Query psy12595
Match_columns 733
No_of_seqs 147 out of 412
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:19:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2286|consensus 100.0 4.1E-97 9E-102 817.7 64.9 656 13-732 2-664 (667)
2 PF06046 Sec6: Exocyst complex 100.0 7.5E-98 2E-102 858.7 23.6 541 180-732 1-566 (566)
3 COG5173 SEC6 Exocyst complex s 100.0 1.3E-81 2.9E-86 653.1 56.7 692 14-732 3-735 (742)
4 KOG2180|consensus 100.0 1.5E-47 3.2E-52 411.8 55.7 646 14-716 20-736 (793)
5 PF04100 Vps53_N: Vps53-like, 100.0 1.7E-28 3.7E-33 264.3 29.7 348 14-402 5-381 (383)
6 KOG0412|consensus 99.3 1.7E-06 3.6E-11 95.9 51.9 649 18-702 22-772 (773)
7 PF10191 COG7: Golgi complex c 99.3 8.2E-06 1.8E-10 96.7 60.8 619 14-699 11-766 (766)
8 PF07393 Sec10: Exocyst comple 98.7 0.0011 2.4E-08 78.8 46.0 555 100-704 27-705 (710)
9 PF04437 RINT1_TIP1: RINT-1 / 98.3 0.00011 2.5E-09 83.4 25.0 393 252-667 3-448 (494)
10 KOG2176|consensus 98.1 0.047 1E-06 62.6 51.1 619 31-696 45-759 (800)
11 PF05664 DUF810: Protein of un 97.9 0.0035 7.7E-08 72.5 25.4 265 181-469 323-602 (677)
12 KOG2218|consensus 97.2 0.68 1.5E-05 53.1 51.4 140 525-669 547-698 (737)
13 PF10475 DUF2450: Protein of u 97.2 0.056 1.2E-06 57.0 21.0 175 15-201 15-191 (291)
14 PF10474 DUF2451: Protein of u 96.8 0.2 4.4E-06 50.8 20.4 173 528-714 46-233 (234)
15 PF04091 Sec15: Exocyst comple 96.8 0.14 3.1E-06 54.3 20.1 163 528-696 133-308 (311)
16 KOG2286|consensus 96.7 0.085 1.8E-06 60.7 18.3 121 591-712 232-352 (667)
17 PF06248 Zw10: Centromere/kine 96.4 2.8 6.2E-05 49.0 49.7 170 27-203 7-179 (593)
18 PF04048 Sec8_exocyst: Sec8 ex 96.4 0.075 1.6E-06 49.6 13.2 101 31-131 37-141 (142)
19 PF06419 COG6: Conserved oligo 94.1 15 0.00033 43.1 48.7 111 309-438 303-414 (618)
20 KOG4182|consensus 93.2 15 0.00033 40.1 35.0 141 14-154 12-163 (828)
21 PF10392 COG5: Golgi transport 92.8 2.6 5.6E-05 38.7 12.7 108 15-122 10-122 (132)
22 KOG3691|consensus 92.2 15 0.00032 43.4 20.0 123 27-149 43-166 (982)
23 PF15469 Sec5: Exocyst complex 90.4 12 0.00027 36.3 15.4 138 48-202 2-152 (182)
24 KOG1011|consensus 88.0 54 0.0012 37.3 30.2 129 301-443 667-804 (1283)
25 PF08700 Vps51: Vps51/Vps67; 86.4 10 0.00022 31.8 10.3 72 15-87 8-79 (87)
26 PF04124 Dor1: Dor1-like famil 79.0 99 0.0021 33.3 30.2 55 28-82 8-62 (338)
27 KOG2148|consensus 78.0 1E+02 0.0022 35.5 16.4 60 33-93 192-252 (867)
28 PF01843 DIL: DIL domain; Int 77.3 15 0.00032 32.1 8.3 94 597-697 3-98 (105)
29 smart00762 Cog4 COG4 transport 77.2 23 0.0005 38.0 11.2 79 374-459 233-312 (324)
30 PF14923 CCDC142: Coiled-coil 76.8 57 0.0012 36.3 14.1 72 569-645 276-348 (450)
31 PRK04778 septation ring format 76.3 1E+02 0.0022 35.9 17.1 137 16-153 50-205 (569)
32 PF07889 DUF1664: Protein of u 73.0 36 0.00079 30.8 9.6 70 13-96 42-112 (126)
33 PLN02939 transferase, transfer 72.5 1.3E+02 0.0027 37.1 16.6 44 10-57 149-193 (977)
34 PF02845 CUE: CUE domain; Int 72.5 7.4 0.00016 27.8 4.1 28 675-702 4-32 (42)
35 KOG3745|consensus 72.1 2.1E+02 0.0046 33.8 46.1 124 569-702 625-750 (763)
36 PF15290 Syntaphilin: Golgi-lo 71.8 96 0.0021 31.9 13.0 30 67-96 118-147 (305)
37 PF10602 RPN7: 26S proteasome 68.8 1.2E+02 0.0025 29.4 13.1 92 31-122 4-99 (177)
38 KOG0517|consensus 67.4 3E+02 0.0066 36.0 18.3 78 14-96 858-939 (2473)
39 smart00546 CUE Domain that may 66.5 7.2 0.00016 27.9 3.1 29 674-702 4-33 (43)
40 KOG1328|consensus 66.1 2.7E+02 0.0059 32.7 36.0 254 412-681 643-924 (1103)
41 PF08318 COG4: COG4 transport 64.2 2.1E+02 0.0045 30.7 21.0 82 375-459 235-318 (331)
42 PF07426 Dynactin_p22: Dynacti 64.2 1.4E+02 0.0031 28.8 13.2 82 54-140 35-117 (174)
43 KOG3958|consensus 63.6 1.9E+02 0.0041 30.0 14.5 52 71-122 275-326 (371)
44 PF04912 Dynamitin: Dynamitin 61.5 1.7E+02 0.0037 32.2 14.2 49 71-119 293-341 (388)
45 PF11264 ThylakoidFormat: Thyl 61.4 93 0.002 31.1 10.7 128 573-714 1-128 (216)
46 KOG2115|consensus 60.3 3.8E+02 0.0082 32.4 33.4 118 26-149 235-359 (951)
47 PF06148 COG2: COG (conserved 59.9 10 0.00023 34.7 3.6 106 31-136 27-133 (133)
48 PF03908 Sec20: Sec20; InterP 57.3 73 0.0016 27.1 8.2 53 49-101 12-64 (92)
49 KOG2069|consensus 56.2 3.6E+02 0.0078 30.9 27.7 176 29-227 33-212 (581)
50 PF05478 Prominin: Prominin; 55.6 4.6E+02 0.01 32.0 20.3 62 33-96 205-269 (806)
51 KOG3691|consensus 55.5 4.5E+02 0.0097 31.8 16.4 132 525-665 774-918 (982)
52 PRK13266 Thf1-like protein; Re 54.5 1.7E+02 0.0036 29.5 11.1 121 571-705 4-124 (225)
53 PF08317 Spc7: Spc7 kinetochor 53.6 3.1E+02 0.0067 29.3 14.7 41 46-86 146-186 (325)
54 PF10112 Halogen_Hydrol: 5-bro 53.4 2E+02 0.0043 28.2 11.8 36 168-203 154-189 (199)
55 PLN03060 inositol phosphatase- 53.2 1.8E+02 0.004 28.8 11.0 127 572-713 3-129 (206)
56 COG1579 Zn-ribbon protein, pos 53.0 2.7E+02 0.0058 28.4 18.1 43 29-72 12-54 (239)
57 KOG0031|consensus 50.3 89 0.0019 29.3 7.8 76 637-712 52-145 (171)
58 KOG0977|consensus 50.1 4.5E+02 0.0098 30.2 16.7 72 125-201 181-254 (546)
59 PF07889 DUF1664: Protein of u 47.7 2E+02 0.0044 26.1 9.7 45 78-124 66-110 (126)
60 PF08317 Spc7: Spc7 kinetochor 46.9 1.9E+02 0.004 31.0 11.2 18 169-186 274-291 (325)
61 PF02828 L27: L27 domain; Int 46.4 51 0.0011 25.1 4.9 39 112-150 5-47 (56)
62 PF02609 Exonuc_VII_S: Exonucl 44.8 1.2E+02 0.0026 22.8 6.7 50 28-85 4-53 (53)
63 cd07686 F-BAR_Fer The F-BAR (F 44.7 3.5E+02 0.0077 27.4 14.8 12 125-136 200-211 (234)
64 PF14782 BBS2_C: Ciliary BBSom 44.2 1.7E+02 0.0038 32.6 10.5 89 26-124 303-393 (431)
65 COG5173 SEC6 Exocyst complex s 42.8 2.3E+02 0.005 32.2 10.9 107 6-124 7-115 (742)
66 PF12252 SidE: Dot/Icm substra 42.7 7.6E+02 0.016 30.7 17.6 50 145-203 1210-1259(1439)
67 PF06160 EzrA: Septation ring 42.3 6.1E+02 0.013 29.5 19.3 182 9-196 107-300 (560)
68 PF03915 AIP3: Actin interacti 42.2 2.1E+02 0.0045 31.8 10.7 73 21-93 217-292 (424)
69 PF10157 DUF2365: Uncharacteri 41.7 3E+02 0.0066 25.8 12.3 39 82-120 108-146 (149)
70 PF07373 CAMP_factor: CAMP fac 41.1 3.9E+02 0.0084 26.9 12.2 13 164-176 146-158 (228)
71 TIGR03060 PS_II_psb29 photosys 38.9 3.3E+02 0.0072 27.2 10.4 117 571-701 4-120 (214)
72 PF07361 Cytochrom_B562: Cytoc 38.0 2.5E+02 0.0054 24.5 8.5 85 61-156 10-96 (103)
73 PF15450 DUF4631: Domain of un 37.9 2.5E+02 0.0055 31.6 10.4 67 10-76 344-411 (531)
74 PF03474 DMA: DMRTA motif; In 37.6 36 0.00078 23.9 2.5 28 676-703 5-33 (39)
75 PF10157 DUF2365: Uncharacteri 36.5 3.7E+02 0.0079 25.3 10.2 9 4-12 54-62 (149)
76 PHA03332 membrane glycoprotein 36.3 7E+02 0.015 30.9 14.0 78 65-151 883-960 (1328)
77 PRK04778 septation ring format 36.3 7.5E+02 0.016 28.8 19.9 32 101-132 199-235 (569)
78 KOG0810|consensus 35.8 5.5E+02 0.012 27.1 14.5 88 129-216 168-261 (297)
79 COG3028 Uncharacterized protei 35.1 1.9E+02 0.0041 27.6 7.6 82 593-696 70-154 (187)
80 PF12325 TMF_TATA_bd: TATA ele 34.5 1.8E+02 0.0039 26.2 7.2 76 29-105 32-111 (120)
81 TIGR01280 xseB exodeoxyribonuc 34.3 1.6E+02 0.0035 23.5 6.1 53 27-87 5-57 (67)
82 PF10234 Cluap1: Clusterin-ass 32.7 3.6E+02 0.0079 27.9 10.0 13 44-56 161-173 (267)
83 PF08649 DASH_Dad1: DASH compl 32.3 2.4E+02 0.0052 21.9 6.5 41 55-95 15-55 (58)
84 PLN00047 photosystem II biogen 32.2 2.2E+02 0.0049 29.5 8.3 116 570-699 54-169 (283)
85 smart00787 Spc7 Spc7 kinetocho 30.6 6.6E+02 0.014 26.7 12.0 99 6-106 157-265 (312)
86 PRK14063 exodeoxyribonuclease 29.3 1.9E+02 0.0041 23.8 5.9 53 26-86 8-60 (76)
87 KOG4514|consensus 28.8 5.4E+02 0.012 24.8 11.0 41 82-122 181-221 (222)
88 COG0216 PrfA Protein chain rel 28.5 3.1E+02 0.0068 29.3 8.7 66 73-139 7-72 (363)
89 PRK00977 exodeoxyribonuclease 28.4 2.1E+02 0.0046 23.7 6.1 54 26-87 13-66 (80)
90 PF06248 Zw10: Centromere/kine 28.1 1E+03 0.022 27.8 16.1 84 419-512 450-533 (593)
91 PF05531 NPV_P10: Nucleopolyhe 27.3 1.5E+02 0.0033 24.2 4.9 26 57-82 19-44 (75)
92 PF09385 HisK_N: Histidine kin 27.2 4.7E+02 0.01 24.0 8.6 81 11-91 42-122 (133)
93 PRK14066 exodeoxyribonuclease 27.1 2.2E+02 0.0047 23.3 5.9 53 27-87 8-60 (75)
94 PF04048 Sec8_exocyst: Sec8 ex 27.0 5E+02 0.011 23.9 10.5 75 15-89 23-102 (142)
95 PF09164 VitD-bind_III: Vitami 27.0 31 0.00066 27.1 0.9 26 677-702 20-45 (68)
96 PRK14064 exodeoxyribonuclease 26.7 2.2E+02 0.0048 23.3 5.9 53 26-86 9-61 (75)
97 PRK10929 putative mechanosensi 26.2 1.4E+03 0.031 28.9 16.4 12 388-399 495-506 (1109)
98 KOG2307|consensus 26.1 1E+03 0.023 27.3 45.9 180 424-611 415-616 (705)
99 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.0 5E+02 0.011 23.6 11.1 39 3-41 32-70 (132)
100 PF09731 Mitofilin: Mitochondr 25.9 1.1E+03 0.024 27.4 18.4 31 34-64 311-341 (582)
101 COG1704 LemA Uncharacterized c 25.7 4.8E+02 0.01 25.4 8.7 24 104-127 133-157 (185)
102 PF08580 KAR9: Yeast cortical 25.3 1.2E+03 0.026 27.8 14.0 41 59-99 36-76 (683)
103 PF13864 Enkurin: Calmodulin-b 25.3 3.4E+02 0.0075 23.2 7.3 69 31-101 2-72 (98)
104 PRK14067 exodeoxyribonuclease 25.1 3.5E+02 0.0076 22.4 6.8 53 26-86 10-62 (80)
105 KOG2180|consensus 25.0 1.2E+03 0.026 27.6 14.4 108 13-124 155-280 (793)
106 PF06120 Phage_HK97_TLTM: Tail 25.0 8.4E+02 0.018 25.8 11.2 16 6-21 41-56 (301)
107 KOG1086|consensus 24.8 6.3E+02 0.014 27.9 10.3 57 18-85 177-235 (594)
108 PRK14068 exodeoxyribonuclease 24.6 3.5E+02 0.0076 22.2 6.7 53 27-87 10-62 (76)
109 KOG0964|consensus 24.6 1.4E+03 0.03 28.3 14.8 27 168-194 779-805 (1200)
110 PRK14069 exodeoxyribonuclease 24.2 2.8E+02 0.006 23.9 6.2 54 26-87 11-64 (95)
111 PF05377 FlaC_arch: Flagella a 24.1 3.3E+02 0.0072 20.8 6.9 26 53-78 18-43 (55)
112 PF12126 DUF3583: Protein of u 24.0 8.4E+02 0.018 25.5 12.0 38 112-149 77-114 (324)
113 cd07603 BAR_ACAPs The Bin/Amph 23.4 7.2E+02 0.016 24.5 18.0 51 67-123 3-53 (200)
114 PF02650 HTH_WhiA: WhiA C-term 23.3 2.7E+02 0.0059 23.4 6.0 41 672-714 41-81 (85)
115 cd07639 BAR_ACAP1 The Bin/Amph 22.5 7.6E+02 0.016 24.4 14.9 48 68-121 4-51 (200)
116 PHA03386 P10 fibrous body prot 22.4 1.9E+02 0.0042 24.5 4.7 45 45-90 16-60 (94)
117 PF05791 Bacillus_HBL: Bacillu 22.1 7.3E+02 0.016 24.0 12.7 104 3-122 52-157 (184)
118 PRK00578 prfB peptide chain re 21.9 9.4E+02 0.02 26.2 11.3 62 75-137 25-86 (367)
119 PF08654 DASH_Dad2: DASH compl 21.5 5.2E+02 0.011 22.6 7.6 51 36-86 3-58 (103)
120 PRK14070 exodeoxyribonuclease 21.3 4.4E+02 0.0095 21.2 6.9 53 30-90 2-54 (69)
121 COG5278 Predicted periplasmic 21.2 5.1E+02 0.011 25.8 8.4 77 9-86 83-163 (207)
122 PTZ00446 vacuolar sorting prot 21.1 6.1E+02 0.013 24.9 8.8 31 40-71 73-103 (191)
123 PF08121 Toxin_33: Waglerin fa 21.1 40 0.00087 19.6 0.4 9 299-307 5-13 (22)
124 KOG1656|consensus 21.0 3.6E+02 0.0077 26.5 6.9 11 129-139 140-150 (221)
125 PF00522 VPR: VPR/VPX protein; 20.9 1.4E+02 0.0031 25.6 3.8 33 287-319 20-54 (96)
126 PF12022 DUF3510: Domain of un 20.9 6.2E+02 0.014 22.8 10.9 75 535-612 3-79 (125)
127 KOG0994|consensus 20.9 1.8E+03 0.038 28.1 17.7 174 1-201 1565-1747(1758)
128 KOG0993|consensus 20.6 1.1E+03 0.025 25.7 16.9 18 121-138 403-420 (542)
129 PF03357 Snf7: Snf7; InterPro 20.4 4.5E+02 0.0097 24.6 7.9 25 31-55 12-36 (171)
No 1
>KOG2286|consensus
Probab=100.00 E-value=4.1e-97 Score=817.66 Aligned_cols=656 Identities=35% Similarity=0.595 Sum_probs=605.1
Q ss_pred HhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy12595 13 QNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVL 92 (733)
Q Consensus 13 ~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~ 92 (733)
.+|+..+++++++|++|++|++++.+..+++++++++||++++.|.++++.|+..+..+..+++.
T Consensus 2 ~aal~~v~~ll~~~~~l~~l~~~~~r~~~~~~~~ea~lkt~~~~~~~~v~~~l~~l~~~~~~~~~--------------- 66 (667)
T KOG2286|consen 2 DAALTQVADLLRRPSSLEKLPSIKARAAREKEAVEAQLKTMVQKQYEGVEKGLKNLSTSETDIKG--------------- 66 (667)
T ss_pred CchhhHHHHHHhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------------
Confidence 47899999999999999999999999999999999999999999999999999999998888871
Q ss_pred hhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcC----chHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy12595 93 PPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEG----KLLHAHQSLMDLEKSRDELMYETHKLSGQ 168 (733)
Q Consensus 93 ~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~----~LL~ah~~L~~LE~~rd~~l~e~~~~~~~ 168 (733)
..++..+++++++++..+.++..++..+ +|+.||.+|++++..|+++++|.+.++..
T Consensus 67 -------------------~~~~~~n~~~~~n~~~~~~e~~~~~~~~~~~~~l~~a~~~l~dl~~sr~~l~~e~~~~aa~ 127 (667)
T KOG2286|consen 67 -------------------YATAMSNLKHIFNLVADVQEIRMLLDAEKAKDELLLAHDHLLDLEPSRDELLYEVHVMAAE 127 (667)
T ss_pred -------------------HHHHHHHhhhhhhchhHHHHHHHHHhcccccchhhhcCHHHHHHHhhhHHHHHHHHHHhHh
Confidence 5567889999999999999998888775 79999999999999999999999988655
Q ss_pred Chhh-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHhhhhhhhhHHHHhhcCCCCCCCCchhH
Q psy12595 169 SMAD-KLLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKEPTVIVTALRIIEREEHLDQMCMQKKQQSNYMPIGRPKQW 247 (733)
Q Consensus 169 ~~~~-~~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~~~~~~lv~a~rIie~EE~~D~~~~~~~~~~~~~~~~~pk~~ 247 (733)
...| ..++..+|+.++.++++|++.+|.++.+.+++++. |+.+|+|+||||+||+.|+.+...+.+++.+|++|||+|
T Consensus 128 ~~~D~~~~~~~~f~~v~~~~~ef~K~l~~~~~~~~~~~k~-pe~~v~alrIVe~eE~~D~~~~~~~~~~s~~~~~r~~~~ 206 (667)
T KOG2286|consen 128 AAGDAQTTLRNDFSSVDSASQEFEKNLWGILSRILEMVKS-PEKLVQALRIVEREEIEDEQAMEARPGNSSVPNPRPREW 206 (667)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCchH
Confidence 5444 56777799999999999999999999999999999 999999999999999999999987777667999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccchHHHHHHHHHHHHHHHHH
Q psy12595 248 RKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNIVTSFMRMYHDCLSIHLE 327 (733)
Q Consensus 248 r~~~~~~l~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~I~~~y~~~yh~~l~~~l~ 327 (733)
+. +..+.+.+.+|.++.+...+..|+.|.+.+++..+.++++||..++..++|||||||+||..|++.||++++.+++
T Consensus 207 ~s--~~~~~r~vatR~~~~~~~~~a~n~~w~~~~~e~~r~~i~EdL~~~~~~l~~cfpp~~~if~~~l~~Yh~~ls~ll~ 284 (667)
T KOG2286|consen 207 KS--LTRMSRTVATRVEGRQGKMRALNKEWQVRLLEVLRFVIREDLRVAKRVLVPCFPPHYNIFSAYLELYHQALSDLLR 284 (667)
T ss_pred HH--HHHHhhhHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99 7778888999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-hcCCccchhhhhccccccCCCCCCCCCCccccCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12595 328 EMA-TSLEGNEIVSMLTWAVNTYPGPDMMSNPELGANAT-PLGPVLKEEVIKELENKYFKYIQENYVDWMRKTLETEKED 405 (733)
Q Consensus 328 ~l~-~~l~~~di~~LL~wv~~~Y~~~~~l~~~~l~~~~~-~l~plL~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~ 405 (733)
.+. .+++.++++.++.||.+.|..+. + ..+++.. +++|.|.++....|++.|++..+.++++|+.|+.+.|+.+
T Consensus 285 dl~s~~l~~~eil~llawV~~~~~~~~-l---~~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~ 360 (667)
T KOG2286|consen 285 DLASEALELREILQLLAWVRNEYYTPL-L---QLNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAA 360 (667)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcChh-h---hccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999974555431 1 1234443 4899999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch
Q psy12595 406 WKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVY 485 (733)
Q Consensus 406 w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~~l~~~v~~~~~~~l~~f~~~~~~~l~~~~~~~~~~~~~~~~ 485 (733)
|..+.+|+.|.+|+|+||+|+++|||+.+|+++++.++.++...+...++.++..|++.|.++...+.+.| + +++|++
T Consensus 361 ~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~~~~~~~~~~v~~f~~~~~~~~~~~~e~~-~-~~~~~~ 438 (667)
T KOG2286|consen 361 WAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAATSSDLSGKILRSLLSEVPSFARNYPKAQDEDQESH-R-REQPEG 438 (667)
T ss_pred hhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhc-h-hccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888 6 889999
Q ss_pred hhHHHHHHhcChHHHHHHHHHHHhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccC
Q psy12595 486 FTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSDASNKFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWL 565 (733)
Q Consensus 486 ~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~ 565 (733)
|.+|+||++|||..|+.+..++.+++ +.+..+.++|.+++++++..|++.+|.||+|+|+++||++|+
T Consensus 439 l~~y~iA~~N~~~~~a~~~~~~~~~~------------d~~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~ 506 (667)
T KOG2286|consen 439 LREYLIANINNNLKMAMLMVNLKSKY------------DTLKGLLDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWC 506 (667)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHhcc------------chhHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999987665 346789999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12595 566 TSTVSIQTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSK 645 (733)
Q Consensus 566 ~~~~~v~~I~~t~~dy~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~ 645 (733)
.|+ .++.||.|++||++||+++..++|..|+++++.++|++|+++|+++|.. . .+++++|+.|++.++.||.+
T Consensus 507 ~g~-~~~~Iv~T~~dy~~D~~~~~~~~f~~fi~e~~~~~v~~Yl~~l~~kr~~-----~-~~~~~~i~~d~~~~~~~f~~ 579 (667)
T KOG2286|consen 507 AGS-VTENIVATLDDYLPDFKELMGEYFVRFIEEASLELVIEYLRALSKKRAS-----I-QELIEKIKSDAETLYHFFRK 579 (667)
T ss_pred chh-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----H-HHHHHHHHhhHHHHHHHHHH
Confidence 995 8999999999999999976566699999999999999999999998887 2 38999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhccCCCCCCcC
Q psy12595 646 YTTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQKTKANRRFSYS 725 (733)
Q Consensus 646 ~~s~~~~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l~~~~~~~~~~~~ 725 (733)
|+++.+|+.+.+.+++++++..|++.|.++|++|+..|||++.+||++||++|||+++++++.|++++++......++.
