BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12595
         (733 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
           Subunit Sec6p
 pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
           Subunit Sec6p
          Length = 399

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 23/194 (11%)

Query: 410 SPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTE--------- 460
           +PP SD +G          FQM  Q +++    +Q    +IL+  VE  ++         
Sbjct: 44  TPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQ---AKILVGVVERFSDLLTKRQKNW 100

Query: 461 YGKMSKDALKELKVEHFKDRSKMVY---------FTHFMIAMLNNCLKFVELAHQMKQTF 511
             K+S++  K++   H  D                  ++IA+ N+ +K  + A  +   +
Sbjct: 101 ISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKY 160

Query: 512 WK-RSELHRSDASNKFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTSTVS 570
            K  S+++    +N  E  L  F E+   S+  L+   F DL   +Q++ +  W   + +
Sbjct: 161 GKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQA 220

Query: 571 IQTICMTLDDYFQD 584
            Q I  TLD+Y  D
Sbjct: 221 -QQIADTLDEYLLD 233


>pdb|2FE1|A Chain A, Crystal Structure Of Pae0151 From Pyrobaculum Aerophilum
          Length = 156

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 504 AHQMKQTFWK---RSELHRSDASNKFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLM 560
           A+++    WK   R  L   +ASN  E L + F+ L+  S   +L++AF   L H   + 
Sbjct: 65  AYEVANDLWKHARRGLLREDEASNMLEELWEFFKALKVHSYAEVLKDAFALALKHGVTVY 124

Query: 561 TAKWLTSTVSIQTICMTLD 579
            A ++     I    +TLD
Sbjct: 125 DAAYVALAEKIGGKLLTLD 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,008,566
Number of Sequences: 62578
Number of extensions: 796546
Number of successful extensions: 2764
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2758
Number of HSP's gapped (non-prelim): 28
length of query: 733
length of database: 14,973,337
effective HSP length: 106
effective length of query: 627
effective length of database: 8,340,069
effective search space: 5229223263
effective search space used: 5229223263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)