RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12594
(542 letters)
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 161 bits (410), Expect = 3e-44
Identities = 73/402 (18%), Positives = 152/402 (37%), Gaps = 9/402 (2%)
Query: 23 TMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHV-DIRQEVL 81
M + + + + ++ ++ K P Q +A KL+ + I + +
Sbjct: 2 AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61
Query: 82 ERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQD-ERCAGLIEDKDLDSIISSLHDFDP 139
+VA ++ L + +N + + +LT +A + + +I+ + I L
Sbjct: 62 TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 140 DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP-QLSLKHAAAFALDGIVKHS 198
D + A ALG +A D+ + ++ C LPPL+Q+ + +L++ A +AL + +
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181
Query: 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVE 257
E A + +L L + +V ADA L+ ++ + D G VE
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241
Query: 258 HLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG 317
L + V A + ++ + +++ L LL L+ A +
Sbjct: 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301
Query: 318 YMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQ-IGKHSVDNVTALCEE 376
++A + + +I+ +L +ILQ + AAW + S + + L E
Sbjct: 302 NITAGNRAQIQTVIDANIFPALISILQTAEFR-TRKEAAWAITNATSGGSAEQIKYLVEL 360
Query: 377 NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQ 418
+ L + T + + N L ++ E +
Sbjct: 361 GCIKPLCDLL--TVMDSKIVQVALNGLENILRLGEQEAKRNG 400
Score = 123 bits (309), Expect = 1e-30
Identities = 58/326 (17%), Positives = 120/326 (36%), Gaps = 16/326 (4%)
Query: 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
V + + LL+ + +Q A+ LG + R VL+ N++ +L+ +KQN+
Sbjct: 105 QAGAVPIFIELLSSEFEDVQEQAVWALGNI-AGDSTMCRDYVLDCNILPPLLQLFSKQNR 163
Query: 99 H-YKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDN 156
+ A+ L+ + + + L+ + L D D A+A AL L+
Sbjct: 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223
Query: 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIK 216
+ ++ G LV++L + A A+ IV + +C + L+
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283
Query: 217 ALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAA-TLL 274
L++ + ++K +A +++I + + T+ D + L +K AA +
Sbjct: 284 LLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAIT 343
Query: 275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ--------- 325
+ +V G + L L+ A+ L + EQ
Sbjct: 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI 403
Query: 326 --IAEQIIELQGVGSLQTILQCPHKE 349
I E G+ ++ + ++E
Sbjct: 404 NPYCALIEEAYGLDKIEFLQSHENQE 429
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 158 bits (401), Expect = 1e-42
Identities = 73/437 (16%), Positives = 164/437 (37%), Gaps = 18/437 (4%)
Query: 3 RKSVKNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNV-------VDLIVPLLADKVP 55
RK+ ++ + + R T A +D+ D + + L
Sbjct: 44 RKAKRD--EALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDM 101
Query: 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK-QNKHYKKTALHMLTCVAQQ 114
Q +A +++ +H V++ +V +++ + + Q + + A LT +A
Sbjct: 102 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161
Query: 115 DERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLV 173
++ D D + I L+ + + A ALG +A D+ + + ++QC A+ P++
Sbjct: 162 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221
Query: 174 QILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCL 233
+ S + SL A + L + + + + +P L K + + + DA +
Sbjct: 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281
Query: 234 ADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAG 292
+ ++ + D VE L++ LVQ A + ++ N +V+ AG
Sbjct: 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341
Query: 293 GLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352
L L L+ A + ++A + + + +I+ + L +L+ + +
Sbjct: 342 VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK-TK 400
Query: 353 VAAAWTLGQI---GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPK 409
A W + G D + L + + L + + + +AL ++
Sbjct: 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL--EIADNRIIEVTLDALENILKM 458
Query: 410 CENPKELEQMLLGNVSE 426
E KE + + ++
Sbjct: 459 GEADKEARGLNINENAD 475
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 143 bits (363), Expect = 1e-39
Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 2/240 (0%)
Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHA 186
L + L+ D + +A + D + ++ GALP LVQ+L+SP +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246
A +AL I E ++ D +P L++ L++ + +A L++IA
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 247 IAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305
+ D GA V+ L+ P+ + + A L ++ V+ AG L L++L+
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Query: 306 GYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKH 365
A+ AL +++ + + + E + L+ + + E++Q A L ++ H
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQSH 252
Score = 120 bits (302), Expect = 4e-31
Identities = 49/251 (19%), Positives = 101/251 (40%), Gaps = 3/251 (1%)
Query: 32 STIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91
+ H + + + L Q +A ++ + + Q V++ + +++
Sbjct: 3 GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQI-LSDGNEQIQAVIDAGALPALVQ 61
Query: 92 DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALG 150
L+ N+ + AL L+ +A + D L +++ L + A AL
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 151 GLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDV 210
+A + ++ GALP LVQ+L+SP + A +AL I E ++ D
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181
Query: 211 IPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKN 269
+P L++ L++ + +A L++IA + + GA + ++ + +QK
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 270 AATLLRDMCKH 280
A L + H
Sbjct: 242 AQEALEKLQSH 252
Score = 57.3 bits (139), Expect = 2e-09
Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 44/177 (24%)
Query: 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQ 267
+P + + LN+D++ + A + I D + D GA V+ L+ P+ +
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA 327
+ A L ++ V+ AG L L++L +S+ +EQI
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQL------------------LSSPNEQIL 113
Query: 328 EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
++ A W L I + + A+ + L L+
Sbjct: 114 QE-------------------------ALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Score = 43.8 bits (104), Expect = 7e-05
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 288 VVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPH 347
L + + ++ + L A + + + + +I+ + +L +L P+
Sbjct: 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 348 KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
EQ+ A W L I + + A+ + L L+
Sbjct: 68 -EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 103
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 140 bits (353), Expect = 2e-35
Identities = 64/429 (14%), Positives = 137/429 (31%), Gaps = 26/429 (6%)
Query: 37 LKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95
++ +V IV + + TL L + H + + + + ++K L
Sbjct: 52 MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGS 109
Query: 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAK 154
A+ L + E + L +++ L+ + A L LA
Sbjct: 110 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
N+ I+ G LV I+ + + ++ + + + L
Sbjct: 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 229
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
L + + + L +++ + +G V+ L V AA +L
Sbjct: 230 GLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGIL 287
Query: 275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSA---QSEQIAEQ 329
++ +N + +V GG++ L+R + G + PAI AL ++++ ++E
Sbjct: 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA 347
Query: 330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389
+ G+ + +L P L A + + N L E+ + L+
Sbjct: 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQ--LLV 404
Query: 390 CVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRS 449
+ + + + G EE++ A IL D R
Sbjct: 405 RAHQDTQRRTSMGGTQQQ-----------FVEGVRMEEIVEGCTGALH-ILARDVHNRIV 452
Query: 450 FVTSHCLRK 458
+ +
Sbjct: 453 IRGLNTIPL 461
Score = 108 bits (271), Expect = 4e-25
Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 2/225 (0%)
Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
+ + A+P L ++L + + AA + + K ++ +++ + N
Sbjct: 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 67
Query: 221 -DEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCK 279
++V L +++ L + G V+ L P V A T L ++
Sbjct: 68 TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127
Query: 280 HNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSL 339
H V LAGGL ++ L++ L ++ +++ I+ G +L
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187
Query: 340 QTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
I++ E+L + L + S N A+ E + L
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGL 231
Score = 105 bits (264), Expect = 3e-24
Identities = 45/347 (12%), Positives = 105/347 (30%), Gaps = 41/347 (11%)
Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKH 185
+ + L+D D AA+ + L+K + + +V+ + + +
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245
A L + H E + IP L+K L + +V A L ++
Sbjct: 76 CTAGTL-HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 246 TIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN 304
+ G V L + L+ + N +++ +GG L+ ++
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194
Query: 305 GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAA--------- 355
L + + + I+E G+ +L L P + +Q
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254
Query: 356 -----------------------------AWTLGQIGKHSVDNVTALCEENVLSTLLSKI 386
A L + ++ N +C+ + L+ +
Sbjct: 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314
Query: 387 TQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASIL 433
+ +++ AL L + + + + + + ++ +L
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 361
Score = 86.5 bits (214), Expect = 5e-18
Identities = 52/368 (14%), Positives = 106/368 (28%), Gaps = 30/368 (8%)
Query: 21 VQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEV 80
+ + + S + + + + L D + L TL L A E
Sbjct: 204 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 263
Query: 81 LERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDP- 139
L LV L L L LTC + + + +++++ ++
Sbjct: 264 LLGTLVQL-LGSDDINVVTCAAGILSNLTC--NNYKNKMMVCQVGGIEALVRTVLRAGDR 320
Query: 140 -DTRANAALALGGLA---KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195
D A AL L ++ + + LP +V++L P A L +
Sbjct: 321 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 380
Query: 196 KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLA 255
P + IP L++ L + + +
Sbjct: 381 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME---------- 430
Query: 256 VEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA 315
+ + L + + ++ + ++L+ A
Sbjct: 431 ---------EIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 480
Query: 316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCE 375
L + AQ ++ AE I L +L + E + AA L ++ + +
Sbjct: 481 LCEL-AQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKPQDYKKRLS 538
Query: 376 ENVLSTLL 383
+ S+L
Sbjct: 539 VELTSSLF 546
Score = 86.1 bits (213), Expect = 6e-18
Identities = 51/330 (15%), Positives = 99/330 (30%), Gaps = 28/330 (8%)
Query: 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
++ +V LL ++ A L L + + V + + +++ + +
Sbjct: 261 MEGLLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGD 319
Query: 99 HYKKT-----ALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGL 152
T AL LT Q+ E + L ++ LH A + L
Sbjct: 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379
Query: 153 AKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK----HSPELAESAS-- 206
+ + GA+P LVQ+L + + E+ E +
Sbjct: 380 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 439
Query: 207 ---------------DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGA 251
+ IPL ++ L + N++ A L ++A+D + + A+GA
Sbjct: 440 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA 499
Query: 252 TTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLP 311
T E L + V AA +L M + + + L R +
Sbjct: 500 TAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADL 559
Query: 312 AIMALGYMSAQSEQIAEQIIELQGVGSLQT 341
+ + + G
Sbjct: 560 GLDIGAQGEPLGYRQDDPSYRSFHSGGYGQ 589
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 139 bits (352), Expect = 4e-35
Identities = 60/391 (15%), Positives = 135/391 (34%), Gaps = 16/391 (4%)
Query: 37 LKDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95
++ +V IV + TL L + H + + + + ++ L
Sbjct: 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL--SHHREGLLAIFKSGGIPALVNMLGS 245
Query: 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAK 154
A+ L + E + L +++ L+ + A L LA
Sbjct: 246 PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305
Query: 155 DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLL 214
N+ I+ G LV I+ + + ++ + + + L
Sbjct: 306 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 365
Query: 215 IKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
L + + + L +++ D+ + + TL V+ L V AA +L
Sbjct: 366 GLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGLLGTL-VQLLGSDDINVVTCAAGIL 423
Query: 275 RDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSA---QSEQIAEQ 329
++ +N + +V GG++ L+R + G + PAI AL ++++ +E
Sbjct: 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483
Query: 330 IIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389
+ G+ + +L P L A + + N L E+ + L+ Q
Sbjct: 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLV----QL 538
Query: 390 CVSDNLKSKCKNALNILIPKCENPKELEQML 420
V + ++ + ++ + +E+++
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Score = 113 bits (283), Expect = 2e-26
Identities = 47/385 (12%), Positives = 109/385 (28%), Gaps = 53/385 (13%)
Query: 130 IISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAA 188
+ L+D D AA+ + L+K + + +V+ + + + +
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214
Query: 189 FALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIA 248
L + H E + IP L+ L + +V A L ++ +
Sbjct: 215 GTL-HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273
Query: 249 D-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGY 307
G V L + L+ + N +++ +GG L+ ++
Sbjct: 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333
Query: 308 NSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAA----------- 356
L + + + I+E G+ +L L P + +Q
Sbjct: 334 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393
Query: 357 ---------------------------WTLGQIGKHSVDNVTALCEENVLSTLLSKITQT 389
L + ++ N +C+ + L+ + +
Sbjct: 394 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 453
Query: 390 CVSDNLKSKCKNALNILIPKCENPKELEQM------------LLGNVSEELLASILCAFA 437
+++ AL L + ++ + + LL S L
Sbjct: 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513
Query: 438 KILPCDPVARRSFVTSHCLRKVQEI 462
+ L P + ++ ++
Sbjct: 514 RNLALCPANHAPLREQGAIPRLVQL 538
Score = 88.2 bits (218), Expect = 2e-18