T Consensus 580 ~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~i~~~~~~~~~~~~~~~- 658 (667)
T KOG2286|consen 580 YGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKKIVDILKESMGSQEPDR- 658 (667)
T ss_pred hCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcCC-
Confidence 9997779999999999999999999999999999999999999999999999999999999999999998866555555
Q ss_pred CccccCC
Q psy12595 726 KSLFHKI 732 (733)
Q Consensus 726 ~tifs~i 732 (733)
| +||.+
T Consensus 659 ~-~~~~~ 664 (667)
T KOG2286|consen 659 P-LFSDF 664 (667)
T ss_pred C-Ccccc
Confidence 5 88875
No 2
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=100.00 E-value=7.5e-98 Score=858.67 Aligned_cols=541 Identities=40% Similarity=0.734 Sum_probs=292.5
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHhhhhhhhhHHHHhhcCCC----------CCCCCchhHHH
Q psy12595 180 FSDVEKVSQLLEKQIKLILSRTLLTVRKEPTVIVTALRIIEREEHLDQMCMQKKQQSNY----------MPIGRPKQWRK 249 (733)
Q Consensus 180 f~~v~~l~~~l~~~l~~~~~~~l~~~~~~~~~lv~a~rIie~EE~~D~~~~~~~~~~~~----------~~~~~pk~~r~ 249 (733)
|++|+.+++.|+++||.++++++++++.+|++||+|+||||+||++|+++.+.++..++ .|++|||+||+
T Consensus 1 F~~v~~l~~~~~~~l~~i~~~~l~~~~~~~~~lv~~~~Iie~EE~~D~~~~~~~~~~~~~~~~f~~~~~~~~~rpr~~r~ 80 (566)
T PF06046_consen 1 FEDVDELSDEFEKQLWSIVRNSLELVRSDPELLVRAVRIIEREERADERAAARQEAQSFQAARFRSINQGPPGRPRNWRQ 80 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhHHHHHHhhhhccccccccccccCCCCCchHHHH
Confidence 88999999999999999999999999999999999999999999999999986554433 47899999999
Q ss_pred HHHHHHHHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccchHHHHHHHHHHHHHHHHHHH
Q psy12595 250 MAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNIVTSFMRMYHDCLSIHLEEM 329 (733)
Q Consensus 250 ~~~~~l~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~I~~~y~~~yh~~l~~~l~~l 329 (733)
+|+++|+++|++||+ .......+++|++++|+.++ |+++||.+|++.++|||||+|+||++|+.+||++++++|+++
T Consensus 81 ~~~~~l~~sv~~~~~--~~~~~~~~~~~l~~~l~~l~-~~~~DL~~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~l~~l 157 (566)
T PF06046_consen 81 KFFEALRESVEERFE--QAEEREENKSWLARHLEALR-WVLEDLQVVKDDVVPCFPPEYDIFNTYVSMYHNALSDHLQEL 157 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH--HhhhhccCchHHHHHHHHHH-HHHHHHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 33344567789999999999 999999999999999999999999999999999999999999
Q ss_pred H-hcCCccchhhhhccccccCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy12595 330 A-TSLEGNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVLKEEVIKELENKYFKYIQENYVDWMRKTLETEKEDWKS 408 (733)
Q Consensus 330 ~-~~l~~~di~~LL~wv~~~Y~~~~~l~~~~l~~~~~~l~plL~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~w~~ 408 (733)
. +++++++++.||+|+ ++|++ +|+++++.+ .+.++|+|+++..+.|+++|++.++++|++|+.|+++.|+++|.+
T Consensus 158 ~~~~l~~~~ll~ll~W~-~~Y~~--~m~~~~l~~-~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~w~~ 233 (566)
T PF06046_consen 158 ISPDLEANDLLSLLSWV-NTYPS--IMGHPDLAI-KEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEVKDWSE 233 (566)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCHHHHhhheech-hhChH--hhcCCcccc-hhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 999999999999995 88997 799888765 778999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-----
Q psy12595 409 CSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKM----- 483 (733)
Q Consensus 409 ~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~~l~~~v~~~~~~~l~~f~~~~~~~l~~~~~~~~~~~~~~----- 483 (733)
+.+|+.|.+|+|+|++|+|+||||+||+++| +..+..+|+..|+.++.+|+..|++.+.++.++|+.+++.+
T Consensus 234 ~~~Pe~~~dg~y~t~~~~difqmi~qql~va---~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (566)
T PF06046_consen 234 EKEPEEDEDGYYHTPLPVDIFQMINQQLDVA---SESLQGKVLQRVLEELANFLKSYQDAWQEFKEEHFKDRSSVKPKEN 310 (566)
T ss_dssp -S--EE-TTS-EE-HHHHHHHHHHHHHHHHH---HHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cCCCCcCCCCCeecCcHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 9999999999999999999999999999999 44455688888899999999999999999998888655444
Q ss_pred -chhhHHHHHHhcChHHHHHHHHHHHhhhhhcccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcC
Q psy12595 484 -VYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSEL--HRSDASNKFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLM 560 (733)
Q Consensus 484 -~~~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lf 560 (733)
+++++|+||++|||.+|+++++++..++.+. ++ |.......++.+.++|.++++.|+++|++.||.||+|+|+++|
T Consensus 311 ~~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lf 389 (566)
T PF06046_consen 311 PPGYLEYLIAVANNCLRCRDYVESLEQKFEEK-VSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLF 389 (566)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTT
T ss_pred ccchHHHHHHHhccHHHHHHHHHHHHHhcccc-cchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 8999999999999999999999999998642 22 2222334678899999999999999999999999999999999
Q ss_pred CCccCCCchhHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHH
Q psy12595 561 TAKWLTSTVSIQTICMTLDDYFQDYCH-LVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQL 639 (733)
Q Consensus 561 t~~W~~~~~~v~~I~~t~~dy~~d~~~-l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l 639 (733)
|++||++ ++|++||.|++||++||++ |++++|+.|++++++++|.+|+++||+||++|++..+|+.+|++|++|++.+
T Consensus 390 t~~W~~~-~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l 468 (566)
T PF06046_consen 390 TKKWYSG-EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQL 468 (566)
T ss_dssp SGGGCTS--HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHH
T ss_pred cCcCcCc-chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999 5899999999999999987 9999999999999999999999999999999998888999999999999999
Q ss_pred HHHHhhccCCCC--CchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcc
Q psy12595 640 KNLFSKYTTNID--APLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQKTK 717 (733)
Q Consensus 640 ~~~F~~~~s~~~--~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l~~~~ 717 (733)
++||.++++... +.+.+|+.++++++++|++++.+++.+|++.|||++.+||++||.+|||++|++++++++.++...
T Consensus 469 ~~~F~~~~~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~r~~~~~il~~~~~~~ 548 (566)
T PF06046_consen 469 KSFFSKLGSKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLSRSEVKEILEILREII 548 (566)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Confidence 999999994332 788999999999988999999999999999999999999999999999999999999999977642
Q ss_pred --CCC-CCCcCCccccCC
Q psy12595 718 --ANR-RFSYSKSLFHKI 732 (733)
Q Consensus 718 --~~~-~~~~~~tifs~i 732 (733)
.+. +.|+.|||||+|
T Consensus 549 ~~~~~~~~~~~~~ifs~i 566 (566)
T PF06046_consen 549 KSYPANAEPPPPTIFSRI 566 (566)
T ss_dssp HHHHCCCH-----GGGG-
T ss_pred hccccccCCCCCCCCCCC
Confidence 222 224677899987
No 3
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-81 Score=653.06 Aligned_cols=692 Identities=20% Similarity=0.281 Sum_probs=569.9
Q ss_pred hHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy12595 14 NVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP 93 (733)
Q Consensus 14 ~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~ 93 (733)
.|+.++++.+++|.+|+++..++++.++ ..+|.+.....--.+.. .|....+.+.++.....++.++|+...
T Consensus 3 ~~l~q~~~~~~~d~~l~~v~Di~eq~~k-----f~~l~~h~~~~~~e~~~---~ln~~~n~~~~i~~~~~e~~~l~e~~r 74 (742)
T COG5173 3 KALTQLSETLRHDSDLQTVLDIIEQSTK-----FEALEHHDGNLSAEISK---CLNNILNISKRIYGLEEELKSLVEGKR 74 (742)
T ss_pred hHHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 5899999999999999999999999876 23333333222222222 467778888899999999999999888
Q ss_pred hhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhh--------hcCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12595 94 PLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWI--------SEGKLLHAHQSLMDLEKSRDELMYETHKL 165 (733)
Q Consensus 94 ~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll--------~~~~LL~ah~~L~~LE~~rd~~l~e~~~~ 165 (733)
.+|..|+-+-++....++..++..+..+|.++..-.+.+++++ .-+|||++|+.|..+++||.++.+++.
T Consensus 75 ~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied~l~~~l~eD~dmPnLl~~H~kl~~ardF~eq~~~~a~-- 152 (742)
T COG5173 75 RNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVEFSDRIEDILGTVLTEDIDMPNLLAYHTKLYDARDFGEQLDMYAT-- 152 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHccHHHHhHHHHHHHh--
Confidence 6665555555554444444444444444444444444444443 335999999999999999999988763
Q ss_pred cCCChhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhhcC-chHHHHHHHHHHhhhhhhhhHHH-H-hhc----CCC
Q psy12595 166 SGQSMADKLLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKE-PTVIVTALRIIEREEHLDQMCMQ-K-KQQ----SNY 238 (733)
Q Consensus 166 ~~~~~~~~~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~~~-~~~lv~a~rIie~EE~~D~~~~~-~-~~~----~~~ 238 (733)
..+.++..++.+.|+.+++++..|++.+..++++++++|+.| -.+.++.++|+|.||++|+...+ | +++ |.-
T Consensus 153 -e~~~D~~~tv~k~fs~l~~~s~~Fd~lvl~~~~~iie~vksghi~~~~~ifkIve~EE~~De~~~~Irdaks~lp~SQD 231 (742)
T COG5173 153 -EISHDDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHIEAMDKIFKIVEKEEARDELTRKIRDAKSELPKSQD 231 (742)
T ss_pred -hcccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCcCC
Confidence 345567899999999999999999999999999999999998 47999999999999999988876 2 111 110
Q ss_pred CC-------------CCCchhHHHHHHHHHHHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccc
Q psy12595 239 MP-------------IGRPKQWRKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFP 305 (733)
Q Consensus 239 ~~-------------~~~pk~~r~~~~~~l~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fP 305 (733)
-| ..+||+++++....|+.||.+.|.........++. + +..-.|+++||..++..+..|||
T Consensus 232 ~P~~~~~~gmyr~~~~~~~r~lk~f~i~~i~~sv~e~F~r~r~~yi~d~s-g-----elnmDfIf~dL~~i~e~i~~~~p 305 (742)
T COG5173 232 NPVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRNEYIFDNS-G-----ELNMDFIFKDLSFIRENISLSFP 305 (742)
T ss_pred CcchHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-c-----hhhhHHHHHHHHHHHHHccccCC
Confidence 11 25799999999999999999999887655444431 1 11238999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH-hcCCccchhhhhccccccCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHH
Q psy12595 306 PHYNIVTSFMRMYHDCLSIHLEEMA-TSLEGNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVLKEEVIKELENKYF 384 (733)
Q Consensus 306 p~~~I~~~y~~~yh~~l~~~l~~l~-~~l~~~di~~LL~wv~~~Y~~~~~l~~~~l~~~~~~l~plL~~~~~~~L~~~Y~ 384 (733)
|+|+|+..|...|.+|+...+.+.+ .++++..++.|+.|+.++|.. ++ .++++..+.++|.|.++.-+.|..+|+
T Consensus 306 p~~NI~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t---~e-~~f~f~~dev~~~l~d~e~g~L~~~Yt 381 (742)
T COG5173 306 PFDNILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNT---IE-SKFNFIADEVGGRLLDNETGELLEKYT 381 (742)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHH---HH-HhCCccHHHhcccccCCcchHHHHHHH
Confidence 9999999999999999999999999 999999999999998554442 33 357788888999999999899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHH
Q psy12595 385 KYIQENYVDWMRKTLETEKEDWK-SCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQ-ELTERILLLSVEHVTEYG 462 (733)
Q Consensus 385 ~~~~~~l~ew~~~~l~~e~~~w~-~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~-~l~~~v~~~~~~~l~~f~ 462 (733)
++++.+|+||..|+.+.|+..|. |..||+.|+||.|++||.+.+||||.||+.+++..+. +++..|+......+..++
T Consensus 382 ~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn~sdvvgiV~~~i~~~~tk~q 461 (742)
T COG5173 382 KLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTNRSDVVGIVFAHITRTITKYQ 461 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCCccchhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999 8999999999999999999999999999999987666 888899999999999999
Q ss_pred HHHHHHHHHHHHhhcc--ccc-ccchhhHHHHHHhcChHHHHHHHHHHHhhhhhcccc--ccccccchHHHHHHHHHHHH
Q psy12595 463 KMSKDALKELKVEHFK--DRS-KMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSEL--HRSDASNKFEALLKVFEELR 537 (733)
Q Consensus 463 ~~~~~~l~~~~~~~~~--~~~-~~~~~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 537 (733)
..|++.+.+-..+.++ +.+ .|.++.+|+||++|++++|++|+.++..+..+ .++ |++.....+....++|.+++
T Consensus 462 ~~wks~l~ee~~kq~~~npEs~~p~Gl~eyliav~Nd~lK~A~y~~~~~sntfe-Litseye~d~~~~lgkTvDgfi~I~ 540 (742)
T COG5173 462 EIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAVGNDGLKIAQYITSLPSNTFE-LITSEYENDEVKELGKTVDGFIDIL 540 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCcchHHHHHHHHcCCcchHHHHHHhcchhhhh-hhhHHHHHHHHHHhcccchhHHHHH
Confidence 9999988666555452 233 34599999999999999999999999887654 333 44443345666679999999
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCccCCCchhHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Q psy12595 538 NDSAQYLLEEAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYC-HLVGKNLEFIILEAEELVVTRYIASMLQKK 616 (733)
Q Consensus 538 ~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~~~v~~I~~t~~dy~~d~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~ 616 (733)
+.+...|+..|+.||+|++.++|++.||.|+ .+..|+.|+.||+.||+ +|.+..|..|++++...++..|+++|.+++
T Consensus 541 ~~s~~~l~~~i~~d~~pa~~~iF~~~Wy~gS-~~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~~k~ 619 (742)
T COG5173 541 KASNTFLAEFIIYDCQPAIDKIFTDEWYGGS-VTKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLGRKR 619 (742)
T ss_pred hhhhHHHHHHHHHhhhhhHHHhcCccccccc-hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999988 69999999999999996 899999999999999999999999998777
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHH
Q psy12595 617 VIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID--APLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRL 694 (733)
Q Consensus 617 ~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~--~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~ai 694 (733)
..+.. ..|.++|++|...++++|.+|+...+ .++.++..+.-.+.+++.+.+..+|..|+..|||++.+.+.+|
T Consensus 620 a~~~~----~na~~~lksD~~~~y~~f~~y~d~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~sli~~I 695 (742)
T COG5173 620 ASIAE----ENASRTLKSDHTKLYEMFSGYGDPEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKKSLIKTI 695 (742)
T ss_pred hhhcc----hhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHhccchHHHHHHH
Confidence 66542 45999999999999999999988765 6666666666666667889999999999999999999999999
Q ss_pred HhhcCCCCHHHHHHHHHH--HHhccCCCCCCcCCccccCC
Q psy12595 695 LTLRGDLSRQEIRDIVLY--VQKTKANRRFSYSKSLFHKI 732 (733)
Q Consensus 695 L~~R~dl~r~e~~~il~~--l~~~~~~~~~~~~~tifs~i 732 (733)
|.+|.|++++-++...+. ++........+++||+||++
T Consensus 696 lk~R~Dl~~sIiqk~t~~~r~~~~~~~v~tsrepTifsr~ 735 (742)
T COG5173 696 LKKRQDLTESIIQKKTLADRLKECFTDVATSREPTIFSRL 735 (742)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccccccccCchHHHHH
Confidence 999999999955555444 44444444478999999974
No 4
>KOG2180|consensus
Probab=100.00 E-value=1.5e-47 Score=411.82 Aligned_cols=646 Identities=13% Similarity=0.154 Sum_probs=507.3
Q ss_pred hHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy12595 14 NVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP 93 (733)
Q Consensus 14 ~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~ 93 (733)
..+.+|+++|+..++|..|++++.++.-+...+|++|.+.|+.|-+.+.+|-+.|.+|+..|.++.++|.+|+..+++++
T Consensus 20 ~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te 99 (793)
T KOG2180|consen 20 NFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTE 99 (793)
T ss_pred hHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh-hchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcC------chHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12595 94 PLG-LKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEG------KLLHAHQSLMDLEKSRDELMYETHKLS 166 (733)
Q Consensus 94 ~~v-~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~------~LL~ah~~L~~LE~~rd~~l~e~~~~~ 166 (733)
.+| +.+++||++++|++||+++|++|+||+++.++|++++.|++.+ ++|+|..+|. ++|. ..+
T Consensus 100 ~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll--~~F~------~Yk-- 169 (793)
T KOG2180|consen 100 AMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLL--NHFI------AYK-- 169 (793)
T ss_pred HHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHH--HHHH------Hhc--
Confidence 999 5999999999999999999999999999999999999999988 7899999988 4562 222
Q ss_pred CCChhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhhcC-----chHHHHHHHHHHhhhhhhhhHHHHhhcCCCCCC
Q psy12595 167 GQSMADKLLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKE-----PTVIVTALRIIEREEHLDQMCMQKKQQSNYMPI 241 (733)
Q Consensus 167 ~~~~~~~~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~~~-----~~~lv~a~rIie~EE~~D~~~~~~~~~~~~~~~ 241 (733)
+ ...+...-+.|+.+...|..+|...+.+.++....+ -+.+..+|++++. .|
T Consensus 170 --~---v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~---le--------------- 226 (793)
T KOG2180|consen 170 --S---VDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDA---LE--------------- 226 (793)
T ss_pred --c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHH---hC---------------
Confidence 2 335555559999999999999999999999855542 2478899999986 22
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcccccccc-CCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccchHHHHHHHHHH
Q psy12595 242 GRPKQWRKMAMAVLEESVSQKIEGTQVDEK-GSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNIVTSFMRMYHD 320 (733)
Q Consensus 242 ~~pk~~r~~~~~~l~~sv~~r~~~~~~~~~-~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~I~~~y~~~yh~ 320 (733)
+.+|.---+|| ++..++++..-++ .++.+|| +.++++|.|+++-|....+...|.||++|.+-.+.+..||+
T Consensus 227 psvreelIkwf------~~qqL~ey~~IF~en~E~a~L-DkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~ 299 (793)
T KOG2180|consen 227 PSVREELIKWF------CSQQLEEYEQIFRENEEAASL-DKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCH 299 (793)
T ss_pred CccHHHHHHHH------HHHHHHHHHHHHhccHhhhhh-hhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHH
Confidence 24666666666 5666666543333 3577798 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hcCCccchhhhhcccccc----------CCCCCCCCCCccccC---CC--CCCCCCChhHHHHHHHHHH
Q psy12595 321 CLSIHLEEMA-TSLEGNEIVSMLTWAVNT----------YPGPDMMSNPELGAN---AT--PLGPVLKEEVIKELENKYF 384 (733)
Q Consensus 321 ~l~~~l~~l~-~~l~~~di~~LL~wv~~~----------Y~~~~~l~~~~l~~~---~~--~l~plL~~~~~~~L~~~Y~ 384 (733)
.+++.|..|+ +.-+..++-.++.-+++| |.|....+.|+-... .+ ...+.++ +|+++.+..|+
T Consensus 300 ~Tr~~L~~Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~is-ScFEPhLtlyI 378 (793)
T KOG2180|consen 300 QTRKQLESILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAIS-SCFEPHLTLYI 378 (793)
T ss_pred HHHHHHHHHHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHH-Hhcccchhhhh
Confidence 9999999999 655666666666665444 322111122221110 11 1234444 68999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12595 385 KYIQENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKM 464 (733)
Q Consensus 385 ~~~~~~l~ew~~~~l~~e~~~w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~~l~~~v~~~~~~~l~~f~~~ 464 (733)
+...+++.+.+.++...+ .|..+..++ ...+..++|++.|+|+.++.++..+.+++... .-++. ....+..|++.
T Consensus 379 ~~qek~l~ellek~v~e~--~~~~~p~~~-~~~~s~vlpSsadlF~~Ykkcltq~~~Ls~n~-dpl~~-~~~~f~k~Lre 453 (793)
T KOG2180|consen 379 ESQEKELSELLEKFVSEE--KWDGEPKSN-TDEESLVLPSSADLFVAYKKCLTQCSELSENN-DPLIA-LLAVFSKWLRE 453 (793)
T ss_pred hHHHHHHHHHHHHHHhhh--ccCCCCCCC-cccccccCccHHHHHHHHHHHHHHHHHhccCC-chHHH-HHHHHHHHHHH
Confidence 999999999999999766 354422333 55667799999999999999999887766531 11111 11145666666
Q ss_pred HHHHHHH-HHHh----------hc----cc---ccccchhhHHHHHHhcChHHHHHHHHHHHhhhhhcccccccccc--c
Q psy12595 465 SKDALKE-LKVE----------HF----KD---RSKMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSDAS--N 524 (733)
Q Consensus 465 ~~~~l~~-~~~~----------~~----~~---~~~~~~~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ 524 (733)
|...+-. +... ++ .. ....+....-+|++.+...+|..++.+++.++.+. +. ..+. .
T Consensus 454 Ya~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~-~~--~~~~~~v 530 (793)
T KOG2180|consen 454 YAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKLKEI-VD--ASYIKGV 530 (793)
T ss_pred HHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHhhhc
Confidence 6532210 0000 00 00 00111245567999999999999999999987642 11 2222 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCCc------hhHHHHHHHHHHHHHhhhh---hhhhhHHH
Q psy12595 525 KFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTST------VSIQTICMTLDDYFQDYCH---LVGKNLEF 595 (733)
Q Consensus 525 ~~~~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~------~~v~~I~~t~~dy~~d~~~---l~~~~~~~ 595 (733)
+++...+.|..+...+.+.+++.+.+.|.|.+..|....|..-. +++..++.++..+.++++. +.+.||..
T Consensus 531 s~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~ 610 (793)
T KOG2180|consen 531 SFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKMQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKYFAQ 610 (793)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHHHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccchHHH
Confidence 67888999999999999999999999999999999999998632 6899999999999999864 47778999
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------------CchhHHHHHHH
Q psy12595 596 IILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID-------------APLDCILALSE 662 (733)
Q Consensus 596 l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~-------------~~~~~l~~l~e 662 (733)
||..+...|++.++..|. +|+.+. ..+++|+..|.+.+++.|..+|+..+ ....-++.+..
T Consensus 611 fc~r~a~~f~~kf~~~l~----R~k~~s--~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK 684 (793)
T KOG2180|consen 611 FCVRLAASFIPKFLNVLF----RAKPIS--VVGAEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIK 684 (793)
T ss_pred hhHHHHhhcchHHHHHHH----HhhhHh--hhHHHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999996 566666 88999999999999999999987543 22223334444
Q ss_pred HhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhc
Q psy12595 663 VLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQKT 716 (733)
Q Consensus 663 li~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l~~~ 716 (733)
++. ++.+....++..+...-||.+....+.||++|| ++|.++..++.-++.+
T Consensus 685 ~lm-~p~~~~~~f~e~yikL~~~~~~a~~~~vLelKg-v~r~d~~~~l~~~~~~ 736 (793)
T KOG2180|consen 685 VLM-TPLDPADDFYEQYIKLLPDPDSAEWQKVLELKG-VKRDDALWKLLWFAYN 736 (793)
T ss_pred HHh-CCCCchHHHHHHHHHhcCCCcHHHHHHHHHhcC-CcHHHHHHHHHHHHHh
Confidence 444 555666777888888889999999999999999 9999999999997765
No 5
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.97 E-value=1.7e-28 Score=264.32 Aligned_cols=348 Identities=12% Similarity=0.152 Sum_probs=277.2
Q ss_pred hHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy12595 14 NVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP 93 (733)
Q Consensus 14 ~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~ 93 (733)
+|+.+|+++||+|++|+.|+.+..++..++..+|.+|+..|++|......|-+.|.+|+..|.+|..+|.+|+..+.+++
T Consensus 5 dpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE 84 (383)
T PF04100_consen 5 DPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE 84 (383)
T ss_pred CHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh-hchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcC------chHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12595 94 PLG-LKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEG------KLLHAHQSLMDLEKSRDELMYETHKLS 166 (733)
Q Consensus 94 ~~v-~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~------~LL~ah~~L~~LE~~rd~~l~e~~~~~ 166 (733)
.+| +.+++||+++.|++||+.+|+.|+||+++...+++++.++..+ ++|.|..+|+ +.|..
T Consensus 85 ~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~--~~F~~---------- 152 (383)
T PF04100_consen 85 QMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL--EHFKP---------- 152 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHHHc----------
Confidence 999 5899999999999999999999999999999999999999998 6788888887 55632
Q ss_pred CCChhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhh-cC----chHHHHHHHHHHhhhhhhhhHHHHhhcCCCCCC
Q psy12595 167 GQSMADKLLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVR-KE----PTVIVTALRIIEREEHLDQMCMQKKQQSNYMPI 241 (733)
Q Consensus 167 ~~~~~~~~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~-~~----~~~lv~a~rIie~EE~~D~~~~~~~~~~~~~~~ 241 (733)
.. ++..+......+..+...|..+|...+..++.... .+ ...|..||.|++. .|...
T Consensus 153 yk---si~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~---L~~~~------------ 214 (383)
T PF04100_consen 153 YK---SIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDA---LGPDV------------ 214 (383)
T ss_pred cc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHH---cCchH------------
Confidence 11 24567777799999999999999999999883221 11 3589999999998 33221
Q ss_pred CCchhHHHHHHHHHHHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccchHHHHHHHHHHH
Q psy12595 242 GRPKQWRKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNIVTSFMRMYHDC 321 (733)
Q Consensus 242 ~~pk~~r~~~~~~l~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~I~~~y~~~yh~~ 321 (733)
..+.-..|.+..-.....-|. .+++.+|| +.++++|.|+++-|..+++....+|||+|+|-...+..||..
T Consensus 215 --r~~li~wf~~~qL~eY~~iF~------~~~e~~~L-d~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~ 285 (383)
T PF04100_consen 215 --REELIDWFCNKQLKEYRRIFR------ENDEAASL-DNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEI 285 (383)
T ss_pred --HHHHHHHHHHHHHHHHHHHHc------ccccccch-hhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHH
Confidence 111222222222222333332 24456688 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-hcCCccchhhhhccccccCCCCCCCCCCcc-c-----------cCCC----CCCCCCChhHHHHHHHHHH
Q psy12595 322 LSIHLEEMA-TSLEGNEIVSMLTWAVNTYPGPDMMSNPEL-G-----------ANAT----PLGPVLKEEVIKELENKYF 384 (733)
Q Consensus 322 l~~~l~~l~-~~l~~~di~~LL~wv~~~Y~~~~~l~~~~l-~-----------~~~~----~l~plL~~~~~~~L~~~Y~ 384 (733)
++++|..++ ..-+.-++-.||.-+++|-.-+..|. .++ | .+.. ...-.+ .+++++.+..|+
T Consensus 286 Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~-~rF~~~~~~~~~~~~~~e~~~~~~~f~g~I-S~~FepyL~iyv 363 (383)
T PF04100_consen 286 TRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELA-KRFAGSTDESQEIEKKKEMKEIAENFKGII-SSCFEPYLSIYV 363 (383)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH-HHhcccccccccccccccccccccccccch-HHhhHhhHHHHH
Confidence 999999999 65555677777777655521110110 111 0 0000 111223 369999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12595 385 KYIQENYVDWMRKTLETE 402 (733)
Q Consensus 385 ~~~~~~l~ew~~~~l~~e 402 (733)
+...++|.+-+.+++..+
T Consensus 364 ~~qdk~L~~~l~~~~~~~ 381 (383)
T PF04100_consen 364 DSQDKNLSEKLDKFISEE 381 (383)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999765
No 6
>KOG0412|consensus
Probab=99.30 E-value=1.7e-06 Score=95.90 Aligned_cols=649 Identities=14% Similarity=0.175 Sum_probs=344.4
Q ss_pred HHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Q psy12595 18 QLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQ--LDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPL 95 (733)
Q Consensus 18 ~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~q--l~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~ 95 (733)
.+.+++..--+++-|+..-.++..+-+.++.+|.+.++.| +++ ..+.+|+.....+.-+.....+.......+..+
T Consensus 22 ~~~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~--~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~l 99 (773)
T KOG0412|consen 22 KVGELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQQQTIEG--ENMSALTRSAENLLTVEGDAKELTDAIKNTCVL 99 (773)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh--hHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHH
Confidence 4455555555788888889999999999999999999873 343 333444444444444444444433333332333
Q ss_pred hh-chHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHH
Q psy12595 96 GL-KLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQSMADKL 174 (733)
Q Consensus 96 v~-~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~~ 174 (733)
-+ .-.+|+.++.++..+..++...+.+..+..-++-+...++......|-.++-+.-.. |..+.+..-.....|.+
T Consensus 100 Ae~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflsl-D~~~i~~~~~~~~~~ts-- 176 (773)
T KOG0412|consen 100 AETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSL-DQALIESRFAKQVVPTS-- 176 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CHHHHhhhhhhccCCch--
Confidence 32 447899999999999999999999999999999999999999888887777655444 55555443111111111
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhhcC--ch--------------------HHHHHHHHHHhhhhhhhhHHHH
Q psy12595 175 LLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKE--PT--------------------VIVTALRIIEREEHLDQMCMQK 232 (733)
Q Consensus 175 ~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~~~--~~--------------------~lv~a~rIie~EE~~D~~~~~~ 232 (733)
.+..-..-+....+.+...+|.=+ .+.++.+ |+ --+-.|+||..+.+.--...
