ 204 (542)
..+..+..++..+.+..|+..+..... ..+.. ++.+-.++.. ++..+.... ..+++.+....++
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETH---------IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG---------HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH---------HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 345556666667788777776664321 12221 2333344433 344444333 3445555443332
Q ss_pred hhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCCChhHHHHHHHHHHHHhcCChH
Q psy12594 205 ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL-AVEHLTYPHGLVQKNAATLLRDMCKHNLR 283 (542)
Q Consensus 205 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 283 (542)
...+.+.....+++.-+++.++..+....... .. ....+ +..++.+++.-|+..+.|+|+.++...|+
T Consensus 131 ----~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~--d~-----~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~ 199 (232)
T 3jxy_A 131 ----LISAYIPKWIASDNIWLQRAAILFQLKYKQKM--DE-----ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD 199 (232)
T ss_dssp ----GGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGC--CH-----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ----HHHHHHHHHhcCCchHHHHHHHHHHHHHHhCC--CH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 23466778888999999988876552221111 00 13344 55667777999999999999999999988
Q ss_pred HHHHHHhc
Q psy12594 284 LANLVVLA 291 (542)
Q Consensus 284 ~~~~~~~~ 291 (542)
....+++.
T Consensus 200 ~v~~fl~~ 207 (232)
T 3jxy_A 200 VVWEYVQN 207 (232)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87666543
No 156
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=50.60 E-value=3.2e+02 Score=30.85 Aligned_cols=168 Identities=8% Similarity=-0.025 Sum_probs=90.9
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH----------h
Q psy12594 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL-NNDEVNVKADAFLCLADIAKDSPSLASTIA----------D 249 (542)
Q Consensus 181 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------~ 249 (542)
..+.++-+..+.++..... ...++.++-++ .+.+...+..+-.++.+-..... ....+. -
T Consensus 324 k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~-it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 324 KTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDC-IQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp HHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTC-SCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCC-chHHHHHHHHHhhHHHH
Confidence 4455555555555544211 34445444332 23344556666666666655431 111111 0
Q ss_pred hchHH-HH----HhhcCCChhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHHHhHhhcCCh
Q psy12594 250 GATTL-AV----EHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE 324 (542)
Q Consensus 250 ~~~i~-L~----~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 324 (542)
....+ ++ .++.+.++.++..+......+-....... +..++..|+...-+++..-...|+.+|..++..++
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~----qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYC----QQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 12222 32 44566688898888887777765543322 23445667776666666666678888888887666
Q ss_pred HHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhc
Q psy12594 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGK 364 (542)
Q Consensus 325 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 364 (542)
...... +-.+..+++.+..-+...+|. ....|+.++.
T Consensus 471 ~~l~~~--a~~l~giLD~l~~l~~~QiRk-lf~iL~~laf 507 (1323)
T 3s4w_B 471 SAMRLN--AAFVKGILDYLENMSPQQIRK-IFCILSTLAF 507 (1323)
T ss_dssp HHHHHT--HHHHHGGGGGGGGCCHHHHHH-HHHHHHHHHH
T ss_pred HHHhHH--HHHHHHHHHhhcCCCHHHHHH-HHHHHHHHHc
Confidence 543321 123444555665555456664 5666776653
No 157
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=49.18 E-value=1e+02 Score=24.78 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=55.8
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhhchHH-HHHhhcC------CChhHHHHHHHHHHHHhc
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTIADGATTL-AVEHLTY------PHGLVQKNAATLLRDMCK 279 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-L~~lL~~------~~~~v~~~a~~~L~~L~~ 279 (542)
+..|.+-+.+.++.++-.|+.+|-.+..+.. .+...+.....+. |+.++.. .++.|+..++..+...+.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 4677788888999999999999888887654 4567788888999 9999874 478899999988887764
No 158
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=48.39 E-value=1.2e+02 Score=26.38 Aligned_cols=140 Identities=13% Similarity=-0.001 Sum_probs=82.7
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHH-HHHHHHHhcCChhhhhHh
Q psy12594 45 LIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTA-LHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 45 ~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a-~~~L~~l~~~~~~~~~~~ 122 (542)
.+..+..+...+.|..|+..+........++ .++.+-..+. .++..+.-.. ..+++.+....++
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 4555666666777777777776543111121 2222223333 2455544333 3444554433321
Q ss_pred hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHH
Q psy12594 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~ 201 (542)
...+.+.....++++.++..|+..+..... .++. ...+.+...+.+++--++....|+|..++..+++.