Identities = 45/352 (12%), Positives = 104/352 (29%), Gaps = 32/352 (9%)
Query: 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
+ + + L D + L TL L ++ L+ +++ L +
Sbjct: 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDI 413
Query: 99 HYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDF--DPDTRANAALALGGLA-- 153
+ A +L+ + + + ++ +++++ ++ D A AL L
Sbjct: 414 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473
Query: 154 -KDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
+D + + LP +V++L P A L + P + IP
Sbjct: 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 533
Query: 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAAT 272
L++ L + + + I +
Sbjct: 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC-------------------TG 574
Query: 273 LLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
L + + ++ + ++L+ A L ++ E AE I
Sbjct: 575 ALHILARDIHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEA 632
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
L +L + E + AA L ++ + + + S+L
Sbjct: 633 EGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683
Score = 63.5 bits (154), Expect = 1e-10
Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 26/216 (12%)
Query: 28 ADKPSTIHFLKDLNVVDLIVPLLADKVP-SIQHAALATLGKLMCAKHVDIRQEVLERNLV 86
D + ++ + ++V LL + A + + A + E+ +
Sbjct: 475 QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN--LALCPANHAPLREQGAI 532
Query: 87 ALVLKDLTKQNKHYKKTALHMLTCVAQQD--------ERCAG--------------LIED 124
+++ L + ++ ++ T + E C G +
Sbjct: 533 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592
Query: 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLK 184
+ + L+ + + AA L LA+D + AE I GA PL ++L S +
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLHSRNEGVA 651
Query: 185 HAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
AA L + + P+ + ++ L +
Sbjct: 652 TYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPM 687
Score = 58.9 bits (142), Expect = 3e-09
Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 6/192 (3%)
Query: 197 HSPELAESASDCDVIPLLIKALNND-EVNVKADAFLCLADIAKD--SPSLASTIADGATT 253
+ E+ + IP + V A+ L + + + +A A
Sbjct: 94 RAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIP 153
Query: 254 LAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLI-DCNGGYNSLPA 312
+ L +V AA ++ + K ++ + ++R + + N +
Sbjct: 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 213
Query: 313 IMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA 372
L +S + I + G+ +L +L P + A TL + H A
Sbjct: 214 SGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDS-VLFHAITTLHNLLLHQEGAKMA 271
Query: 373 LCEENVLSTLLS 384
+ L +++
Sbjct: 272 VRLAGGLQKMVA 283
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 135 bits (342), Expect = 1e-34
Identities = 69/463 (14%), Positives = 144/463 (31%), Gaps = 64/463 (13%)
Query: 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKK 102
V+ IV + Q A KL+ + ++ L+ + L K +
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD----- 113
Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162
+ +A AL +A +
Sbjct: 114 -----------------------------------CSPIQFESAWALTNIASGTSEQTKA 138
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
+V GA+P + +LASP + A +AL I + I L+ L +
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198
Query: 223 VNVKADAFLC-----LADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAATLLRD 276
++ A +L L+++ ++ A V L + V ++ +
Sbjct: 199 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 258
Query: 277 MCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGV 336
+ +VV G + L++L+ PA+ A+G + +++ +++I+ +
Sbjct: 259 LTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 318
Query: 337 GSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS---------KIT 387
++L P K +Q A WT+ I D + + ++ L+ +
Sbjct: 319 AVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 377
Query: 388 QTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASI-----LCAFAKILPC 442
N S + + C + L +L ++ + + + A+ L
Sbjct: 378 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437
Query: 443 DPVARRSFVTSHCLRKVQEI--EPTPEIAPH-LKTINACFPNE 482
L K++ + + L I F E
Sbjct: 438 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480
Score = 122 bits (306), Expect = 6e-30
Identities = 56/332 (16%), Positives = 123/332 (37%), Gaps = 15/332 (4%)
Query: 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
D + + LLA I A+ LG + R V++ + +L L +
Sbjct: 141 DGGAIPAFISLLASPHAHISEQAVWALGNI-AGDGSAFRDLVIKHGAIDPLLALLAVPDL 199
Query: 99 HYKKTALH-----MLTCVAQQDERCAGLIEDKDLDSIISSL-HDFDPDTRANAALALGGL 152
L+ + + L + + + L H DP+ A++ A+ L
Sbjct: 200 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259
Query: 153 AKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
E +V+ G +P LV++L + +L + A A+ IV + E + D +
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319
Query: 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQKNAA 271
+ L N + N++ +A +++I + + G V L+ QK AA
Sbjct: 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379
Query: 272 TLLRDMC-KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM------SAQSE 324
+ + + +V G ++ L+ L+ + A+ + ++E
Sbjct: 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETE 439
Query: 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAA 356
+++ I E G+ ++ + + ++ + +
Sbjct: 440 KLSIMIEECGGLDKIEALQRHENESVYKASLN 471
Score = 115 bits (288), Expect = 2e-27
Identities = 53/319 (16%), Positives = 117/319 (36%), Gaps = 14/319 (4%)
Query: 111 VAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLA-KDNKHFAERIVQCGAL 169
A D + ++ I+ ++ + +++ A A L ++ + + I++ G +
Sbjct: 43 KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 102
Query: 170 PPLVQILA-SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKAD 228
P V L + ++ +A+AL I + E ++ D IP I L + ++
Sbjct: 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQ 162
Query: 229 AFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQK-----NAATLLRDMCKHNL 282
A L +IA D + + GA + L P N L ++C++
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222
Query: 283 RLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTI 342
L + L L+RL+ N + A+ Y++ + E +++ V L +
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282
Query: 343 LQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNA 402
L + A +G I + + + + L+ S +++ + K A
Sbjct: 283 LGATE-LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS-----LLTNPKTNIQKEA 336
Query: 403 LNILIPKCENPKELEQMLL 421
+ ++ Q ++
Sbjct: 337 TWTMSNITAGRQDQIQQVV 355
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 134 bits (340), Expect = 3e-34
Identities = 63/401 (15%), Positives = 140/401 (34%), Gaps = 16/401 (3%)
Query: 29 DKPSTIHFLKDLNVVDLIVPLLA-DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVA 87
+ S ++ +V IV + TL L + H + + + +
Sbjct: 47 KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIP 104
Query: 88 LVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAA 146
++K L A+ L + E + L +++ L+ + A
Sbjct: 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164
Query: 147 LALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS 206
L LA N+ I+ G LV I+ + + ++ +
Sbjct: 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 224
Query: 207 DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLV 266
+ + L L + + + L +++ D+ + + TL V+ L V
Sbjct: 225 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGLLGTL-VQLLGSDDINV 282
Query: 267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSA--- 321
AA +L ++ +N + +V GG++ L+R + G + PAI AL ++++
Sbjct: 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342
Query: 322 QSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLST 381
++E + G+ + +L P L A + + N L E+ +
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPR 401
Query: 382 LLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLG 422
L+ Q V + ++ + ++ + +E+++ G
Sbjct: 402 LV----QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438
Score = 111 bits (279), Expect = 3e-26
Identities = 52/308 (16%), Positives = 106/308 (34%), Gaps = 13/308 (4%)
Query: 148 ALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASD 207
A+ L + + A+P L ++L + + AA + + K
Sbjct: 1 AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 208 CDVIPLLIKALNN-DEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLV 266
++ +++ + N ++V L +++ L + G V+ L P V
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 267 QKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQI 326
A T L ++ H V LAGGL ++ L++ L ++ +++
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177
Query: 327 AEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKI 386
I+ G +L I++ E+L + L + S N A+ E + L +
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL 236
Query: 387 TQTCVSDNLKSKCKNALNILIPKCENPKELEQM------LLGNVSEELLASILCAFAKIL 440
T S L C L L + +E + LLG+ ++ + +
Sbjct: 237 --TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294
Query: 441 PCDPVARR 448
+ +
Sbjct: 295 CNNYKNKM 302
Score = 104 bits (262), Expect = 4e-24
Identities = 46/347 (13%), Positives = 106/347 (30%), Gaps = 41/347 (11%)
Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-LSLKH 185
+ + L+D D AA+ + L+K + + +V+ + + +
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78
Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245
A L + H E + IP L+K L + +V A L ++
Sbjct: 79 CTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137
Query: 246 TIAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCN 304
+ G V L + L+ + N +++ +GG L+ ++
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 197
Query: 305 GGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVA---------- 354
L + + + I+E G+ +L L P + +Q
Sbjct: 198 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257
Query: 355 ----------------------------AAWTLGQIGKHSVDNVTALCEENVLSTLLSKI 386
AA L + ++ N +C+ + L+ +
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317
Query: 387 TQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASIL 433
+ +++ AL L + + + + + + ++ +L
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364
Score = 82.9 bits (205), Expect = 5e-17
Identities = 51/348 (14%), Positives = 103/348 (29%), Gaps = 32/348 (9%)
Query: 21 VQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEV 80
+ + + S + + + + L D + L TL L A E
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG 266
Query: 81 LERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDP 139
L LV L L + + A +L+ + + + ++ +++++ ++
Sbjct: 267 LLGTLVQL----LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322
Query: 140 --DTRANAALALGGLAKDNKHF---AERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
D A AL L ++ + LP +V++L P A L
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382
Query: 195 VKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTL 254
+ P + IP L++ L + + + I +G T
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442
Query: 255 AVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIM 314
H + + + ++L+ A
Sbjct: 443 LHILARDVHNRIV--------------------IRGLNTIPLFVQLLYSPIENIQRVAAG 482
Query: 315 ALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362
L + AQ ++ AE I L +L + E + AA L ++
Sbjct: 483 VLCEL-AQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRM 528
Score = 80.6 bits (199), Expect = 3e-16
Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 28/285 (9%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
++ +V LL ++ A L L + + V + + +++ + +
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325
Query: 102 KT-----ALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
T AL LT Q+ E + L ++ LH A + L
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385
Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLI 215
+ + GA+P LVQ+L + + E
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME------------ 433
Query: 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLR 275
+ L +A+D + L V+ L P +Q+ AA +L
Sbjct: 434 --------EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485
Query: 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMS 320
++ + A + G L L+ + A L MS
Sbjct: 486 ELAQDK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 109 bits (274), Expect = 1e-27
Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 1/197 (0%)
Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHA 186
L ++ L+ D +A L +A + ++ GALP LVQ+L+SP +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246
A +AL I E ++ D +P L++ L++ + +A L++IA
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 247 IAD-GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305
+ D GA V+ L+ P+ + + A L ++ V AG L+ L +L
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 306 GYNSLPAIMALGYMSAQ 322
A AL + +
Sbjct: 194 EKIQKEAQEALEKLQSH 210
Score = 75.0 bits (185), Expect = 1e-15
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 42/200 (21%)
Query: 39 DLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
D + +V LL+ I AL L + + + Q V++
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNI-ASGGNEQIQAVID---------------- 94
Query: 99 HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKH 158
AG + +++ L + A AL +A
Sbjct: 95 --------------------AGALP-----ALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 159 FAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218
+ ++ GALP LVQ+L+SP + A +AL I E ++ + + L +
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 219 NNDEVNVKADAFLCLADIAK 238
+++ ++ +A L +
Sbjct: 190 SHENEKIQKEAQEALEKLQS 209
Score = 61.5 bits (150), Expect = 4e-11
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Query: 256 VEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMA 315
V+ L P ++A L + V+ AG L L++L+ A+ A
Sbjct: 18 VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77
Query: 316 LGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCE 375
L +++ + + +I+ + +L +L P+++ + A W L I + + A+ +
Sbjct: 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVID 136
Query: 376 ENVLSTLLS 384
L L+
Sbjct: 137 AGALPALVQ 145
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 92.6 bits (229), Expect = 8e-20
Identities = 47/295 (15%), Positives = 93/295 (31%), Gaps = 8/295 (2%)
Query: 37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
L + + + L + + Q L + ++R +V++ V +L+ +
Sbjct: 491 LANEGITTALCALAKTESHNSQELIARVLNAV--CGLKELRGKVVQEGGVKALLRMALEG 548
Query: 97 NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL----HDFDPDTRANAALALGGL 152
+ K+ A L + + LD I L D + +AL L
Sbjct: 549 TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608
Query: 153 AKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
A N+ +RI++ + + L L L AAA L +V + + D +
Sbjct: 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668
Query: 213 LLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTLAVEHLTYPHGLVQKNA 270
L +++ LA I S I + + P VQ
Sbjct: 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728
Query: 271 ATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQ 325
++ +M +A + ++ L L + +A ++A
Sbjct: 729 IVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783
Score = 82.2 bits (202), Expect = 1e-16