T Consensus 177 ~i~~~~~~L~~a~e~L~~l~~~~f---~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~l~n~-- 251 (773)
T KOG0412|consen 177 EISDPYETLKEAKERLSKLFKERF---TEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIASKARKNLANV-- 251 (773)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH---HHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 112111222233333333333322 2233332 11 23344455544322211110
Q ss_pred hhcCCCCCCCCchhHHHHHHHHHHHHHHHhhccccc----cccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCcccccc
Q psy12595 233 KQQSNYMPIGRPKQWRKMAMAVLEESVSQKIEGTQV----DEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHY 308 (733)
Q Consensus 233 ~~~~~~~~~~~pk~~r~~~~~~l~~sv~~r~~~~~~----~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~ 308 (733)
..++ ..+.+-...-.-++-.+-+.|..-++..+. ..+.. .++..++.+..- =|+.. .- +. ..|
T Consensus 252 -~~~~-~~~~r~qv~fad~Lt~lfe~va~IIe~n~piie~~YG~~---~li~~i~~LQ~e--cD~q~-s~-il----~~f 318 (773)
T KOG0412|consen 252 -KAGM-EDDNRRQVFFADTLTMLFEGVARIIEANQPILETYYGLK---KLIDVIEKLQAE--CDLQG-SL-IL----DEF 318 (773)
T ss_pred -Hhcc-ccCchhHhHHHHHHHHHHHHHHHHHHcccHHHHHHhCch---hHHHHHHHHHHH--HHHHH-HH-HH----HHH
Confidence 0000 111111122222233333344443433221 11111 122222222111 11210 00 00 001
Q ss_pred chHHHHHHHHHHHHHHHHHHH----------Hh-cCCccchhhhhccc------cccCCCCCCCCCCccccC--CC---C
Q psy12595 309 NIVTSFMRMYHDCLSIHLEEM----------AT-SLEGNEIVSMLTWA------VNTYPGPDMMSNPELGAN--AT---P 366 (733)
Q Consensus 309 ~I~~~y~~~yh~~l~~~l~~l----------~~-~l~~~di~~LL~wv------~~~Y~~~~~l~~~~l~~~--~~---~ 366 (733)
.=++.+....| .+.+..... +. .+++.|+-.++.=+ ..-|. .+|. .+++.. .. .
T Consensus 319 ~~~Rri~~~~~-~In~~~~~~~~~~~~~~~~ie~~p~p~Eid~ii~Ei~~mn~~~emY~--rF~~-~ki~~~~~v~~~s~ 394 (773)
T KOG0412|consen 319 MDRRRISHLNS-DINESIHRQKNNINKNAEAIEDAPDPREIDAIITEITMMNQRSEMYS--RFMS-RKIGSNEVVESPSQ 394 (773)
T ss_pred HHHHHHHHHHH-HHhHHHHHhhcccccchhhhccCCChHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHhhhhhhhccCC
Confidence 11111111111 112222211 11 13344444433211 01121 0111 011111 00 0
Q ss_pred C-CCCCChhHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHhhhcc----CCCCCCCC-CCccccchhHHHHHHHHHHH
Q psy12595 367 L-GPVLKEEVIKE--LENKYFKY--IQENYVDWMRKTLETEKEDWKS----CSPPDSDG-EGHYHTAAPVIIFQMIDQNL 436 (733)
Q Consensus 367 l-~plL~~~~~~~--L~~~Y~~~--~~~~l~ew~~~~l~~e~~~w~~----~~~P~~d~-dg~~~t~~~~dlfqmi~~ql 436 (733)
- +|--+++.... -.+.+.+. .-..|.+.+.+-+..|.=-..+ .-+.++-. -|.+.|+.--|+|=++++++
T Consensus 395 ~~~~~~d~e~~~~~~~~~~f~n~s~~~~~mQel~~~y~~LE~yfm~esv~kAi~ld~ye~~~~~~SSmVDDV~yivrk~i 474 (773)
T KOG0412|consen 395 DGDTSEDPEVRQELKCMKKFLNNSRVLTKMQELIRNYLLLEEYFMLESVQKAIKLDEYEDAGQLTSSMVDDVFYIVRKCI 474 (773)
T ss_pred CCCcccCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcchhhhhhhHHHHHHHHH
Confidence 0 11112222222 12333332 4566777777777766432111 12233222 57788888899999999999
Q ss_pred HHHHhhhH-HHHHHHHHHHHHHHHH-HH-----------HHHHHHH----HHHHHhhcccccccchhhHHHHHHhcChHH
Q psy12595 437 QLTKDISQ-ELTERILLLSVEHVTE-YG-----------KMSKDAL----KELKVEHFKDRSKMVYFTHFMIAMLNNCLK 499 (733)
Q Consensus 437 ~~a~~~~~-~l~~~v~~~~~~~l~~-f~-----------~~~~~~l----~~~~~~~~~~~~~~~~~~e~liA~~N~~~~ 499 (733)
..|...++ +....+++.....+.+ |. ..+..++ ..|......+.+ +..-.+-.+...||...
T Consensus 475 rRA~~T~si~~~~a~iN~~~~~l~ndf~~~L~~kLrs~~~~~~sa~N~i~s~lq~~k~~~~d-~d~~~~~fl~~LNn~~l 553 (773)
T KOG0412|consen 475 RRALSTSSIDSLCAFINEATALLDNDFLVALQSKLRSIQGGAASALNIIQSSLQAGKAEDED-ADLAKENFLTALNNADL 553 (773)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHhhHHH
Confidence 98866554 6666666665554432 21 1111221 111111111112 33333444556799999
Q ss_pred HHHHHHHHHhhhhhcccc-ccccc--------cchHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhhhcCCCccCC---
Q psy12595 500 FVELAHQMKQTFWKRSEL-HRSDA--------SNKFEALLKVFEELRNDSAQYLLEEAF-LDLLPHFQDLMTAKWLT--- 566 (733)
Q Consensus 500 ~~~~~~~l~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~l~~~~~~~L~~~i~-~dl~p~~~~lft~~W~~--- 566 (733)
|.+|..+|.+-+.+.+.. +.... ..+++.+...|.++.+.++..|...++ ..++|.+..+.+...-.
T Consensus 554 s~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~id~f~~is~~ls~e 633 (773)
T KOG0412|consen 554 SKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRPWIDTFVNISYNLSEE 633 (773)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhhhhhhhhccccHH
Confidence 999999988666542211 11111 025677778888899999999999877 68899888866543321
Q ss_pred -------CchhHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHH
Q psy12595 567 -------STVSIQTICMTLDDYFQDYCH-LVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQ 638 (733)
Q Consensus 567 -------~~~~v~~I~~t~~dy~~d~~~-l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~ 638 (733)
++++|.+.+..+++-+-.++. |.|..|..|+.-+.+. +..|+...+. +..|. .-++-++-+|...
T Consensus 634 dy~~~ea~d~~Vq~fl~~v~~l~~~~k~~ltp~nY~sLlsl~~~~-ia~~LE~~i~-k~~FN-----rlG~lqLDre~r~ 706 (773)
T KOG0412|consen 634 DYAAYEANDPWVQQFLSSVEQLLAELKNSLTPENYDSLLSLIVDE-IATQLEQIIW-KIQFN-----RLGGLQLDRELRA 706 (773)
T ss_pred HHhhhccCChHHHHHHHHHHHHHHhhhcccChhhHHHHHHHHHHH-HHHHHHHHHH-HhHHH-----hhcchHhhHHHHH
Confidence 236899999999999999986 8999999998865554 4455554432 24444 5688899999999
Q ss_pred HHHHHhhccCC-CCCchhHHHHHHHHhccCCCchhHHHHHHHhh--hCCCCCHHHHHHHHhhcCCCC
Q psy12595 639 LKNLFSKYTTN-IDAPLDCILALSEVLKNEDSEMLSLDLHTLLN--KYPDISDDHISRLLTLRGDLS 702 (733)
Q Consensus 639 l~~~F~~~~s~-~~~~~~~l~~l~eli~~~d~~~i~~~~~~l~~--~ypD~~~~~v~aiL~~R~dl~ 702 (733)
+..+|+....- ....+..|.-|+-++.+.+.+.+ ++++.--. .-|-+++..|.++|.+|-|+.
T Consensus 707 lis~lt~~t~~~lRdKf~RLtQIatLLnle~~se~-le~w~~~~g~~twrLt~~EVr~vl~lr~df~ 772 (773)
T KOG0412|consen 707 LISYLTGVTQWNLRDKFARLTQIATLLNLEKDSEI-LEYWGPNSGPLTWRLTPAEVRKVLALRIDFT 772 (773)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHcccccchH-HHhcCCCCCCceEEeCHHHHHHHHHhhccCC
Confidence 99999865442 22567778888888887655544 33333221 113478999999999999874
No 7
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.29 E-value=8.2e-06 Score=96.68 Aligned_cols=619 Identities=13% Similarity=0.182 Sum_probs=346.9
Q ss_pred hHHHHHHHhhCC--Cc-chhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 14 NVSKQLLTLLQR--SD-QLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVI----SGIQELKTVLEDMQTIKENIHEMK 86 (733)
Q Consensus 14 ~a~~~i~~ll~~--p~-~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~----~gl~~L~~a~~~v~~i~~~l~~i~ 86 (733)
++.+|||..|+. ++ .+++++.+...+..|....-.+++..++.....+- +.+.-+..-+.++..+++.+..|.
T Consensus 11 D~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~ 90 (766)
T PF10191_consen 11 DVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQ 90 (766)
T ss_pred CHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999995 22 36788777888888877777788888887777766 566777777888888888888888
Q ss_pred HHhccchhhh-hchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12595 87 NSLQVLPPLG-LKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKL 165 (733)
Q Consensus 87 ~~~~~~~~~v-~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~ 165 (733)
+..+..+... ..+..+.+++.+++++.++.+.|+.=-....-..++.++++.+++-.+..+|.++...=. -+...
T Consensus 91 ~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~----~l~~~ 166 (766)
T PF10191_consen 91 EEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLA----VLQDV 166 (766)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----HHcCC
Confidence 7776655433 577899999999999999999999888888888999999999999999999998876522 22222
Q ss_pred cCCChhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhhcC-chHHHHHHHHHHhhhhhhhhHHHHhhcCCCCCCCCc
Q psy12595 166 SGQSMADKLLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKE-PTVIVTALRIIEREEHLDQMCMQKKQQSNYMPIGRP 244 (733)
Q Consensus 166 ~~~~~~~~~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~~~-~~~lv~a~rIie~EE~~D~~~~~~~~~~~~~~~~~p 244 (733)
++- ++ .-..++.+.+.|+..+---+-.++..-..+ -..++.++..|+|+...-+.+..- |+
T Consensus 167 pd~--~~------r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~----------r~ 228 (766)
T PF10191_consen 167 PDY--EE------RRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKC----------RK 228 (766)
T ss_pred Cch--hH------HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HH
Confidence 111 11 113355555556666655555555422222 235666676676655443333210 12
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccc-hHHHHHHHHHH---
Q psy12595 245 KQWRKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYN-IVTSFMRMYHD--- 320 (733)
Q Consensus 245 k~~r~~~~~~l~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~-I~~~y~~~yh~--- 320 (733)
...+..|.+....... ..-..||....+ .+..-+..=...|..+||.++. +...++...-.
T Consensus 229 ~~l~~~W~~~~~~~~~-----------~~~~~~L~~fyd----~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~P 293 (766)
T PF10191_consen 229 APLQRLWQEYCQSDQS-----------QSFAEWLPSFYD----ELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQP 293 (766)
T ss_pred HHHHHHHHHHhhhccc-----------hhHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCc
Confidence 2233333322221110 111225543333 3333332222346889999887 33333332211
Q ss_pred HHHHHHHHHH-hcCCc---cchhhhhccccccCCCC-CCCCCCccccCCCCCCCC---CC--hhHHHHHHHHHHHHHHHH
Q psy12595 321 CLSIHLEEMA-TSLEG---NEIVSMLTWAVNTYPGP-DMMSNPELGANATPLGPV---LK--EEVIKELENKYFKYIQEN 390 (733)
Q Consensus 321 ~l~~~l~~l~-~~l~~---~di~~LL~wv~~~Y~~~-~~l~~~~l~~~~~~l~pl---L~--~~~~~~L~~~Y~~~~~~~ 390 (733)
.+..++...+ ...+. ..+..+..-..++..+- .+|.. ...+ ..+..+ +. -+.+.++...|-+...+.
T Consensus 294 S~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~--~~~~-~~l~~~~~l~~al~~PF~~~q~~Yg~lE~~~ 370 (766)
T PF10191_consen 294 SFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS--LPGE-SNLSKVEELLQALFEPFKPYQQRYGELERRF 370 (766)
T ss_pred cHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc--cccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344444444 22221 22222222221111110 11110 0000 011000 00 012455555665555555
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCC-ccccchhHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy12595 391 YVDWMRKTLETEKEDWKSCSPPDSDGEG-HYHTAAPVIIFQMIDQNLQLTKDISQEL-TERILLLSVEHVTEYGKMSKDA 468 (733)
Q Consensus 391 l~ew~~~~l~~e~~~w~~~~~P~~d~dg-~~~t~~~~dlfqmi~~ql~~a~~~~~~l-~~~v~~~~~~~l~~f~~~~~~~ 468 (733)
+..-+..+.- . .++ ..|. .-...+...+|.+.++-+++|..++.+. ....+..+-..+..|...|...
T Consensus 371 L~~~L~~l~~-------~--~~~-~~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Ald~~~~~y~~~~~~~ 440 (766)
T PF10191_consen 371 LSAQLSALDL-------E--SAE-LSDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKALDSIFSQYLSSLTAT 440 (766)
T ss_pred HHHHHHhccc-------C--CCc-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554443311 0 000 0000 1224456788999999999998877643 2233344444456666666666
Q ss_pred HHHHHHhhcccc----cc--cc-hhhHHHHHHhcChHHHHHHHHHHHhhhhhccc----cc-------------------
Q psy12595 469 LKELKVEHFKDR----SK--MV-YFTHFMIAMLNNCLKFVELAHQMKQTFWKRSE----LH------------------- 518 (733)
Q Consensus 469 l~~~~~~~~~~~----~~--~~-~~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~----~~------------------- 518 (733)
+.........+. +. .. .+....+.++..|-.+..-+..++..+..... .+
T Consensus 441 l~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 520 (766)
T PF10191_consen 441 LRSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELASKLLSSSFSSSSDTGEAASGDT 520 (766)
T ss_pred HHHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccccccccccc
Confidence 644333221110 00 11 13344455555554443333333222211100 00
Q ss_pred cccc-----------------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCC-C
Q psy12595 519 RSDA-----------------------------------SNKFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMT-A 562 (733)
Q Consensus 519 ~~~~-----------------------------------~~~~~~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft-~ 562 (733)
.... ...+......+..+.+.|+....+.+|.-++.+++.+.+ +
T Consensus 521 ~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~~~ 600 (766)
T PF10191_consen 521 RSSSPNPWKGYNYLAASRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPSLP 600 (766)
T ss_pred CcccccchHHHHhhccccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCc
Confidence 0000 001223334455667788899999999999999999986 6
Q ss_pred ccCCC---c------h----hHHHHHHHHHHHHHhh-hhhhh--------------------------------hhHHHH
Q psy12595 563 KWLTS---T------V----SIQTICMTLDDYFQDY-CHLVG--------------------------------KNLEFI 596 (733)
Q Consensus 563 ~W~~~---~------~----~v~~I~~t~~dy~~d~-~~l~~--------------------------------~~~~~l 596 (733)
.|-.. + + .-..-+..|.+|+-.+ ++|.| .+-...
T Consensus 601 ~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~w 680 (766)
T PF10191_consen 601 SWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEW 680 (766)
T ss_pred ccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHH
Confidence 78771 0 0 0122233344444443 23211 345567
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHhccCCCchhHHHH
Q psy12595 597 ILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSEMLSLDL 676 (733)
Q Consensus 597 ~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~~~~~~l~~l~eli~~~d~~~i~~~~ 676 (733)
+..+...+...|+..++. +.... ..++.|+.-|++-|.+.+..++- .....|..+..+++ .+++.+
T Consensus 681 l~~va~~~~~~~~~~i~~----i~~l~--~~~~~QL~~Di~Yl~nVl~aLg~---~~~~~L~~~~~ll~-~~~~~~---- 746 (766)
T PF10191_consen 681 LGKVARATCALYLEQILE----IPELS--ESGAKQLATDIDYLSNVLSALGL---SPPPNLQQLVTLLK-APPDQY---- 746 (766)
T ss_pred HHHHHHHHHHHHHHHHhc----cccCC--HHHHHHHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHc-CCHHHH----
Confidence 777888888899999973 33333 78999999999999999999986 35578889999998 455543
Q ss_pred HHHhhhCCCCCHHHHHHHHhhcC
Q psy12595 677 HTLLNKYPDISDDHISRLLTLRG 699 (733)
Q Consensus 677 ~~l~~~ypD~~~~~v~aiL~~R~ 699 (733)
..+.+ +++...+.+|=.||.
T Consensus 747 ~~~~~---~~~~~~~~~v~~mr~ 766 (766)
T PF10191_consen 747 AQVAK---GLPRRLVAAVAKMRN 766 (766)
T ss_pred HHHHh---cCCHHHHHHHHHHhC
Confidence 44433 778888888888873
No 8
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=98.66 E-value=0.0011 Score=78.85 Aligned_cols=555 Identities=12% Similarity=0.122 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhcCCchH--HHHHHhh---hhc-CchHHHHHHHHHHHHHHHHHHHHHhhccCCChhhH
Q psy12595 100 SDLRAQNNRHVQYVTAIENLTHVFAVPDS--VERTKQW---ISE-GKLLHAHQSLMDLEKSRDELMYETHKLSGQSMADK 173 (733)
Q Consensus 100 ~~ik~l~~~~~nl~~~~~~l~~l~~~~~~--v~~l~~l---l~~-~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~ 173 (733)
+.+..++..+.+-..+..-++++..+... ...+..+ ..+ .+..++-..+..|-.+-.++ + +.
T Consensus 27 ~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~ls~~~-------~-----~~ 94 (710)
T PF07393_consen 27 DQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRLSKEL-------S-----DI 94 (710)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHHHHhc-------C-----Cc
Confidence 44555555666666565555544332111 1122222 222 24566666666555442211 0 11
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHhhhhhhhhHHHHhhcCCCCCCCCchhHHHHH--
Q psy12595 174 LLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKEPTVIVTALRIIEREEHLDQMCMQKKQQSNYMPIGRPKQWRKMA-- 251 (733)
Q Consensus 174 ~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~~~~~~lv~a~rIie~EE~~D~~~~~~~~~~~~~~~~~pk~~r~~~-- 251 (733)
.....--+.++..++.|+..+..-|..... +.+...+.+++.|.-.=-.-. .-...|-.+.
T Consensus 95 ~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~--~~d~~~M~~~A~vL~~fngg~---------------~~i~~fi~k~~~ 157 (710)
T PF07393_consen 95 PGFEEARENIEKYCEIFENALLREFEIAYR--EGDYERMKEFAKVLLEFNGGS---------------SCIDFFINKHEF 157 (710)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHhChh
Confidence 222333467888888899888888887765 345667777777755411000 0012222211
Q ss_pred HH---HH-------HHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccchHHHHHH-HHHH
Q psy12595 252 MA---VL-------EESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNIVTSFMR-MYHD 320 (733)
Q Consensus 252 ~~---~l-------~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~I~~~y~~-~yh~ 320 (733)
|. .+ ...+.+.+.+..... ..+. ..++..++.+...+..-...+..+||+...|...|+. .|+.
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~l~d~~~~~-~~~~----~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~ 232 (710)
T PF07393_consen 158 FIDEDQLDESNGFEDEEIWEKLSDPDSHP-PINE----ESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQ 232 (710)
T ss_pred hhhhhhhccccccchhHHHHhccCccccc-ccch----HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 11 00 001112222211111 1111 1233333333333333333456789999999999996 7999
Q ss_pred HHHHHHHHHH-hcC--CccchhhhhccccccCCCC-----CCCCC-CccccCCC-CCCCCCC---hhHHHHHH--HHHHH
Q psy12595 321 CLSIHLEEMA-TSL--EGNEIVSMLTWAVNTYPGP-----DMMSN-PELGANAT-PLGPVLK---EEVIKELE--NKYFK 385 (733)
Q Consensus 321 ~l~~~l~~l~-~~l--~~~di~~LL~wv~~~Y~~~-----~~l~~-~~l~~~~~-~l~plL~---~~~~~~L~--~~Y~~ 385 (733)
.+..++..++ ... +..-.+..+.- .|... ++... ...+++.. ..++.+. .+.+++.+ +.|++
T Consensus 233 ~I~~~i~~lL~~a~~~s~~~YLr~l~~---~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF~~~l~~~~Yl~ 309 (710)
T PF07393_consen 233 VIQEYIESLLEEASSISTLAYLRTLHG---LYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLFEPYLEDDEYLE 309 (710)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHH---HHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999988 332 33222222222 23211 01000 00011111 1222222 24556666 77777
Q ss_pred HHHHHHHHHHHHHHHHHH------------------------------------------hhhcc---------------
Q psy12595 386 YIQENYVDWMRKTLETEK------------------------------------------EDWKS--------------- 408 (733)
Q Consensus 386 ~~~~~l~ew~~~~l~~e~------------------------------------------~~w~~--------------- 408 (733)
.....+++-+...+..=. ..+.+
T Consensus 310 ~E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (710)
T PF07393_consen 310 EEKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSSKLDRSQQQASLENN 389 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhcccCcccccccccch
Confidence 776666665555443311 00000
Q ss_pred ---------CCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhH--HH---HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy12595 409 ---------CSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQ--EL---TERILLLSVEHV-TEYGKMSKDALKELK 473 (733)
Q Consensus 409 ---------~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~--~l---~~~v~~~~~~~l-~~f~~~~~~~l~~~~ 473 (733)
...+....+|.+-...+..+.+-..+.+.+|..+++ ++ ...++..++..+ ..++..--++.....
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i~~~lea~~~~~ 469 (710)
T PF07393_consen 390 LDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHIEPALEAAYYKL 469 (710)
T ss_pred hhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 011122446677788888899999999999988773 32 223333333333 233222222111111
Q ss_pred Hhhc-ccccc-cchhhHHHHHHhcChHHHHHHHHHHHhhhhhcccccccccc----chHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 474 VEHF-KDRSK-MVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSDAS----NKFEALLKVFEELRNDSAQYLLEE 547 (733)
Q Consensus 474 ~~~~-~~~~~-~~~~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~L~~~ 547 (733)
.... ..... ++ +. | ..++|.+.......+...+...-|.+...+.+. .........+++-...+.+..++.
T Consensus 470 ~~~~~~~~~~~~~-l~-f-l~~i~~~~~i~~l~~~~~~~~l~pl~~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~ 546 (710)
T PF07393_consen 470 SSQDIAESKEVPP-LV-F-LELINQADTILQLLQIFYKEELLPLIQSSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDV 546 (710)
T ss_pred hcccccccCCCCC-cc-H-HHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 01111 22 22 3 333344333322222222111113221011111 112223333333334444444444
Q ss_pred HHhhhHHHhhhcCCCccCC----------CchhHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Q psy12595 548 AFLDLLPHFQDLMTAKWLT----------STVSIQTICMTLDDYFQDYC-HLVGKNLEFIILEAEELVVTRYIASMLQKK 616 (733)
Q Consensus 548 i~~dl~p~~~~lft~~W~~----------~~~~v~~I~~t~~dy~~d~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~ 616 (733)
+...++..+..--...... ..++...+|..++..+.-++ .+.......|+.++..++....++++.+
T Consensus 547 l~~~v~~iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~kk-- 624 (710)
T PF07393_consen 547 LMNWVEFILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLLKHLKK-- 624 (710)
T ss_pred HHHHHHHHHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4444444444322233322 11356777777777777775 4788889999999999999999988843
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHH
Q psy12595 617 VIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNI-DAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLL 695 (733)
Q Consensus 617 ~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~-~~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL 695 (733)
.++. ..||-++..|.....+++..++.+. ...|..|..++.++.+ +|+.+...+..... +.++.+.+...+
T Consensus 625 ~~vs-----~~Gg~~l~~Dl~~Y~~~~~~~~~~~v~~~F~~L~~l~nl~~v-~~~~l~~~~~~~~~--~~~~~~~i~~fi 696 (710)
T PF07393_consen 625 FTVS-----STGGLQLIKDLNEYQDFIRSWGIPSVDEKFEALKELGNLFIV-DPENLKELCREGQL--GRFSPEEIYEFI 696 (710)
T ss_pred CccC-----chhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhheee-cHHHHHHHHhhccc--cCCCHHHHHHHH
Confidence 4443 5789999999999999999986543 2788999999999986 77766555554333 678999999999
Q ss_pred hhcCCCCHH
Q psy12595 696 TLRGDLSRQ 704 (733)
Q Consensus 696 ~~R~dl~r~ 704 (733)
..|.|.++.