T Consensus 131 --~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 131 --LISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp --GGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred --HHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 144567788889999988888765432221 1111 12345566778888999999999999999988887
Q ss_pred HHHhhhC
Q psy12594 202 AESASDC 208 (542)
Q Consensus 202 ~~~~~~~ 208 (542)
...+++.
T Consensus 201 v~~fl~~ 207 (232)
T 3jxy_A 201 VWEYVQN 207 (232)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766644
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=47.04 E-value=22 Score=31.85 Aligned_cols=103 Identities=9% Similarity=0.083 Sum_probs=61.7
Q ss_pred cCCChHHHHHHHHHHHHhHccCChH-HHHHHHhcCcHHHHHHhh----c----cCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 51 ADKVPSIQHAALATLGKLMCAKHVD-IRQEVLERNLVALVLKDL----T----KQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~~~~-~~~~i~~~~~l~~Lv~~L----~----~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
.+..+..+..++++++|+. .++. .+..+........++..+ . .++..++..++..+.|++......+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF--~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCF--NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHT--TCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred CCCchhHHHHHHHHHHHcc--cCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 3456789999999999999 7766 444443322233444433 2 13567888888999998742111000
Q ss_pred hhcCChHHHHhhhcC---------CCHHHHHHHHHHHHHhhcCCh
Q psy12594 122 IEDKDLDSIISSLHD---------FDPDTRANAALALGGLAKDNK 157 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~~ 157 (542)
+......+++.+.. .|++....++.+|+++...++
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 11223344444431 367788888888998885443
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=43.60 E-value=1.6e+02 Score=25.37 Aligned_cols=140 Identities=9% Similarity=-0.066 Sum_probs=83.4
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhc-cCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT-KQNKHYKKTALHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 44 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 122 (542)
..+..|..++..+.+..|+..+........++ .++.+-..+. ..+-.+.-..+.+++.+....++
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE---------EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH---------HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH---------HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 34455666677788888888887665111121 1112222333 24555555444556665433221
Q ss_pred hcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHH
Q psy12594 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELA 202 (542)
Q Consensus 123 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~ 202 (542)
...+.+.....+++..+|..|+..+....... ....+ ++.+-.++.+++--++....|+|..++..+++..
T Consensus 124 --~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~--~~~~~-----~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 124 --ELPTIFALFYGAENFWNRRVALNLQLMLKEKT--NQDLL-----KKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp --GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGC--CHHHH-----HHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC--CHHHH-----HHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 13456778888999988888876543222111 11111 3444447788889999999999999999888766
Q ss_pred HHhh
Q psy12594 203 ESAS 206 (542)
Q Consensus 203 ~~~~ 206 (542)
..++
T Consensus 195 ~~fl 198 (220)
T 2b6c_A 195 EELM 198 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
No 161
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=42.64 E-value=1.4e+02 Score=24.54 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=60.9
Q ss_pred ChHHHHHHHhhCchHHHHHhhcCCCh-----hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHH
Q psy12594 323 SEQIAEQIIELQGVGSLQTILQCPHK-----EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKS 397 (542)
Q Consensus 323 ~~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~ 397 (542)
.......+++.|++..+-..|..-++ -.+|...+.+|.++- -+ ...+.++|+=..++-+.+++..+++.|+
T Consensus 65 k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP-I~---~e~Lk~SglGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 65 KANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP-VK---TEHLKESGLGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp CGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC-CC---HHHHHHHSHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC-CC---HHHHhhCCCCceeeehhcCCcccHHHHH
Confidence 34667788999999999988875443 478999999999983 33 3456677777777777777777788898
Q ss_pred HHHHHHHHHH
Q psy12594 398 KCKNALNILI 407 (542)
Q Consensus 398 ~a~~aL~nl~ 407 (542)
-|...+...+
T Consensus 141 la~~Li~~Ws 150 (170)
T 3nfq_A 141 LAEKLIAEWT 150 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888777664
No 162
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=41.58 E-value=36 Score=29.73 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=54.7
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHhc
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMCK 279 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~~ 279 (542)
+..|.+-+.+.++.++..|+.+|-.+..+.. .+...+.....+. |..++... ++.|+..++..+...+.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999888887654 3566777788888 88888654 78899999888887753
No 163
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=40.46 E-value=25 Score=38.51 Aligned_cols=182 Identities=15% Similarity=0.096 Sum_probs=96.4
Q ss_pred chHHHHhhhcCCChHHHHHHHHHHHHhHccCC-hHHHHHHHhcCcHHHHHHhhcc----CCHHHHHHHHHHHH--HH---
Q psy12594 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKH-VDIRQEVLERNLVALVLKDLTK----QNKHYKKTALHMLT--CV--- 111 (542)
Q Consensus 42 ~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~~i~~~~~l~~Lv~~L~~----~~~~~~~~a~~~L~--~l--- 111 (542)
.+.-|+.+-.|..++||..|-.+|.... .. +..... ++|.+++.|+. .+.+-.+.|+++|. .+
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~--~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCM--KQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHH--TTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHH--HhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH
Confidence 4555677777889999999999999998 55 444333 56677777754 23344455555544 11
Q ss_pred hcCChhhhhHhhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCC-----------------------------------
Q psy12594 112 AQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN----------------------------------- 156 (542)
Q Consensus 112 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~----------------------------------- 156 (542)
...+-. .-...++.|++....+.|.++..+-.+...+....