Identities = 62/512 (12%), Positives = 142/512 (27%), Gaps = 67/512 (13%)
Query: 7 KNSIDHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLG 66
++ R + ++ D + + + ++ +I+ + Q A L
Sbjct: 258 APDMESKVRVTVAITALLNGPLDVGNQV--VAREGILQMILAMATTDDELQQRVACECLI 315
Query: 67 KLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGL--IED 124
K + + L V ++ + +N + AL L + + A + D
Sbjct: 316 AASSKKD---KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGD 372
Query: 125 KDLDSIISSLHDF------DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178
+ + F D D R AA L L D + + I ++ L+ +
Sbjct: 373 GAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG 432
Query: 179 PQLSLKHAAAFALDGIVKHS------PELAESAS-------------------------- 206
S + + PE+ E A
Sbjct: 433 GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492
Query: 207 DCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLV 266
+ + L + N + L + + +G +
Sbjct: 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKG 552
Query: 267 QKNAATLLRDMC--KHNLRLANLVVLAGGLDGLLRLIDCNG-GYNSLPAIMALGYMSAQS 323
+++A L + + + + LL L+ + + ++MAL +++ +
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612
Query: 324 EQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
E + ++II+ QGV ++ L H L AAA L + + + L
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671
Query: 384 SKITQTCVSDNLKSKCKNALNILIPKCENPKELEQM-------------LLGNVSEELLA 430
D + L + + L+ N S +
Sbjct: 672 L-----LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726
Query: 431 SILCAFAKILPCDPVARRSFVTSHCLRKVQEI 462
+ ++ + + + + +
Sbjct: 727 RGIVIILNMINAGEEIAKKLFETDIMELLSGL 758
Score = 82.2 bits (202), Expect = 1e-16
Identities = 61/409 (14%), Positives = 127/409 (31%), Gaps = 62/409 (15%)
Query: 29 DKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVAL 88
D ++D + ++ L S + + T L A E+ +
Sbjct: 409 DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY---------EKQEMLP 459
Query: 89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALA 148
+ +L K K H L V ++R L + ++ + +++ A
Sbjct: 460 EMIELAKFAKQ-HIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARV 518
Query: 149 LGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI-VKHSPELAESASD 207
L + + ++VQ G + L+++ K A AL I + +PE++ S
Sbjct: 519 LNAVCGLKEL-RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577
Query: 208 C-DVIPLLIKALNNDEVNV-KADAFLCLADIAKDSPSLASTI-ADGATTLAVEHLTYPHG 264
DVI L+ L D + ++ + L ++A + S+ I + + +L H
Sbjct: 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL 637
Query: 265 LVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSE 324
+ + AA L ++ + + L L +
Sbjct: 638 YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-------------------- 677
Query: 325 QIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
E+ A A L I SV + + L
Sbjct: 678 -----------------------DEETATACAGALAIITSVSVKCCEKILAIA---SWLD 711
Query: 385 KITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASIL 433
+ + + + + I++ +E+ + L ELL+ +
Sbjct: 712 ILHTLIANPSPAVQ-HRGIVIILNMINAGEEIAKKLFETDIMELLSGLG 759
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 83.9 bits (207), Expect = 5e-18
Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 5/203 (2%)
Query: 55 PSIQHAALATLGKLMCAKHVDIRQEVLERN-LVALVLKDLTKQNKHYKKTALHMLTCVAQ 113
+ AL L +++D + + + + LV + L + A ++ +Q
Sbjct: 54 QQEREGALELL--ADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ 111
Query: 114 QDERCAGLIEDKDLDSIISSL--HDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPP 171
+ + L D R A A+ L ++ + + ++
Sbjct: 112 NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV 171
Query: 172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL 231
L++ + LK +AF L ++ PE + ++ L+ + +
Sbjct: 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLG 231
Query: 232 CLADIAKDSPSLASTIADGATTL 254
L + D P + L
Sbjct: 232 ALCSLVTDFPQGVRECREPELGL 254
Score = 61.6 bits (149), Expect = 1e-10
Identities = 36/176 (20%), Positives = 71/176 (40%), Gaps = 5/176 (2%)
Query: 212 PLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD--GATTLAVEHLTYPHGLVQKN 269
P +A + + A LAD+ ++ A+ G L +L ++
Sbjct: 43 PTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWR 101
Query: 270 AATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLP-AIMALGYMSAQSEQIAE 328
AA L+ ++ + V+ G L LLRL+D + A+ A+ + + E
Sbjct: 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161
Query: 329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
Q + L G L +Q ++L+V +A+ L + ++ LC ++ L++
Sbjct: 162 QFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 85.0 bits (210), Expect = 9e-18
Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 24/334 (7%)
Query: 52 DKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCV 111
DK + L L ++ + + + +H A+ +L +
Sbjct: 116 DKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175
Query: 112 AQQDE-----RCAGLIE------DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160
+ +E G ++ D + + + R A +AL L +
Sbjct: 176 SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 235
Query: 161 ERIVQ-CGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA-SDCDVIPLLIKAL 218
+ G + LV L S L+ A L + + ++ + + L++
Sbjct: 236 ATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295
Query: 219 -NNDEVNVKADAFLCLADIAKDSPSLASTI--ADGATTLAVEHLTYPHG----LVQKNAA 271
+ + L +++ + I DGA V LTY + ++
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355
Query: 272 TLLRDMCKHNLRLAN---LVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAE 328
+LR++ + ++ L LL+ + + A L +SA++ + E
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415
Query: 329 QIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362
+ ++ V L+ ++ HK + + +A L +
Sbjct: 416 ALWDMGAVSMLKNLIHSKHKM-IAMGSAAALRNL 448
Score = 80.0 bits (197), Expect = 3e-16
Identities = 49/335 (14%), Positives = 110/335 (32%), Gaps = 30/335 (8%)
Query: 78 QEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIE-----DKDLDSIIS 132
+E R AL ++ + + + +L + Q C E + +D +
Sbjct: 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKN 155
Query: 133 SLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ-----------L 181
+ A L L+ D +H + + G L + ++L +
Sbjct: 156 PMPAPVEHQICPAVCVLMKLSFDEEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI 214
Query: 182 SLKHAAAFALDGIVKHSPEL-AESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240
+L+ A AL + A S + L+ L ++ +++ L +++ +
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274
Query: 241 PSLASTI---ADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRL-ANLVVLAGGLDG 296
+ L L K+ + L ++ H A++ + G L
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334
Query: 297 LLRLIDCNGGYNSLP-------AIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE 349
L+ + N+L + + + A +E + + E + +L L+
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-L 393
Query: 350 QLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLS 384
+ A TL + + + AL + +S L +
Sbjct: 394 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 428
Score = 74.2 bits (182), Expect = 3e-14
Identities = 41/308 (13%), Positives = 95/308 (30%), Gaps = 26/308 (8%)
Query: 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLE----RNLVALVLKDLTKQNK 98
+D + V A+ L KL + + R + E + + L+ D
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGL 207
Query: 99 HYKKTALHMLTCVA--------QQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALAL 149
++ + A L K + ++++ L D + A L
Sbjct: 208 TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267
Query: 150 GGLA-KDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPEL-AESAS 206
L+ + + + + + + G++ L++ + S + AL + H E A+ +
Sbjct: 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 327
Query: 207 DCDVIPLLIKALNNDEVNVKADAFL-------CLADIAKDSPSLASTIAD-GATTLAVEH 258
+ L+ L ++ + + + + ++H
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387
Query: 259 LTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318
L + NA L ++ N + + G + L LI ++ + AL
Sbjct: 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
Query: 319 MSAQSEQI 326
+ A
Sbjct: 448 LMANRPAK 455
Score = 71.1 bits (174), Expect = 3e-13
Identities = 37/227 (16%), Positives = 79/227 (34%), Gaps = 10/227 (4%)
Query: 26 AFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNL 85
F D + + +V L + +Q + L L V+ ++ + E
Sbjct: 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287
Query: 86 VALVLKDLTKQNKHY-KKTALHML-TCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTR 142
V +++ + K K+ L L A E A + L ++ +L
Sbjct: 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347
Query: 143 ANAALALGG-------LAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195
+ GG L N+ + + + L L+Q L S L++ A L +
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407
Query: 196 KHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
+P+ E+ D + +L +++ + + L ++ + P+
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
Score = 66.9 bits (163), Expect = 6e-12
Identities = 44/309 (14%), Positives = 93/309 (30%), Gaps = 27/309 (8%)
Query: 124 DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSL 183
++ + S L + + + L ++ + Q G LP L+Q+L
Sbjct: 28 GTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDS-CISMRQSGCLPLLIQLLHGNDKDS 86
Query: 184 KHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK---DS 240
+ + +I + +D+ + L L + + ++
Sbjct: 87 VLLGNSRGSKEARA--------RASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCET 138
Query: 241 PSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL 300
+ + P A +L + + + GGL + L
Sbjct: 139 CWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAEL 197
Query: 301 IDCNGGYNSLP-----------AIMALGYMSAQSEQIAEQIIELQG-VGSLQTILQCPHK 348
+ + L A MAL ++ + ++G + +L L+
Sbjct: 198 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES- 256
Query: 349 EQLQVAAAWTLGQI-GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407
E LQ A L + + V++ L E + L+ + LKS N+
Sbjct: 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316
Query: 408 PKCENPKEL 416
EN ++
Sbjct: 317 HCTENKADI 325
Score = 60.7 bits (147), Expect = 5e-10
Identities = 40/287 (13%), Positives = 80/287 (27%), Gaps = 35/287 (12%)
Query: 121 LIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ 180
L+ D DS++ + RA A+ AL + + L L QI A +
Sbjct: 78 LLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCE 137
Query: 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240
+ A + + + A L ++ D
Sbjct: 138 TCWEWQEA------------------HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE 179
Query: 241 PSLASTIADGATTLAVEHLTYPHGL-----------VQKNAATLLRDMCKHNLRLANLVV 289
+ G E L + +++ A L ++ ++ +
Sbjct: 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239
Query: 290 -LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSA-QSEQIAEQIIELQGVGSLQTILQCPH 347
+ G + L+ + L +S + + E+ V +L
Sbjct: 240 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 299
Query: 348 KEQLQVAAAWTLGQIGKHSVDNVTALCEEN----VLSTLLSKITQTC 390
KE + L + H +N +C + L L+ +QT
Sbjct: 300 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 83.4 bits (206), Expect = 1e-17
Identities = 49/328 (14%), Positives = 108/328 (32%), Gaps = 24/328 (7%)
Query: 58 QHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDE- 116
H L L ++ + + + +H A+ +L ++ +E
Sbjct: 6 HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65
Query: 117 ----RCAGLIE------DKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC 166
G ++ D + + + R A +AL L + +
Sbjct: 66 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125
Query: 167 -GALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA-SDCDVIPLLIKAL-NNDEV 223
G + LV L S L+ A L + + ++ + + L++ +
Sbjct: 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 185
Query: 224 NVKADAFLCLADIAKDSPSLASTI--ADGATTLAVEHLTYPHG----LVQKNAATLLR-- 275
+ L +++ + I DGA V LTY + ++ +LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 276 -DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQ 334
+ N ++ L LL+ + + A L +SA++ + E + ++
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 335 GVGSLQTILQCPHKEQLQVAAAWTLGQI 362
V L+ ++ HK + + +A L +
Sbjct: 306 AVSMLKNLIHSKHKM-IAMGSAAALRNL 332
Score = 83.4 bits (206), Expect = 1e-17
Identities = 49/312 (15%), Positives = 105/312 (33%), Gaps = 27/312 (8%)
Query: 98 KHYKKTALHMLTCVAQQDERCAGLIEDKD--LDSIISSLHDFDPDTRANAALALGGLAKD 155
H+ LH+L + E C E + +D + + A L L+ D
Sbjct: 3 HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62
Query: 156 NKHFAERIVQCGALPPLVQILASPQ-----------LSLKHAAAFALDGIVKHSPEL-AE 203
+H + + G L + ++L ++L+ A AL + A
Sbjct: 63 EEH-RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121
Query: 204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTI---ADGATTLAVEHLT 260
S + L+ L ++ +++ L +++ + + L L
Sbjct: 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 181
Query: 261 YPHGLVQKNAATLLRDMCKHNLRL-ANLVVLAGGLDGLLRLIDCNGGYNSLP-------A 312
K+ + L ++ H A++ + G L L+ + N+L
Sbjct: 182 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241
Query: 313 IMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTA 372
+ + + A +E + + E + +L L+ H + A TL + + + A
Sbjct: 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEA 300
Query: 373 LCEENVLSTLLS 384
L + +S L +
Sbjct: 301 LWDMGAVSMLKN 312
Score = 75.3 bits (185), Expect = 6e-15
Identities = 41/321 (12%), Positives = 98/321 (30%), Gaps = 26/321 (8%)
Query: 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLE----RNLVALVLKDLTKQNK 98
+D + V A+ L KL + + R + E + + L+ D
Sbjct: 34 MDQDKNPMPAPVEHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGL 91
Query: 99 HYKKTALHMLTCVA-------QQDERCAGLIEDKD--LDSIISSLHDFDPDTRANAALAL 149
++ + D + + ++++ L D + A L
Sbjct: 92 TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151
Query: 150 GGLA-KDNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFALDGIVKHSPEL-AESAS 206
L+ + + + + + + G++ L++ + S + AL + H E A+ +
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 211
Query: 207 DCDVIPLLIKALNNDEVNVKADAFL-------CLADIAKDSPSLASTIAD-GATTLAVEH 258
+ L+ L ++ + + + + ++H
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271
Query: 259 LTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGY 318
L + NA L ++ N + + G + L LI ++ + AL
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
Query: 319 MSAQSEQIAEQIIELQGVGSL 339
+ A + + SL
Sbjct: 332 LMANRPAKYKDANIMSPGSSL 352
Score = 72.2 bits (177), Expect = 6e-14
Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 14/229 (6%)
Query: 26 AFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERN- 84
F D + + +V L + +Q + L L V+ ++ + E
Sbjct: 112 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171
Query: 85 ---LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-----LDSIISSLHD 136
L+ L+ + +AL L+ A E A + + ++
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLS--AHCTENKADICAVDGALAFLVGTLTYRSQT 229
Query: 137 FDPDTRANAALAL---GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDG 193
+ L L N+ + + + L L+Q L S L++ A L
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289
Query: 194 IVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
+ +P+ E+ D + +L +++ + + L ++ + P+