T Consensus 697 ~~R~D~~~~ 705 (710)
T PF07393_consen 697 QRRSDWKSI 705 (710)
T ss_pred HHhhhhhhc
Confidence 999998654
No 9
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=98.33 E-value=0.00011 Score=83.43 Aligned_cols=393 Identities=12% Similarity=0.191 Sum_probs=216.1
Q ss_pred HHHHHHHHHHhhcccccc----ccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCcccc----ccchHHHHHHHHHHHHH
Q psy12595 252 MAVLEESVSQKIEGTQVD----EKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPP----HYNIVTSFMRMYHDCLS 323 (733)
Q Consensus 252 ~~~l~~sv~~r~~~~~~~----~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp----~~~I~~~y~~~yh~~l~ 323 (733)
++++-+-+..||.-.+.. .+.+.+.|...++ .+|+.+-...+...+.|.+-+ .+++...|+..--..++
T Consensus 3 ~~~l~~p~~~rF~yHF~~~r~Tn~~~kPEw~f~~i---~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~ 79 (494)
T PF04437_consen 3 IDVLVNPFKKRFRYHFMGNRPTNRLDKPEWYFTFI---LKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVR 79 (494)
T ss_dssp HHHHCHHHHHHHHHHT----S---CCCHHHHHHHH---HHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcccchHHHHHHH---HHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHH
Confidence 344555556666554442 2333445765554 466776655555556677665 34555555555444455
Q ss_pred HHHHHHHhcC-Ccc-----chhhhhccc---cc--cCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q psy12595 324 IHLEEMATSL-EGN-----EIVSMLTWA---VN--TYPGPDMMSNPELGANATPLGPVLKEEVIKELENKYFKYIQENYV 392 (733)
Q Consensus 324 ~~l~~l~~~l-~~~-----di~~LL~wv---~~--~Y~~~~~l~~~~l~~~~~~l~plL~~~~~~~L~~~Y~~~~~~~l~ 392 (733)
+.+...+..+ +.. -|-.++.|- .+ .|++ + .....+.-|.. +...+.+++...+--.
T Consensus 80 ~Kl~~~l~~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~-d--------~~~~~~~vL~~----~~~~~~Wl~~E~~~a~ 146 (494)
T PF04437_consen 80 EKLRSDLPELLDDPSLLSHLIDEILSFDKELRSLYGYPG-D--------WQGSTLDVLCQ----PDWFDRWLNAEKEFAL 146 (494)
T ss_dssp HHHHHHH--TTS-HHHHHHHHHHHHHHHHHHHHTS---S---------------CGGGS-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHcCCCC-c--------cchhHHHHhcc----hHHHHHHHHHHHHHHH
Confidence 4444433111 111 111222221 01 1232 0 00001111222 4567888888888778
Q ss_pred HHHHHHHHHHHhhhc-cCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhH-HHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy12595 393 DWMRKTLETEKEDWK-SCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQ-ELTERIL-LLSVEHVTEYGKMSKDAL 469 (733)
Q Consensus 393 ew~~~~l~~e~~~w~-~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~-~l~~~v~-~~~~~~l~~f~~~~~~~l 469 (733)
+=++.++..+ ..|. .-.....+.+..-.|.++..+..+++.-.+....+.. +...+.+ ..=+..+..|..+....+
T Consensus 147 ~r~~~i~~s~-~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~ 225 (494)
T PF04437_consen 147 ERFDEIISSP-DAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSL 225 (494)
T ss_dssp HHHH----------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhhhcccc-hhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887666 4576 3222223555667789999999999888887766554 2222333 222333455555555555
Q ss_pred HHHHHhhcccc-cccchhhHHHHHHhcChHHHHHHHHHHHhhhhhc---------------ccc--ccccccchHHHHHH
Q psy12595 470 KELKVEHFKDR-SKMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKR---------------SEL--HRSDASNKFEALLK 531 (733)
Q Consensus 470 ~~~~~~~~~~~-~~~~~~~e~liA~~N~~~~~~~~~~~l~~~~~~~---------------~~~--~~~~~~~~~~~~~~ 531 (733)
..|........ .....-++.+|++.|++.++.....+..+..-=. .+. .+......+++...
T Consensus 226 ~~~~~~~s~~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~ 305 (494)
T PF04437_consen 226 EAFESSTSTLASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETIS 305 (494)
T ss_dssp HHHHHT----SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHH
T ss_pred HHHhhcccchhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHH
Confidence 44443100000 1123467788999999999876555443211000 000 00001125788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhcCC-CccCCCc-----------hhHHHHHHHHHHHHHhhhh-hhhhhHHHHHH
Q psy12595 532 VFEELRNDSAQYLLEEAFLDLLPHFQDLMT-AKWLTST-----------VSIQTICMTLDDYFQDYCH-LVGKNLEFIIL 598 (733)
Q Consensus 532 ~~~~l~~~~~~~L~~~i~~dl~p~~~~lft-~~W~~~~-----------~~v~~I~~t~~dy~~d~~~-l~~~~~~~l~~ 598 (733)
.|..+.+.+...+++.+..+++..++..++ .+|.... +-+...+..+..++..+.. |.+..|..+..
T Consensus 306 ~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r 385 (494)
T PF04437_consen 306 AYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWR 385 (494)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 899999999999999999999888888888 9997632 1335566677788888864 89999999999
Q ss_pred HHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHhccC
Q psy12595 599 EAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNE 667 (733)
Q Consensus 599 ~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~~~~~~l~~l~eli~~~ 667 (733)
.+...+..-.+..++..+ +|. ..||.|+..|...+...|..+.......+..+.....+|++.
T Consensus 386 ~ia~~l~~~l~~~Il~~n-~Fs-----~~Ga~Ql~~D~~~L~~~~~~~~~~p~~~f~~l~E~~~LL~L~ 448 (494)
T PF04437_consen 386 RIASKLDDYLWESILMSN-KFS-----RAGAAQLQFDMRALFSVFSQYTPRPEAFFKRLREACKLLNLP 448 (494)
T ss_dssp HHHHHHHHHHHHTTTTTS--B------HHHHHHHHHHHHHHHTTS--TTSGG-HHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhcC-eeC-----hhHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHcCCC
Confidence 999888888888777544 776 789999999999999999998766557778888888888864
No 10
>KOG2176|consensus
Probab=98.05 E-value=0.047 Score=62.58 Aligned_cols=619 Identities=15% Similarity=0.109 Sum_probs=331.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hhhhchHHHHHHHHHH
Q psy12595 31 KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP-PLGLKLSDLRAQNNRH 109 (733)
Q Consensus 31 kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~-~~v~~~~~ik~l~~~~ 109 (733)
+-.++..++......-|.+|-.....|-+|--.++..|..-+.++++++..+.+.+...+++. +++-...++.+.....
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556778888888889999999999999999999999999999998888765 5667889999999999
Q ss_pred HhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHhcHHHHHHH
Q psy12595 110 VQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSDVEKVSQL 189 (733)
Q Consensus 110 ~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~~~l~~~f~~v~~l~~~ 189 (733)
+|++++++.++.=.-+-+-+..+++.+..++..+|-..+-.||.-- |.++ + +-.-..++. ..+..+...
T Consensus 125 rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~y---L~~~---~--~~~~~~~i~---~~Ip~ik~~ 193 (800)
T KOG2176|consen 125 RNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVY---LPRV---S--NFRFLIVIQ---NRIPFIKEV 193 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH---HHhc---c--cchhhHHHh---hcchHHHHH
Confidence 9999999999988888888999999999999999988888887541 1111 1 000011222 233333333
Q ss_pred HHHHHHHHHHHHHhhhhcC-chHHHHHHHHHHhhhhhhhh-------HHH-Hhh--------------c----CC-----
Q psy12595 190 LEKQIKLILSRTLLTVRKE-PTVIVTALRIIEREEHLDQM-------CMQ-KKQ--------------Q----SN----- 237 (733)
Q Consensus 190 l~~~l~~~~~~~l~~~~~~-~~~lv~a~rIie~EE~~D~~-------~~~-~~~--------------~----~~----- 237 (733)
........+++.+.-.|.. |.+-..|+...+.--+++.. -.. +.. . ++
T Consensus 194 i~~~~~~~~~e~L~~irk~s~~iGq~ai~~~~~ar~r~~~~~~~~~~~~e~~~~~~l~~l~~~~~~e~d~~~~s~~~~~~ 273 (800)
T KOG2176|consen 194 IKSKSMSDFREWLENIRKKSPKIGQTAIQQAKEARQRWEEEKFNKQIEAEEQSTGSLAKLAYGLEFEEDDEHDSIMIFQD 273 (800)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccchHHHhhhhhHHHHhcccccccccccccchhccC
Confidence 3344444444444322222 33333344444321111111 000 000 0 00
Q ss_pred ------------CCCC------CCchhHHHHHHHHHHHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhH--HHHH
Q psy12595 238 ------------YMPI------GRPKQWRKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDL--RVVT 297 (733)
Q Consensus 238 ------------~~~~------~~pk~~r~~~~~~l~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL--~~v~ 297 (733)
|.|- -.+.+|++.|...-+.-=..+.......+ .+. + ..++....|+..+. .+|.
T Consensus 274 ~~~~~~~~~~~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~q~~~~~q~~--~t~--~-~~l~~~~ty~~~i~Gffive 348 (800)
T KOG2176|consen 274 LNELSGAIDKFDFEPLYRCLHIHSVLGLRERFRAYYQMNRRLQADLVLQPP--FTQ--L-DSLEGYQTYFNQIAGFFIVE 348 (800)
T ss_pred cccccchheeecccHHHHHHHHHHHHhhHHHHHHHHHHhHHHhhhcccCCC--cch--h-hHHHHHHHHHHHHhhHHHHH
Confidence 0110 13566777776655544333333222111 111 1 13555556666655 3566
Q ss_pred hcCcCccccc--cchHHHHHHHHHHHHHHHHHHHH-hcCCccchhhhhccccccCCCCCCCCCCccccCCCCCCCCCChh
Q psy12595 298 TLCGPCFPPH--YNIVTSFMRMYHDCLSIHLEEMA-TSLEGNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVLKEE 374 (733)
Q Consensus 298 ~~~~~~fPp~--~~I~~~y~~~yh~~l~~~l~~l~-~~l~~~di~~LL~wv~~~Y~~~~~l~~~~l~~~~~~l~plL~~~ 374 (733)
+++..|-|-. |+=.+..-..-...+.+.|.... ..-+++.++.|=+++ --|.. .|. .+|.++ +||..
T Consensus 349 d~il~t~~~~~s~~~ve~lW~~~i~k~v~~L~~~~s~~~t~~~ll~lKd~i-~L~~~--tl~--~yg~~V---~~l~~-- 418 (800)
T KOG2176|consen 349 DHILRTTGGFLSYNEVEELWDTAISKLVATLSYQSSRCQTPNHLLKLKDLI-VLLGA--TLE--NYGFNV---EPLYD-- 418 (800)
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHH-HHHHH--HHH--HcCCch---hHHHH--
Confidence 6666665522 21111111222333333333333 444566666655554 21221 121 223433 34433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------------------CCCCCCCCCCccccchhHHHHHHHHHH
Q psy12595 375 VIKELENKYFKYIQENYVDWMRKTLETEKEDWKS-------------------CSPPDSDGEGHYHTAAPVIIFQMIDQN 435 (733)
Q Consensus 375 ~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~w~~-------------------~~~P~~d~dg~~~t~~~~dlfqmi~~q 435 (733)
.+..+.+.|.+..-.+-..-+..+++.+.-.|.- +.+|-..+.-..+|+..-++...++..
T Consensus 419 ~l~~~rdky~e~LL~~~~~~f~e~l~~D~f~pm~V~~e~~Ye~~v~~fp~~~~e~~~~~Fp~~~pFS~mvP~~c~~~k~f 498 (800)
T KOG2176|consen 419 LLVEIRDKYHEVLLRKWRKIFREALEKDDFMPMVVKKEEEYEKNVLSFPFQNEELEPLPFPKTFPFSPMVPDVCTQAKKF 498 (800)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhhhhccccccccccCCCCcccCCCCcCCchHHHHHHHH
Confidence 5678899999999999999999999888655541 123433555677888888888888888
Q ss_pred HHHHHh-hhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHhcChHHHHH---HHHHHHh
Q psy12595 436 LQLTKD-ISQELTE--RILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVYFTHFMIAMLNNCLKFVE---LAHQMKQ 509 (733)
Q Consensus 436 l~~a~~-~~~~l~~--~v~~~~~~~l~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~liA~~N~~~~~~~---~~~~l~~ 509 (733)
+.-+.. .+..... .++......-..+ -.++.+..-. -+.+..-+.-++=++=|-..+.. +.....-
T Consensus 499 i~~~v~fls~~~l~~~e~~~~~~~~~~l~--l~rs~vl~~~------~~~~~~~lsq~~QI~~n~~~fe~a~~~f~~~a~ 570 (800)
T KOG2176|consen 499 IYACVKFLSDLVLLETEVLNKIRKDTNLL--LTRSLVLSLT------SSLPSLNLSQAMQIAANLDYFEIAADFFLEFAC 570 (800)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHH------HhcccccHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 775532 3221111 1111000000000 0011110000 01111112222222223333322 1111111
Q ss_pred hhhhccccccccccchHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCCc------hhHHHHHHHHHH-
Q psy12595 510 TFWKRSELHRSDASNKFEAL--LKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTST------VSIQTICMTLDD- 580 (733)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~------~~v~~I~~t~~d- 580 (733)
+... +. . .+.+.. ...|..-.+.|-.-+...|-..++..+.-. .-.|.+.+ .++..++.-++-
T Consensus 571 ~~~~--~~---~--~~~e~~~~s~~l~~sr~~Ae~~l~~~i~~Kid~f~~l~-~~dW~t~e~pq~~~~~i~e~~~yLet~ 642 (800)
T KOG2176|consen 571 HLNG--IP---N--RDAERPSSSTKLLASRKLAETELIELIKLKIDDFLELI-EYDWTTTEVPQGPSEYINEMLIYLETM 642 (800)
T ss_pred HccC--Cc---c--ccccccccchhhhhhhhhHHHHHHHHHhhhhHHHHHHh-hccccccccCCCccHHHHHHHHHHHHH
Confidence 1111 00 0 000100 122222223333334333444444444333 67887654 355444544443
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCC---Cch
Q psy12595 581 YFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSK---YTTNID---APL 654 (733)
Q Consensus 581 y~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~---~~s~~~---~~~ 654 (733)
|..-+.+|+....+.+|....+++....+.-|.--. .|..+ ..|+..+..|+..+..|-.+ .+..++ ..+
T Consensus 643 ~~s~~q~LP~~v~~~v~~~~~~his~~iv~llldd~--ik~is--~~Ai~~fnlDv~~lEsfa~~~p~~~~~~~~~~~~f 718 (800)
T KOG2176|consen 643 FSSALQILPYKVAQLVCLRELDHISTSIVGLLLDDS--IKQIS--MGAITNFNLDVNYLESFAASPPVPPNQEGVLAKAF 718 (800)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHhCch--HHHHH--HHHHHccchhHHHHHHhccCCCCCCcccchhHHHH
Confidence 333346788888999999999999999888886432 23333 67999999999999888776 111222 444
Q ss_pred hHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHh
Q psy12595 655 DCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLT 696 (733)
Q Consensus 655 ~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~ 696 (733)
--+..+++++...+++.....+..... |--+....+..+|.
T Consensus 719 ielrQlinLL~~~~~e~y~~~~~r~rs-Y~rl~~~~a~t~lE 759 (800)
T KOG2176|consen 719 IELRQLINLLLLSDWETYLNDYGRERS-YNRLQPAKAATLLE 759 (800)
T ss_pred HHHHHHHHHHHhcCHHHhhCchhhhhh-hhccCHHHHHHHHH
Confidence 445567888887777755555555444 65555555555544
No 11
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=97.89 E-value=0.0035 Score=72.52 Aligned_cols=265 Identities=14% Similarity=0.190 Sum_probs=147.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHhhhhcC-----chHHHHHHHHHHhhhhhhhhHHHHhhcCCCCCCCCchhHHHHHHHHH
Q psy12595 181 SDVEKVSQLLEKQIKLILSRTLLTVRKE-----PTVIVTALRIIEREEHLDQMCMQKKQQSNYMPIGRPKQWRKMAMAVL 255 (733)
Q Consensus 181 ~~v~~l~~~l~~~l~~~~~~~l~~~~~~-----~~~lv~a~rIie~EE~~D~~~~~~~~~~~~~~~~~pk~~r~~~~~~l 255 (733)
+-+..+..+.++++... ...+.-...+ -.+.+.+.+|+-.+........ +..-=+.++-.-|
T Consensus 323 s~L~si~~W~ekrL~dY-H~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~~~~------------~~~~~~~~ie~YI 389 (677)
T PF05664_consen 323 SVLSSIQGWAEKRLLDY-HDHFSEGNIGVMEGLLSLAVSAAKILGEDVSREYRRK------------RSKVARSRIESYI 389 (677)
T ss_pred HHHHHHHHHHHHHHHHH-HhhccCcchHHHHHHHHHHHHHHHHHhhchhHHHHhh------------hccchHHHHHHHH
Confidence 55677777888887765 4444311110 1233344444433322211100 0001233444446
Q ss_pred HHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccch-HHHHHHHHHHHHHHHHHHHH---h
Q psy12595 256 EESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNI-VTSFMRMYHDCLSIHLEEMA---T 331 (733)
Q Consensus 256 ~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~I-~~~y~~~yh~~l~~~l~~l~---~ 331 (733)
+.|++.-|.............-....|..+.+-+.+-...-.+.+.|.+...... ...-+...|.+....|+.++ .
T Consensus 390 rsSi~~Af~~~~~~~~~~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~~ 469 (677)
T PF05664_consen 390 RSSIKAAFARMASSVDSRSDSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNELKQFLSGVT 469 (677)
T ss_pred HHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 6667666655321110011111112343444444433334455567777553333 33444679999999999998 3
Q ss_pred cCCccchhhhhccccccCCCCCCCC----CCccccC--CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12595 332 SLEGNEIVSMLTWAVNTYPGPDMMS----NPELGAN--ATPLGPVLKEEVIKELENKYFKYIQENYVDWMRKTLETEKED 405 (733)
Q Consensus 332 ~l~~~di~~LL~wv~~~Y~~~~~l~----~~~l~~~--~~~l~plL~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~ 405 (733)
.|. .|.+.+|.-..+ ... .++. +-+-+.+ ...+.|.=-++.+..|+..+++...+++.+|++++++.| .
T Consensus 470 ~LT-~d~v~VL~aA~~-LEk-~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE--~ 544 (677)
T PF05664_consen 470 HLT-PDVVEVLQAADK-LEK-ALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAIKQE--K 544 (677)
T ss_pred cCC-HHHHHHHHHHHH-HHH-HHHHHHHhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c
Confidence 433 344455544322 111 0110 0011111 113456555778899999999999999999999999888 5
Q ss_pred hccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 406 WKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDAL 469 (733)
Q Consensus 406 w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~~l~~~v~~~~~~~l~~f~~~~~~~l 469 (733)
|. |.. +...++++.||||+|++|.++.--.+.-..-..++..+...+...++.|-..+
T Consensus 545 W~----P~S--~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v 602 (677)
T PF05664_consen 545 WN----PRS--KEERHSPSVVEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKV 602 (677)
T ss_pred CC----cCC--CCCCCcchHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 85 331 23457999999999999999977666544444556666777777777777655
No 12
>KOG2218|consensus
Probab=97.20 E-value=0.68 Score=53.13 Aligned_cols=140 Identities=20% Similarity=0.248 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCCch-----------hHHHHHHHHHHHHHhhh-hhhhhh
Q psy12595 525 KFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTSTV-----------SIQTICMTLDDYFQDYC-HLVGKN 592 (733)
Q Consensus 525 ~~~~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~~-----------~v~~I~~t~~dy~~d~~-~l~~~~ 592 (733)
.++++.+-+.++......-++-.++..+++..+..+..+|..-++ .+--.+.++++++.++. .|.|.-
T Consensus 547 ~F~~~~~~leel~~~~~~~~iv~~l~~~~~~~r~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~~ 626 (737)
T KOG2218|consen 547 VFEEVSNFLEELMSTWMLKLIVHLLQNLKDLLRNYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPLD 626 (737)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHhhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChhh
Confidence 477777777777788888888888888899999999988987542 22334566777777775 479999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHhccCCC
Q psy12595 593 LEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDS 669 (733)
Q Consensus 593 ~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~~~~~~l~~l~eli~~~d~ 669 (733)
|..+...+...+.+.|..-.+-+.++++ ..++.+..-|+..|...|+.|.-.....|+-+..+..++++..+
T Consensus 627 fs~~~~~l~~~idv~~~~e~il~~~~f~-----~~~~~~f~~Da~~L~~~fs~yc~rp~~~f~~l~e~~~vL~l~e~ 698 (737)
T KOG2218|consen 627 FSAIWRNLQENIDVYVFEEIILKNHKFE-----SSGLFQFVHDAKRLLEVFSEYCVRPLLKFKSLRELVCVLKLEEG 698 (737)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhhcC-----chHHHHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhccc
Confidence 9999999999999998888877777877 67999999999999999999976555677777777777776655
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=97.17 E-value=0.056 Score=57.04 Aligned_cols=175 Identities=13% Similarity=0.184 Sum_probs=129.8
Q ss_pred HHHHHHHhhCCC-cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy12595 15 VSKQLLTLLQRS-DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP 93 (733)
Q Consensus 15 a~~~i~~ll~~p-~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~ 93 (733)
++++.-+.++.. .+++-++....++......|+.+|...+..+-++--.|+..+++-+.++...-..+...++..+...
T Consensus 15 ~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~ 94 (291)
T PF10475_consen 15 PVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSAD 94 (291)
T ss_pred chHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556655 5677888889999999999999999999999999999999998888888887777777777777666
Q ss_pred hhh-hchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccCCChhh
Q psy12595 94 PLG-LKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQSMAD 172 (733)
Q Consensus 94 ~~v-~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~ 172 (733)
..+ ..--.|-.....+.|+..+.+.|+.|..+......++.++++|+...|..-+.+.+.. +.+.++
T Consensus 95 ~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~----l~~l~~-------- 162 (291)
T PF10475_consen 95 ENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQL----LEELKG-------- 162 (291)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----HHhccc--------
Confidence 554 3234455688999999999999999999999999999999999998888888766543 333222
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q psy12595 173 KLLLQDYFSDVEKVSQLLEKQIKLILSRT 201 (733)
Q Consensus 173 ~~~l~~~f~~v~~l~~~l~~~l~~~~~~~ 201 (733)
..-+...-..+..........+-..+...
T Consensus 163 ~~c~~~L~~~L~e~~~~i~~~ld~~l~~~ 191 (291)
T PF10475_consen 163 YSCVRHLSSQLQETLELIEEQLDSDLSKV 191 (291)
T ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333555555555555555544443
No 14
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=96.81 E-value=0.2 Score=50.81 Aligned_cols=173 Identities=8% Similarity=0.110 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCCc------hhHHHHHHHHHHHHHhh----h--hhhhhhHHH
Q psy12595 528 ALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTST------VSIQTICMTLDDYFQDY----C--HLVGKNLEF 595 (733)
Q Consensus 528 ~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~------~~v~~I~~t~~dy~~d~----~--~l~~~~~~~ 595 (733)
...+...++...++...+..++ +++.....+...+|--.+ .+|+.++.-+..|..-+ + .++++....
T Consensus 46 ~tv~~v~dLr~~iy~~~a~~~l-~~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~ 124 (234)
T PF10474_consen 46 QTVSAVPDLREPIYKCVASRLL-DLEQILNSIANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNV 124 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3345556677777777777664 788889999999996542 69999999998887766 2 357777777
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHhc---cCCCchh
Q psy12595 596 IILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLK---NEDSEML 672 (733)
Q Consensus 596 l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~~~~~~l~~l~eli~---~~d~~~i 672 (733)
+++.+...+....|..+-+- -||. ..+-..|..|...+..-+..+.+... .+-....-..|+ +.+
T Consensus 125 lw~~~i~~~~~~Lveg~s~v-kKCs-----~eGRalM~lD~q~~~~~le~l~~~~~--~p~~~~Ve~YIKAyYl~e---- 192 (234)
T PF10474_consen 125 LWDRLIFFAFETLVEGYSRV-KKCS-----NEGRALMQLDFQQLQNKLEKLSGIRP--IPNREYVENYIKAYYLPE---- 192 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCC-----hhhHHHHHHHHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHcCCH----
Confidence 77777777766666665432 3676 56788999999999999988865432 122222323333 222
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12595 673 SLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQ 714 (733)
Q Consensus 673 ~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l~ 714 (733)
.++...++.+|.-|..|+.+|+.+=+-.+|.+++.+++.++
T Consensus 193 -~e~~~W~~~h~eYs~~ql~~Lv~~~~~~~kk~r~~ll~~ie 233 (234)
T PF10474_consen 193 -EELEEWIRTHTEYSKKQLVGLVNCAAASKKKTRQRLLNAIE 233 (234)
T ss_pred -HHHHHHHHhCcccCHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 24677778888899999999999877668999999888764
No 15
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.80 E-value=0.14 Score=54.34 Aligned_cols=163 Identities=16% Similarity=0.229 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCCc------hhHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHH
Q psy12595 528 ALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTST------VSIQTICMTLDDYFQD-YCHLVGKNLEFIILEA 600 (733)
Q Consensus 528 ~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~------~~v~~I~~t~~dy~~d-~~~l~~~~~~~l~~~~ 600 (733)
...+.|.+..+.|-..+.+.+-..+...+ .+-.-.|.... .++..++.-++.-+.- +..|++...+.++-..
T Consensus 133 ~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l-ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a 211 (311)
T PF04091_consen 133 KATKMFKDARKAAEKRIFELVNSKIDEFL-ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSA 211 (311)
T ss_dssp -----S---TTHHHHHHHHHHHHHHHHHH-TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34577888888899999988888888888 77777898753 4788888888888855 5789999999999999
Q ss_pred HHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC------CchhHHHHHHHHhccCCCchhHH
Q psy12595 601 EELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID------APLDCILALSEVLKNEDSEMLSL 674 (733)
Q Consensus 601 ~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~------~~~~~l~~l~eli~~~d~~~i~~ 674 (733)
..++....+.-|+....+ .++ ..|..++..|+..+..|....+..+. ..+.-|..+.+++...|++.. .
T Consensus 212 ~~his~~l~~~Ll~~~vk--~in--~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y-~ 286 (311)
T PF04091_consen 212 CDHISESLLDLLLSDDVK--RIN--MNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEY-L 286 (311)
T ss_dssp HHHHHHHHHHHHT-------------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhcCCccc--ccC--HHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHH-h
Confidence 999999999988765444 333 78999999999999999998843221 677777778888886666766 6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHh
Q psy12595 675 DLHTLLNKYPDISDDHISRLLT 696 (733)
Q Consensus 675 ~~~~l~~~ypD~~~~~v~aiL~ 696 (733)
....-.++|+-+..+.+..||.