T Consensus 207 ~~~d~~----~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~ 282 (997)
T 1vsy_5 207 LMTDYK----DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAK 282 (997)
T ss_dssp GGGCHH----HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHT
T ss_pred HhcChH----HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 111111 11135566666665555655554443333332100
Q ss_pred hHHHHHHHH--cCChHHHHHhcc-CCC--HhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHH
Q psy12594 157 KHFAERIVQ--CGALPPLVQILA-SPQ--LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL 231 (542)
Q Consensus 157 ~~~~~~i~~--~g~i~~L~~ll~-~~~--~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 231 (542)
...++...+ .+....++...+ +.+ ......++..|.++..... ......++..+++.+.++++.+|..|..
T Consensus 283 ~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~dhp~~R~~a~~ 358 (997)
T 1vsy_5 283 KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTKHPEIIHLVVK 358 (997)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 000111111 122233334432 223 4555555566555543110 1111234567788888899999999998
Q ss_pred HHHHHhc
Q psy12594 232 CLADIAK 238 (542)
Q Consensus 232 ~L~~l~~ 238 (542)
++..+..
T Consensus 359 ~l~~il~ 365 (997)
T 1vsy_5 359 SLLSTCN 365 (997)
T ss_dssp HHTHHHH
T ss_pred HHHHHHH
Confidence 8866653
No 164
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.31 E-value=56 Score=28.32 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=53.5
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhhchHH-HHHhhcCC-ChhHHHHHHHHHHHHh
Q psy12594 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSP-SLASTIADGATTL-AVEHLTYP-HGLVQKNAATLLRDMC 278 (542)
Q Consensus 211 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~-L~~lL~~~-~~~v~~~a~~~L~~L~ 278 (542)
+..|.+-|.+.++.++..|+.+|-.+..+.. .+...+.....+. |..++.+. +..|+..++..+...+
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4667778888999999999999999988764 3566777778888 88888654 6888888887776655
No 165
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=37.92 E-value=1.5e+02 Score=28.53 Aligned_cols=104 Identities=11% Similarity=0.127 Sum_probs=64.6
Q ss_pred cCCChHHHHHHHHHHHHhHccCChHHHHHHHh-cCcHHHHHHhhc--------cCCHHHHHHHHHHHHHHhcCChhhhhH
Q psy12594 51 ADKVPSIQHAALATLGKLMCAKHVDIRQEVLE-RNLVALVLKDLT--------KQNKHYKKTALHMLTCVAQQDERCAGL 121 (542)
Q Consensus 51 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~-~~~l~~Lv~~L~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 121 (542)
.+..+..+..++++++|+. .++.....+.. ......+++.+. ..+..++..++.++.|++......+.
T Consensus 272 ~~~~~an~MltlR~laNlF--~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~- 348 (425)
T 3pst_A 272 GNKNITLTMLTVRILVNCF--NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 348 (425)
T ss_dssp TCSSHHHHHHHHHHHHHHT--TCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS-
T ss_pred CCCChhHHHHHHHHHHHhc--CCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc-
Confidence 3456788999999999999 77653333332 223455555442 23567888888899998743211000
Q ss_pred hhcCChHHHHhhhc---------CCCHHHHHHHHHHHHHhhcCChH
Q psy12594 122 IEDKDLDSIISSLH---------DFDPDTRANAALALGGLAKDNKH 158 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~l~~~~~~ 158 (542)
+......+..++. ..|++....++.+|++|....+.