Sbjct: 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 76.4 bits (187), Expect = 5e-15
Identities = 40/268 (14%), Positives = 78/268 (29%), Gaps = 16/268 (5%)
Query: 126 DLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKH 185
+ + L D +A A + ++ +++ Q G + LV +L SP +++
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKAL-NNDEVNVKADAFLCLADIAKDSPSLA 244
AAA AL +V S + I + L ++ L +++
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 245 STIADGATTLAVEHLTYPHGL---------------VQKNAATLLRDMCKHNLRLANLVV 289
IAD LA + G V NA LR++ + +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 290 LAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKE 349
+G +D L+ + + M E+
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 350 QLQVAAAWTLGQIGKHSVDNVTALCEEN 377
+ ++ + + L EE
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEE 270
Score = 48.3 bits (114), Expect = 4e-06
Identities = 20/183 (10%), Positives = 54/183 (29%), Gaps = 12/183 (6%)
Query: 20 FVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKH-----V 74
+ + P +L + + + L+ A A + + A
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 75 DIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSL 134
+ L+ + + + L N ++ +L+ +++ ++ ++ + L
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGNQVFPEVTRLL 380
Query: 135 HDFDP------DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAA 188
D ++A + L A++ L ++ + S AA
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 189 FAL 191
L
Sbjct: 441 RLL 443
Score = 47.9 bits (113), Expect = 5e-06
Identities = 30/267 (11%), Positives = 75/267 (28%), Gaps = 28/267 (10%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
++D ++ + + V + + + + ++ R + + +
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245
Query: 102 KTA--------------LHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFD-PDTRANAA 146
T L + L + + ++ + T A
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305
Query: 147 LALGGLAKDNKHFAE-----RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201
AL L + ++ LP + ++L S + + A L + +H P L
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLL 364
Query: 202 AESASDCDVIPLLIK-----ALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAV 256
+ + ++ ++ + A + ++ P LA + +
Sbjct: 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424
Query: 257 EHLTYPHGL--VQKNAATLLRDMCKHN 281
+L + A LL DM
Sbjct: 425 INLCRSSASPKAAEAARLLLSDMWSSK 451
Score = 36.0 bits (82), Expect = 0.030
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 312 AIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT 371
+ + Q E +Q+ +L G+ L +L+ P++ +Q AAA L + S N
Sbjct: 22 GAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQN-VQQAAAGALRNLVFRSTTNKL 80
Query: 372 ALCEENVLSTLLSKITQT 389
+N + +S + +T
Sbjct: 81 ETRRQNGIREAVSLLRRT 98
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 73.2 bits (179), Expect = 1e-14
Identities = 41/236 (17%), Positives = 90/236 (38%), Gaps = 24/236 (10%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
V+ ++ LL D + ++ A++ + + AK + E + + L +L+ K +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVI--AKTREDLYEPMLKKLFSLLKKS---EAIPLT 87
Query: 102 KTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
+ +A++ + + ++ D T+ N + AL +AK N
Sbjct: 88 QEIAKAFGQMAKEKPELV----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
IV+ + +L+S K A ++ + ++S + +P +I L++
Sbjct: 144 SIVR-----DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF-----LPRIINLLHDG 193
Query: 222 EVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDM 277
+ V+A A L +A + L + +E L LV K + +
Sbjct: 194 DEIVRASAVEALVHLATLNDKLRKVVIK-----RLEELNDTSSLVNKTVKEGISRL 244
Score = 68.2 bits (166), Expect = 5e-13
Identities = 41/208 (19%), Positives = 82/208 (39%), Gaps = 20/208 (9%)
Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQIL-ASPQLSLKH 185
L +I L D NA + +AK + E L L +L S + L
Sbjct: 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQ 88
Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245
A A + K PEL +S +IP+L + K + L +IAK +P L +
Sbjct: 89 EIAKAFGQMAKEKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143
Query: 246 TIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305
+I ++ L+ + + A + M +++ + + L ++ L+
Sbjct: 144 SIVRDFMSM----LSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGD 194
Query: 306 GYNSLPAIMALGYMSAQSEQIAEQIIEL 333
A+ AL +++ ++++ + +I+
Sbjct: 195 EIVRASAVEALVHLATLNDKLRKVVIKR 222
Score = 60.5 bits (146), Expect = 2e-10
Identities = 34/244 (13%), Positives = 77/244 (31%), Gaps = 25/244 (10%)
Query: 133 SLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192
S+ + + D R A K L L+++L ++ A +
Sbjct: 2 SMEEEEFDIREALANG----EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIM 57
Query: 193 GIVKHSPELAESASDCDVIPLLIKALNNDE-VNVKADAFLCLADIAKDSPSLASTIADGA 251
I K +L E ++ L L E + + + +AK+ P L ++
Sbjct: 58 VIAKTREDLYE-----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP-- 110
Query: 252 TTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLP 311
+ + + N + L ++ K N L +V + ++ + L
Sbjct: 111 --VLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNREDKLT 163
Query: 312 AIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT 371
A+ + M S + + + +L E ++ +A L + +
Sbjct: 164 ALNFIEAMGENSFKYVNPFLPR-----IINLLH-DGDEIVRASAVEALVHLATLNDKLRK 217
Query: 372 ALCE 375
+ +
Sbjct: 218 VVIK 221
Score = 49.3 bits (117), Expect = 9e-07
Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 16/156 (10%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
++ ++ + L ++ A +L ++V + L+ +N+ K
Sbjct: 108 MIPVLFANYRIGDEKTKINVSYALEEIAKAN------PMLMASIVRDFMSMLSSKNREDK 161
Query: 102 KTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
TAL+ + + + + L II+ LHD D RA+A AL LA N +
Sbjct: 162 LTALNFIEAMGENSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217
Query: 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197
+ ++ L + + ++
Sbjct: 218 ------VVIKRLEELNDTSSLVNKTVKEGISRLLLL 247
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 75.4 bits (184), Expect = 2e-14
Identities = 65/420 (15%), Positives = 130/420 (30%), Gaps = 72/420 (17%)
Query: 113 QQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPL 172
++ +L +I+ L ++NAA L L N + + +P L
Sbjct: 36 RKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL 95
Query: 173 VQILASPQLSLKHAAAFALDGI-VKHSPELAESASDCDVIPLLIKALNN-DEVNVKADAF 230
V +L P+ + A AL I + + +CD +P L++ L ++++
Sbjct: 96 VGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVIT 155
Query: 231 LCLADIAKDSPSLASTIADGATTLAVE-----------------HLTYPHGLVQKNAATL 273
L +++ + L E V N A
Sbjct: 156 GTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC 215
Query: 274 LRDMCKHNLRLANLVVLAGGL-DGLLRLID---------------CNGGYNSLPAIMALG 317
LR++ + GL D L+ ++ C +L +
Sbjct: 216 LRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275
Query: 318 YMSAQSEQIA----------------EQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQ 361
A+ Q A E + + + V ++L+ + A+A +
Sbjct: 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQN 335
Query: 362 I----GKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELE 417
+ + +AL +E LS + +T + + AL L N + +
Sbjct: 336 LCAGRWTYGRYIRSALRQEKALSAIADLLTNE--HERVVKAASGALRNLAVDARNKELIG 393
Query: 418 ---------------QMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEI 462
Q N SE+ + SIL +++ + A + + + K+ I
Sbjct: 394 KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLI 453
Score = 53.8 bits (128), Expect = 8e-08
Identities = 38/203 (18%), Positives = 71/203 (34%), Gaps = 15/203 (7%)
Query: 11 DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLAD-KVPSIQHAALATLGKLM 69
+ + L VV + + LL + K P+I A+ + L
Sbjct: 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337
Query: 70 CAKH---VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD 126
+ IR + + ++ + LT +++ K A L +A D R LI
Sbjct: 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV-DARNKELIGKHA 396
Query: 127 LDSIISSLHDFDP--------DTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178
+ +++ +L DT + + + +N A+++ + + LV I S
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456
Query: 179 PQLSLK--HAAAFALDGIVKHSP 199
S K AAA L I +
Sbjct: 457 GNRSEKEVRAAALVLQTIWGYKE 479
Score = 52.3 bits (124), Expect = 2e-07
Identities = 49/367 (13%), Positives = 116/367 (31%), Gaps = 24/367 (6%)
Query: 14 QRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLM--CA 71
++ +S D+ + I V L+ L + + TL L +
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166
Query: 72 KHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSII 131
++I L L V+ + + + AG + + +
Sbjct: 167 IKMEIVDHALH-ALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225
Query: 132 SSLHDFDPDTRANAALALGGLAKDNKHFAERIVQC-----GALPPLVQILASPQLSLKHA 186
+ + D +A + + K ++V+ L V + A
Sbjct: 226 ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285
Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVN-VKADAFLCLADIAKDSPSLAS 245
A + E +V+ + I L + + + + ++ +
Sbjct: 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR 345
Query: 246 TI-----ADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRL 300
I + A + + LT H V K A+ LR++ ++ + L++
Sbjct: 346 YIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE--LIGKHAIPNLVKN 403
Query: 301 IDCNGGYNSLP--------AIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352
+ +S + + + A++ + A+++ E QG+ L I + ++ + +
Sbjct: 404 LPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKE 463
Query: 353 VAAAWTL 359
V AA +
Sbjct: 464 VRAAALV 470
Score = 49.2 bits (116), Expect = 2e-06
Identities = 38/228 (16%), Positives = 65/228 (28%), Gaps = 2/228 (0%)
Query: 235 DIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGL 294
D + + L + V+ NAA L+ +C N ++ V G+
Sbjct: 33 DSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGI 92
Query: 295 DGLLRLIDCNGGYNSLPAIMALGYMS-AQSEQIAEQIIELQGVGSLQTILQCPHKEQLQV 353
L+ L+D L A AL +S + + I GV +L +L+ L
Sbjct: 93 PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE 152
Query: 354 AAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENP 413
TL + H + + T I + CK N
Sbjct: 153 VITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNT 212
Query: 414 KELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQE 461
+ + SE C + + + K+ E
Sbjct: 213 AGCLRNVSSERSEARRKLRECDGL-VDALIFIVQAEIGQKDSDSKLVE 259
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 68.8 bits (168), Expect = 2e-13
Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 19/198 (9%)
Query: 123 EDKDLDSIISSLH--DFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ 180
+ L+ +S L P + AA + +R+ Q + L+Q+L
Sbjct: 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65
Query: 181 LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALN-NDEVNVKADAFLCLADIAKD 239
++ A AL +V + ++ + +P L++ L ++ K L +++ +
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
Query: 240 SPSLASTIADGATTLAVEHLTYPHGL---------------VQKNAATLLRDMCKHNLRL 284
I + TL + G + N LR+M
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185
Query: 285 ANLVVLAGGL-DGLLRLI 301
+ GL D L+ +
Sbjct: 186 RKAMRRCDGLIDSLVHYV 203
Score = 38.0 bits (88), Expect = 0.004
Identities = 20/201 (9%), Positives = 54/201 (26%), Gaps = 17/201 (8%)
Query: 211 IPLLIKAL--NNDEVNVKADAFLCLADIAKDSPSLASTIAD-GATTLAVEHLTYPHGLVQ 267
+ + L ++ + + A + + ++ L + VQ
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 268 KNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIA 327
+ LR++ + V G+ LL+++ + I L + + ++++
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 328 EQIIE--------------LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL 373
+I + L + D A+
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189
Query: 374 CEENVLSTLLSKITQTCVSDN 394
+ L L + ++D
Sbjct: 190 RRCDGLIDSLVHYVRGTIADY 210
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 66.4 bits (162), Expect = 2e-12
Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 41/249 (16%)
Query: 119 AGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILAS 178
+ + D + L D + R ++A L A+ ++ +
Sbjct: 17 YNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSD 65
Query: 179 PQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
+ AF L I ++ + D L ALN+ V+A A A K
Sbjct: 66 KNYIRRDIGAFILGQI-----KICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK 120
Query: 239 DSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLL 298
+P + I + + V++ A + + + L+ L +G +
Sbjct: 121 KNPIYSPKIVE----QSQITAFDKSTNVRRATAFAISVI-NDKATIPLLINLLKDPNGDV 175
Query: 299 RLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWT 358
R A A+ + I + +E+ LQ + E++++ A
Sbjct: 176 RNW----------AAFAININKYDNSDIRDCFVEM---------LQDKN-EEVRIEAIIG 215
Query: 359 LGQIGKHSV 367
L V
Sbjct: 216 LSYRKDKRV 224
Score = 64.8 bits (158), Expect = 8e-12
Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 32/216 (14%)
Query: 37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
+ V L + +DK + LG++ K + + + L + L D +
Sbjct: 50 RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVFNILNNMALND---K 103
Query: 97 NKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN 156
+ + TA+ +++ + K ++ + D + R A A+ +
Sbjct: 104 SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK- 158
Query: 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIK 216
+P L+ +L P +++ AAFA++ + + + ++
Sbjct: 159 ----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVE 199
Query: 217 ALNNDEVNVKADAFLCLADIAKDS--PSLASTIADG 250
L + V+ +A + L+ L +
Sbjct: 200 MLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN 235
Score = 32.8 bits (75), Expect = 0.21
Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 36/158 (22%)
Query: 36 FLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTK 95
+ D + L++ LL D +++ A + + ++ ++ L
Sbjct: 154 VINDKATIPLLINLLKDPNGDVRNWAAFAINI----------NKYDNSDIRDCFVEMLQD 203
Query: 96 QNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAK 154
+N+ + A+ L +DK L + L + A G L
Sbjct: 204 KNEEVRIEAIIGL-----------SYRKDKRVLSVLCDELK--KNTVYDDIIEAAGELGD 250
Query: 155 DNKHFAERIVQCGALPPLVQILASPQ-LSLKHAAAFAL 191
LP L +L + +A L
Sbjct: 251 K-----------TLLPVLDTMLYKFDDNEIITSAIDKL 277
Score = 28.6 bits (64), Expect = 4.9
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 27/111 (24%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
+ D V +L DK ++ A+ L + + + + L++N V
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTV--------------Y 238
Query: 102 KTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDF-DPDTRANAALALG 150
+ G + DK L + + L+ F D + +A L
Sbjct: 239 DDIIEAA-----------GELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 63.5 bits (155), Expect = 1e-11
Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 56/233 (24%)
Query: 43 VDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKK 102
V++ + L D ++ AA LGK+ + V+ L+ LKD ++ ++
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP--------LIKA-LKD---EDAWVRR 68
Query: 103 TALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
A L G I D+ ++ +I +L D D R +AA+ALG + +
Sbjct: 69 AAADAL-----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER----- 112
Query: 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