T Consensus 287 d~~~r~~kY~~v~p~~~~~lLe 308 (311)
T PF04091_consen 287 DPGIRERKYSRVKPEKAIKLLE 308 (311)
T ss_dssp ----------------------
T ss_pred CccccccccCCCCHHHHHHHHH
Confidence 6666678999999888888875
No 16
>KOG2286|consensus
Probab=96.68 E-value=0.085 Score=60.66 Aligned_cols=121 Identities=14% Similarity=0.130 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHhccCCCc
Q psy12595 591 KNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSE 670 (733)
Q Consensus 591 ~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~~~~~~l~~l~eli~~~d~~ 670 (733)
.....-..+.+..++.+|+.........|.+.+ +..+...+..+.+.+.++|..+.+...|...++..++.+...-..+
T Consensus 232 ~~w~~~~~e~~r~~i~EdL~~~~~~l~~cfpp~-~~if~~~l~~Yh~~ls~ll~dl~s~~l~~~eil~llawV~~~~~~~ 310 (667)
T KOG2286|consen 232 KEWQVRLLEVLRFVIREDLRVAKRVLVPCFPPH-YNIFSAYLELYHQALSDLLRDLASEALELREILQLLAWVRNEYYTP 310 (667)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcCh
Confidence 455555666777799999999987777788754 7889999999999999999999998889999999999988435677
Q ss_pred hhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12595 671 MLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLY 712 (733)
Q Consensus 671 ~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~ 712 (733)
.++.++....+.+|+++.+|+.+|++.+.-...+..+..+..
T Consensus 311 ~l~~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~ 352 (667)
T KOG2286|consen 311 LLQLNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMN 352 (667)
T ss_pred hhhccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999986555555555544
No 17
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=96.42 E-value=2.8 Score=48.97 Aligned_cols=170 Identities=14% Similarity=0.185 Sum_probs=118.3
Q ss_pred cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh---hhhchHHHH
Q psy12595 27 DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPP---LGLKLSDLR 103 (733)
Q Consensus 27 ~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~---~v~~~~~ik 103 (733)
-+-+.+.....++.+++..+.+++.+.+.+........+....+....+..+...|.++-+..-+.+. +.....++.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 34456777788888999999999999999999988888887777777777777777666554222222 123445555
Q ss_pred HHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHhcH
Q psy12595 104 AQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSDV 183 (733)
Q Consensus 104 ~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~~~l~~~f~~v 183 (733)
.+....+....+.+.+++|..+...+++++..+.+++++.|-..|-+++.. +..+.. ....+...+...-.++
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~----L~~l~~---~~~~~~~i~~~Lk~e~ 159 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSL----LDDLKS---SKFEELKILKLLKDEY 159 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----HHhcCc---CcccccHHHHHHHHHH
Confidence 566666666677888999999999999999999999999999999888654 332211 1111222333333566
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12595 184 EKVSQLLEKQIKLILSRTLL 203 (733)
Q Consensus 184 ~~l~~~l~~~l~~~~~~~l~ 203 (733)
..+...+..++.....+.+.
T Consensus 160 ~~lr~~L~~~L~~~w~~lv~ 179 (593)
T PF06248_consen 160 SELRENLQYQLSEEWERLVQ 179 (593)
T ss_pred HHHHHHHHHHHHHHHHhhee
Confidence 66667777777666666654
No 18
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.42 E-value=0.075 Score=49.58 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh-chHHHHHHHH--
Q psy12595 31 KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGL-KLSDLRAQNN-- 107 (733)
Q Consensus 31 kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~-~~~~ik~l~~-- 107 (733)
..+.-..++.+-+..++..|+..|..+-++...++..-+.....|++-++++..+++.+.++...+. +-+.++++..
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566677888888999999999999999999999999999999999999999999998888887773 3345555554
Q ss_pred -HHHhHHHHHHhhhhhcCCchHHHH
Q psy12595 108 -RHVQYVTAIENLTHVFAVPDSVER 131 (733)
Q Consensus 108 -~~~nl~~~~~~l~~l~~~~~~v~~ 131 (733)
.++....++..++.+..+|+.++.
T Consensus 117 ~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 117 QEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 455555555556677888887765
No 19
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=94.14 E-value=15 Score=43.06 Aligned_cols=111 Identities=16% Similarity=0.233 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-hcCCccchhhhhccccccCCCCCCCCCCccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy12595 309 NIVTSFMRMYHDCLSIHLEEMA-TSLEGNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVLKEEVIKELENKYFKYI 387 (733)
Q Consensus 309 ~I~~~y~~~yh~~l~~~l~~l~-~~l~~~di~~LL~wv~~~Y~~~~~l~~~~l~~~~~~l~plL~~~~~~~L~~~Y~~~~ 387 (733)
++-+..+..-|+-+..++.+++ .+.++.-++.|.+=+ ..|.. ++. +-+|-+. +| -.++.+|.+.-.+..
T Consensus 303 ~lld~i~~~l~rplk~RvEQvi~se~~~i~~yki~~LL-~fY~~--~~~-k~i~~~s----~L--~~tl~~L~~~a~~~f 372 (618)
T PF06419_consen 303 ELLDRILEGLCRPLKIRVEQVISSEEDPITLYKIANLL-SFYQM--TFS-KLIGEDS----SL--IETLKELQDLAQKKF 372 (618)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcCCCccHHHHHHHHH-HHHHH--HHH-HHcCCCc----hH--HHHHHHHHHHHHHHH
Confidence 3455566777888999999999 888888888877775 77875 232 1122211 22 247888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccchhHHHHHHHHHHHHH
Q psy12595 388 QENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQL 438 (733)
Q Consensus 388 ~~~l~ew~~~~l~~e~~~w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~ 438 (733)
...+..++.++.... ..+|..| ....+.-.+....+.+-++.
T Consensus 373 ~~~l~~~~~~l~~~~------~~~~~~D---L~PP~~l~d~l~~L~~il~~ 414 (618)
T PF06419_consen 373 FSSLRDHVAKLLRSA------PEPPPAD---LSPPEWLIDFLSLLREILDV 414 (618)
T ss_pred HHHHHHHHHHHHhhC------CCCCCCC---CCCCHHHHHHHHHHHHHHHH
Confidence 888999998887651 1223322 55566667777777777776
No 20
>KOG4182|consensus
Probab=93.20 E-value=15 Score=40.10 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=98.3
Q ss_pred hHHHHHHHhhC--CCcc----hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy12595 14 NVSKQLLTLLQ--RSDQ----LEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVI----SGIQELKTVLEDMQTIKENIH 83 (733)
Q Consensus 14 ~a~~~i~~ll~--~p~~----L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~----~gl~~L~~a~~~v~~i~~~l~ 83 (733)
+|.+|||.-.+ ||++ -+..+.+.+.+..|..-.-..+..+++.|.-++- ++-.....-+.++-.+++++.
T Consensus 12 da~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma 91 (828)
T KOG4182|consen 12 DAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMA 91 (828)
T ss_pred CHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHH
Confidence 56778888776 4443 3567777777777777666777777777766542 222333344677778888888
Q ss_pred HHHHHhccchhhhh-chHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHHHHHHH
Q psy12595 84 EMKNSLQVLPPLGL-KLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKS 154 (733)
Q Consensus 84 ~i~~~~~~~~~~v~-~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~~LE~~ 154 (733)
.|.......+.-.. -...+.+++..+..+..+-+.|..--.+..-..++++-...|.|--+-..|..|+..
T Consensus 92 ~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkc 163 (828)
T KOG4182|consen 92 AILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKC 163 (828)
T ss_pred HHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Confidence 87765554444333 336677788888888888888877666666677888888888888888888877654
No 21
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=92.79 E-value=2.6 Score=38.72 Aligned_cols=108 Identities=10% Similarity=0.148 Sum_probs=84.7
Q ss_pred HHHHHHHhhC----CCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12595 15 VSKQLLTLLQ----RSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQ 90 (733)
Q Consensus 15 a~~~i~~ll~----~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~ 90 (733)
|..+.+.++. ..++=..+..-.+++..-+..++.+|.+.|.+.-+..=.-...+..+...+..++..+..+..-++
T Consensus 10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~ 89 (132)
T PF10392_consen 10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYE 89 (132)
T ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666 222223667778888889999999999999999988888888888888888999999988888777
Q ss_pred cchhhh-hchHHHHHHHHHHHhHHHHHHhhhhh
Q psy12595 91 VLPPLG-LKLSDLRAQNNRHVQYVTAIENLTHV 122 (733)
Q Consensus 91 ~~~~~v-~~~~~ik~l~~~~~nl~~~~~~l~~l 122 (733)
.-..-| +.|..+.....+-+|+..|.+.|.+.
T Consensus 90 RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~ 122 (132)
T PF10392_consen 90 RLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSV 122 (132)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766555 78888888888888888888777543
No 22
>KOG3691|consensus
Probab=92.22 E-value=15 Score=43.42 Aligned_cols=123 Identities=19% Similarity=0.269 Sum_probs=90.9
Q ss_pred cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh-chHHHHHH
Q psy12595 27 DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGL-KLSDLRAQ 105 (733)
Q Consensus 27 ~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~-~~~~ik~l 105 (733)
++-+-++--+.++...=.+-++.|...|..+-+...+|+..-.++...|+..++++..++.....+..++. +-.+++++
T Consensus 43 e~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqkl 122 (982)
T KOG3691|consen 43 EDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKL 122 (982)
T ss_pred CcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33333333344443333444899999999999999999999999999999999999999999998888885 66677887
Q ss_pred HHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHH
Q psy12595 106 NNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLM 149 (733)
Q Consensus 106 ~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~ 149 (733)
-..-.+...+++.|+.|..+..--+.++.++..++.++|-.-|.
T Consensus 123 w~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~ 166 (982)
T KOG3691|consen 123 WAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLT 166 (982)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666655444443455667788887777777766
No 23
>PF15469 Sec5: Exocyst complex component Sec5
Probab=90.39 E-value=12 Score=36.28 Aligned_cols=138 Identities=16% Similarity=0.288 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhccch----hhhhchHHHHHHHHHHHhHHHHHH
Q psy12595 48 TTLKTAMQSQLDGVISGIQELKTVLEDMQTIKEN------IHEMKNSLQVLP----PLGLKLSDLRAQNNRHVQYVTAIE 117 (733)
Q Consensus 48 ~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~------l~~i~~~~~~~~----~~v~~~~~ik~l~~~~~nl~~~~~ 117 (733)
.+|++.|++..+..-.+...|.....++...... +..+.+...++. .+.+..-+-++-....++...+++
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3567777777777777777666666666443332 333333333222 222222222223333444555677
Q ss_pred hhhhhcCCchHHHHHHhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHhcHHHHHHHHHHHH
Q psy12595 118 NLTHVFAVPDSVERTKQWISEGK---LLHAHQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSDVEKVSQLLEKQI 194 (733)
Q Consensus 118 ~l~~l~~~~~~v~~l~~ll~~~~---LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~~~l~~~f~~v~~l~~~l~~~l 194 (733)
..++||.+|.. +++.|..++ +..-|.+...+ ++- ...+...+.+.+.+|+.+...|...+
T Consensus 82 r~~flF~LP~~---L~~~i~~~dy~~~i~dY~kak~l--------~~~------~~~~~~vf~~v~~eve~ii~~~r~~l 144 (182)
T PF15469_consen 82 RNRFLFNLPSN---LRECIKKGDYDQAINDYKKAKSL--------FEK------YKQQVPVFQKVWSEVEKIIEEFREKL 144 (182)
T ss_pred HHHHHHHhHHH---HHHHHHcCcHHHHHHHHHHHHHH--------HHH------hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999955 555577763 34444333311 111 10034688899999999999999999
Q ss_pred HHHHHHHH
Q psy12595 195 KLILSRTL 202 (733)
Q Consensus 195 ~~~~~~~l 202 (733)
|.-+.+.-
T Consensus 145 ~~~L~~~~ 152 (182)
T PF15469_consen 145 WEKLLSPP 152 (182)
T ss_pred HHHHhCCC
Confidence 98777655
No 24
>KOG1011|consensus
Probab=87.99 E-value=54 Score=37.35 Aligned_cols=129 Identities=18% Similarity=0.308 Sum_probs=76.5
Q ss_pred cCccccccchHHHHHHHHHHHHHHHHHH----HH-----hcCCccchhhhhccccccCCCCCCCCCCccccCCCCCCCCC
Q psy12595 301 GPCFPPHYNIVTSFMRMYHDCLSIHLEE----MA-----TSLEGNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVL 371 (733)
Q Consensus 301 ~~~fPp~~~I~~~y~~~yh~~l~~~l~~----l~-----~~l~~~di~~LL~wv~~~Y~~~~~l~~~~l~~~~~~l~plL 371 (733)
.+-||.+.++-+.-++..-..+.+.++- -. ...+--.+..=..|..+.|-. ++ |.+ .+++ |-.
T Consensus 667 lnqfpqelnvgk~saevmw~lfaqdmk~aleeh~k~~~cksadymnl~fkvk~ly~eyv~-dl---p~~---k~~v-pey 738 (1283)
T KOG1011|consen 667 LNQFPQELNVGKLSAEVMWSLFAQDMKYALEEHAKKKLCKSADYMNLHFKVKWLYNEYVA-DL---PTY---KSSV-PEY 738 (1283)
T ss_pred hhhChhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccCcchhheeeehhhhHHHHHh-hc---hhh---hccC-CCc
Confidence 3458888887766555433333333332 22 222333444445677555543 11 212 1122 111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhh
Q psy12595 372 KEEVIKELENKYFKYIQENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDIS 443 (733)
Q Consensus 372 ~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~ 443 (733)
| --++++.-+++.--..--.+.+.++++.++++ .=|. ..+...++-+.+|+|.-+|+...+...+.
T Consensus 739 p-awf~pfv~qwldenee~s~dflrga~e~dkkd----gf~q-tseha~fs~svvdvftqlnqsfeiikkle 804 (1283)
T KOG1011|consen 739 P-AWFEPFVMQWLDENEEVSMDFLRGALERDKKD----GFQQ-TSEHALFSCSVVDVFTQLNQSFEIIKKLE 804 (1283)
T ss_pred h-HHHHHHHHHHhccchHHHHHHHHhHhhccccc----Cccc-cchhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 2 24677888888777777788888988877653 2333 44555678899999999999998886654
No 25
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=86.35 E-value=10 Score=31.77 Aligned_cols=72 Identities=14% Similarity=0.330 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 15 VSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKN 87 (733)
Q Consensus 15 a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~ 87 (733)
|-.++.++|++.. +..|..+.+++..++...+..|+..|-..-...-.+-..+..-..++.+++..+.++..
T Consensus 8 ~~~~~~~~l~~~s-~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 8 VDEYFKDLLKNSS-IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777887665 78999999999999999999999997555444444444444444444444444444443
No 26
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=78.96 E-value=99 Score=33.31 Aligned_cols=55 Identities=11% Similarity=0.216 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 28 QLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENI 82 (733)
Q Consensus 28 ~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l 82 (733)
+|+.+..--.++..++++++.+|.+...+.-...-..-+.+......+..+.+.+
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l 62 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSL 62 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566677777777777777766655554444444444444444444443
No 27
>KOG2148|consensus
Probab=78.02 E-value=1e+02 Score=35.54 Aligned_cols=60 Identities=13% Similarity=0.281 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q psy12595 33 NQYKQRIIRKKISVET-TLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP 93 (733)
Q Consensus 33 ~~~~~~~~~~~~~vd~-~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~ 93 (733)
+.+..++.|+..++|+ .+.+.+.| =..|..-++.|..|.+.|..+.+.+...+.+++...
T Consensus 192 eaFaE~L~reLq~LdgANiqsilaS-E~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvr 252 (867)
T KOG2148|consen 192 EAFAERLKRELQALDAANIQSILAS-EPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVR 252 (867)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888889887 34444433 234667778888888888888888777666555443
No 28
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=77.27 E-value=15 Score=32.10 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CchhHHHHHHHHhccCCCchhHH
Q psy12595 597 ILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID--APLDCILALSEVLKNEDSEMLSL 674 (733)
Q Consensus 597 ~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~--~~~~~l~~l~eli~~~d~~~i~~ 674 (733)
+..+...+-..-++.|+.++..|. -.-|-+|+.....+.+...+.+-... ..+..+.-.+.++.+ +.+.+.
T Consensus 3 f~qlf~~i~~~~fN~ll~~~~~~~-----~~~g~qi~~nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~-~k~~~~- 75 (105)
T PF01843_consen 3 FSQLFHYINASLFNSLLLRRKYCS-----WSKGVQIRYNLSELEDWARSHGLEEAAEEHLQPLSQAANLLQL-RKSTLQ- 75 (105)
T ss_dssp HHHHHHHHHHHHHHHHHCHSS-B------HHHHHHHHHHHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC---SSHH-
T ss_pred HHHHHHHHHHHHHHHHHCCCCccc-----cccHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-cCcchh-
Confidence 344445555556777886666666 45788999999999999887765432 666777777888886 666555
Q ss_pred HHHHHhhhCCCCCHHHHHHHHhh
Q psy12595 675 DLHTLLNKYPDISDDHISRLLTL 697 (733)
Q Consensus 675 ~~~~l~~~ypD~~~~~v~aiL~~ 697 (733)
.+..+...+|-++.-.+.+||..
T Consensus 76 d~~~~~~~c~~Ln~~Qi~~iL~~ 98 (105)
T PF01843_consen 76 DWDSLRETCPSLNPAQIRKILSN 98 (105)
T ss_dssp HHHHHCCCTTTS-HHHHHHHHCC
T ss_pred HHHHHHHHcccCCHHHHHHHHHh
Confidence 88999999999999999999863
No 29
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=77.15 E-value=23 Score=37.96 Aligned_cols=79 Identities=10% Similarity=0.135 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhH-HHHHHHHH
Q psy12595 374 EVIKELENKYFKYIQENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQ-ELTERILL 452 (733)
Q Consensus 374 ~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~-~l~~~v~~ 452 (733)
..+.+|+..|+....-=+.+-+.++++.|. +|..+.++.+.|+..-|+|=+++.++..|-.+++ +....++.
T Consensus 233 ~kvqell~~Y~~le~~y~~~Sv~KAi~lde-------~~~~~~~~~~~SS~VDDvffil~k~l~RalsT~~~~~v~a~in 305 (324)
T smart00762 233 TKIQELLGTYVPLETYYFRRSVEKAIKLDE-------LPSDEDKDPLTSSMVDDVFYLLRKVLRRALSTGNIASLTAFIN 305 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCcccCCCCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456779999999999999999999986653 2322556788999999999999999999866655 66777777
Q ss_pred HHHHHHH
Q psy12595 453 LSVEHVT 459 (733)
Q Consensus 453 ~~~~~l~ 459 (733)
.+...|.
T Consensus 306 ~~~~~L~ 312 (324)
T smart00762 306 ELASVLQ 312 (324)
T ss_pred HHHHHHH
Confidence 6666653
No 30
>PF14923 CCDC142: Coiled-coil protein 142
Probab=76.82 E-value=57 Score=36.28 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=60.8
Q ss_pred hhHHHHHHHHH-HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12595 569 VSIQTICMTLD-DYFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSK 645 (733)
Q Consensus 569 ~~v~~I~~t~~-dy~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~ 645 (733)
+|+...+.++= .-++-.+++.+..--..+..+...+....+..++++|+||. ..+|-|++.|...+.+...+
T Consensus 276 ~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS-----~~GAlQL~~DF~~Vr~wl~~ 348 (450)
T PF14923_consen 276 EYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFS-----LQGALQLRQDFGYVRDWLES 348 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceee-----HHHHHHHHHHHHHHHHHHHh
Confidence 57777777663 33444567888888888889999999999999999999998 78999999999999999887
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=76.30 E-value=1e+02 Score=35.88 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=78.2
Q ss_pred HHHHHHhhCCCcchhhHHHHHHHHH----HhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q psy12595 16 SKQLLTLLQRSDQLEKVNQYKQRII----RKKISVETTLKTAMQSQLDG---------VISGIQELKTVLEDMQTIKENI 82 (733)
Q Consensus 16 ~~~i~~ll~~p~~L~kl~~~~~~~~----~~~~~vd~~Lk~~v~~ql~~---------~~~gl~~L~~a~~~v~~i~~~l 82 (733)
+.+|..|==..+++.+.+.+++... .....++..|..+ ..++++ +...-..|..+..+++.|.+.+
T Consensus 50 l~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~a-e~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l 128 (569)
T PRK04778 50 LEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEA-EELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEEL 128 (569)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555336777778888887743 3555566665544 223332 2222233444444445555555
Q ss_pred HHHHHHhccchhhh----hchHHHHHHHHHHH-hHHHHHHhhhh-hcCCchHHHHHHhhhhcCchHHHHHHHHHHHH
Q psy12595 83 HEMKNSLQVLPPLG----LKLSDLRAQNNRHV-QYVTAIENLTH-VFAVPDSVERTKQWISEGKLLHAHQSLMDLEK 153 (733)
Q Consensus 83 ~~i~~~~~~~~~~v----~~~~~ik~l~~~~~-nl~~~~~~l~~-l~~~~~~v~~l~~ll~~~~LL~ah~~L~~LE~ 153 (733)
.++.+.-.++...| +.|+.+|+--.+++ .|+.++..|+. |-.+-....+-..+...|+.+.|+..|..++.
T Consensus 129 ~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~ 205 (569)
T PRK04778 129 QELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEE 205 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 55444333333333 46666655444443 45666666643 55566667777788888999999999987754
No 32
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.04 E-value=36 Score=30.84 Aligned_cols=70 Identities=10% Similarity=0.270 Sum_probs=37.3
Q ss_pred HhHHHHHHHhhCCCcchh-hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12595 13 QNVSKQLLTLLQRSDQLE-KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQV 91 (733)
Q Consensus 13 ~~a~~~i~~ll~~p~~L~-kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~ 91 (733)
.+|+.-|+.-| +++. .|..-|+.+++++..++.+|-... +.-...+++|.++++.+..|+...+.
T Consensus 42 ~~A~~~v~kql---~~vs~~l~~tKkhLsqRId~vd~klDe~~-----------ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 42 SDAVASVSKQL---EQVSESLSSTKKHLSQRIDRVDDKLDEQK-----------EISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444333 4443 777778888888888777765542 22333444555555555555544443
Q ss_pred chhhh
Q psy12595 92 LPPLG 96 (733)
Q Consensus 92 ~~~~v 96 (733)
...+|
T Consensus 108 v~~~V 112 (126)
T PF07889_consen 108 VQQMV 112 (126)
T ss_pred HHHHH
Confidence 33333
No 33
>PLN02939 transferase, transferring glycosyl groups
Probab=72.47 E-value=1.3e+02 Score=37.09 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=30.4
Q ss_pred HHHHhHHHHHHHhhCCCcchh-hHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy12595 10 EAKQNVSKQLLTLLQRSDQLE-KVNQYKQRIIRKKISVETTLKTAMQSQ 57 (733)
Q Consensus 10 ~a~~~a~~~i~~ll~~p~~L~-kl~~~~~~~~~~~~~vd~~Lk~~v~~q 57 (733)
+|+..|+..+..+|..-+.|. +|.-+.-|+ +..|+++|.++|.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 193 (977)
T PLN02939 149 QARLQALEDLEKILTEKEALQGKINILEMRL----SETDARIKLAAQEK 193 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh----hhhhhhhhhhhhcc
Confidence 577888888888887777776 665555554 56677777666544
No 34
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=72.47 E-value=7.4 Score=27.76 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=22.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHH-hhcCCCC
Q psy12595 675 DLHTLLNKYPDISDDHISRLL-TLRGDLS 702 (733)
Q Consensus 675 ~~~~l~~~ypD~~~~~v~aiL-~~R~dl~ 702 (733)
.+..+...||+++.+.|+++| ...||+.
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve 32 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVE 32 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHH
Confidence 468899999999999999999 5666663
No 35
>KOG3745|consensus
Probab=72.07 E-value=2.1e+02 Score=33.80 Aligned_cols=124 Identities=14% Similarity=0.168 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12595 569 VSIQTICMTLDDYFQDYCH-LVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYT 647 (733)
Q Consensus 569 ~~v~~I~~t~~dy~~d~~~-l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~ 647 (733)
.+...+|.-+.+++.-+.+ +.....+.|..++..++-..-++.+-+ +++. ..+|-.+.-|+.-.+++..+++
T Consensus 625 ~pa~~vVq~L~~~~~~l~~~~dg~nLd~~~~eig~rlf~~l~~hl~~--~~~s-----~~Gal~licDvn~y~~~i~~~~ 697 (763)
T KOG3745|consen 625 EPAIRVVQFLGNHIEQLKGRLDGENLDVFLQEIGTRLFRLLLSHLQQ--FKVS-----TAGALLLICDVNEYRTFIHSLG 697 (763)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHHHHHHHHH--heec-----cccceeeeccHHHHHHHHHHhC
Confidence 3566777777788877754 777888888777777766666666632 2333 5688899999999999999887
Q ss_pred CCCC-CchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCC
Q psy12595 648 TNID-APLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLS 702 (733)
Q Consensus 648 s~~~-~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~ 702 (733)
.+.- ..|+.|..|+.++-. +|+.+....+ -+.-.+++.+.|.-++..|.|+.
T Consensus 698 ~~~vl~~F~tL~~L~nLliV-~pd~l~ev~k--~~~la~f~~~~I~efv~lR~D~r 750 (763)
T KOG3745|consen 698 QPSVLPYFKTLKALANLLIV-KPDNLEEVGK--GKFLANFDREEIHEFVQLRTDFR 750 (763)
T ss_pred cccHHHHHHHHHHHHHHHee-ChhhHHHHhc--hhhhccccHHHHHHHHHHhhhhh
Confidence 6543 888999999999985 5554433222 12235789999999999999975
No 36
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.77 E-value=96 Score=31.87 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q psy12595 67 ELKTVLEDMQTIKENIHEMKNSLQVLPPLG 96 (733)
Q Consensus 67 ~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v 96 (733)
+|++|++.|+++++-+.-++..+.+-...|
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGi 147 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGI 147 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhH
Confidence 345555555555555555444444333344
No 37
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=68.76 E-value=1.2e+02 Score=29.40 Aligned_cols=92 Identities=8% Similarity=0.000 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccchhhhhchHHHHHHH
Q psy12595 31 KVNQYKQRIIRKKISVETTLKTAMQSQLDG-VISGIQELKTVLEDMQTIKENI---HEMKNSLQVLPPLGLKLSDLRAQN 106 (733)
Q Consensus 31 kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~-~~~gl~~L~~a~~~v~~i~~~l---~~i~~~~~~~~~~v~~~~~ik~l~ 106 (733)
-++..+++...+...+|++|+..-....+. ++.|+..+.+=.-.+.++.+.+ ..+...|-.....+..+-.+=+++
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~ 83 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVA 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 467788888999999999999877666654 6777777776666666655554 445556666566666665566688
Q ss_pred HHHHhHHHHHHhhhhh
Q psy12595 107 NRHVQYVTAIENLTHV 122 (733)
Q Consensus 107 ~~~~nl~~~~~~l~~l 122 (733)
....|...+.+.+.+.