T Consensus 349 -~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 349 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp -CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred -hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1123344555554 24788888899999999864544
No 166
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=37.45 E-value=51 Score=29.40 Aligned_cols=99 Identities=8% Similarity=0.058 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCCC-chHHHHhCCchHHHHhhhcC--------CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcH
Q psy12594 16 ARLCFVQTMSAFADKPS-TIHFLKDLNVVDLIVPLLAD--------KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLV 86 (542)
Q Consensus 16 ~r~~~~~~l~~l~~~~~-~~~~l~~~g~i~~L~~lL~s--------~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l 86 (542)
-+--++++++|+..++. .+..+.+......++..+.+ .+..+|..++..+.|++....... . +....
T Consensus 106 ~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~-~---~~e~~ 181 (253)
T 3gae_A 106 LTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN-S---DLELL 181 (253)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC-S---CTTHH
T ss_pred HHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc-c---hHHHH
Confidence 46678999999999999 57666544333444443321 245788889999999982211000 0 12334
Q ss_pred HHHHHhhcc---------CCHHHHHHHHHHHHHHhcCChhh
Q psy12594 87 ALVLKDLTK---------QNKHYKKTALHMLTCVAQQDERC 118 (542)
Q Consensus 87 ~~Lv~~L~~---------~~~~~~~~a~~~L~~l~~~~~~~ 118 (542)
..+++.+.. .+++....++.+|+++...++..
T Consensus 182 ~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~ 222 (253)
T 3gae_A 182 PIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 222 (253)
T ss_dssp HHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHH
Confidence 455555542 36788888888999987654433
No 167
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=36.63 E-value=1.4e+02 Score=29.35 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=78.3
Q ss_pred hhcCChHHHHhhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhccCCC--Hh-HHHHHHHHHHHHhcCC
Q psy12594 122 IEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ--LS-LKHAAAFALDGIVKHS 198 (542)
Q Consensus 122 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--~~-~~~~a~~~L~nl~~~~ 198 (542)
.+.=-++.++..|+++++.+...|+.++. . +..+..+...+++..+++++-+++ .. +....=.++..++. +
T Consensus 113 Levysve~i~~aL~S~~~~l~~~~ckVI~---~--s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss-d 186 (500)
T 3vld_A 113 LEVYSAEDLVKALRSEIDPLKVAACRVIE---N--SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST-D 186 (500)
T ss_dssp HHHSCHHHHHHHHTSSCHHHHHHHHHHHH---T--CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-S
T ss_pred HHhCCHHHHHHHHhcCChHHHHHHHHHhc---c--cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-h
Confidence 33345788999999998989888888887 2 222466777788999999998775 33 66777778888876 4
Q ss_pred HHHHHHhhhCCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q psy12594 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238 (542)
Q Consensus 199 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 238 (542)
.-.++.+. .+..|.+..+=.+.++-+.......+.-+..
T Consensus 187 eLirrril-~nnl~lL~~vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 187 ELIRRRLF-DNNLPYLVSVKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp HHHHHHHH-TTTHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHhHHHHHHHhcCCCceeHHHHHHHHHHHhc
Confidence 43555666 4567887777776777776666666665544
No 168
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=33.06 E-value=62 Score=26.20 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=53.4
Q ss_pred CchHHHHhhhcC-CChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHH-HHHhhcc---CCHHHHHHHHHHHHHHhc
Q psy12594 41 NVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVAL-VLKDLTK---QNKHYKKTALHMLTCVAQ 113 (542)
Q Consensus 41 g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~-Lv~~L~~---~~~~~~~~a~~~L~~l~~ 113 (542)
.++..|.+-+.+ .++.++..|+..|..+...........+....++.. |++++.. ....++..++..+...+.
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 455666766764 578888999999999994444777777766667765 6777653 345799999999988874
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=32.89 E-value=3.2e+02 Score=26.31 Aligned_cols=131 Identities=11% Similarity=0.167 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCChhhhhHhhcCChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhccC
Q psy12594 101 KKTALHMLTCVAQQDERCAGLIEDKDLDSII-SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-GALPPLVQILAS 178 (542)
Q Consensus 101 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~ 178 (542)
+.-++.+|+-+..+.+... .+..++ ..+.+..+..+..++++++|+...... ...++.. .....+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~-g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENW-GVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTT-HHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcch-HHHHhhCchhHHHHHHHHHH
Confidence 4456666666654442211 122222 233345688899999999999874442 2333322 223445554421
Q ss_pred --------CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCCh
Q psy12594 179 --------PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN---------NDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 179 --------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+..++.+++..+-|++......+ .+......+..++. ..+.+....++-+|++|....+
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 246788899999999987322111 01223345555554 2488899999999999986544
No 170
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=31.26 E-value=1.1e+02 Score=28.76 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHHhHccCChHHHHHHHhc-CcHHHHHHhh----c----cCCHHHHHHHHHHHHHHhcCChhhhhHh
Q psy12594 52 DKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDL----T----KQNKHYKKTALHMLTCVAQQDERCAGLI 122 (542)
Q Consensus 52 s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~-~~l~~Lv~~L----~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 122 (542)
+..+..+..++++++|+. .++.....+... .....+++.+ . ..+..++..++.++.|++......+.