A+ PL++ L ++ AAAFAL I D + LIKAL ++
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEI-----------GDERAVEPLIKALKDE 155
Query: 222 EVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
+ V+ A L +I + + G +K A L
Sbjct: 156 DGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYL 198
Score = 58.9 bits (143), Expect = 4e-10
Identities = 48/246 (19%), Positives = 83/246 (33%), Gaps = 56/246 (22%)
Query: 119 AGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILA 177
A L D + ++ I +L D R AA ALG + + A+ PL++ L
Sbjct: 12 APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALK 60
Query: 178 SPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIA 237
++ AAA AL I D + LIKAL +++ V+ A + L I
Sbjct: 61 DEDAWVRRAAADALGQI-----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109
Query: 238 KDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGL 297
+ A ++ L V+ AA L ++ + L+ DG
Sbjct: 110 ----------DERAVEPLIKALKDEDWFVRIAAAFALGEI-GDERAVEPLIKALKDEDGW 158
Query: 298 LRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAW 357
+R A ALG + + + +++ + + + A
Sbjct: 159 VRQS----------AADALGEIGGE-----------RVRAAMEKLAETGT-GFARKVAVN 196
Query: 358 TLGQIG 363
L
Sbjct: 197 YLETHK 202
Score = 46.6 bits (111), Expect = 4e-06
Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 35/159 (22%)
Query: 37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
+ D V+ ++ L D+ ++ +A LG++ + V+ L+ LKD +
Sbjct: 77 IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEP--------LIKA-LKD---E 124
Query: 97 NKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
+ + A L G I D+ ++ +I +L D D R +AA ALG + +
Sbjct: 125 DWFVRIAAAFAL-----------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE 173
Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
+ ++ + + A L+
Sbjct: 174 -----------RVRAAMEKLAETGTGFARKVAVNYLETH 201
Score = 33.5 bits (77), Expect = 0.094
Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 44/184 (23%)
Query: 201 LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS--PSLASTIADG-------- 250
A +D + + + IK L +D V+ A L I + L + D
Sbjct: 11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAA 70
Query: 251 ATTLA-----------VEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLR 299
A L ++ L G V+++AA L + ++ L++
Sbjct: 71 ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIK 119
Query: 300 LIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTL 359
+ + + A ALG + E+ E +I+ L+ ++ +AA L
Sbjct: 120 ALKDEDWFVRIAAAFALGEI--GDERAVEPLIKA---------LKDED-GWVRQSAADAL 167
Query: 360 GQIG 363
G+IG
Sbjct: 168 GEIG 171
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 63.1 bits (154), Expect = 1e-11
Identities = 54/239 (22%), Positives = 90/239 (37%), Gaps = 56/239 (23%)
Query: 37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
D V++ + L D ++ AA LGK+ + V+ L+ LKD +
Sbjct: 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP--------LIKA-LKD---E 57
Query: 97 NKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
+ ++ A L G I D+ ++ +I +L D D R +AA+ALG + +
Sbjct: 58 DAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE 106
Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLI 215
A+ PL++ L ++ AAAFAL I D + LI
Sbjct: 107 R-----------AVEPLIKALKDEDWFVRIAAAFALGEI-----------GDERAVEPLI 144
Query: 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
KAL +++ V+ A L +I + + G +K A L
Sbjct: 145 KALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYL 193
Score = 58.1 bits (141), Expect = 6e-10
Identities = 45/241 (18%), Positives = 80/241 (33%), Gaps = 55/241 (22%)
Query: 123 EDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLS 182
+ + ++ I +L D R AA ALG + + A+ PL++ L
Sbjct: 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------RAVEPLIKALKDEDAW 60
Query: 183 LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
++ AAA AL I D + LIKAL +++ V+ A + L I
Sbjct: 61 VRRAAADALGQI-----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIG----- 104
Query: 243 LASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLID 302
+ A ++ L V+ AA L ++ L+ DG +R
Sbjct: 105 -----DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEP-LIKALKDEDGWVRQS- 157
Query: 303 CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQI 362
A ALG + + + +++ + + + A L
Sbjct: 158 ---------AADALGEIGGE-----------RVRAAMEKLAETGT-GFARKVAVNYLETH 196
Query: 363 G 363
Sbjct: 197 K 197
Score = 46.9 bits (112), Expect = 3e-06
Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 35/159 (22%)
Query: 37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
+ D V+ ++ L D+ ++ +A LG++ + V+ L+ LKD +
Sbjct: 72 IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEP--------LIKA-LKD---E 119
Query: 97 NKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALGGLAKD 155
+ + A L G I D+ ++ +I +L D D R +AA ALG + +
Sbjct: 120 DWFVRIAAAFAL-----------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE 168
Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGI 194
+ ++ + + A L+
Sbjct: 169 -----------RVRAAMEKLAETGTGFARKVAVNYLETH 196
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 61.3 bits (148), Expect = 5e-10
Identities = 38/332 (11%), Positives = 108/332 (32%), Gaps = 36/332 (10%)
Query: 115 DERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQ 174
++ + + + +H+ P+ + + + + + + Q GA+ +++
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILE 505
Query: 175 ILASPQ---LSLKHAAAFALDGI-VKHSPELAESASDC-DVIPLLIKALNNDEVNVKA-- 227
LA+ Q ++ AL + + +P L + IP L + L
Sbjct: 506 YLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565
Query: 228 ------------DAFLCLADIAKDSPSLASTIA------DGATTLAVEHLTYPHGLVQKN 269
+A L L ++A S + + + + +Q++
Sbjct: 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625
Query: 270 AATLLRDMCKHNLRLANLVVLAGG------LDGLLRLIDCNGGYNSLPAIMALGYMSAQS 323
L+ +M H L +A + L++L+ + + ++
Sbjct: 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685
Query: 324 EQIAEQIIEL-QGVGSLQTILQCPHKE-QLQVAAAWTLGQIGKHSVDNVTALCEENVLST 381
IA++++ + + + + + +L+ + + DN T +
Sbjct: 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQEN 745
Query: 382 --LLSKITQTCVSDNLKSKCKNALNILIPKCE 411
L + + + + A+ +++ K +
Sbjct: 746 QKLKDALNMSLKRGDSGPEFSAAIPVILAKIK 777
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 60/344 (17%), Positives = 101/344 (29%), Gaps = 115/344 (33%)
Query: 12 HYQRARLCFVQTMSAFADKPS--TIHFLKDLNVVDLIVPLL---ADKVPSIQHAALATLG 66
HY T T H L+ + D S + +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGH------SQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 67 KLMCAKHVDIR-QEVL-ERNLVALVLKDLTKQNKHYKKTALHMLTC--VAQQ------DE 116
L + +R E +L +L+D + N+ ML+ + Q+ ++
Sbjct: 302 VLF---FIGVRCYEAYPNTSLPPSILEDSLENNE---GVPSPMLSISNLTQEQVQDYVNK 355
Query: 117 RCAGLIEDKDL--------DSII-----SSLHDFDPDTRANAALALGGLAKDNKHFAERI 163
+ L K + +++ SL+ + R A + GL + F+ER
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--GLDQSRIPFSERK 413
Query: 164 VQCGA--LPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
++ LP +ASP F HS L L+ K L +
Sbjct: 414 LKFSNRFLP-----VASP---------F-------HSHLLV------PASDLINKDLVKN 446
Query: 222 EVNVKADAFLCLA----------DIAKDSPSLASTIADGATTLAVE-----HLTYPH--- 263
V+ A + D+ S S++ I D L V+ H
Sbjct: 447 NVSFNAKD---IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 264 ----------GLVQKNA-ATLLRDMCKHNLRLANLVVLAGGLDG 296
L +N T +R V++AG LD
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVR------------VIVAGTLDI 535
Score = 56.6 bits (136), Expect = 2e-08
Identities = 56/318 (17%), Positives = 95/318 (29%), Gaps = 101/318 (31%)
Query: 71 AKHV-----DIRQEVLERNLVALVL---KDLTKQNKHYKKTALHM----LTCVAQQDERC 118
A+ V + ++ +++ +V+ +LT K + + D +
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 119 AGLIEDKDLDSIISSLHDFDPD-----TRANA--ALALGGLAKDNKHFAERIVQCGALPP 171
K+++ +S T AL L A E + G +P
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLMEKA-----AFEDLKSKGLIPA 1755
Query: 172 LVQILASPQLSLKHAAAFALDGIVKHSPELAE-SA--SDCDVIPL-----LIKA---LNN 220
A FA G HS L E +A S DV+ + ++
Sbjct: 1756 --------------DATFA--G---HS--LGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 221 DEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHG-LVQKNAATLLRDMCK 279
V IA + +A++ + A VE + G LV+
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE------------ 1842
Query: 280 HNLRLANL------VVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIEL 333
+ N V AG L L + + L ++ Q I IIEL
Sbjct: 1843 ----IVNYNVENQQYVAAGDLRALDTVTNV------------LNFIKLQK--I--DIIEL 1882
Query: 334 QGVGSLQTILQCPHKEQL 351
Q SL+ + + L
Sbjct: 1883 QKSLSLEEV-----EGHL 1895
Score = 45.8 bits (108), Expect = 3e-05
Identities = 42/304 (13%), Positives = 85/304 (27%), Gaps = 98/304 (32%)
Query: 226 KADAFLC------LADIAKDSPSLASTIADGATTLAVEHLTYPHGL-VQKNAATLLRDMC 278
+AD + DI ++P L + H G +++N + ++ +
Sbjct: 1648 RADNHFKDTYGFSILDIVINNP----------VNLTI-HFGGEKGKRIRENYSAMIFETI 1696
Query: 279 KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL-------PAIMALGYMSAQSEQIAEQII 331
+ ++ L PA+ + A E + +
Sbjct: 1697 VDGKLKTEKIF--KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK--AAFEDLKSK-- 1750
Query: 332 ELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL-CEENVLSTLLSKITQTC 390
G+ A G HS+ AL +V+S
Sbjct: 1751 ---GL------------IPADATFA------G-HSLGEYAALASLADVMS---------- 1778
Query: 391 VSDNLKSKCK--NALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARR 448
+ ++ + + +P+ E + M+ N +A+ A + V +R
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR--VAASFSQEALQYVVERVGKR 1836
Query: 449 S--FVTSHCLRKVQEIEPTPEIAPHLKTINACFPNE--VI--HFVSPHYLEDLINRLDQF 502
+ V EI + N N+ V + L+ + N L+
Sbjct: 1837 TGWLV---------------EIVNY----NV--ENQQYVAAGDLRA---LDTVTNVLNFI 1872
Query: 503 NPQK 506
QK
Sbjct: 1873 KLQK 1876
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 51.9 bits (125), Expect = 2e-08
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 33/151 (21%)
Query: 125 KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLK 184
L S + D + R + + AL + + A PL++ L++ ++
Sbjct: 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIR 59
Query: 185 HAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLA 244
AAA+ + D + LIK L +D V++ A L I
Sbjct: 60 GAAAWIIGNF-----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIG------- 101
Query: 245 STIADGATTLAVEHLTYPHGLVQKNAATLLR 275
+ + G +K A L
Sbjct: 102 ---GERVRAAMEKLAETGTGFARKVAVNYLE 129
Score = 47.7 bits (114), Expect = 5e-07
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 22/110 (20%)
Query: 120 GLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASP 179
+ D+ + ++ SL + D R AA +G ER A+ PL+++L
Sbjct: 37 SRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQ------DER-----AVEPLIKLLEDD 85
Query: 180 QLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADA 229
++ AA +L+ I V + K + A
Sbjct: 86 SGFVRSGAARSLEQI-----------GGERVRAAMEKLAETGTGFARKVA 124
Score = 45.4 bits (108), Expect = 4e-06
Identities = 21/162 (12%), Positives = 52/162 (32%), Gaps = 36/162 (22%)
Query: 32 STIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91
S+ H + + +AD+ ++ L + + E E L+ L
Sbjct: 3 SSHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSR--------MGDEAFEP-LLES-LS 52
Query: 92 DLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALG 150
+ ++ + A ++ G +D+ ++ +I L D R+ AA +L
Sbjct: 53 N---EDWRIRGAAAWII-----------GNFQDERAVEPLIKLLEDDSGFVRSGAARSLE 98
Query: 151 GLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALD 192
+ + + ++ + + A L+
Sbjct: 99 QIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLE 129
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 55.5 bits (133), Expect = 3e-08
Identities = 48/353 (13%), Positives = 116/353 (32%), Gaps = 47/353 (13%)
Query: 139 PDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQ---------------LSL 183
D R NA AL L+K + V A+ L+ +L + + +
Sbjct: 36 LDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIIS 91
Query: 184 KHAAAFALDGIVKHSPELAESASDC-----DVIPLLIKALNNDEVNVKADAFLCLADIAK 238
+ + S +L ++ + + LL+ L + +V+ L + K
Sbjct: 92 NDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLK 151
Query: 239 DSPSLAS----TIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGL 294
G + L ++ L +++ + LL+ + + N + +V
Sbjct: 152 QLGPQVQQIILVSPMGVSRL-MDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAF 210
Query: 295 DGLLRLID----CNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQ 350
+ LL +I +GG ++ L + + E + ++ + +
Sbjct: 211 ERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS 270
Query: 351 LQ----VAAAWTLGQIGKHSVD----------NVTALCEENVLSTLLSKITQTCVSDNLK 396
V + Q+ + V A+ + +L L + + T V ++
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330
Query: 397 SKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRS 449
++ N ++ +I C+ ++ + + A ++ + + P R
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRC 383
Score = 45.1 bits (106), Expect = 5e-05
Identities = 58/456 (12%), Positives = 136/456 (29%), Gaps = 59/456 (12%)
Query: 36 FLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNL-VALVLKDLT 94
F+K V L++ LL + ++ + L L+ ++Q +L + V+ ++ L
Sbjct: 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176
Query: 95 KQNKHYKKTALHMLTCVAQQDERCAGLIE-----DKDLDSIISSLHDFDPDTRANAALAL 149
+ + + +L + + + ++ ++ LD I + + + L
Sbjct: 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236
Query: 150 GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAA---------------FALDGI 194
L K+N + + + + +A + +
Sbjct: 237 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296
Query: 195 VKHSPELAESASDCDVIPLLIKAL--NNDEVNVKADAFLCLADIAKDSPSLASTIAD--- 249
+ ++ C ++ L L ++ + ++++ + A
Sbjct: 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 356
Query: 250 -------GATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDG------ 296
L + + V + A + + +++ L
Sbjct: 357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG 416
Query: 297 -----LLRLIDCNGGYNSLP---AIMALGYMSAQSEQIAEQIIELQ--------GVGSLQ 340
L +SL A +AL + ++ EQ++ +Q V LQ
Sbjct: 417 NTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ 476
Query: 341 TI---LQCPHKEQLQVAAAWTLGQIGKHSVDNVTA-LCEENVLSTLLSKITQTCVSDNLK 396
L K Q +V L + VT L + L +I + +
Sbjct: 477 QCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQL 536
Query: 397 SKCKNALNILIPKCENPKELEQMLLGNVSEELLASI 432
+ AL + I N LE + + + + I
Sbjct: 537 VQGLCALLLGISIYFNDNSLETYMKEKLKQLIEKRI 572
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 55.0 bits (132), Expect = 4e-08
Identities = 57/389 (14%), Positives = 133/389 (34%), Gaps = 42/389 (10%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
+ L +D P ++ AA + LG+ + + ++ ++ + + + +
Sbjct: 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKV----LELDNVKSEIIPMFSNLASDEQDSVR 220
Query: 102 KTALHMLTCVAQQ--DERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHF 159
A+ +AQ E L+ + ++ + D R A L K
Sbjct: 221 LLAVEACVNIAQLLPQEDLEALV----MPTLRQAAEDKSWRVRYMVADKFTELQK---AV 273
Query: 160 AERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH-SPELAESASDCDVIPLLIKAL 218
I + +P ++ + ++ AA+ + ++ S + E+ ++P + + +
Sbjct: 274 GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333