T Consensus 84 i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 84 IFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 8888888877766444
No 38
>KOG0517|consensus
Probab=67.39 E-value=3e+02 Score=36.03 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=56.4
Q ss_pred hHHHHHHHhhCC---CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q psy12595 14 NVSKQLLTLLQR---SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVL-EDMQTIKENIHEMKNSL 89 (733)
Q Consensus 14 ~a~~~i~~ll~~---p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~-~~v~~i~~~l~~i~~~~ 89 (733)
.=++....+|.+ |++++.|+-++.|+. +++..+++.. +++.+|....++|-..- -+-.+|...=..++..|
T Consensus 858 lWi~Eke~~L~~m~~~~~~E~vev~q~rFe----~l~~eM~~~~-~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~rW 932 (2473)
T KOG0517|consen 858 LWIKEKEKWLATMSPPDSLEDVEVMQHRFE----KLEQEMNTLA-GRVAEVNDIARQLLEVGHPNSDEILARQDKLNQRW 932 (2473)
T ss_pred HHHHHHHHHHhccCCCCChhHHHHHHHHHH----HHHHHHHhhh-hhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 334455566665 899999999999985 8999999988 99999988888775532 23344555555666777
Q ss_pred ccchhhh
Q psy12595 90 QVLPPLG 96 (733)
Q Consensus 90 ~~~~~~v 96 (733)
++...++
T Consensus 933 ~~l~~l~ 939 (2473)
T KOG0517|consen 933 QQLRELV 939 (2473)
T ss_pred HHHHHHH
Confidence 7777666
No 39
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=66.54 E-value=7.2 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.558 Sum_probs=24.0
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHh-hcCCCC
Q psy12595 674 LDLHTLLNKYPDISDDHISRLLT-LRGDLS 702 (733)
Q Consensus 674 ~~~~~l~~~ypD~~~~~v~aiL~-~R~dl~ 702 (733)
..+..|...||+++.+.|+.+|. ..||+.
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve 33 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVE 33 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHH
Confidence 34688999999999999999999 666553
No 40
>KOG1328|consensus
Probab=66.14 E-value=2.7e+02 Score=32.73 Aligned_cols=254 Identities=14% Similarity=0.188 Sum_probs=126.0
Q ss_pred CCCCCCCccccchhHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccccc
Q psy12595 412 PDSDGEGHYHTAAPVIIFQMIDQNLQLTKDIS-------QELTERILLLSVEHVTEYGKMSKDAL---KELKVEHFKDRS 481 (733)
Q Consensus 412 P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~-------~~l~~~v~~~~~~~l~~f~~~~~~~l---~~~~~~~~~~~~ 481 (733)
|.......=+|++.+|+-..+.+--..=..+. ..+..+.++..+....-|.+....+. ..+.. -
T Consensus 643 ~~~~~~~~RhSSS~~d~~~~l~~i~efW~rl~wpD~~~ai~~~~QL~dvVCea~~~Yt~li~sa~~dtq~~~a------~ 716 (1103)
T KOG1328|consen 643 PISTSSDMRHSSSHIDICHILEQITEFWERLDWPDAGLAIEYTRQLVDVVCEAVTVYTQLIISAEGDTQELQA------F 716 (1103)
T ss_pred ccccchhhccccchhhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh------c
Confidence 33333345578889998887766543222111 13334444444555555554444322 11111 1
Q ss_pred ccchhhHHHHHHhcChHHHHHHHHHHHhhhhhcccccccc--ccchHHHH-HHHHHHHHHHHHHH---HHHHHHhhhHHH
Q psy12595 482 KMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSD--ASNKFEAL-LKVFEELRNDSAQY---LLEEAFLDLLPH 555 (733)
Q Consensus 482 ~~~~~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~~~~~---L~~~i~~dl~p~ 555 (733)
.|....+-+|+.+||++.-+.....-..-...|.....++ .....++. .+..+++-+.|.+. |...+..+++
T Consensus 717 ~p~~~s~~lCv~iNNvE~VRrsl~~~~k~~~~p~~~~~~~~~l~~~~~n~les~~~~~~~e~~ri~~~Lt~~m~~~~~-- 794 (1103)
T KOG1328|consen 717 IPSQLSHLLCVAINNVEQVRRSLNITEKLHMDPRSRLNGNHMLKSEIENRLESCESNICSEIDRIVGLLTERMLPQMK-- 794 (1103)
T ss_pred ChHHHHHHHHHHHccHHHHHHHHhHHhhhccCcccccCccccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHH--
Confidence 2334667899999999998876633221111110000000 00122332 23333444444332 3333333333
Q ss_pred hhhcCCCccCCCchhHHHHHHHHHHHHHh-hhhhhhhhH----HHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Q psy12595 556 FQDLMTAKWLTSTVSIQTICMTLDDYFQD-YCHLVGKNL----EFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAE 630 (733)
Q Consensus 556 ~~~lft~~W~~~~~~v~~I~~t~~dy~~d-~~~l~~~~~----~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~ 630 (733)
+.+|.-.|--++-.++.-+.-+-+|+.. +..++..+. -..+...-.-++..-..++- -.. ..+ ..+-.
T Consensus 795 -K~vfHlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~~Nf~Rvl~a~w~~vl~~l~~~~g--~n~--d~~--~~Fy~ 867 (1103)
T KOG1328|consen 795 -KHVFHLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLHRNFLRVLSAQWSIVLKLLRECVG--ENV--DME--PAFYH 867 (1103)
T ss_pred -HHHHheecCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc--ccC--CCC--hHHHH
Confidence 3356789987776778888888888865 233443333 33333222222222222221 111 112 67888
Q ss_pred HHHHHHHHHHHHHhhccCCC------CCchhHHHHHHHHhccCCC-chhHHHHHHHhh
Q psy12595 631 KIVKETKQLKNLFSKYTTNI------DAPLDCILALSEVLKNEDS-EMLSLDLHTLLN 681 (733)
Q Consensus 631 ~i~~D~~~l~~~F~~~~s~~------~~~~~~l~~l~eli~~~d~-~~i~~~~~~l~~ 681 (733)
|+-.-.+.|-+||--=+-.- +..+.-|..+..+=+ +++ ..|..+|..+++
T Consensus 868 Rl~eal~~Lv~FFHAeGqGL~le~L~t~~~~rl~~~L~lhk-t~T~~lIe~fY~d~Lk 924 (1103)
T KOG1328|consen 868 RLFEALHVLVEFFHAEGQGLSLEALDTNPEHRLVKILSLHK-TPTEQLIEKFYKDLLK 924 (1103)
T ss_pred HHHHHHHHHHHHHhccCCCcchHhhccCcHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 99999999999997544321 133333555555555 344 466666666443
No 41
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=64.23 E-value=2.1e+02 Score=30.73 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=62.1
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhH-HHHHHHHH
Q psy12595 375 VI-KELENKYFKYIQENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQ-ELTERILL 452 (733)
Q Consensus 375 ~~-~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~-~l~~~v~~ 452 (733)
.+ +.|+..|+....--+.+-+.++++.|.-. ...+..+.++.+.|+..-|+|=+++..+..|-..+. +....++.
T Consensus 235 k~~qell~~Y~~Le~~y~~~Sv~KAi~lde~p---~~~~~~~~~~~~~SS~vDDvffil~k~l~RalsTg~~~~v~a~in 311 (331)
T PF08318_consen 235 KVNQELLGYYIPLEEFYLRRSVEKAIQLDELP---SLNSLLDSSSPPTSSVVDDVFFILRKVLRRALSTGSIDTVCAVIN 311 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccccccCCCcchhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44 88999999999999999999999888420 001111467789999999999999999998866655 66667766
Q ss_pred HHHHHHH
Q psy12595 453 LSVEHVT 459 (733)
Q Consensus 453 ~~~~~l~ 459 (733)
.+...|.
T Consensus 312 ~~~~iL~ 318 (331)
T PF08318_consen 312 HLVRILQ 318 (331)
T ss_pred HHHHHHH
Confidence 6655554
No 42
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=64.23 E-value=1.4e+02 Score=28.78 Aligned_cols=82 Identities=10% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHH-HHHhhhhhcCCchHHHHH
Q psy12595 54 MQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVT-AIENLTHVFAVPDSVERT 132 (733)
Q Consensus 54 v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~-~~~~l~~l~~~~~~v~~l 132 (733)
+-..+..++.++......+..|+.+.+.+.++.+-.+- +.++. +-....++.++.- ....++.....-+.|.++
T Consensus 35 v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLDP--~~~e~---~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L 109 (174)
T PF07426_consen 35 VIDSLLSVQSALNSAASKRERIKELFKRIEELNKYLDP--NFIEE---IQLPDSAKLQIILAEEDEIKSTAELLEKIKSL 109 (174)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcCc--hhhhh---cccchHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 44566677777777777788888888887777765552 22221 1112223333222 223344444444455666
Q ss_pred HhhhhcCc
Q psy12595 133 KQWISEGK 140 (733)
Q Consensus 133 ~~ll~~~~ 140 (733)
+..++...
T Consensus 110 ~pvL~se~ 117 (174)
T PF07426_consen 110 EPVLDSES 117 (174)
T ss_pred hhhcCcHH
Confidence 66676663
No 43
>KOG3958|consensus
Probab=63.61 E-value=1.9e+02 Score=30.03 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhh
Q psy12595 71 VLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHV 122 (733)
Q Consensus 71 a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l 122 (733)
....|.+|-+-+..-.-.|..-|.+|+++..|++++-.-.||...++.|+..
T Consensus 275 ~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~ 326 (371)
T KOG3958|consen 275 TDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTT 326 (371)
T ss_pred hhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666777778888888888998888888888888877544
No 44
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=61.45 E-value=1.7e+02 Score=32.15 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhh
Q psy12595 71 VLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENL 119 (733)
Q Consensus 71 a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l 119 (733)
....|.+|.+.+..++..+..-|.++++++.++.++..=.++...+..|
T Consensus 293 ~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~l 341 (388)
T PF04912_consen 293 QESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSEL 341 (388)
T ss_pred chhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788888887877777777666655555555544444
No 45
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=61.40 E-value=93 Score=31.09 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy12595 573 TICMTLDDYFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDA 652 (733)
Q Consensus 573 ~I~~t~~dy~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~~ 652 (733)
|+-+|-+.|...|.+--|+.|..++++++-.. +|+.-+..|+- . .-+|=-+ +..+..|...|++.. .
T Consensus 1 TVsDtKr~F~~~~~~pI~siYrrvv~ELLVe~------HLl~~n~~F~y-D--~lfalG~---vt~fd~fm~GY~p~~-~ 67 (216)
T PF11264_consen 1 TVSDTKRAFYKAFPRPIPSIYRRVVDELLVEL------HLLSVNKDFQY-D--PLFALGL---VTVFDRFMQGYPPEE-D 67 (216)
T ss_pred ChhHHHHHHHHhCCCCCcHHHHHHHHHHHHHH------HHHHhccCcee-C--chHHhhH---HHHHHHHhcCCCChh-H
Confidence 35678889999998888899999888876443 34443334431 1 3344433 245556666777654 4
Q ss_pred chhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12595 653 PLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQ 714 (733)
Q Consensus 653 ~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l~ 714 (733)
...+...+..=++ .||+.+...-..+....-..+...+...|...++-..+....++..++
T Consensus 68 ~~~If~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia 128 (216)
T PF11264_consen 68 KDSIFNALCQALG-FDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIA 128 (216)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHh
Confidence 5567777777777 699989888888888888889999999888765455555555555443
No 46
>KOG2115|consensus
Probab=60.29 E-value=3.8e+02 Score=32.43 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=88.9
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhccchhhhhc
Q psy12595 26 SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTV-------LEDMQTIKENIHEMKNSLQVLPPLGLK 98 (733)
Q Consensus 26 p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a-------~~~v~~i~~~l~~i~~~~~~~~~~v~~ 98 (733)
+..+..=..+..++.--.--||..|-..+....+.--.++..+++- ...|++++++|..|+..+ +..
T Consensus 235 ~~~~~~~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~------~~~ 308 (951)
T KOG2115|consen 235 AERLEANSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAEN------VRK 308 (951)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHh
Confidence 4455566667777777777888888888888777776666665544 445566666666666433 345
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHH
Q psy12595 99 LSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLM 149 (733)
Q Consensus 99 ~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~ 149 (733)
-..|-++..++.|+.++..-|.-+-.+...-..++.++.+..+..|-..+-
T Consensus 309 s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~ 359 (951)
T KOG2115|consen 309 SIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIK 359 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHH
Confidence 567888999999999999999999888888899999999998877766654
No 47
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=59.86 E-value=10 Score=34.74 Aligned_cols=106 Identities=7% Similarity=0.159 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh-hchHHHHHHHHHH
Q psy12595 31 KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLG-LKLSDLRAQNNRH 109 (733)
Q Consensus 31 kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v-~~~~~ik~l~~~~ 109 (733)
.|+.+++.+..-...+++.|-..|-.-...--.--..|......|..++.-+..+.+........+ +....|...-..+
T Consensus 27 ~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~ 106 (133)
T PF06148_consen 27 SLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEER 106 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666555544332222111111222222333334444433333333333223 2345566666666
Q ss_pred HhHHHHHHhhhhhcCCchHHHHHHhhh
Q psy12595 110 VQYVTAIENLTHVFAVPDSVERTKQWI 136 (733)
Q Consensus 110 ~nl~~~~~~l~~l~~~~~~v~~l~~ll 136 (733)
+++......++.+..+...+.++++++
T Consensus 107 ~~l~~~k~~l~~~l~~~~~~~kle~ll 133 (133)
T PF06148_consen 107 KELREEKALLKLLLDISESLEKLEDLL 133 (133)
T ss_dssp HHHHHHHHT-SSSSHHH----------
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccC
Confidence 777777777777777777777766553
No 48
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=57.30 E-value=73 Score=27.07 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHH
Q psy12595 49 TLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSD 101 (733)
Q Consensus 49 ~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ 101 (733)
+.+..++++++-....++.|.++.+.+..+...+..++.....+..++..+..
T Consensus 12 rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r 64 (92)
T PF03908_consen 12 RTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLER 64 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888899999999999999999999999999999998888876654
No 49
>KOG2069|consensus
Probab=56.24 E-value=3.6e+02 Score=30.90 Aligned_cols=176 Identities=14% Similarity=0.204 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHH
Q psy12595 29 LEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNR 108 (733)
Q Consensus 29 L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~ 108 (733)
|+.+..-+.+++.+.+.+++|+.+.. ..+...+-++-.....+.+.+..++.... .++-....+..-+..
T Consensus 33 ~e~l~ke~~~La~e~~~i~~q~q~La-------~~ny~t~id~A~~~~~i~~~~~~~~~~~~---~l~l~~~~L~s~~~~ 102 (581)
T KOG2069|consen 33 LEELRKEKALLAEEAAKIDAQTQDLA-------RDNYKTLIDTARNTDAIYQLFGRSRHDLK---ELSLQLPELTSPCKR 102 (581)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHhhHHhhhHHHH
Confidence 55555555567777777777776664 44555555565666666666655542111 111111111111122
Q ss_pred HHhHHHHHHhhhhhcCC-chHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHhcHHHHH
Q psy12595 109 HVQYVTAIENLTHVFAV-PDSVERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSDVEKVS 187 (733)
Q Consensus 109 ~~nl~~~~~~l~~l~~~-~~~v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~~~l~~~f~~v~~l~ 187 (733)
=.|..+.+..-.++-.+ -..-..+.++++-+.++..|-+.... ++++ |++.. ...|..+++.+ .++
T Consensus 103 f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~----~eal-el~a~-------~~RL~~~~~~~-pvi 169 (581)
T KOG2069|consen 103 FQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYY----DEAL-ELAAY-------ASRLKQRFGTI-PVI 169 (581)
T ss_pred HHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhh----hhHH-HHHHH-------HHHHHhhcccc-hHH
Confidence 22222222111111000 00002223333334444444433322 1111 12111 23455555555 445
Q ss_pred HHHHHHHHHHHHHHHh---hhhcCchHHHHHHHHHHhhhhhhh
Q psy12595 188 QLLEKQIKLILSRTLL---TVRKEPTVIVTALRIIEREEHLDQ 227 (733)
Q Consensus 188 ~~l~~~l~~~~~~~l~---~~~~~~~~lv~a~rIie~EE~~D~ 227 (733)
+.+..++...+...++ .....|-.+-+++||+-.-++...
T Consensus 170 ~~i~~~v~~tv~~ll~qL~~~l~~pl~l~~cirvv~ylr~~~~ 212 (581)
T KOG2069|consen 170 QEIATEVEQTVQKLLEQLIQQLRTPLQLPECIRVVGYLRRMAV 212 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5555555444444443 122347789999999999777654
No 50
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=55.64 E-value=4.6e+02 Score=31.99 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhh
Q psy12595 33 NQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLE---DMQTIKENIHEMKNSLQVLPPLG 96 (733)
Q Consensus 33 ~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~---~v~~i~~~l~~i~~~~~~~~~~v 96 (733)
.....++......+...|-..++.++++ .++..|....+ ++++++..+..++....+.....
T Consensus 205 ~~~~~~v~~~L~~~~~~lg~~i~~~l~~--~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~ 269 (806)
T PF05478_consen 205 SELKDHVSSDLDNIGSLLGGDIQDQLGS--NVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQ 269 (806)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665542 23333444444 66666666666665555444333
No 51
>KOG3691|consensus
Probab=55.49 E-value=4.5e+02 Score=31.76 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHhhhcCCCccCC-----CchhHHHHHHHHHHHHHhhhh-hhhhhHH
Q psy12595 525 KFEALLKVFEELRNDSAQYLLEEAFL----DLLPHFQDLMTAKWLT-----STVSIQTICMTLDDYFQDYCH-LVGKNLE 594 (733)
Q Consensus 525 ~~~~~~~~~~~l~~~~~~~L~~~i~~----dl~p~~~~lft~~W~~-----~~~~v~~I~~t~~dy~~d~~~-l~~~~~~ 594 (733)
..+.+.++|.+++..|.-.|-=+|-. ++.|.-+-=-+.-|+. .++-|-.+..++...-.-++. |+|.=++
T Consensus 774 ~~ee~~~~fq~la~~cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~~ 853 (982)
T KOG3691|consen 774 AYEELADSFQRLAFDCLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDVSGEPDPSVVALNKDLSTTEEKLKACLNEWKRR 853 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceeecccccCCCCHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 45678889999999998777544433 4444443334678887 233444555555555555543 5444444
Q ss_pred HHHHH---HHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHhc
Q psy12595 595 FIILE---AEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLK 665 (733)
Q Consensus 595 ~l~~~---~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~~~~~~l~~l~eli~ 665 (733)
++.+- +..+.+..|-+-+ +..+ ..+..||++++-.+..-++...+..+.-++.-..+=+++.
T Consensus 854 yIFeGL~hL~s~~LI~~a~~i-------~~ln--~~~ikkMcRNv~~lQQ~Lsnit~~revdld~ar~fy~ll~ 918 (982)
T KOG3691|consen 854 YIFEGLGHLVSSILISGAQYI-------ERLN--EGGIKKMCRNVSALQQILSNITESREVDLDKARRFYELLQ 918 (982)
T ss_pred HHHhhHHHHHHHHHHHHHHHH-------HHhh--HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 44332 3344444444433 2222 6788899999999999999887654544455555556655
No 52
>PRK13266 Thf1-like protein; Reviewed
Probab=54.47 E-value=1.7e+02 Score=29.51 Aligned_cols=121 Identities=16% Similarity=0.105 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy12595 571 IQTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNI 650 (733)
Q Consensus 571 v~~I~~t~~dy~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~ 650 (733)
..|+-+|-+.|+..|.+.-|+.|..++++++-.. .|++....|+- . .-+|=.+ +.....|...|++..
T Consensus 4 ~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVEl------HLl~~n~~F~y-D--plfAlGl---vt~fd~fm~GY~Pee 71 (225)
T PRK13266 4 RRTVSDSKRAFYAAFPRPINSIYRRVVDELLVEL------HLLSVNSDFKY-D--PLFALGL---VTVFDRFMQGYRPEE 71 (225)
T ss_pred CCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH------HHHHhccCcee-C--chHHhhH---HHHHHHHHcCCCChH
Confidence 4567888999999999988999999988886443 44544444442 1 3444443 245556666776654
Q ss_pred CCchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHH
Q psy12595 651 DAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQE 705 (733)
Q Consensus 651 ~~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e 705 (733)
....++..+..=++ .||+.+...-..+....-+.+.+.+...|.-.++-....
T Consensus 72 -~~~~IF~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~ 124 (225)
T PRK13266 72 -HKDSIFNALCQAVG-FDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGG 124 (225)
T ss_pred -HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchh
Confidence 45567777777777 688888888888888888889998888888776544433
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.57 E-value=3.1e+02 Score=29.33 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 46 VETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMK 86 (733)
Q Consensus 46 vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~ 86 (733)
+-..|+.+++..+++...-...|......++++...+.+..
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~ 186 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERK 186 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777776666654443
No 54
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=53.38 E-value=2e+02 Score=28.24 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=26.4
Q ss_pred CChhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHh
Q psy12595 168 QSMADKLLLQDYFSDVEKVSQLLEKQIKLILSRTLL 203 (733)
Q Consensus 168 ~~~~~~~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~ 203 (733)
.+.+....+.+.-+-++.+...|++++..++.+-+.
T Consensus 154 ~~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~~d~~ 189 (199)
T PF10112_consen 154 KSEEIKQSLEEIEETLDTLNQAFEKDLDKLLEDDIM 189 (199)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344445567777788888888898888888877654
No 55
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=53.19 E-value=1.8e+02 Score=28.77 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy12595 572 QTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID 651 (733)
Q Consensus 572 ~~I~~t~~dy~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~ 651 (733)
.|+-+|-+.|...|.+.-|+.|..++++++-.. .|++....|+- . .-+|=-+ +.....|+..|++..
T Consensus 3 ~TVsDtKr~F~~~~p~pI~siYrrvv~ELLVE~------HLl~~n~~f~y-D--~lfAlGl---vt~fd~fm~GY~Pee- 69 (206)
T PLN03060 3 PTVADTKASFLKAYRKPIPSIYSNVIQELLVQQ------HLMRYNATYKY-D--PIFALGF---VTVYDQLMDGYPNAT- 69 (206)
T ss_pred CcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH------HHHHhccCcee-C--chHHhhH---HHHHHHHHcCCCChH-
Confidence 467888899999999988999999988886443 45544444442 1 3344443 245556666777654
Q ss_pred CchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy12595 652 APLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYV 713 (733)
Q Consensus 652 ~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l 713 (733)
....++..+..=++ .||+.+...-..+....-+.+...+...|.-.| -.....+.++...
T Consensus 70 ~~~~IF~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~-~~~~~l~~~~~~~ 129 (206)
T PLN03060 70 DRDAIFKAYIEALG-EDPDQYRKDAKKLEEWASSQSASGIADFNSGDG-EVEAVLKDIAERA 129 (206)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccc-ccchHHHHHHHHh
Confidence 45577777777777 699999888899888888999999999988777 3344444444433
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=52.95 E-value=2.7e+02 Score=28.38 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 29 LEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVL 72 (733)
Q Consensus 29 L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~ 72 (733)
|++|+.-+.|+..+..+...-|+.+ ++.+++....+..+..+.
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~-~~e~e~~~~~~~~~~~e~ 54 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKA-KAELEALNKALEALEIEL 54 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444554555555555444444433 344444444444444333
No 57
>KOG0031|consensus
Probab=50.32 E-value=89 Score=29.30 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=51.2
Q ss_pred HHHHHHHhhccCCCC---------------CchhHHHHHHHHhccCCCc-hhHHHHHHHhhhC-CCCCHHHHHHHHhhcC
Q psy12595 637 KQLKNLFSKYTTNID---------------APLDCILALSEVLKNEDSE-MLSLDLHTLLNKY-PDISDDHISRLLTLRG 699 (733)
Q Consensus 637 ~~l~~~F~~~~s~~~---------------~~~~~l~~l~eli~~~d~~-~i~~~~~~l~~~y-pD~~~~~v~aiL~~R~ 699 (733)
+.|+++|..++.... ...--|..++|-|...||+ .|...++.|=..- .-|..+++.-+|.-+|
T Consensus 52 eDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 52 EDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc
Confidence 456677777665421 4555566779999988995 4422222221111 2278999999999999
Q ss_pred C-CCHHHHHHHHHH
Q psy12595 700 D-LSRQEIRDIVLY 712 (733)
Q Consensus 700 d-l~r~e~~~il~~ 712 (733)
| ++..|+..+...
T Consensus 132 Dr~~~eEV~~m~r~ 145 (171)
T KOG0031|consen 132 DRFTDEEVDEMYRE 145 (171)
T ss_pred ccCCHHHHHHHHHh
Confidence 9 999999988775
No 58
>KOG0977|consensus
Probab=50.07 E-value=4.5e+02 Score=30.19 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=30.5
Q ss_pred CchHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHhc--HHHHHHHHHHHHHHHHHHH
Q psy12595 125 VPDSVERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSD--VEKVSQLLEKQIKLILSRT 201 (733)
Q Consensus 125 ~~~~v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~~~l~~~f~~--v~~l~~~l~~~l~~~~~~~ 201 (733)
+...+..++..+++.-|+.. ++++--+.+++++.-+...+...+..+..++.. .....+.|...|-..++++
T Consensus 181 l~~~l~~~r~~ld~Etllr~-----d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~ei 254 (546)
T KOG0977|consen 181 LREELARARKQLDDETLLRV-----DLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREI 254 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 44444555555544433322 233333444444443322333344444444442 1344455555554444443
No 59
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=47.65 E-value=2e+02 Score=26.09 Aligned_cols=45 Identities=7% Similarity=0.127 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcC
Q psy12595 78 IKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFA 124 (733)
Q Consensus 78 i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~ 124 (733)
+-.+|..++...+++.+..+.++ +++..++.++...-..++.++.