T Consensus 210 ~~~~~n~MltlR~laNlF--~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~-- 285 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCF--NNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 285 (362)
T ss_dssp CSSHHHHHHHHHHHHHHT--TCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS--
T ss_pred CCChhHHHHHHHHHHHhc--cCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 456788999999999999 775533333322 1223334333 1 23567888888899998743211000
Q ss_pred hcCChHHHHhhhc---------CCCHHHHHHHHHHHHHhhcCChH
Q psy12594 123 EDKDLDSIISSLH---------DFDPDTRANAALALGGLAKDNKH 158 (542)
Q Consensus 123 ~~g~v~~Lv~lL~---------~~~~~~~~~a~~~L~~l~~~~~~ 158 (542)
+......+.+++. ..|++....++.+|+++....+.
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1123345555554 24788888899999999864444
No 171
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=30.14 E-value=2.1e+02 Score=27.18 Aligned_cols=127 Identities=10% Similarity=0.044 Sum_probs=63.5
Q ss_pred HHHHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHH
Q psy12594 158 HFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADI 236 (542)
Q Consensus 158 ~~~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l 236 (542)
...+..++...+..|+.++.++|+.=|.....+|..+-..-...+..+. ..+-..+.+.+... ...-....++.++.+
T Consensus 165 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsI 243 (392)
T 2jak_A 165 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSI 243 (392)
T ss_dssp HHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 3344445556688899999999988888888888776542222232221 22224455555432 222334555666665
Q ss_pred hcCCh-hhHHHHHhhchHH-HHHhhcCCC-hhHHHHHHHHHHHHhcCChHHHH
Q psy12594 237 AKDSP-SLASTIADGATTL-AVEHLTYPH-GLVQKNAATLLRDMCKHNLRLAN 286 (542)
Q Consensus 237 ~~~~~-~~~~~~~~~~~i~-L~~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~~ 286 (542)
..+-. ..++.. ..-... |+.+.+... .........|+..+...++....
T Consensus 244 Ingfa~PLKeeh-k~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~ 295 (392)
T 2jak_A 244 INGFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTE 295 (392)
T ss_dssp HHTCCSSCCHHH-HHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHH
T ss_pred HhccCCCCcHHH-HHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHH
Confidence 54431 111110 001233 555555442 22223444555555544444443
No 172
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=29.44 E-value=4e+02 Score=25.86 Aligned_cols=234 Identities=13% Similarity=0.103 Sum_probs=108.6
Q ss_pred HHHHHHcCChHHHHHhccCCCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhcCC-CHHHHHHHHHHHHHHhc
Q psy12594 160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAK 238 (542)
Q Consensus 160 ~~~i~~~g~i~~L~~ll~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~ 238 (542)
.+..++...+-.|+.++.++|+.=|...-.+|..+-..-...+..+. ..+-..+.+.+... ...-....+..++.+..
T Consensus 155 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHH-HHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 34445556678899999999998888888888777553222222222 11223444444322 22333456666666655
Q ss_pred CCh-hhHHHHHhhchHH-HHHhhcCCC-hhHHHHHHHHHHHHhcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHHHHH
Q psy12594 239 DSP-SLASTIADGATTL-AVEHLTYPH-GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA 315 (542)
Q Consensus 239 ~~~-~~~~~~~~~~~i~-L~~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~~ 315 (542)
+-. ...+. ...-... |+.+.+... .........|+..+...++.....++ ..|+.+--..+..-...-+.-
T Consensus 234 Gfa~PLKee-hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 234 GFALPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SCCSSCCHH-HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHHH
T ss_pred ccCCCCcHH-HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----HHHHHhCCCCCchHHHHHHHH
Confidence 421 11111 0111234 555555553 22333455555555555555444322 222332222332222222333
Q ss_pred HhHhhcC-ChHHHHHHHhhCchHHHHHhhcCCChhhHHHHHHHHHHHhhcCChHHHHHHHHc--CChHHHHHHHh---cC
Q psy12594 316 LGYMSAQ-SEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEE--NVLSTLLSKIT---QT 389 (542)
Q Consensus 316 L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~l~~L~~ll~---~~ 389 (542)
|..+... .+...+.+.. .+...+...+.+++ -.|-+.|+... .++.....+.+. .++|.+..-|. ..