Query: 219 NNDEVNVK---ADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLR 275
++ +VK A + L+ I ++ + L + L V+ N + L
Sbjct: 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLP-----LFLAQLKDECPEVRLNIISNLD 388
Query: 276 DMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQ--SEQIAEQIIEL 333
+ + L L ++ L + L I + ++ Q E E++ L
Sbjct: 389 CVNEVIGIRQLSQSL---LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
Query: 334 QGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSD 393
L H ++ AA L ++ + +E +T++ K+
Sbjct: 446 -----CMAWL-VDHVYAIREAATSNLKKLVEK-------FGKEWAHATIIPKVLAMSGDP 492
Query: 394 NLKSK--CKNALNILIPKCENPKELEQML 420
N + +N+L C + ML
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKHML 521
Score = 53.1 bits (127), Expect = 2e-07
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 11/184 (5%)
Query: 11 DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMC 70
D R RL ++ M A + F + L L + L D V +I+ AA + L KL+
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKL--NSLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 71 AKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI 130
+E ++ VL N ++ T L + +++ + + L ++
Sbjct: 471 K----FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTV 524
Query: 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFA 190
+ D + R N A +L + +Q P L ++ + +K+ A A
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEA 581
Query: 191 LDGI 194
L +
Sbjct: 582 LTVL 585
Score = 44.6 bits (105), Expect = 7e-05
Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 14/228 (6%)
Query: 11 DHYQRARLCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMC 70
D Q + + + + ++ L + L + L D+ P ++ ++ L +
Sbjct: 335 DANQHVKSALASVIMGLSPILGKDNTIEHL--LPLFLAQLKDECPEVRLNIISNLDCVNE 392
Query: 71 AKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSI 130
+ + +L+ +++ + + + +A Q ++K
Sbjct: 393 VIGIRQLSQ----SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ--LGVEFFDEKLNSLC 446
Query: 131 ISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFA 190
++ L D R A L L + F + +P ++ + P + F
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVE---KFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503
Query: 191 LDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAK 238
++ + + + ++P +++ + NV+ + L I
Sbjct: 504 INVLS---EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 61/398 (15%), Positives = 129/398 (32%), Gaps = 108/398 (27%)
Query: 1 MSRKSVKNS---IDHYQRARLCFVQTMSAFADKPSTIHFL---KDLNVVDLIVPLLADKV 54
+ K +N + + Q A+ +AF + I L + V D + +
Sbjct: 238 LKSKPYENCLLVLLNVQNAK-----AWNAF-NLSCKI--LLTTRFKQVTDFLSAATTTHI 289
Query: 55 PSIQHAALATLGKL--MCAKHVDIRQEVLER----------NLVALVLKDLTKQNKHYKK 102
H+ T ++ + K++D R + L R +++A ++D ++K
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSII-SSLHDFDP-DTRAN-AALALGGLAKDNKHF 159
+ L +II SSL+ +P + R L++
Sbjct: 350 -------------------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAH-- 386
Query: 160 AERIVQCGALPPLV-QIL------ASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIP 212
+P ++ ++ + + + ++L + K E S +
Sbjct: 387 ---------IPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIY-LE 434
Query: 213 LLIKALNNDEVNVKA-DAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAA 271
L +K N ++ D + DS L D H+ + H L
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPK--TFDSDDLIPPYLDQ---YFYSHIGH-H-LKNIEHP 487
Query: 272 ---TLLRDM------CKHNLRLANLVVLAGG--LDGLLRLIDCNGGYNSLPAIMALGYMS 320
TL R + + +R + A G L+ L +L Y Y+
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----YKP--------YIC 535
Query: 321 AQS---EQIAEQIIE-LQGVGSLQTILQCPHKEQLQVA 354
E++ I++ L + + ++ + + L++A
Sbjct: 536 DNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIA 571
Score = 50.6 bits (120), Expect = 1e-06
Identities = 63/480 (13%), Positives = 126/480 (26%), Gaps = 171/480 (35%)
Query: 106 HMLTCVAQQDERCAGLIED------KDLD---------SIISSLHDFD-----PDTRANA 145
HM + + ++ + D SI+S + D D +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKD-AVSG 63
Query: 146 ALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESA 205
L L + E +VQ F + + + L
Sbjct: 64 TLRLFWTLLSKQ---EEMVQ----------------------KFVEEVLRINYKFLMSPI 98
Query: 206 SDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGL 265
P ++ + ++ + + D+ A + +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDR----------LYNDNQVFA-----------------KYNV 131
Query: 266 VQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALG-------- 317
+ LR LR A V++ G L G G + A+
Sbjct: 132 SRLQPYLKLRQALL-ELRPAKNVLIDGVL-G------S--GKTWV-ALDVCLSYKVQCKM 180
Query: 318 -----YMSAQSEQIAEQIIE-LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVT 371
+++ ++ E ++E LQ L + + ++ K + ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSN------IKLRIHSI- 230
Query: 372 ALCEENVLSTLL-SKITQTC--VSDNLKSK---------CK--------NALNILIPKCE 411
+ L LL SK + C V N+++ CK + L
Sbjct: 231 ----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 412 NPKELEQMLLGNVSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAP- 470
L+ + +E+ + K L C P L + E+ P
Sbjct: 287 THISLDHHSMTLTPDEVKS----LLLKYLDCRP---------QDLPR--EVL---TTNPR 328
Query: 471 HLKTINACFPNEVIHF-VSPHYLEDLINR-----LDQFNP-------------QKSSNLP 511
L I + + + H D + L+ P S+++P
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Score = 29.1 bits (64), Expect = 5.5
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 6 VKNSIDHYQRARLCFVQTMSAFAD----KPSTIHFLKDLNVVDLIVPLLADKVPSIQHAA 61
++ I H A ++ KP + + + +V + D +P I+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDNDPKYERLVNAILDFLPKIEE-- 557
Query: 62 LATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQ 96
L+C+K+ D+ + L + ++ KQ
Sbjct: 558 -----NLICSKYTDLLRIALM-AEDEAIFEEAHKQ 586
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 47.9 bits (113), Expect = 7e-06
Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 9/195 (4%)
Query: 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQD 115
+++ + A L L ++ +L L+ + L K++ + +L +A+
Sbjct: 336 NLRKCSAAALDVLANVYRDELLPHILP-----LLKELLFHHEWVVKESGILVLGAIAEGC 390
Query: 116 ERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQI 175
+ + + +I L D R+ L A + L++
Sbjct: 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKR 450
Query: 176 LASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKA---DAFLC 232
+ ++ AA A + + + ++ L+ A + + DA
Sbjct: 451 ILDSNKRVQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGT 509
Query: 233 LADIAKDSPSLASTI 247
LAD + I
Sbjct: 510 LADSVGHHLNKPEYI 524
Score = 45.6 bits (107), Expect = 3e-05
Identities = 44/381 (11%), Positives = 117/381 (30%), Gaps = 40/381 (10%)
Query: 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALV---LKDLTKQN 97
+++ + LL + + A L K+ + +VL+R L ++ L+ +
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS 187
Query: 98 KHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDN- 156
+ A+ + + L D ++++ + D +P+ R N AL L +
Sbjct: 188 PKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM 247
Query: 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESAS-DCDVIPLLI 215
+ + ++Q ++ A + + +IP+L+
Sbjct: 248 DRLLPHMHNI--VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305
Query: 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLR 275
+ ++++ D + + + + LL+
Sbjct: 306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLK 365
Query: 276 DMCKHN---LRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIE 332
++ H+ ++ + I+ LG ++ Q +
Sbjct: 366 ELLFHHEWVVKES--------------------------GILVLGAIAEGCMQGMIPYLP 399
Query: 333 LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVS 392
+ + L L ++ WTL + V + +++ LL +I + +
Sbjct: 400 -ELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--N 455
Query: 393 DNLKSKCKNALNILIPKCENP 413
++ +A L +
Sbjct: 456 KRVQEAACSAFATLEEEACTE 476
Score = 42.5 bits (99), Expect = 4e-04
Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 25/352 (7%)
Query: 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHY 100
++ ++ L+DK ++ TL + V + + L+ +LK + NK
Sbjct: 400 ELIPHLIQCLSDKKALVRSITCWTLSR-YAHWVVSQPPDTYLKPLMTELLKRILDSNKRV 458
Query: 101 KKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160
++ A + ++ LD+++ + + A+G LA H
Sbjct: 459 QEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518
Query: 161 ERIVQCGAL-PPLVQILASPQLSLKH-AAAFALDGIVKHSPELAESASDCDVIPLLIKAL 218
+ L PPL+Q + K V + + V + +
Sbjct: 519 NKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLV 578
Query: 219 NN-----------------DEVNVKADAFLCLADIAKDSPSLASTIADGAT--TLAVEHL 259
+ + A L+ +A+ + + TL + +
Sbjct: 579 QKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM 638
Query: 260 TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNSLPAIMALGYM 319
V++++ LL D+ K +A + L ++ A A+G +
Sbjct: 639 QDKMPEVRQSSFALLGDLTKA-CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEI 697
Query: 320 SAQSEQIAEQIIELQGVGSLQTILQCPH-KEQLQVAAAWTLGQIGKHSVDNV 370
S Q + I + L I+ P+ + L A T+G++G V
Sbjct: 698 SIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748
Score = 39.8 bits (92), Expect = 0.002
Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 10/153 (6%)
Query: 89 VLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALA 148
+LK+ + ++T L + Q + LI +++ L D TR+ + L
Sbjct: 18 LLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIF------VLTKLKSEDEPTRSLSGLI 71
Query: 149 LGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDC 208
L K + V + + ++ + I
Sbjct: 72 LKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWP---- 127
Query: 209 DVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241
D++P L L++++ N AF L I +DS
Sbjct: 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 160
Score = 34.4 bits (78), Expect = 0.10
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 129 SIISSLHDFDPDTRANAALALGGLAKD--NKHFAERIVQCGALPPLVQILASPQLSLKHA 186
++++ D P RA + + +A +++ + LP L +L S +
Sbjct: 94 ECLNNIGDSSPLIRATVGILITTIASKGELQNWPD------LLPKLCSLLDSEDYNTCEG 147
Query: 187 AAFALDGIVKHSPELAES----ASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSP 241
A AL I + S E+ +S +IP ++ + +++ A C+
Sbjct: 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 47.1 bits (111), Expect = 1e-05
Identities = 38/288 (13%), Positives = 87/288 (30%), Gaps = 26/288 (9%)
Query: 15 RARLCFVQTMSAFADKPSTIHFLKDLN-VVDLIVPLLADKVPSIQHAALATLGKLMCAKH 73
R R V + D P + ++ + I+ L+ D+ ++ +G++ +
Sbjct: 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443
Query: 74 VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISS 133
I + +V L L + + + + +Q +++
Sbjct: 444 ESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDG 502
Query: 134 L------HDFDPDTRANAALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQ------ 180
L D + + RA+A AL + + AE ++ L
Sbjct: 503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI--STFVMDKLGQTMSVDENQ 560
Query: 181 ------LSLKHAAAFALDGIVKHSPELAESASDC--DVIPLLIKALNN-DEVNVKADAFL 231
SL+ + L + + S ++ L + L D ++ D F
Sbjct: 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620
Query: 232 CLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCK 279
++ +A + + ++ L V A + D+
Sbjct: 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN 668
Score = 44.0 bits (103), Expect = 1e-04
Identities = 35/282 (12%), Positives = 79/282 (28%), Gaps = 23/282 (8%)
Query: 19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHA--ALATLGKLMCAKHVDI 76
C + + A+ L VV + L D + + L + +
Sbjct: 434 CIGRIADSVAESIDPQQHLP--GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSP 491
Query: 77 RQEVLERNLVALVLKDLTKQNKHY-KKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLH 135
+ L+ N+ + +A LT + + ++ L
Sbjct: 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLG 551
Query: 136 DF------------DPDTRANAALALGGLAKDNKHFAERIVQCGA--LPPLVQILASPQL 181
+ + L LA + + + ++L
Sbjct: 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDS 611
Query: 182 SLKHAAAF-ALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDS 240
+ F A+ + + E + P L+KALN + V A +ADI+
Sbjct: 612 AFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSL 670
Query: 241 PSLASTIADGATTLAVEHLTYP--HGLVQKNAATLLRDMCKH 280
+D + + ++ P ++ ++ D+ +
Sbjct: 671 EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712
Score = 41.7 bits (97), Expect = 7e-04
Identities = 44/384 (11%), Positives = 117/384 (30%), Gaps = 34/384 (8%)
Query: 44 DLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLER-NLVALVLKDLTKQNKHYKK 102
+ P + + ++ A + + + + +E + + D+ + + +
Sbjct: 257 TFMKPYMEQALYALTIATMKSP-------NDKVASMTVEFWSTICEEEIDIAYELAQFPQ 309
Query: 103 TALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162
+ L + +L ++++ ++ D N +++ G +
Sbjct: 310 SPLQSYNFALSSIKD-----VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN 364
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
+ L + Q + + + AA A I+ ++ + +P ++ +N+
Sbjct: 365 HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS 424
Query: 223 VNVKADAFLCLADIAKDSPSLAST--IADGATTLAVEHLTYPHGLVQKNAATL--LRDMC 278
+ VK C+ IA G + L + + T+ L +
Sbjct: 425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQL 484
Query: 279 KHNLRLANLVVLAGGLDGLLRLIDCNGGYNSL--PAIMALGYMSAQSEQIAEQIIE---- 332
+DGL+ + + A AL M + +
Sbjct: 485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544
Query: 333 ---------LQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLL 383
+ + T+ ++LQ L + + S +V + + L L
Sbjct: 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM--LMGLF 602
Query: 384 SKITQTCVSDNLKSKCKNALNILI 407
++ + S ++ A++ L
Sbjct: 603 FRLLEKKDSAFIEDDVFYAISALA 626
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 40.1 bits (94), Expect = 0.002
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 9/131 (6%)
Query: 90 LKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALAL 149
+KD N + A+ + C+ R + E + + L D DP R AA+
Sbjct: 92 VKDCEDPNPLIRALAVRTMGCI-----RVDKITEYL-CEPLRKCLKDEDPYVRKTAAVC- 144
Query: 150 GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCD 209
+AK + A+ + G L L ++A + A AL I + P +
Sbjct: 145 --VAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQ 202
Query: 210 VIPLLIKALNN 220
I L+ ALN
Sbjct: 203 NINKLLTALNE 213
Score = 34.3 bits (79), Expect = 0.097
Identities = 59/396 (14%), Positives = 133/396 (33%), Gaps = 64/396 (16%)
Query: 32 STIHFLKDLNVVDLIVPL-------LADKVPSI-QHAALATLGKLMCAKHVDIRQEVLER 83
+ + + V + L L D+ P + + AA+ AK DI +++E
Sbjct: 105 LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVC------VAKLHDINAQMVED 158
Query: 84 NLVALVLKDLTKQNKHY-KKTALHMLTCVAQQDERCAGL-IEDKDLDSIISSLHDFDPDT 141
L+DL + A+ L+ +++ L + ++++ ++++L++
Sbjct: 159 QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWG 218
Query: 142 RANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPEL 201
+ L + A+ I + L+ ++ +A L ++ P+
Sbjct: 219 QIFILDCLSNYNPKDDREAQSI-----CERVTPRLSHANSAVVLSAVKVLMKFLELLPKD 273
Query: 202 AESASDC-DVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIAD----------G 250
++ + + + L + E V+ A + I + P +
Sbjct: 274 SDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIY 333
Query: 251 ATTLAVEHLTYPHGLV-QKNAATLLRDMCKH----NLRLANLVVLAGG------------ 293
++ + L Q N A +L ++ ++ ++ V A G
Sbjct: 334 VKLEKLDIMI---RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER 390