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~--~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIK--DEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 44666666666666555544332 3455556665555555544443
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.95 E-value=1.9e+02 Score=31.02 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=9.3
Q ss_pred ChhhHHHHHHHHhcHHHH
Q psy12595 169 SMADKLLLQDYFSDVEKV 186 (733)
Q Consensus 169 ~~~~~~~l~~~f~~v~~l 186 (733)
+..++..|..-|..++.+
T Consensus 274 t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKL 291 (325)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 444556666555554443
No 61
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=46.40 E-value=51 Score=25.10 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHhhhhhcCCc-hHHHHHHhhhhcC---chHHHHHHHHH
Q psy12595 112 YVTAIENLTHVFAVP-DSVERTKQWISEG---KLLHAHQSLMD 150 (733)
Q Consensus 112 l~~~~~~l~~l~~~~-~~v~~l~~ll~~~---~LL~ah~~L~~ 150 (733)
...+++.|......+ ..+.+++.++.++ .||++|..+.+
T Consensus 5 ~~e~L~~L~~~~~~~~~~~~eL~~lL~~p~~~aLl~~hD~va~ 47 (56)
T PF02828_consen 5 VLELLEELQSLSSASQEDAQELQQLLQSPHFQALLEVHDKVAQ 47 (56)
T ss_dssp HHHHHHHHHHHTSSTHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 344566666666666 8889999999998 69999999884
No 62
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=44.83 E-value=1.2e+02 Score=22.82 Aligned_cols=50 Identities=18% Similarity=0.417 Sum_probs=34.4
Q ss_pred chhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 28 QLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEM 85 (733)
Q Consensus 28 ~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i 85 (733)
.+.+|+++.+++...-.++|.-++. ...|+..+..|+..+...+.++..|
T Consensus 4 ~~~~Le~Iv~~Le~~~~sLdes~~l--------yeeg~~l~~~c~~~L~~~e~~i~~l 53 (53)
T PF02609_consen 4 AMERLEEIVEKLESGELSLDESLKL--------YEEGMELIKKCQERLEEAEQKIEEL 53 (53)
T ss_dssp HHHHHHHHHHHHHTT-S-HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567778888887777777655443 4677888888888888877776543
No 63
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=44.65 E-value=3.5e+02 Score=27.44 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=5.3
Q ss_pred CchHHHHHHhhh
Q psy12595 125 VPDSVERTKQWI 136 (733)
Q Consensus 125 ~~~~v~~l~~ll 136 (733)
+|+-++.++++=
T Consensus 200 lP~lLd~lQ~l~ 211 (234)
T cd07686 200 LPLLLDSLQKMQ 211 (234)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 64
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=44.21 E-value=1.7e+02 Score=32.58 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=60.1
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchhhhhchHHHH
Q psy12595 26 SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVL--EDMQTIKENIHEMKNSLQVLPPLGLKLSDLR 103 (733)
Q Consensus 26 p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~--~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik 103 (733)
|..++++..+..+ ..+..++..+|.+.+..+...++.-+-..++|+ .++..+++...++..+ +. +.|+
T Consensus 303 P~~~~el~~~l~~-V~~~~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y~~l~~~---n~------~l~~ 372 (431)
T PF14782_consen 303 PDEMEELREILEK-VDELNEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYYAELYDL---NR------DLIN 372 (431)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHHHHHHHH---HH------HHHH
Confidence 7778888888877 567888999999999999988888888888876 5555555554444322 12 2234
Q ss_pred HHHHHHHhHHHHHHhhhhhcC
Q psy12595 104 AQNNRHVQYVTAIENLTHVFA 124 (733)
Q Consensus 104 ~l~~~~~nl~~~~~~l~~l~~ 124 (733)
+-.....|.......|+.+..
T Consensus 373 ~~~~R~~N~~~l~~~lk~vn~ 393 (431)
T PF14782_consen 373 EYKIRCNNHEELLSSLKEVNQ 393 (431)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 444555666666666655533
No 65
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=42.84 E-value=2.3e+02 Score=32.15 Aligned_cols=107 Identities=9% Similarity=0.086 Sum_probs=66.8
Q ss_pred HHHHHHH-HhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 6 QLEKEAK-QNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKIS-VETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIH 83 (733)
Q Consensus 6 ~~e~~a~-~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~-vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~ 83 (733)
+.-..++ .+.+.++.+++.+..+...++..-.++.++.++ +..-+++..+-+.+. ..-......++..|+...
T Consensus 7 q~~~~~~~d~~l~~v~Di~eq~~kf~~l~~h~~~~~~e~~~~ln~~~n~~~~i~~~~-~e~~~l~e~~r~~V~~~~---- 81 (742)
T COG5173 7 QLSETLRHDSDLQTVLDIIEQSTKFEALEHHDGNLSAEISKCLNNILNISKRIYGLE-EELKSLVEGKRRNVRVLK---- 81 (742)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHH----
Confidence 3333444 456788888887777777888888889988888 444444433322222 122222333334443322
Q ss_pred HHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcC
Q psy12595 84 EMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFA 124 (733)
Q Consensus 84 ~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~ 124 (733)
. .-.+++.|+.++--+.+|.|+..+++...+|..
T Consensus 82 ---~----~fr~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied 115 (742)
T COG5173 82 ---G----FFRLVKDYRSVKMTCLAHSNLCNVVEFSDRIED 115 (742)
T ss_pred ---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234677889999999999999998888777644
No 66
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=42.66 E-value=7.6e+02 Score=30.67 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHh
Q psy12595 145 HQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSDVEKVSQLLEKQIKLILSRTLL 203 (733)
Q Consensus 145 h~~L~~LE~~rd~~l~e~~~~~~~~~~~~~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~ 203 (733)
+..|.++|..|++-+. . .+.|.+- |. +++|+.|.+.|..-=-.++...+.
T Consensus 1210 ~d~laeiE~LrnErIK-k---HGaSkeP---LD--lSDlDkLk~~LQ~iNQ~LV~~LIn 1259 (1439)
T PF12252_consen 1210 NDRLAEIEFLRNERIK-K---HGASKEP---LD--LSDLDKLKGQLQKINQNLVKALIN 1259 (1439)
T ss_pred HhhhhHHHHHHHHHhh-c---cCCCCCc---cc--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888876653 2 2234321 11 255666655555544444444444
No 67
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.26 E-value=6.1e+02 Score=29.46 Aligned_cols=182 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 9 KEAKQNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNS 88 (733)
Q Consensus 9 ~~a~~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~ 88 (733)
.+.-..+-..+.++...-++|-..+.--+....+....=.+++..+-++-.....++..|..-..++..-+..+.+.-.
T Consensus 107 ~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~- 185 (560)
T PF06160_consen 107 EEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTE- 185 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcC-----CchHHHHH----HhhhhcC---chHHHHHHHHHHHHHHH
Q psy12595 89 LQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFA-----VPDSVERT----KQWISEG---KLLHAHQSLMDLEKSRD 156 (733)
Q Consensus 89 ~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~-----~~~~v~~l----~~ll~~~---~LL~ah~~L~~LE~~rd 156 (733)
+..-++.-+.+..+......|...++.+|.|+. +|..++++ +.|.++| .=+.+...+-.++.-..
T Consensus 186 ---~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~ 262 (560)
T PF06160_consen 186 ---NGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLE 262 (560)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccCCChhhHHHHHHHHhcHHHHHHHHHHHHHH
Q psy12595 157 ELMYETHKLSGQSMADKLLLQDYFSDVEKVSQLLEKQIKL 196 (733)
Q Consensus 157 ~~l~e~~~~~~~~~~~~~~l~~~f~~v~~l~~~l~~~l~~ 196 (733)
+++..+... .-..-...+...-.+++.+++.|++.+-.
T Consensus 263 ~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~A 300 (560)
T PF06160_consen 263 EALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEA 300 (560)
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 68
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=42.23 E-value=2.1e+02 Score=31.82 Aligned_cols=73 Identities=12% Similarity=0.285 Sum_probs=47.3
Q ss_pred HhhCCCcchh-hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccch
Q psy12595 21 TLLQRSDQLE-KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENI--HEMKNSLQVLP 93 (733)
Q Consensus 21 ~ll~~p~~L~-kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l--~~i~~~~~~~~ 93 (733)
.++.+-+||. -|+.+|+.+..+.....-+--..|...++.+...+..|......++-+-.++ .+++..|++-+
T Consensus 217 ~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQq 292 (424)
T PF03915_consen 217 RLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQ 292 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 4555567777 8888888888888888777666777777777777777777766666666665 45556666644
No 69
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=41.69 E-value=3e+02 Score=25.80 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=20.6
Q ss_pred HHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhh
Q psy12595 82 IHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLT 120 (733)
Q Consensus 82 l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~ 120 (733)
+..+..+...++++-+.+..+..+...-+.+..+++.++
T Consensus 108 ik~~y~liakceELn~~M~~v~~La~qIK~Ik~~lD~lE 146 (149)
T PF10157_consen 108 IKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKLLDLLE 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555554443
No 70
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=41.07 E-value=3.9e+02 Score=26.88 Aligned_cols=13 Identities=8% Similarity=0.089 Sum_probs=5.8
Q ss_pred hccCCChhhHHHH
Q psy12595 164 KLSGQSMADKLLL 176 (733)
Q Consensus 164 ~~~~~~~~~~~~l 176 (733)
.+++-.|+|..++
T Consensus 146 ~yPDL~~~D~ATi 158 (228)
T PF07373_consen 146 QYPDLTPTDVATI 158 (228)
T ss_pred hCCCCCccchhHH
Confidence 3444444444443
No 71
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=38.91 E-value=3.3e+02 Score=27.18 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy12595 571 IQTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNI 650 (733)
Q Consensus 571 v~~I~~t~~dy~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~ 650 (733)
..|+-+|-+.|...|.+.-|+.|..++++++-.. .|++....|+- . .-+|=-+ +.....|+..|++..
T Consensus 4 ~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVEl------HLl~~n~~F~y-D--plfAlGl---vt~fd~fm~GY~Pee 71 (214)
T TIGR03060 4 RRTVSDSKRAFHAAFPRVIPPLYRRVVDELLVEL------HLLSHQSDFKY-D--PLFALGL---VTVFDRFMEGYRPEE 71 (214)
T ss_pred CCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH------HHHHhccCcee-C--chHHhhH---HHHHHHHHcCCCChH
Confidence 3567888899999999988999999998886443 44544444442 1 3344443 245556666776654
Q ss_pred CCchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCCC
Q psy12595 651 DAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDL 701 (733)
Q Consensus 651 ~~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl 701 (733)
....++..+..=++ .||+.+...-..+....-+.+.+.+...|.-.++-
T Consensus 72 -~~~~IF~Alc~a~~-~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~ 120 (214)
T TIGR03060 72 -HLDALFDALCNSNG-FDPEQLREDAKQLLEQAKGKGLDEILSWLTQANLS 120 (214)
T ss_pred -HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccC
Confidence 45567777777777 68888888888888888888888888888877643
No 72
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=38.01 E-value=2.5e+02 Score=24.48 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh-hchHH-HHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhc
Q psy12595 61 VISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLG-LKLSD-LRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISE 138 (733)
Q Consensus 61 ~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v-~~~~~-ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~ 138 (733)
....+.++..| .++.++...+..++..+.++.... ..... =.+...-+.-|..++ ..|+.++.+++.
T Consensus 10 m~~~~k~~~~a-~~~~e~~~~l~~m~~~a~~ak~~~P~~~~~d~~~~~~Y~~Gl~~li----------~~id~a~~~~~~ 78 (103)
T PF07361_consen 10 MKKNYKQAAKA-DDAAEMKTALDKMRAAAEDAKQGKPPKLEGDSAEVKDYQEGLDKLI----------DQIDKAEALAEA 78 (103)
T ss_dssp HHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHTTTS-GGGTTTSHHHHHHHHHHHHHH----------HHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHH----------HHHHHHHHHHHC
Confidence 34444555554 566667777777776666554322 11111 111222233333333 345788889999
Q ss_pred CchHHHHHHHHHHHHHHH
Q psy12595 139 GKLLHAHQSLMDLEKSRD 156 (733)
Q Consensus 139 ~~LL~ah~~L~~LE~~rd 156 (733)
|+|-+|-..|..+...|.
T Consensus 79 G~l~~AK~~l~~l~~lR~ 96 (103)
T PF07361_consen 79 GKLDEAKAALKKLDDLRK 96 (103)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999998888876
No 73
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=37.93 E-value=2.5e+02 Score=31.63 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHhHHHHHHHhhCCCcchh-hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 10 EAKQNVSKQLLTLLQRSDQLE-KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQ 76 (733)
Q Consensus 10 ~a~~~a~~~i~~ll~~p~~L~-kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~ 76 (733)
+-....-..++.+.+.-.||+ ++..+..++.-...+++.+|..+-....+..+..++.|...++.+.
T Consensus 344 Eksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~ 411 (531)
T PF15450_consen 344 EKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEME 411 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666667787 8888888888888888888888877666777777777776665544
No 74
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=37.65 E-value=36 Score=23.95 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=23.7
Q ss_pred HHHHhhhCCCCCHHHHHHHHh-hcCCCCH
Q psy12595 676 LHTLLNKYPDISDDHISRLLT-LRGDLSR 703 (733)
Q Consensus 676 ~~~l~~~ypD~~~~~v~aiL~-~R~dl~r 703 (733)
+.-|.+.||.-....++.||. |+||+=+
T Consensus 5 idiL~rvFP~~kr~~Le~iL~~C~GDvv~ 33 (39)
T PF03474_consen 5 IDILTRVFPHQKRSVLELILQRCNGDVVQ 33 (39)
T ss_pred HHHHHHHCCCCChHHHHHHHHHcCCcHHH
Confidence 456789999999999999998 8898633
No 75
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=36.53 E-value=3.7e+02 Score=25.26 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=4.6
Q ss_pred hHHHHHHHH
Q psy12595 4 IDQLEKEAK 12 (733)
Q Consensus 4 ~~~~e~~a~ 12 (733)
+..+|.+|+
T Consensus 54 L~~LE~~a~ 62 (149)
T PF10157_consen 54 LHDLERDAQ 62 (149)
T ss_pred HHHHHHHHH
Confidence 344555555
No 76
>PHA03332 membrane glycoprotein; Provisional
Probab=36.29 E-value=7e+02 Score=30.91 Aligned_cols=78 Identities=9% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcCchHHH
Q psy12595 65 IQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHA 144 (733)
Q Consensus 65 l~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~a 144 (733)
+++|-.+-+++.+++.+|.+.++..+... ..|.++...--++++++. ++|..++..|..|++-+..+ ++..
T Consensus 883 ~~~llqnaaaia~mksaIg~tNaAV~~ls------Dai~klGnti~kisatl~--~nI~avNgRIs~Led~VN~r-~~~v 953 (1328)
T PHA03332 883 VNQLLQATAATAEMASKIGGLNARVDKTS------DVITKLGDTIAKISATLD--NNIRAVNGRVSDLEDQVNLR-FLAV 953 (1328)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHH--hhHHHhcccHHHHHHHHHHH-HHHH
Confidence 33444444555555555554443333222 223333333333333332 46777777777777766655 4444
Q ss_pred HHHHHHH
Q psy12595 145 HQSLMDL 151 (733)
Q Consensus 145 h~~L~~L 151 (733)
-.++..|
T Consensus 954 ~~~intL 960 (1328)
T PHA03332 954 ATNFNTL 960 (1328)
T ss_pred HHHHHHH
Confidence 4444433
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.28 E-value=7.5e+02 Score=28.77 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhcC-----CchHHHHH
Q psy12595 101 DLRAQNNRHVQYVTAIENLTHVFA-----VPDSVERT 132 (733)
Q Consensus 101 ~ik~l~~~~~nl~~~~~~l~~l~~-----~~~~v~~l 132 (733)
.+.++...-..|...++.+|.|+. +|..++++
T Consensus 199 ~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el 235 (569)
T PRK04778 199 ILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344444444555555555544332 55555554
No 78
>KOG0810|consensus
Probab=35.75 E-value=5.5e+02 Score=27.10 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=45.9
Q ss_pred HHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccCCC---hhhHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHH
Q psy12595 129 VERTKQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQS---MADKLLLQDYFSDVEKVSQLLEKQIKLILS---RTL 202 (733)
Q Consensus 129 v~~l~~ll~~~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~---~~~~~~l~~~f~~v~~l~~~l~~~l~~~~~---~~l 202 (733)
=++++++++.|+.-..-..+..-..-...++.|+....+.- ...+..|+..|-++..|++.=+..|-.|-. ++.
T Consensus 168 de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~ 247 (297)
T KOG0810|consen 168 DEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAV 247 (297)
T ss_pred hHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 37788888888543333333321111222333322110000 002678889999988888665555555444 444
Q ss_pred hhhhcCchHHHHHH
Q psy12595 203 LTVRKEPTVIVTAL 216 (733)
Q Consensus 203 ~~~~~~~~~lv~a~ 216 (733)
+-+..+.+-+.+|+
T Consensus 248 ~~V~~g~~~~~kAv 261 (297)
T KOG0810|consen 248 DYVEQGVDHLKKAV 261 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555566553
No 79
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.13 E-value=1.9e+02 Score=27.56 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CchhHHHHHHHHhccCCC
Q psy12595 593 LEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID---APLDCILALSEVLKNEDS 669 (733)
Q Consensus 593 ~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~---~~~~~l~~l~eli~~~d~ 669 (733)
.+.+-.+...+=-..||..||+.. |++.|..++..+.+... ..+-.++.+.+=|-..-.
T Consensus 70 aqri~~~~arrRQlQyIGKlmR~~------------------DvepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLia~GD 131 (187)
T COG3028 70 AQRIKSEIARRRQLQYIGKLMRDR------------------DVEPIRAALDKLRNRHNQQVALLHKLEQLRDRLIAEGD 131 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------------------ChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCc
Q ss_pred chhHHHHHHHhhhCCCCCHHHHHHHHh
Q psy12595 670 EMLSLDLHTLLNKYPDISDDHISRLLT 696 (733)
Q Consensus 670 ~~i~~~~~~l~~~ypD~~~~~v~aiL~ 696 (733)
+.| ..|+..|||+...++..++.
T Consensus 132 ~Al----t~~l~~~P~aDrq~LR~LvR 154 (187)
T COG3028 132 GAL----TEFLNQYPDADRQQLRTLIR 154 (187)
T ss_pred hHH----HHHHHHCCcccHHHHHHHHH
No 80
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.47 E-value=1.8e+02 Score=26.20 Aligned_cols=76 Identities=9% Similarity=0.157 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh----hchHHHHH
Q psy12595 29 LEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLG----LKLSDLRA 104 (733)
Q Consensus 29 L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v----~~~~~ik~ 104 (733)
+..+-.-..++.+.+..+...|-... ...++.+.....+..-+..++++..+....=.++.+-..-+ .+..++|.
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv~l~-~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIVKLM-EENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555543 33455555555555566666666665555444444333333 34555554
Q ss_pred H
Q psy12595 105 Q 105 (733)
Q Consensus 105 l 105 (733)
+
T Consensus 111 m 111 (120)
T PF12325_consen 111 M 111 (120)
T ss_pred H
Confidence 4
No 81
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=34.33 E-value=1.6e+02 Score=23.49 Aligned_cols=53 Identities=11% Similarity=0.277 Sum_probs=41.2
Q ss_pred cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 27 DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKN 87 (733)
Q Consensus 27 ~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~ 87 (733)
+.+++|+.+.+++...--++|.-++. -..|+..+..|+..++..+.++..+..
T Consensus 5 e~l~~Le~Iv~~LE~~~l~Leesl~l--------yeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 5 EALSELEQIVQKLESGDLALEEALNL--------FERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888887765544 578888899999888888888877764
No 82
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.73 E-value=3.6e+02 Score=27.92 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHHH
Q psy12595 44 ISVETTLKTAMQS 56 (733)
Q Consensus 44 ~~vd~~Lk~~v~~ 56 (733)
.+++..|+.++++
T Consensus 161 ~~iE~~l~~ai~~ 173 (267)
T PF10234_consen 161 NEIEKALKEAIKA 173 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 83
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=32.34 E-value=2.4e+02 Score=21.87 Aligned_cols=41 Identities=10% Similarity=0.231 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Q psy12595 55 QSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPL 95 (733)
Q Consensus 55 ~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~ 95 (733)
..-++.+-..++.|..+...+..+=+.+..|..+|.++...
T Consensus 15 ~~~~e~vl~nlN~LNRsLE~~i~VGkEF~~V~~LW~~F~~~ 55 (58)
T PF08649_consen 15 SESMESVLNNLNALNRSLESVISVGKEFESVSSLWSQFYNG 55 (58)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999887654
No 84
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=32.19 E-value=2.2e+02 Score=29.50 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy12595 570 SIQTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTN 649 (733)
Q Consensus 570 ~v~~I~~t~~dy~~d~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~ 649 (733)
...|+-+|-..|+..|.+.-|+.|..++++++-.. +|++.+..|+- . .-+|=-+ +..+..|+..|++.
T Consensus 54 ~~~TVSDTKr~F~~~yp~pIpsiYrrvvdELLVEl------HLLs~n~~F~y-D--plFALGl---Vtvfd~fm~GY~Pe 121 (283)
T PLN00047 54 VPPTVAETKAKFLKSYKRPIPSIYSTVLQELLVQQ------HLMRYKKTYRY-D--PVFALGF---VTVYDQLMEGYPSD 121 (283)
T ss_pred CCCcHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH------HHHHhccCcee-C--chhhhhh---HHHHHHHHccCCCh
Confidence 35678899999999999988999999998886443 44543444431 1 3344333 24555667777765
Q ss_pred CCCchhHHHHHHHHhccCCCchhHHHHHHHhhhCCCCCHHHHHHHHhhcC
Q psy12595 650 IDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRG 699 (733)
Q Consensus 650 ~~~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~ 699 (733)
. ....++..+..=++ .||+.+..+-..+....-+.+.+.+...+...|
T Consensus 122 e-~~~~IF~Alc~a~g-~Dp~qyr~dA~~l~~~A~~~s~~~l~~~l~~~~ 169 (283)
T PLN00047 122 E-DRDAIFKAYIKALG-EDPEQYRKDAAKLEEWARSQTGSSLVDFSSKEG 169 (283)
T ss_pred H-HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcch
Confidence 4 45567777777777 688888888888888887888887777776554
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.56 E-value=6.6e+02 Score=26.71 Aligned_cols=99 Identities=11% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 6 QLEKEAKQNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVET----------TLKTAMQSQLDGVISGIQELKTVLEDM 75 (733)
Q Consensus 6 ~~e~~a~~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~----------~Lk~~v~~ql~~~~~gl~~L~~a~~~v 75 (733)
+.+..--......+.+++ |+-.++...++.++..-++..+. +++..+..+...+..-...+.+.+..+
T Consensus 157 ~~D~~~L~~~~~~l~~~~--~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 157 KEDYKLLMKELELLNSIK--PKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhccchhhhhchHHHHHHH
Q psy12595 76 QTIKENIHEMKNSLQVLPPLGLKLSDLRAQN 106 (733)
Q Consensus 76 ~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~ 106 (733)
+++...|.+.....++....|...+.+.+-+
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 86
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.26 E-value=1.9e+02 Score=23.76 Aligned_cols=53 Identities=9% Similarity=0.276 Sum_probs=41.5
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 26 SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMK 86 (733)
Q Consensus 26 p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~ 86 (733)
.+.+.+|+.+.+++...--+++.-++. -..|+..+..|+..++..+.++..+-
T Consensus 8 Eeal~~LE~Iv~~LE~~~l~Leesl~l--------yeeG~~L~k~C~~~L~~aE~ki~~l~ 60 (76)
T PRK14063 8 EEAISQLEHLVSKLEQGDVPLEEAISY--------FKEGMELSKLCDEKLKNVQEQMAVIL 60 (76)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888766554 47889999999999998888876653
No 87
>KOG4514|consensus
Probab=28.76 E-value=5.4e+02 Score=24.79 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=27.4
Q ss_pred HHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhh
Q psy12595 82 IHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHV 122 (733)
Q Consensus 82 l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l 122 (733)
|.-.-.++..++++-+.+..++++...-|++..++++|+-+
T Consensus 181 IK~~Y~lLAk~EEi~ksm~pv~~La~qir~irRlve~lesl 221 (222)
T KOG4514|consen 181 IKCQYQLLAKAEEITKSMKPVEQLAQQIRQIRRLVEMLESL 221 (222)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 44444566666666677777777777777777777766543
No 88
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=28.49 E-value=3.1e+02 Score=29.25 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcC
Q psy12595 73 EDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEG 139 (733)
Q Consensus 73 ~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~ 139 (733)
..+..+.+...++..++.. +..+.+...+++++..+..|..++.....+....+.++..+.++.+.
T Consensus 7 ~kl~~~~~r~~el~~~L~~-p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~ 72 (363)
T COG0216 7 EKLESLLERYEELEALLSD-PEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEE 72 (363)
T ss_pred HHHHHHHHHHHHHHHHhcC-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566677777777765 55778889999999999999999999888877777777777777654
No 89
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.44 E-value=2.1e+02 Score=23.71 Aligned_cols=54 Identities=11% Similarity=0.305 Sum_probs=42.9
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 26 SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKN 87 (733)
Q Consensus 26 p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~ 87 (733)
.+.+++|+.+.+++...--++|.-++. ...|+..+..|+..++..+.++..+..
T Consensus 13 Eea~~~LEeIv~~LE~~~l~Lees~~l--------yeeg~~L~k~C~~~L~~ae~ki~~l~~ 66 (80)
T PRK00977 13 EEALAELEEIVTRLESGDLPLEESLAA--------FERGVALARQCQKKLQQAEQRVEKLLD 66 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445778888888888888888766554 578899999999999999988887754
No 90
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=28.08 E-value=1e+03 Score=27.79 Aligned_cols=84 Identities=6% Similarity=0.113 Sum_probs=55.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHhcChH
Q psy12595 419 HYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVYFTHFMIAMLNNCL 498 (733)
Q Consensus 419 ~~~t~~~~dlfqmi~~ql~~a~~~~~~l~~~v~~~~~~~l~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~liA~~N~~~ 498 (733)
|-+|.++.++..++.+.+.-|...+.....+ +.....+.+..|...+-.++.+.+.. ......-+=|||.
T Consensus 450 c~IS~s~~~l~~L~~~~L~ea~~~~~~~a~~----l~~~~r~i~~ly~~~vP~~h~~~l~~------ip~~aalf~NdC~ 519 (593)
T PF06248_consen 450 CRISKSAQELVELAHQTLKEACKSSERCAAQ----LFQTARDIFELYRAVVPVYHKKLLES------IPQQAALFHNDCM 519 (593)
T ss_pred ceechhHHHHHHHHHHHHHHHhcCChhhHHH----HHHHHHHHHHHHHHHccHHHHhhccc------ccHHHHhHhcchH
Confidence 7788899999999999999885555433333 33444566666776664444443311 1123456679999
Q ss_pred HHHHHHHHHHhhhh
Q psy12595 499 KFVELAHQMKQTFW 512 (733)
Q Consensus 499 ~~~~~~~~l~~~~~ 512 (733)
+++.....+...+.