T Consensus 308 leeile~~~~~ef~~i~~-~lF~~la~ci~S~h-fqVAErAL~~w-----~N~~i~~li~~n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSPH-FQVAERALYYW-----NNEYIMSLISDNAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSC-HHHHHHHHGGG-----GCHHHHHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCC-HHHHHHHHHHH-----CCHHHHHHHHhchhhhHHhhHHHHHHHHHH
Confidence 3333332 2222222222 35566667777643 34554444222 222222222211 24455555442 12
Q ss_pred CCChHHHHHHHHHHHHHH
Q psy12594 390 CVSDNLKSKCKNALNILI 407 (542)
Q Consensus 390 ~~~~~v~~~a~~aL~nl~ 407 (542)
.++..||..+..++.-+.
T Consensus 381 HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp CSSTTHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 356677777777766444
No 173
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=27.78 E-value=57 Score=27.72 Aligned_cols=74 Identities=19% Similarity=0.051 Sum_probs=48.6
Q ss_pred CchHHHHHhhcCCCh--hhHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHh
Q psy12594 334 QGVGSLQTILQCPHK--EQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIP 408 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~ 408 (542)
..+|.++..+-...- ..+|..|+..++.++......- .-+...++..+.+.+.++..+......|.+.|..+..
T Consensus 87 ~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 87 QILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 466666666644221 2699999999999975421110 1112335667777887776678888999999988854
No 174
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.81 E-value=1.5e+02 Score=27.95 Aligned_cols=131 Identities=11% Similarity=0.168 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCChhhhhHhhcCChHHHH-hhhcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhccC
Q psy12594 101 KKTALHMLTCVAQQDERCAGLIEDKDLDSII-SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCG-ALPPLVQILAS 178 (542)
Q Consensus 101 ~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~ll~~ 178 (542)
+.-++.+++-+..+.+.. +.+..++ ..+.+..+..+..+++++.|+...... .+.++... ....+++.+.+
T Consensus 180 ~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~-g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENW-GVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTT-HHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcch-HHHHHhcchhHHHHHHHHHH
Confidence 444666666655443211 1222222 233345688899999999999875442 23333221 12334443321
Q ss_pred --------CCHhHHHHHHHHHHHHhcCCHHHHHHhhhCCChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCCh
Q psy12594 179 --------PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN---------NDEVNVKADAFLCLADIAKDSP 241 (542)
Q Consensus 179 --------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~ 241 (542)
.+..++.+++..+-|++......+ .+......+..++. ..+.+....++-+|++|...++
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 246788899999999987322111 11223345555555 2588899999999999986544
No 175
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.14 E-value=2.6e+02 Score=22.54 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=51.3
Q ss_pred CchHHHHHhhcCCChhhHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHH-HHHHHhc-CCCChHHHHHHHHHHHHHHhh
Q psy12594 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHS-VDNVTALCEENVLST-LLSKITQ-TCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 334 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~-L~~ll~~-~~~~~~v~~~a~~aL~nl~~~ 409 (542)
.++..|..-+.+..++.++..|+..|-.+..+. +.....+.+..++.. |+.++.. .+++..||..+...+......
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 355667777775344578888888887776654 455555666778887 7787743 233468999888877776644
No 176
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=25.84 E-value=3.1e+02 Score=26.04 Aligned_cols=80 Identities=10% Similarity=0.100 Sum_probs=44.8
Q ss_pred HHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCChHHHHhhhcCCC-HHHHHHHHHHHHHhh
Q psy12594 75 DIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD-PDTRANAALALGGLA 153 (542)
Q Consensus 75 ~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~ 153 (542)
......++...+..|+.++.++++.-|.....+|.++-..-...+.++....-..+.+...... ..-....+..++.+.
T Consensus 165 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsII 244 (392)
T 2jak_A 165 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSII 244 (392)
T ss_dssp HHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 3344455566788899999999999999888888776433223333222222333444443322 111223445555555
Q ss_pred c
Q psy12594 154 K 154 (542)
Q Consensus 154 ~ 154 (542)
.