Query: 294 -LDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352
+ LL LI Y AI+ + + + E II +L L + +
Sbjct: 391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIA-----TLCENLDSLDEPDAR 445
Query: 353 VAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQ 388
A W +G+ +DN + +L + L
Sbjct: 446 AAMIWIVGEYA-ERIDNA-----DELLESFLEGFHD 475
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 38.8 bits (90), Expect = 0.002
Identities = 22/144 (15%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
V ++ +K P++ A + + + ++ +++ L+ +N K
Sbjct: 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE--------AQQESIVESLSNKNPSVK 150
Query: 102 KTALHMLTCVAQQDERCAGLIEDKD--LDSIISSLHDFDPDTRANAALALGGLAKDNKHF 159
+ + + A + S++ +L++ DP R ++A ALG L K
Sbjct: 151 SETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLI---KLM 207
Query: 160 AERIVQCGALPPLVQILASPQLSL 183
++ A+ PL+ + +++
Sbjct: 208 GDK-----AVTPLLADVDPLKMAK 226
Score = 34.6 bits (79), Expect = 0.051
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 9/160 (5%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
V L + D + A L L + L + K+ K
Sbjct: 58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA---SACVPSLLEKFKEKKPNV 114
Query: 102 KTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGG-LAKDNKHFA 160
TAL E I+ SL + +P ++ AL + L +
Sbjct: 115 VTALREAIDAIYASTSLEAQQES-----IVESLSNKNPSVKSETALFIARALTRTQPTAL 169
Query: 161 ERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200
+ + LV+ L P +++ ++A AL ++K +
Sbjct: 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209
Score = 31.5 bits (71), Expect = 0.48
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 15/209 (7%)
Query: 36 FLKDLNVVDLIVPLLADKVPS----IQHAALATLGKLMCAKHVDIRQEVLERNLVALVLK 91
L ++++ + DK+ ++ +L L K + H + LV+ + K
Sbjct: 6 LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEK-LLTDHPKLENGEYG-ALVSALKK 63
Query: 92 DLTK-QNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALG 150
+TK N A L +A+ + + S++ + P+ A+
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 151 GLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIV-KHSPELAESASDCD 209
+ A +V+ L++ S+K A + + + P
Sbjct: 124 AIYASTSLEA-------QQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKL 176
Query: 210 VIPLLIKALNNDEVNVKADAFLCLADIAK 238
+ L+K LN + V+ + L + K
Sbjct: 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIK 205
Score = 28.4 bits (63), Expect = 5.2
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 19 CFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLM 69
+ ++ LK L +V L + P+++ ++ LG L+
Sbjct: 156 FIARALTRTQPTALNKKLLKLL--TTSLVKTLNEPDPTVRDSSAEALGTLI 204
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 39.1 bits (91), Expect = 0.003
Identities = 36/249 (14%), Positives = 81/249 (32%), Gaps = 39/249 (15%)
Query: 187 AAFALDGIVK-HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAS 245
AL + S E+ D+ + K L ++ A LC + + P L
Sbjct: 124 QGLALCTLGCMGSSEMCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM- 177
Query: 246 TIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLR-LANLVVLAGGLDGLLRLIDCN 304
+ L + V + LL +MC+ + LA+ L L +L+ + +
Sbjct: 178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMS 234
Query: 305 G-----GYNSLPA-------IMALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352
G + + + L + + +E + ++ L + + E +
Sbjct: 235 GYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDI-----LAQVAT--NTETSK 287
Query: 353 VAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSD---NLKSKCKNALNILIPK 409
L + V + + E+ L L I + + N++ +L +
Sbjct: 288 NVGNAILYET----VLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343
Query: 410 CENPKELEQ 418
+ +++
Sbjct: 344 --DHNAVQR 350
Score = 35.3 bits (81), Expect = 0.052
Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
Query: 145 AALALGGLAK-DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAE 203
LAL L + + + ++L + L+ AA +++ PEL E
Sbjct: 124 QGLALCTLGCMGSSEMCRDLA-----GEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME 178
Query: 204 SASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLA 255
+P LN V + + L ++ + SP + + L
Sbjct: 179 MF-----LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLV 225
Score = 32.2 bits (73), Expect = 0.47
Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 14/135 (10%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
+ + I L +Q AL TLG + + R+L V K L N + +
Sbjct: 108 MTNCIKNDLNHSTQFVQGLALCTLGC--------MGSSEMCRDLAGEVEKLLKTSNSYLR 159
Query: 102 KTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
K A V ++ + L + + L++ + + + L + + +
Sbjct: 160 KKAALCAVHVIRKVPELMEMF----LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215
Query: 162 RIVQCGALPPLVQIL 176
+ +P LV+IL
Sbjct: 216 HFRKL--VPQLVRIL 228
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 39.1 bits (90), Expect = 0.004
Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 30/323 (9%)
Query: 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSII----SSLHDFDPD 140
LV ++ + LTKQ+++ + A ED + ++ + + D
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 141 TRANAALALGGLAK--DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHS 198
R A +A G + + + ++Q A+P L++++ P + ++ AA+ + I +
Sbjct: 382 YRDAAVMAFGCILEGPEPSQLKPLVIQ--AMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
Query: 199 PELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEH 258
PE A + + + + E V ++ + +A+ + A D
Sbjct: 440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499
Query: 259 LTYPHGLVQKNAATLLRDMCKHNLRLANLV-----VLAGGLDGLLRLIDCNGGYNSLPAI 313
+ +VQK T R N ++ ++ + + I
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK-----TTLVI 554
Query: 314 MALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQVAAAWTLGQIGKHSVDNVTAL 373
M +Q+ LQ +Q+ LQ TL + +
Sbjct: 555 MERL------QQV------LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ 602
Query: 374 CEENVLSTLLSKITQTCVSDNLK 396
+ V+++LL T S ++
Sbjct: 603 ISDVVMASLLRMFQSTAGSGGVQ 625
Score = 33.7 bits (76), Expect = 0.20
Identities = 33/258 (12%), Positives = 83/258 (32%), Gaps = 35/258 (13%)
Query: 15 RARLCFVQTMSAFADKPSTIHFLKDLN-VVDLIVPLLADKVPSIQHAALATLGKLMCAKH 73
R R V + P + + ++ L+ D ++ A T+G++
Sbjct: 381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 74 VDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKD------- 126
+V L+ +++ L + +A+ A + +D++
Sbjct: 441 EAAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL 499
Query: 127 ---LDSIISSLHDF-------DPDTRANAALALGGLAKDNKHFAERIVQC---GALPPLV 173
+ I+ L + + R++A +L + K++ VQ + L
Sbjct: 500 SSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559
Query: 174 QILASPQ-----------LSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDE 222
Q+L L+ L +++ V+ L++ +
Sbjct: 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA 619
Query: 223 VN--VKADAFLCLADIAK 238
+ V+ DA + ++ + +
Sbjct: 620 GSGGVQEDALMAVSTLVE 637
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 38.3 bits (88), Expect = 0.005
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 11/123 (8%)
Query: 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQ-- 113
+ AA L L DI VL + + + + Y+ A+ C+ +
Sbjct: 343 NPCKAAGVCLMLLATCCEDDIVPHVLP-----FIKEHIKNPDWRYRDAAVMAFGCILEGP 397
Query: 114 QDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLV 173
+ + L+ + + ++I + D R AA +G + + E + L PL+
Sbjct: 398 EPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLL 453
Query: 174 QIL 176
Q L
Sbjct: 454 QCL 456
Score = 34.0 bits (77), Expect = 0.12
Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 85 LVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSII----SSLHDFDPD 140
LV ++ + LTKQ+++ + A ED + ++ + + D
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 141 TRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE 200
R A +A G + + + + + A+P L++++ P + ++ AA+ + I + PE
Sbjct: 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441
Query: 201 LAESASDCD-VIPLLIKALN 219
A + ++ LI+ L+
Sbjct: 442 AAINDVYLAPLLQCLIEGLS 461
Score = 31.3 bits (70), Expect = 0.81
Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 31/278 (11%)
Query: 138 DPDTRANAALALGGLAKDNKHFAERIVQCGALPPLV-QILASPQLSLKHAAAFALDGIVK 196
+ + A AL + K ++ + + +V + P ++ AA L I+
Sbjct: 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246
Query: 197 HSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAV 256
+ E+ + + I+A+ +D V +++ + LA ++ A
Sbjct: 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306
Query: 257 EHLTYPH-------GLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNGGYNS 309
T LV TL + + N AG L L+ +
Sbjct: 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVC---LMLLATCCEDDI 363
Query: 310 LPAIM-----------------ALGYMSAQSEQIAEQIIELQGVGSLQTILQCPHKEQLQ 352
+P ++ A+ E ++ + ++ T+++ +
Sbjct: 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423
Query: 353 V--AAAWTLGQIGKHSVDNVT-ALCEENVLSTLLSKIT 387
V AAWT+G+I + + + +L L+ ++
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
Score = 29.4 bits (65), Expect = 3.4
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 21 VQTMSAFADKPSTIHFLKDLN-VVDLIVPLLADKVPSIQHAALATLGKLM-CAKHVDIRQ 78
V + P + + ++ L+ D ++ A T+G++ I
Sbjct: 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446
Query: 79 EVLERNLVALV 89
L L L+
Sbjct: 447 VYLAPLLQCLI 457
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 37.0 bits (85), Expect = 0.011
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 10/151 (6%)
Query: 21 VQTMSAFADKPSTIHFLKDL--NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQ 78
Q++ DK T F KD V ++ +K PS+ A L +
Sbjct: 82 AQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS 141
Query: 79 EVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISS----L 134
E +++ +L+ + + + + ++++ ++ D ++ +
Sbjct: 142 GRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 135 HDFDPDTRANAALALGGLAKDNKHFAERIVQ 165
+D P R + L K F
Sbjct: 201 NDTQPAIRTIGFESFAILI---KIFGMNTFV 228
Score = 30.4 bits (68), Expect = 1.2
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 18 LCFVQTMSAFADKPSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIR 77
F +M D ST+ VV +++ ++ D P+I+ + L+ K +
Sbjct: 168 QLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI--KIFGMN 225
Score = 28.9 bits (64), Expect = 4.5
Identities = 22/161 (13%), Positives = 56/161 (34%), Gaps = 9/161 (5%)
Query: 46 IVPLLADKVPSIQHAALATLG-KLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKT- 103
++ + + + L + + ++ ++ V+LV L + K K +
Sbjct: 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSV 120
Query: 104 ---ALHMLTCVAQQDERCAGLIEDKD-LDSIISSLHDFDPDTRANAALALG---GLAKDN 156
L + + + A ++D L I+ + P R KD
Sbjct: 121 IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180
Query: 157 KHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKH 197
+R ++ +P ++QI+ Q +++ + ++K
Sbjct: 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 36.5 bits (83), Expect = 0.013
Identities = 38/214 (17%), Positives = 62/214 (28%), Gaps = 28/214 (13%)
Query: 54 VPSIQHAALATLGKLMCAKHVDIRQEVLE----------RNLVALVLKDLTKQNKHYKKT 103
VP H A T G+ M + LE + L D + Y K
Sbjct: 15 VPRGSHMASMTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIKK 74
Query: 104 ALHMLTCVAQQDERCAGLI-------EDKDLDSIISSLHDFDP-DTRANAALALGGLAKD 155
+ R + + + L + + + + A A
Sbjct: 75 LAFLAYQSDVYQVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAFD----- 129
Query: 156 NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLI 215
F ++I ALP + + L S L + AA L P E+ ++ I +
Sbjct: 130 --EFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENPNE--AIRRIA 184
Query: 216 KALNNDEVNVKADAFLCLADIAKDSPSLASTIAD 249
+ V+ L DI+K P L
Sbjct: 185 DLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 44/198 (22%)
Query: 127 LDSIISSLHDFDPDTRANAALAL-GGLAKDNKHFAERI------------------VQCG 167
+ +++ + D D R A L L KD+ + VQ
Sbjct: 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 67
Query: 168 A---LPPLVQILASPQLS----------------LKHAAAFALDGIVKHSPELAESAS-D 207
A L PLV + Q+ L+ ++ L ++ P + ++
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127
Query: 208 CDVIPLLIKAL-----NNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHLTYP 262
+V + L ++V+V+ +A +AD+ L T + LT P
Sbjct: 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 263 HGLVQKNAATLLRDMCKH 280
V+K L +
Sbjct: 188 RLAVRKRTIIALGHLVMS 205
Score = 35.5 bits (80), Expect = 0.051
Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 15/230 (6%)
Query: 55 PSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK-KTALHMLTCVAQ 113
P +Q AL+ + A V + +L+ ++ + Q+ K + + +
Sbjct: 745 PLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVA 804
Query: 114 QDERCAGLIEDKDLDSIISSLHDFDPDT--RANAALALGGLAKDNKHFAERIVQCGALPP 171
R + I + + R A L+LG + + ++ L
Sbjct: 805 ALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL-- 862
Query: 172 LVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFL 231
+ +SP +K AA++AL I + + +P +++ + +
Sbjct: 863 --EAFSSPSEEVKSAASYALGSISVGNLP--------EYLPFVLQEITSQPKRQYLLLHS 912
Query: 232 CLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHN 281
I+ S + L ++H + A L + +
Sbjct: 913 LKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID 962
Score = 34.7 bits (78), Expect = 0.084
Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 32/220 (14%)
Query: 41 NVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHY 100
N+ L++ ++ LGKL + + L + +
Sbjct: 931 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY---------LISGSSYA 981
Query: 101 KKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFA 160
+ + + + + + + + +L D D + R A + A +
Sbjct: 982 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLI 1041
Query: 161 ERIVQCGALPPLVQILASPQ------------------LSLKHAAAFALDGIVKHSPELA 202
++ LP L + L ++ AA + ++
Sbjct: 1042 RDLLD-TVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCL--- 1097
Query: 203 ESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPS 242
+ + + + L D ++K FL L ++ PS
Sbjct: 1098 DRLDIFEFLNHVEDGL-KDHYDIKMLTFLMLVRLSTLCPS 1136
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 36.3 bits (83), Expect = 0.025
Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 57/318 (17%)
Query: 35 HFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLT 94
+ L+ V+ +P I+ +L LG + D + L+ +V
Sbjct: 389 NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTT-DYLKNIIVENSGTSGD 447
Query: 95 KQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALG--GL 152
+ A + G + +++ L++ + AAL +G L
Sbjct: 448 EDVDVLLHGASLGIGLA------AMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCML 501
Query: 153 AKDNKHFAERIVQC--------------------------GALPPLVQILASPQLSLKHA 186
+ A + ++LAS + L++
Sbjct: 502 GTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYG 561
Query: 187 AAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLAST 246
AF + + A + ++ V LL A+++ +V+ A + L + +
Sbjct: 562 GAFTI------ALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPR 615
Query: 247 IADGATTLAVEHL-TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGGLDGLLRLIDCNG 305
I V+ L + V+ A L C L +D L L
Sbjct: 616 I--------VQLLSKSHNAHVRCGTAFALGIACAGKG-------LQSAIDVLDPLTKDPV 660