T Consensus 245 n 245 (392)
T 2jak_A 245 N 245 (392)
T ss_dssp H
T ss_pred h
Confidence 3
No 177
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.80 E-value=41 Score=26.38 Aligned_cols=59 Identities=5% Similarity=-0.009 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhCCCchhhHHhhcCCCCHHHHHHHHHHHHhhCCC
Q psy12594 381 TLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPC 442 (542)
Q Consensus 381 ~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~i~~L~~lL~~~~~~~v~~~~l~~l~~ll~~ 442 (542)
..++-|... .+.++.-+.|++.|.-.....+..+.+-+. ..+++-....++.+..++.+
T Consensus 12 ~~L~~L~~s--~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~-~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 12 RKFQSVTNT--MESIQGLSSWCIENKKHHSTIVYHWMKWLR-RSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHCCSS--HHHHHHHHHHHHHTGGGHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCccc--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHH
Confidence 334445433 457888899998876433334555555566 56666566666666666544
No 178
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=22.90 E-value=3.3e+02 Score=23.78 Aligned_cols=107 Identities=9% Similarity=0.020 Sum_probs=59.6
Q ss_pred HHHHHHhhhcCCccchHHH---HHHHhHhhcCChHHHHHHHhhCchHHHHHhhcCCCh-hhHHHHH----HHHHHHhhcC
Q psy12594 294 LDGLLRLIDCNGGYNSLPA---IMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHK-EQLQVAA----AWTLGQIGKH 365 (542)
Q Consensus 294 i~~Lv~lL~~~~~~~~~~a---~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~v~~~a----~~~L~~l~~~ 365 (542)
++.|-.+....++.+...+ +..+.|+ .++.-..++.+.++.....++..=.+ ..++... ...+.++...
T Consensus 9 ie~Lk~yfNas~~Dv~dgg~lfl~il~nW---~e~~dkkIi~SQIVSfY~klfe~lkdn~~iq~si~~ik~~l~~~f~n~ 85 (258)
T 1fyh_A 9 AENLKKYFNAGHSDVADNGTLFLGILKNW---KEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNS 85 (258)
T ss_dssp HHHHHHHHTTTSGGGGSSCCSSHHHHHHC---CSHHHHHHHHHHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCcccCCCcchHHHHHhh---hhcccceeHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666666666543332 2344444 34555667778888888888763332 2233211 1223444333
Q ss_pred ChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhhCCC
Q psy12594 366 SVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCEN 412 (542)
Q Consensus 366 ~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~~~~ 412 (542)
+.. -+..+..+.+-+-.+..|++.|+.=|..++...|.
T Consensus 86 s~~---------K~~df~~l~k~~v~d~~vQrkAi~EL~~VM~~sG~ 123 (258)
T 1fyh_A 86 NKK---------KRDDFEKLTNYSVTDLNVQRKAIDELIQVMAELGA 123 (258)
T ss_dssp CHH---------HHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHH---------HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHcCc
Confidence 332 23445566665555678999998888887665443
No 179
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=22.79 E-value=5.3e+02 Score=29.08 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=61.9
Q ss_pred hhhcCCChHHHHHHHHHHHHhHccCChHHHHHHHhcCcHHHHHHhhccCCHHHHHHHHHHHHHHhcCChhhhhHhhcCCh
Q psy12594 48 PLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDL 127 (542)
Q Consensus 48 ~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~i~~~~~l~~Lv~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~v 127 (542)
.++.+.++.++..+......+....+.-.++. ++..|+..+.+++..-...|+.+|..++...+..-... .-.+
T Consensus 407 ~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqe-----Vl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~-a~~l 480 (1323)
T 3s4w_B 407 TLFHSQDQRIILFGSLLYKYAFKFFDTYCQQE-----VVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLN-AAFV 480 (1323)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHT-HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhccchhHHH-----HHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHH-HHHH
Confidence 55678899999988887777773333333333 45577777777777667779999999986554433311 1134
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHhh
Q psy12594 128 DSIISSLHDFDPDTRANAALALGGLA 153 (542)
Q Consensus 128 ~~Lv~lL~~~~~~~~~~a~~~L~~l~ 153 (542)
..++..+.+-++.-.......|+.++
T Consensus 481 ~giLD~l~~l~~~QiRklf~iL~~la 506 (1323)
T 3s4w_B 481 KGILDYLENMSPQQIRKIFCILSTLA 506 (1323)
T ss_dssp HGGGGGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 45555565555433334456666665
No 180
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=20.84 E-value=4.1e+02 Score=23.20 Aligned_cols=183 Identities=11% Similarity=0.042 Sum_probs=90.4
Q ss_pred HHHHHhhhCCChHHHHHhhcC--CCHHHHHHH----HHHHHHHhcCChhhHHHHHhhchHH-HHHhhcCC--ChhHHHHH
Q psy12594 200 ELAESASDCDVIPLLIKALNN--DEVNVKADA----FLCLADIAKDSPSLASTIADGATTL-AVEHLTYP--HGLVQKNA 270 (542)
Q Consensus 200 ~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a----~~~L~~l~~~~~~~~~~~~~~~~i~-L~~lL~~~--~~~v~~~a 270 (542)
+.-..++.+.+++...+++.. .+..++... ...+.++-.++. .-+. +..+.+-+ |..+++.|
T Consensus 40 ~~dkkIi~SQIVSfY~klfe~lkdn~~iq~si~~ik~~l~~~f~n~s~---------~K~~df~~l~k~~v~d~~vQrkA 110 (258)
T 1fyh_A 40 ESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNK---------KKRDDFEKLTNYSVTDLNVQRKA 110 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHTCCTTCHHHHHHH
T ss_pred cccceeHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHccCCCcHHHHHHH
Confidence 445556666777777777652 122222221 112333333332 1233 55555554 88899888
Q ss_pred HHHHHHH----hcCChHHHHHHHhcCCHHHHHHhhhcCCccchHHH---HHHHhHhhcCChHHHHHHHhhCchHHHHHhh
Q psy12594 271 ATLLRDM----CKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPA---IMALGYMSAQSEQIAEQIIELQGVGSLQTIL 343 (542)
Q Consensus 271 ~~~L~~L----~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a---~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 343 (542)
+.-|..+ .+..+... . .-++.|..+....++.+.... +..+.++. ++....++.+.++.....++
T Consensus 111 i~EL~~VM~~sG~y~q~~~---~--keIe~LK~yfNasn~Dv~dggplFl~ilknwk---ee~dkkIi~SQIvs~Y~KlF 182 (258)
T 1fyh_A 111 IDELIQVMAELGANVSGEF---V--KEAENLKKYFNAGHSDVADNGTLFLGILKNWK---EESDRKIMQSQIVSFYFKLF 182 (258)
T ss_dssp HHHHHHHHHHTTCCCCHHH---H--HHHHHHHHHHC-------CCCCSSHHHHHHCC---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccchhH---H--HHHHHHHHHhccCCccccCCCcchHHhhhhhh---hccchhhHHHHHHHHHHHHH
Confidence 8666554 22222211 1 235566666666555432211 23444443 45556677778888888887
Q ss_pred cCCCh-hhHHHHHHH-----HHHHhhcCChHHHHHHHHcCChHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q psy12594 344 QCPHK-EQLQVAAAW-----TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409 (542)
Q Consensus 344 ~~~~~-~~v~~~a~~-----~L~~l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~~~v~~~a~~aL~nl~~~ 409 (542)
..-.+ +.++.. .. .+.+...++.. -+..+..+.+-+-.++.||+.|.|=|....+.
T Consensus 183 e~Lkdn~~iq~s-m~~IkedL~~~~fn~s~~---------Kl~df~~L~ki~vnD~~IQrKAi~EL~~V~~~ 244 (258)
T 1fyh_A 183 KNFKDDQSIQKS-VETIKEDMNVKFFNSNKK---------KRDDFEKLTNYSVTDLNVQRKAIHELIQVMAE 244 (258)
T ss_dssp HTTTTCTTTHHH-HHHHHHHHHHHHTTSCHH---------HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHTT
T ss_pred HhhccCHHHHHH-HHHHHHHHHHHhccCcHH---------HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 63222 233332 11 12233222222 23445556555545678999999988777654
No 181
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=20.52 E-value=24 Score=17.22 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=3.8
Q ss_pred CCcchhhhh
Q psy12594 521 PSGSAQSLQ 529 (542)
Q Consensus 521 ~~~~~~~~~ 529 (542)
|||+..|++
T Consensus 9 pg~s~~sg~ 17 (21)
T 3u85_B 9 PGTTGGGGG 17 (26)
T ss_pred CCcccCCCc
Confidence 444444443
Done!