Query: 306 GYNSLPAIMALGYMSAQS 323
+ A++AL + Q
Sbjct: 661 DFVRQAAMIALSMILIQQ 678
Score = 34.4 bits (78), Expect = 0.100
Identities = 45/310 (14%), Positives = 96/310 (30%), Gaps = 65/310 (20%)
Query: 38 KDLNVVDLIVPLLADKVPSIQHAALATLGKLMCA-KHVDIRQEVLERNLVALVLKDLTKQ 96
++ V + + +L + + AA +G M + ++ ++ T+
Sbjct: 469 ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY------SQE-TQH 521
Query: 97 NKHYKKTALHMLTCVAQQDERCAGLIE--DKDLDSIISS--------------------- 133
+ A+ + + E LI +S++
Sbjct: 522 GNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKR 581
Query: 134 -----LHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAA 188
+ D + D R A +ALG + + RIVQ + S ++ A
Sbjct: 582 LLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ--------LLSKSHNAHVRCGTA 633
Query: 189 FALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADI-AKDSPSLASTI 247
FAL I +L + V+ A + L+ I + + L +
Sbjct: 634 FAL-------GIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV 686
Query: 248 ADGATTLAVEHLTYPHGLVQKNAATLLRD-MCKHNLRLANLVVLAGGLDGLLRLIDCNGG 306
AD ++ + K +A ++ AGG + ++L + + G
Sbjct: 687 ADINKNFL------------SVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLENADTG 734
Query: 307 YNSLPAIMAL 316
+++ L
Sbjct: 735 TLDTKSVVGL 744
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 35.7 bits (82), Expect = 0.040
Identities = 62/411 (15%), Positives = 135/411 (32%), Gaps = 44/411 (10%)
Query: 37 LKDLNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERN---LVALVLKDL 93
+ + +V LL D+ + AA + + L K+ + + + L +V
Sbjct: 183 VPMGDWTSRVVHLLNDQHLGVVTAATSLITTL-AQKNPEEFKTSVSLAVSRLSRIVTSAS 241
Query: 94 TKQNKH--YKKTA-------LHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRAN 144
T + Y A L +L C ++ + L++I++ + +
Sbjct: 242 TDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301
Query: 145 AALALGGLAKD-----NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSP 199
+ A + + H +E + A L Q L + +L++ A ++ +
Sbjct: 302 HSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEF 361
Query: 200 ELAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAVEHL 259
+ + + +K +V+V+ A L + S A + E L
Sbjct: 362 SHEAVKTHIETVINALK--TERDVSVRQRAVDLLYAMCDRS---------NAQQIVAEML 410
Query: 260 TYPHGLVQKNAATLLRDMCKHNLRLANLVVLAGG--LDGLLRLIDCNGGYNSLPAIMALG 317
+Y ++ ++ ++ LA + +D +L LI G Y S +
Sbjct: 411 SY----LETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVI 466
Query: 318 YMSAQSEQIAEQIIELQGVGSLQTILQCPH-KEQLQVAAAWTLGQIGKHSVDNVTALCEE 376
+ + + + ++ LQ P E L + LG+ G + +
Sbjct: 467 QIVINRDDVQGYAAK-----TVFEALQAPACHENLVKVGGYILGEFG-NLIAGDPRSSPL 520
Query: 377 NVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEE 427
+ L SK S ++ + + K Q +L + S+
Sbjct: 521 IQFNLLHSKFHL--CSVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDSQL 569
Score = 34.9 bits (80), Expect = 0.076
Identities = 48/359 (13%), Positives = 113/359 (31%), Gaps = 45/359 (12%)
Query: 168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKA 227
V +L+S + + K + +V + EL + L +
Sbjct: 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDLASRNPTFMG 129
Query: 228 DAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLLRDMCKHNLRLANL 287
A C+A++ S +A A + V T V+++AA L + + + +L
Sbjct: 130 LALHCIANVG--SREMAEAFAGEIPKILVAGDTMDS--VKQSAALCLLRLYRTS---PDL 182
Query: 288 VVLAGGLDGLLRLIDCNGGYNSLPAIMALGYMSAQSEQIAEQIIELQGVGSLQTILQ--- 344
V + ++ L++ A + ++ ++ + + + L V L I+
Sbjct: 183 VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLA-VSRLSRIVTSAS 241
Query: 345 --CPHKEQLQVAAAW-------TLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNL 395
V A W L V E L T+L+K + S +
Sbjct: 242 TDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE-CLETILNKAQEPPKSKKV 300
Query: 396 KSKCKN------ALNILIPKCENPKELEQML------LGNVSEELLASILCAFAKILPCD 443
+ A++++I P L + L + L L + + +
Sbjct: 301 QHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE 360
Query: 444 PVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEVIHFVSPHYLEDLINRLDQF 502
V +H + ++ +++ + ++ + + ++ + +
Sbjct: 361 FS--HEAVKTHIETVINALKTERDVSVRQRAVDLLY-----AMCDRSNAQQIVAEMLSY 412
Score = 32.6 bits (74), Expect = 0.36
Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 17/158 (10%)
Query: 65 LGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIED 124
+G L + V+ E++ R + + DL +N + ALH + V + E
Sbjct: 93 IGYLFISVLVNSNSELI-RLINNAIKNDLASRNPTFMGLALHCIANV-----GSREMAEA 146
Query: 125 --KDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQLS 182
++ I+ + D + +AAL L + + + + +V +L L
Sbjct: 147 FAGEIPKILVA-GDTMDSVKQSAALC---LLRLYRTSPDLVPMGDWTSRVVHLLNDQHLG 202
Query: 183 LKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNN 220
+ AA + + + +PE + + L + L+
Sbjct: 203 VVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSR 235
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.041
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 123 EDKDLDSIISSLHDFDPDTRANA-ALAL 149
E + L + +SL + D+ A ALA+
Sbjct: 18 EKQALKKLQASLKLYADDS---APALAI 42
Score = 32.2 bits (72), Expect = 0.19
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 456 LRKVQ-EIEP-TPEIAPHLKTINA 477
L+K+Q ++ + AP L I A
Sbjct: 22 LKKLQASLKLYADDSAPAL-AIKA 44
Score = 28.0 bits (61), Expect = 5.1
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 174 QILASPQLSLKHAAAFALDGIVKHSPELAESAS 206
Q L Q SLK +A D +P LA A+
Sbjct: 20 QALKKLQASLK---LYADDS----APALAIKAT 45
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 32.6 bits (74), Expect = 0.33
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 4/137 (2%)
Query: 348 KEQLQVAAAWTLGQIGKHSVDNVTALCEENVLSTLLSKITQTCVSDNLKSKCKNALNILI 407
L A ++ + + L + A +L
Sbjct: 358 DAALAAAQTNAAAASAQNITARIGEPLVLKCKGAPKKPPQ--RLEWKLNTGRTEAWKVLS 415
Query: 408 PKCENPKELEQMLLGNVSEELLASILCAFAKILPCDPVARR-SFVTSHCLRKVQEIEPTP 466
P+ P + +L N S L ++ I C + R S+ +V +I P
Sbjct: 416 PQGGGPWDSVARVLPNGSL-FLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKP 474
Query: 467 EIAPHLKTINACFPNEV 483
EI + A PN+V
Sbjct: 475 EIVDSASELTAGVPNKV 491
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 32.4 bits (73), Expect = 0.37
Identities = 30/214 (14%), Positives = 76/214 (35%), Gaps = 31/214 (14%)
Query: 90 LKDLTKQNKHYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALAL 149
KD+T + Y+ A+ L + +++ + + ++ D P ++A ++
Sbjct: 110 TKDMTGKEDSYRGPAVRALCQITDST-----MLQAIE-RYMKQAIVDKVPSVSSSALVSS 163
Query: 150 GGLAKDNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPE--------- 200
L K + +R + + +S + +++ A L + K+
Sbjct: 164 LHLLKCSFDVVKRW-----VNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKF 218
Query: 201 ----LAESASDCDVIPLLIKALNNDEVNVKADAFLCLADIAKDSPSLASTIADGATTLAV 256
L + C +I + + L +++ + + F + ++ + A+
Sbjct: 219 TRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK----HEMVVYEAASAI 274
Query: 257 EHLTYPHGLVQKNAATLLRDMC---KHNLRLANL 287
+L A ++L+ C K LR A +
Sbjct: 275 VNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAV 308
Score = 28.9 bits (64), Expect = 4.7
Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 20/205 (9%)
Query: 42 VVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKHYK 101
+ + + DKVPS+ +A L+ + H+ + + V + + N +
Sbjct: 140 IERYMKQAIVDKVPSVSSSA------LVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQ 193
Query: 102 KTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALGGLAKDNKHFAE 161
AL +L V + D + S + P A + +A +
Sbjct: 194 YHALGLLYHVRKNDRLAV-----SKMISKFTRHGLKSP----FAYCMMIRVASRQLEDED 244
Query: 162 RIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNND 221
+ L + + + AA A+ + S + A + +L ++
Sbjct: 245 GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPA-----VSVLQLFCSSP 299
Query: 222 EVNVKADAFLCLADIAKDSPSLAST 246
+ ++ A L +A PS +
Sbjct: 300 KAALRYAAVRTLNKVAMKHPSAVTA 324
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 31.9 bits (72), Expect = 0.60
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
Query: 127 LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAERIVQCGALPPLVQILASPQL-SLKH 185
+ +I ++ + D + ++ A+ L + A + + LP L + K
Sbjct: 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKAL----LPHLTNAIVETNKWQEKI 152
Query: 186 AAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKADAFLCL---------ADI 236
A A +V + + + ++IP+L + + + + VKA A + DI
Sbjct: 153 AILAAFSAMVDAAKDQV-ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211
Query: 237 AKDSPSLASTIADGATT 253
+ PSL IAD
Sbjct: 212 ERFIPSLIQCIADPTEV 228
Score = 31.9 bits (72), Expect = 0.65
Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 48/205 (23%)
Query: 40 LNVVDLIVPLLADKVPSIQHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNKH 99
+ +V I +K IQ A TL ++ + + +L LT
Sbjct: 94 VQLVPAICTNAGNKDKEIQSVASETLISIV---------NAVNPVAIKALLPHLTNAIVE 144
Query: 100 Y-----KKTALHML----TCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALALG 150
K L Q + + + ++ D + +A A A+
Sbjct: 145 TNKWQEKIAILAAFSAMVDAAKDQVALRMPEL----IPVLSETMWDTKKEVKAAATAAMT 200
Query: 151 GLAK--DNKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVK-------HSPEL 201
+ DNK I P L+Q +A P + + + L
Sbjct: 201 KATETVDNKDIERFI------PSLIQCIADPTEVPE-----TVHLLGATTFVAEVTPATL 249
Query: 202 AESASDCDVIPLLIKALNNDEVNVK 226
+ ++PLL + LN E +K
Sbjct: 250 SI------MVPLLSRGLNERETGIK 268
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 30.6 bits (70), Expect = 1.2
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 417 EQMLLGNVSEELLASILCAFAKILPCDP 444
+ +GN ++E++ ++ F + + P
Sbjct: 77 NNVSVGNGADEIIYVMMLMFDRSVFFPP 104
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 424 VSEELLASILCAFAKILPCDPVARRSFVTSHCLRKVQEIEPTPEIAPHLKTINACFPNEV 483
V E LA + + S + ++ + + + + H+ IN+CF
Sbjct: 187 VDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCF---- 242
Query: 484 IHFVSPHYLEDLINRLDQ 501
S + +E++I L Q
Sbjct: 243 ----SANTVEEIIENLQQ 256
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 30.5 bits (68), Expect = 1.4
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 31 PSTIHFLKDLNVVDLIVPLLADKVPSIQHAALATLGKLM 69
P +I L I+ LL +++ AL ++
Sbjct: 437 PESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 29.8 bits (67), Expect = 1.7
Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 35/143 (24%)
Query: 43 VDLIVPLLADKVPSIQHAA-----LATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQN 97
+ + L+ D+ ++ L L ++ + +R V++R + + + ++
Sbjct: 100 REQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDED 159
Query: 98 KHYKKTALHMLT-----------------CVAQQ--DERCAGLIEDKDLD---------- 128
+ +K L VA + + L+ D D
Sbjct: 160 RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 219
Query: 129 -SIISSLHDFDPDTRANAALALG 150
+ L + DP+ R A LG
Sbjct: 220 LEALRELDEPDPEVRLAIAGRLG 242
Score = 27.9 bits (62), Expect = 7.2
Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 43/212 (20%)
Query: 44 DLIVPLLADKVPSI-----QHAALATLGKLMCAKHVDIRQEVLERNLVALVLKDLTKQNK 98
L V LAD +++ + L L+ +R+ V L L L
Sbjct: 53 HLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVA-YRLPREQLSALMFDED 111
Query: 99 HYKKTALHMLTCVAQQDERCAGLIEDKDLDSIISSLHDFDPDTRANAALA-----LGGLA 153
+ + A + + L D D RA L
Sbjct: 112 REVRITV-------------ADRLPLEQL---EQMAADRDYLVRAYVVQRIPPGRLFRFM 155
Query: 154 KD-NKHFAERIVQCGALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCD--- 209
+D ++ + + + L + P+ ++ A L +L E D D
Sbjct: 156 RDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR-----GDDLLELLHDPDWTV 210
Query: 210 -------VIPLLIKALNNDEVNVKADAFLCLA 234
++ L+ + V+ L
Sbjct: 211 RLAAVEHASLEALRELDEPDPEVRLAIAGRLG 242
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 29.5 bits (65), Expect = 3.7
Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 17/153 (11%)
Query: 56 SIQHAALATLGKLMCAKHVDIRQEVLERNLVALV-LKDLTKQNKHYKKTALHMLTCVAQQ 114
+ + A L +L V + L + +N +K +++ T +A
Sbjct: 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAIN 435
Query: 115 DERCAGLIEDKD------------LDSIISSLHDFDPDTRANAALALGGLAKDNKHFAER 162
+ + + ++S + R +A + N+ +
Sbjct: 436 GNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR--NQLTKAQ 493
Query: 163 IVQCGALPPLVQILASPQLSLKHAAAFALDGIV 195
+++ +P L L + + + AA ++ I+
Sbjct: 494 LIE--LMPILATFLQTDEYVVYTYAAITIEKIL 524
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 28.9 bits (65), Expect = 4.5
Identities = 9/82 (10%), Positives = 24/82 (29%), Gaps = 13/82 (15%)
Query: 424 VSEELLASILCAFAKILPCDPVARRSFVTSHCLRK----VQEIEPTPEIAPHLKTINACF 479
++ + + A A + D A + + V + +A + I+
Sbjct: 227 LNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDRLM 286
Query: 480 PNEVIHFVSPHYLEDLINRLDQ 501
+ D++ R+
Sbjct: 287 AGSL---------TDIVTRMST 299
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 28.7 bits (65), Expect = 5.0
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 417 EQMLLGNVSEELLASILCAFAKILPCDPV--ARRSFV 451
+ + N S E+L +L AF P + S+
Sbjct: 93 DNLWAANGSNEILQQLLQAFGG--PGRTALGFQPSYS 127
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 28.4 bits (64), Expect = 6.0
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 479 FPNEVIHFVSPHYLEDLINRLDQFNPQK 506
+E H VSP L D +++L +++ Q
Sbjct: 284 VHSENQHLVSPEAL-DFLDKLLRYDHQS 310
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly,
membrane coat, nucleocytoplasmic transport,
beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB:
3h7n_A 3hxr_A
Length = 729
Score = 28.6 bits (63), Expect = 6.0
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 381 TLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELEQMLLGNVSEELLASILCAFAKIL 440
LS+I + K + N +++ + N L++ ++S + ++ L
Sbjct: 2 ACLSRIDANLLQYYEKPEPNNTVDLYVSNNSNNNGLKE-GDKSISTPVPQPYGSEYSNCL 60
Query: 441 PCDPVARRSFVTSHCLRKVQEIEPTPEIAPH-LKTINACFPNEVI 484
++ ++ H + + P + KTIN PN +
Sbjct: 61 ---LLSNSEYICYHFSSRSTLLTFYPLSDAYHGKTINIHLPNASM 102
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 28.2 bits (63), Expect = 8.1
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 374 CEENVLSTLLSKITQTCVSDNLKSKCKNALNILIPKCENPKELE--QMLLGNVSEELLAS 431
E +L +++ K+ ++ I+ PK P+E+ L + E +
Sbjct: 357 IPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPKMHGPQEVAFANKLFTRI--ETMLG 414
Query: 432 ILCAFAKILPCDPVARRSFVTSHCLRKVQEI 462
+ K+ D R S C+ + +
Sbjct: 415 MAPNTLKMGIMDEERRTSLNLRSCIAQARNR 445
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 27.9 bits (61), Expect = 9.2
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 168 ALPPLVQILASPQLSLKHAAAFALDGIVKHSPELAESASDCDVIPLLIKALNNDEVNVKA 227
AL ++++ + + A AL I+K + + + I AL+ + V
Sbjct: 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTI 93
Query: 228 DAFLCLADIAKDSPSLASTIADGATTLAVEHLTYPHGLVQKNAATLL 274
A L + KD P + S A V L P +++ +L
Sbjct: 94 KALRALGYLVKDVP-MGSKTFLKAAKTLVSLLESPDDMMRIETIDVL 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.382
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,870,029
Number of extensions: 479764
Number of successful extensions: 1509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 176
Length of query: 542
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 444
Effective length of database: 3,965,535
Effective search space: 1760697540
Effective search space used: 1760697540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.5 bits)