T Consensus 520 ylah~l~~l~~~~~ 533 (593)
T PF06248_consen 520 YLAHHLLTLGHEYR 533 (593)
T ss_pred HHHHHHHHhHHHHh
Confidence 99887777776664
No 91
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.34 E-value=1.5e+02 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.491 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 57 QLDGVISGIQELKTVLEDMQTIKENI 82 (733)
Q Consensus 57 ql~~~~~gl~~L~~a~~~v~~i~~~l 82 (733)
++++.+..+..|+....+|.++-+++
T Consensus 19 KVdaLq~~V~~l~~~~~~v~~l~~kl 44 (75)
T PF05531_consen 19 KVDALQTQVDDLESNLPDVTELNKKL 44 (75)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33344444444444444444444433
No 92
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=27.15 E-value=4.7e+02 Score=23.96 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12595 11 AKQNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQ 90 (733)
Q Consensus 11 a~~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~ 90 (733)
...+-...+-+.+..+.+++-|..+-.++.++.+..+..+-..|=.=--|-..-++.|..+--+.++++--+.+|+..++
T Consensus 42 NG~~~~~lvie~l~~~~~~~~i~~la~KiAkER~~A~iNIgeFVYN~NlGR~~~~~~l~~~~~~~~el~~~i~~IN~~FD 121 (133)
T PF09385_consen 42 NGEAMFELVIEYLREEISLEEIQQLAYKIAKERAEANINIGEFVYNVNLGRSELLKYLFKLGIDWNELQPIIEKINYFFD 121 (133)
T ss_dssp HHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHhhHhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 33455677889999999999999999999999999999999998776667677777777777777777777777776655
Q ss_pred c
Q psy12595 91 V 91 (733)
Q Consensus 91 ~ 91 (733)
.
T Consensus 122 k 122 (133)
T PF09385_consen 122 K 122 (133)
T ss_dssp H
T ss_pred H
Confidence 4
No 93
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.05 E-value=2.2e+02 Score=23.32 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=41.3
Q ss_pred cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 27 DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKN 87 (733)
Q Consensus 27 ~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~ 87 (733)
+.+.+|+.+.+++...--+++.-++. -..|+..+..|+..++..+.++..+-.
T Consensus 8 eal~~LE~IV~~LE~g~l~Leesl~l--------yeeG~~L~k~C~~~L~~ae~kv~~l~~ 60 (75)
T PRK14066 8 TALKKLEEVVKKLEGGELSLDDSLKA--------FEEGVKHAAFCSKKLDEAERRVEVLLK 60 (75)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888888766654 478889999999888888888776654
No 94
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=27.00 E-value=5e+02 Score=23.92 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=48.4
Q ss_pred HHHHHHHhhCCCc-----chhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12595 15 VSKQLLTLLQRSD-----QLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSL 89 (733)
Q Consensus 15 a~~~i~~ll~~p~-----~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~ 89 (733)
++..+-.++.... .++++..+++++......+=..=-.+.-+-+..-+.-+..+.+++..|.++++.+..-+...
T Consensus 23 pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L 102 (142)
T PF04048_consen 23 PVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLL 102 (142)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455554332 46777777777777666654444444444445566777788888999998888887766433
No 95
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=26.95 E-value=31 Score=27.11 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=20.6
Q ss_pred HHHhhhCCCCCHHHHHHHHhhcCCCC
Q psy12595 677 HTLLNKYPDISDDHISRLLTLRGDLS 702 (733)
Q Consensus 677 ~~l~~~ypD~~~~~v~aiL~~R~dl~ 702 (733)
..|..++||.+...++.+...|+|+-
T Consensus 20 e~l~~k~P~at~~~l~~lve~RsdFA 45 (68)
T PF09164_consen 20 ERLRAKLPDATPTELKELVEKRSDFA 45 (68)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHhhHH
Confidence 45788899999999999999998763
No 96
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.67 E-value=2.2e+02 Score=23.26 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=40.8
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 26 SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMK 86 (733)
Q Consensus 26 p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~ 86 (733)
.+.+.+|+.+.+++...--+++.-++. -..|+..+..|+..+++.++++..+-
T Consensus 9 Ee~l~~LE~IV~~LE~~~l~Leesl~~--------ye~G~~L~k~c~~~L~~ae~kv~~l~ 61 (75)
T PRK14064 9 EEAIAELETIVEALENGSASLEDSLDM--------YQKGIELTKLCQDKLQSAEKRMAKVV 61 (75)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888887765554 47888888888888888888877654
No 97
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.20 E-value=1.4e+03 Score=28.93 Aligned_cols=12 Identities=8% Similarity=0.487 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy12595 388 QENYVDWMRKTL 399 (733)
Q Consensus 388 ~~~l~ew~~~~l 399 (733)
..+++.++.++-
T Consensus 495 r~~~~~~l~~~~ 506 (1109)
T PRK10929 495 RRHYHAFLERSS 506 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 444555555443
No 98
>KOG2307|consensus
Probab=26.12 E-value=1e+03 Score=27.29 Aligned_cols=180 Identities=11% Similarity=0.072 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHhcCh---
Q psy12595 424 APVIIFQMIDQNLQLTKD---ISQELTERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVYFTHFMIAMLNNC--- 497 (733)
Q Consensus 424 ~~~dlfqmi~~ql~~a~~---~~~~l~~~v~~~~~~~l~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~liA~~N~~--- 497 (733)
...-.+.-+.+.+..|=. .-+.+..+....-++.+..+- +|-.++.++... +.+.|.-....++++-.+.
T Consensus 415 l~l~as~a~~ealrrcWsddvylp~~vdKl~rltlQlllRys-rwisaitns~gs---~~skp~trtqlvyv~hdd~~ll 490 (705)
T KOG2307|consen 415 LHLGASRAIIEALRRCWSDDVYLPPIVDKLWRLTLQLLLRYS-RWISAITNSFGS---EKSKPATRTQLVYVRHDDGNLL 490 (705)
T ss_pred chhhHhHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHh-HHHHHHHhccCC---CCCCCcchhheeeeecccchHH
Confidence 334445555556655521 112444555555555554443 455566543221 1122222333333332222
Q ss_pred -HHHHHHHHHHHhhhhhccccccccccc----hHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCC-
Q psy12595 498 -LKFVELAHQMKQTFWKRSELHRSDASN----KFEALLKVFE----ELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTS- 567 (733)
Q Consensus 498 -~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~- 567 (733)
..|-++.+.+..++.. +. ..+++ .++.....|+ .+.+.-+..|++..+.+++.+..-=-+=.|-+.
T Consensus 491 qevl~elle~I~~kl~~--~~--k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKe 566 (705)
T KOG2307|consen 491 QEVLPELLESIWGKLHD--IT--KVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKE 566 (705)
T ss_pred HHHhHHHHHHHHhhccc--hh--hhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCC
Confidence 2344555555444421 11 11222 2222223333 345556667777777777544221111234432
Q ss_pred -----chhHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy12595 568 -----TVSIQTICMTLDDYFQDYC-HLVGKNLEFIILEAEELVVTRYIAS 611 (733)
Q Consensus 568 -----~~~v~~I~~t~~dy~~d~~-~l~~~~~~~l~~~~~~~~v~~Yl~~ 611 (733)
++||.+.+.-++.+.+-.+ .|..+.-+.++.....+....|...
T Consensus 567 vPtthSsYVv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~ 616 (705)
T KOG2307|consen 567 VPTTHSSYVVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEK 616 (705)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999988875 5888888888888888888888654
No 99
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.03 E-value=5e+02 Score=23.58 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhHHHHHHHhhCCCcchhhHHHHHHHHHH
Q psy12595 3 TIDQLEKEAKQNVSKQLLTLLQRSDQLEKVNQYKQRIIR 41 (733)
Q Consensus 3 ~~~~~e~~a~~~a~~~i~~ll~~p~~L~kl~~~~~~~~~ 41 (733)
|++.....|+.+=-+|=.++..|.++...|..+|..+..
T Consensus 32 dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~ 70 (132)
T PF07926_consen 32 DLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQE 70 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445555555566666777777777777776666543
No 100
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.88 E-value=1.1e+03 Score=27.41 Aligned_cols=31 Identities=10% Similarity=0.256 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q psy12595 34 QYKQRIIRKKISVETTLKTAMQSQLDGVISG 64 (733)
Q Consensus 34 ~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~g 64 (733)
.++..+.+++..+.......++.+|......
T Consensus 311 ~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~ 341 (582)
T PF09731_consen 311 ELREEFEREREELEEKYEEELRQELKRQEEA 341 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665555555555554443
No 101
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=25.71 E-value=4.8e+02 Score=25.38 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHhhhh-hcCCch
Q psy12595 104 AQNNRHVQYVTAIENLTH-VFAVPD 127 (733)
Q Consensus 104 ~l~~~~~nl~~~~~~l~~-l~~~~~ 127 (733)
++..+|+-+..+....+- |+++|+
T Consensus 133 ~Ia~aR~~YN~av~~yN~~i~~FPs 157 (185)
T COG1704 133 RIAVARRLYNEAVRDYNVKIRSFPS 157 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455556666665555542 455554
No 102
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.34 E-value=1.2e+03 Score=27.79 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhch
Q psy12595 59 DGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKL 99 (733)
Q Consensus 59 ~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~ 99 (733)
..+..-+.-+.+++..+..+++.+.+|+....+...+|+.|
T Consensus 36 ~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 36 GAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVY 76 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 33444556667777777888888888887777776666654
No 103
>PF13864 Enkurin: Calmodulin-binding
Probab=25.32 E-value=3.4e+02 Score=23.24 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchhhhhchHH
Q psy12595 31 KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLE--DMQTIKENIHEMKNSLQVLPPLGLKLSD 101 (733)
Q Consensus 31 kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~--~v~~i~~~l~~i~~~~~~~~~~v~~~~~ 101 (733)
+||.|..+..++.+.=.......++.+. ...|+..|.+... .++.++.+-.++..-++..+..+...+.
T Consensus 2 ~vP~YL~~~k~e~~~e~~~~~~~~~~~~--~~~~~~~l~eeER~~lL~~Lk~~~~el~~ey~~lp~~~DT~~~ 72 (98)
T PF13864_consen 2 KVPKYLKKRKKEIAEEEEEREREEEDQE--CPPGMRLLSEEERQELLEGLKKNWDELNKEYQKLPFSIDTLRK 72 (98)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhHh--CccccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHH
Confidence 3455555554444444444444443333 5577777766544 6777888888888877777766554443
No 104
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.08 E-value=3.5e+02 Score=22.43 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=40.3
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 26 SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMK 86 (733)
Q Consensus 26 p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~ 86 (733)
.+.+.+|+.+.+++...--+++.-++. ...|+..+..|+..++..+.++..+.
T Consensus 10 Eeal~~LEeIV~~LE~~~l~Lees~~l--------yeeG~~L~k~C~~~L~~ae~kI~~l~ 62 (80)
T PRK14067 10 EQQLARLQEIVDALEGGDLPLEESVAL--------YKEGLGLARACREQLAKARNEIRLFT 62 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888887766554 47788888888888888888876654
No 105
>KOG2180|consensus
Probab=24.97 E-value=1.2e+03 Score=27.65 Aligned_cols=108 Identities=12% Similarity=0.189 Sum_probs=75.3
Q ss_pred HhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH----HHHH--
Q psy12595 13 QNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVIS-----GIQELKTVLEDMQT----IKEN-- 81 (733)
Q Consensus 13 ~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~-----gl~~L~~a~~~v~~----i~~~-- 81 (733)
--|+-.+++.|..=.++++|..+..++.+=|.++-.|+...-+++-.|... +++.|.+|=..+.. ++++
T Consensus 155 lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelI 234 (793)
T KOG2180|consen 155 LQAILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELI 234 (793)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHH
Confidence 346777788888888999999999999999999999999988888877666 68888888777763 3333
Q ss_pred -------HHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcC
Q psy12595 82 -------IHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFA 124 (733)
Q Consensus 82 -------l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~ 124 (733)
+.+...++.+++ ....+..++.+...+...+.+.+..+.
T Consensus 235 kwf~~qqL~ey~~IF~en~----E~a~LDkidrRY~wfKr~L~~fe~k~~ 280 (793)
T KOG2180|consen 235 KWFCSQQLEEYEQIFRENE----EAASLDKLDRRYAWFKRLLRDFEEKWK 280 (793)
T ss_pred HHHHHHHHHHHHHHHhccH----hhhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 333334444433 224455566666666666666655443
No 106
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.95 E-value=8.4e+02 Score=25.81 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHHHHHH
Q psy12595 6 QLEKEAKQNVSKQLLT 21 (733)
Q Consensus 6 ~~e~~a~~~a~~~i~~ 21 (733)
+-.+.|++.|+.+.+.
T Consensus 41 Q~~EQAr~~A~~fA~~ 56 (301)
T PF06120_consen 41 QNAEQARQEAIEFADS 56 (301)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4456677777766543
No 107
>KOG1086|consensus
Probab=24.76 E-value=6.3e+02 Score=27.90 Aligned_cols=57 Identities=16% Similarity=0.404 Sum_probs=39.4
Q ss_pred HHHHhhC--CCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 18 QLLTLLQ--RSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEM 85 (733)
Q Consensus 18 ~i~~ll~--~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i 85 (733)
-++++|+ ||+||..-..+.+.+.++- +..++.+..-+.+|.++.+.++.+.+-+.+-
T Consensus 177 lL~rLLkSn~PeDLqaANkLIK~lVkee-----------e~k~eKiskR~~aleev~n~vk~l~em~l~~ 235 (594)
T KOG1086|consen 177 LLARLLKSNHPEDLQAANKLIKTLVKEE-----------EHKLEKISKRVKALEEVNNNVKLLEEMLLDY 235 (594)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778887 7999986655555543322 3356667777888888888888887766543
No 108
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.64 E-value=3.5e+02 Score=22.19 Aligned_cols=53 Identities=11% Similarity=0.291 Sum_probs=40.7
Q ss_pred cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 27 DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKN 87 (733)
Q Consensus 27 ~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~ 87 (733)
+.+.+|+.+.+++...--+++.-++. -..|+..+..|+..++..+.++..+-.
T Consensus 10 eal~~Le~IV~~LE~gdl~Leesl~l--------yeeG~~L~k~C~~~L~~ae~kv~~l~~ 62 (76)
T PRK14068 10 EMMQELEQIVQKLDNETVSLEESLDL--------YQRGMKLSAACDTTLKNAEKKVNDLIK 62 (76)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888888888888887765554 478889999999888888888777654
No 109
>KOG0964|consensus
Probab=24.61 E-value=1.4e+03 Score=28.26 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=16.4
Q ss_pred CChhhHHHHHHHHhcHHHHHHHHHHHH
Q psy12595 168 QSMADKLLLQDYFSDVEKVSQLLEKQI 194 (733)
Q Consensus 168 ~~~~~~~~l~~~f~~v~~l~~~l~~~l 194 (733)
-++++...+...-..|+.+...|....
T Consensus 779 Lt~ee~e~l~kLn~eI~~l~~kl~~~~ 805 (1200)
T KOG0964|consen 779 LTPEELERLSKLNKEINKLSVKLRALR 805 (1200)
T ss_pred cCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456666667666666666666555443
No 110
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.21 E-value=2.8e+02 Score=23.89 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=43.0
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 26 SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKN 87 (733)
Q Consensus 26 p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~ 87 (733)
.+.|.+|+.+.+++...--+++.-++. -..|+..+..|+..+++.+.++..+..
T Consensus 11 Eeal~~LEeIV~~LEsgdl~LEesl~l--------yeeGv~L~k~C~~~L~~AE~kV~~L~~ 64 (95)
T PRK14069 11 EDALRELEQIAEKLERQDFSLEESLKA--------YERGMELKKICSGILDDAEGKIEALTK 64 (95)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778888888888888888766554 478899999999999999988877754
No 111
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.10 E-value=3.3e+02 Score=20.85 Aligned_cols=26 Identities=4% Similarity=0.350 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 53 AMQSQLDGVISGIQELKTVLEDMQTI 78 (733)
Q Consensus 53 ~v~~ql~~~~~gl~~L~~a~~~v~~i 78 (733)
.++++.+.++..++.+.+.-+++-.|
T Consensus 18 tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 18 TVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444433
No 112
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=24.00 E-value=8.4e+02 Score=25.48 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=22.6
Q ss_pred HHHHHHhhhhhcCCchHHHHHHhhhhcCchHHHHHHHH
Q psy12595 112 YVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLM 149 (733)
Q Consensus 112 l~~~~~~l~~l~~~~~~v~~l~~ll~~~~LL~ah~~L~ 149 (733)
|...-..|.+|.+--.-|++++..-.+...|..|--|.
T Consensus 77 L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~Flr 114 (324)
T PF12126_consen 77 LGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLR 114 (324)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33344446677776666777766665555665555544
No 113
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.42 E-value=7.2e+02 Score=24.49 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhc
Q psy12595 67 ELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVF 123 (733)
Q Consensus 67 ~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~ 123 (733)
+|+.-..++.++...+.++-+.|...-. --+..+.+-++|..++..+.+-+
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~~~~~~------ag~~~~~a~~~F~~~L~~~~~~~ 53 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVD------SGKTYVNANSLFVNSLNDLSDYF 53 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhccc
Confidence 3555566777777777777777765332 33456667778888887776643
No 114
>PF02650 HTH_WhiA: WhiA C-terminal HTH domain; InterPro: IPR023054 This domain is found at the C terminus of the sporulation regulator WhiA. It is predicted to form a DNA binding helix-turn-helix structure []. ; PDB: 3HYI_A.
Probab=23.32 E-value=2.7e+02 Score=23.36 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=27.7
Q ss_pred hHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy12595 672 LSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQ 714 (733)
Q Consensus 672 i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l~ 714 (733)
-..++..+...|||.|...+..++.- .+||+-...-+..++
T Consensus 41 ~l~~~a~lRl~~Pd~SL~EL~~~~~~--~iSKSgvnhrlrKl~ 81 (85)
T PF02650_consen 41 KLREFAELRLENPDASLKELGELLEP--PISKSGVNHRLRKLK 81 (85)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHTT----T--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCccccHHHHHHHHcC--cCcHHHHHHHHHHHH
Confidence 34456778889999999999999986 589998888777654
No 115
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.55 E-value=7.6e+02 Score=24.41 Aligned_cols=48 Identities=10% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhh
Q psy12595 68 LKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTH 121 (733)
Q Consensus 68 L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~ 121 (733)
|.....+|.++...|.++-+.|...- .--+..+.+-++|...+..+.+
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~------~agk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGML------EGGRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677777777777777776533 3345677888888888888766
No 116
>PHA03386 P10 fibrous body protein; Provisional
Probab=22.38 E-value=1.9e+02 Score=24.51 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12595 45 SVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQ 90 (733)
Q Consensus 45 ~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~ 90 (733)
+++++. +++|.|+++++...+.|..--..+..+..++.+|.....
T Consensus 16 avd~KV-daLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 16 EVDTKV-DALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHhhHH-HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 444443 345666666666655555555555556666666665544
No 117
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=22.07 E-value=7.3e+02 Score=24.03 Aligned_cols=104 Identities=21% Similarity=0.217 Sum_probs=50.6
Q ss_pred chHHHHHHHHHhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 3 TIDQLEKEAKQNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAM-QSQLDGVISGIQELKTVLEDMQTIKEN 81 (733)
Q Consensus 3 ~~~~~e~~a~~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v-~~ql~~~~~gl~~L~~a~~~v~~i~~~ 81 (733)
++-.....||+.|..|+..+-|.--+ +.+=...+..+-.+--..|...+ +...++...+++.| +..
T Consensus 52 ~l~~~q~~ak~ha~~w~d~~~P~ii~---~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L----------~~~ 118 (184)
T PF05791_consen 52 DLVQHQKTAKEHAKEWLDTIKPQIID---LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDL----------QDQ 118 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHH----------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHH----------HHH
Confidence 45667788999999999998744333 33333333333344444444444 22223333333333 333
Q ss_pred HHHHHHHhccchhhhhchHHHH-HHHHHHHhHHHHHHhhhhh
Q psy12595 82 IHEMKNSLQVLPPLGLKLSDLR-AQNNRHVQYVTAIENLTHV 122 (733)
Q Consensus 82 l~~i~~~~~~~~~~v~~~~~ik-~l~~~~~nl~~~~~~l~~l 122 (733)
+..+...++. ++..+.+.+ ++..-+++|.+....+..+
T Consensus 119 i~~~q~~~~~---~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 119 IQKNQDKVQA---LINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333333332 332222222 3555566666666555443
No 118
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=21.86 E-value=9.4e+02 Score=26.23 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhh
Q psy12595 75 MQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWIS 137 (733)
Q Consensus 75 v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~ 137 (733)
+..+...+.++.....+ +.+..+-...+.+...+..+...++.++.+...-..++.+..+++
T Consensus 25 l~~~~~~~~~l~~~l~~-p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~ 86 (367)
T PRK00578 25 VDALKERLEELEAEAED-PDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAE 86 (367)
T ss_pred HHHHHHHHHHHHHHhcC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666677766654 555566777788888888888888888887776666666666653
No 119
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.53 E-value=5.2e+02 Score=22.56 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=34.2
Q ss_pred HHHHHHhhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 36 KQRIIRKKISVET-----TLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMK 86 (733)
Q Consensus 36 ~~~~~~~~~~vd~-----~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~ 86 (733)
-.++..|++.+++ .+...+..|+++...-+..|.+.-..|..+-.+-..|-
T Consensus 3 ~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~ 58 (103)
T PF08654_consen 3 QARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVF 58 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHH
Confidence 3455666666665 56667777888888888888777777776665554443
No 120
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.30 E-value=4.4e+02 Score=21.21 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12595 30 EKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQ 90 (733)
Q Consensus 30 ~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~ 90 (733)
.+|+.+.+++...--+++.-++. -..|+..+..|+..+.....++..+-....
T Consensus 2 ~~LEeIV~~LE~gel~Leesl~l--------yeeG~~L~k~C~~~L~~aE~kI~~l~~e~~ 54 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESIKL--------FERGVELYRKCKEILQQNRLKIIDVMKELE 54 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777788888777777766554 478899999999988888888876554433
No 121
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=21.21 E-value=5.1e+02 Score=25.80 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=50.6
Q ss_pred HHHHHhHHHHHHHhhC---C-CcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 9 KEAKQNVSKQLLTLLQ---R-SDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHE 84 (733)
Q Consensus 9 ~~a~~~a~~~i~~ll~---~-p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~ 84 (733)
++|.+...++++++-. . |+.++.++.++.-...+..+.+.-+...-....+.+..-+.. ..++.-+.+++.-+.+
T Consensus 83 ~~a~~~~~~~~~~l~~l~~d~p~~~~~l~~l~~~i~~~l~~~~~~i~~~r~~~~eaa~~ii~s-~~Gk~lm~~ir~~l~~ 161 (207)
T COG5278 83 EEATEELDQKLEELRALTADDPELLESLDDLEPLIQWKLAEADETIPLRRDGKLEAAVQIISS-DQGKVLMDAIRQYLQE 161 (207)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 3555555555555544 4 666789999999999999999988887776666666555554 4444444555555545
Q ss_pred HH
Q psy12595 85 MK 86 (733)
Q Consensus 85 i~ 86 (733)
|.
T Consensus 162 i~ 163 (207)
T COG5278 162 IE 163 (207)
T ss_pred HH
Confidence 44
No 122
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=21.15 E-value=6.1e+02 Score=24.88 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=12.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 40 IRKKISVETTLKTAMQSQLDGVISGIQELKTV 71 (733)
Q Consensus 40 ~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a 71 (733)
.++|.-.+.+| .-+.+|+..+..-+..+..|
T Consensus 73 LkrKK~~E~ql-~q~~~ql~nLEq~~~~iE~a 103 (191)
T PTZ00446 73 LKRKKLYEQEI-ENILNNRLTLEDNMINLENM 103 (191)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 23334444444333333333
No 123
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=21.07 E-value=40 Score=19.60 Aligned_cols=9 Identities=44% Similarity=1.169 Sum_probs=6.8
Q ss_pred cCcCccccc
Q psy12595 299 LCGPCFPPH 307 (733)
Q Consensus 299 ~~~~~fPp~ 307 (733)
.+.|||||-
T Consensus 5 dlrpcyppc 13 (22)
T PF08121_consen 5 DLRPCYPPC 13 (22)
T ss_pred ccccCCCCc
Confidence 467999984
No 124
>KOG1656|consensus
Probab=21.03 E-value=3.6e+02 Score=26.55 Aligned_cols=11 Identities=27% Similarity=0.193 Sum_probs=6.1
Q ss_pred HHHHHhhhhcC
Q psy12595 129 VERTKQWISEG 139 (733)
Q Consensus 129 v~~l~~ll~~~ 139 (733)
.+++.+.|..+
T Consensus 140 a~eIseAiS~P 150 (221)
T KOG1656|consen 140 AEEISEAISAP 150 (221)
T ss_pred HHHHHHHHhCc
Confidence 35555666554
No 125
>PF00522 VPR: VPR/VPX protein; InterPro: IPR000012 Human immunodeficiency virus (HIV) is the human retrovirus associated with AIDS (acquired immune deficiency syndrome), and SIV its simian counterpart. Three main groups of primate lentivirus are known, designated Human immunodeficiency virus 1 (HIV-1), Human immunodeficiency virus 2 (HIV-2)/Simian immunodeficiency virus - mac (SIVMAC)/Simian immunodeficiency virus - sm (SIVSM) and Simian immunodeficiency virus - agm (SIVAGM). Simian immunodeficiency virus - mnd (SIVMND) has been suggested to represent a fourth distinct group []. These groups are believed to have diverged from a common ancestor long before the spread of AIDS in humans. Genetic variation in HIV-1 and HIV-2 has been studied extensively, and the nucleotide sequences reported for several strains []. ORF analysis has revealed two open reading frames, yielding the so-called R- and X-ORF proteins, which show a high degree of sequence similarity. Vpx plays a role in nuclear translocation of the viral pre-integration complex (PIC) and is thus required for the virus to infect non-dividing cells. Vpr also plays a role in nuclear translocation of the (PIC) and may target specific host proteins for degradation by the 26S proteasome. It acts by associating with the cellular CUL4A-DDB1 E3 ligase complex through direct interaction with host VPRPB/DCAF-1. This would result in cell cycle arrest or apoptosis in infected cells, creating a favourable environment for maximizing viral expression and production by rendering the HIV-1 LTR transcription more active.; GO: 0019058 viral infectious cycle, 0042025 host cell nucleus; PDB: 1VPC_A 1X9V_B 1ESX_A 1CEU_A 1M8L_A 1DSJ_A 1BDE_A 1DSK_A 1FI0_A.
Probab=20.94 E-value=1.4e+02 Score=25.61 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHhcCcCcccccc--chHHHHHHHHH
Q psy12595 287 QLILEDLRVVTTLCGPCFPPHY--NIVTSFMRMYH 319 (733)
Q Consensus 287 ~~i~~dL~~v~~~~~~~fPp~~--~I~~~y~~~yh 319 (733)
.|+.+-|..++...+..||+.| .+.+.....||
T Consensus 20 eWl~~~Leelk~EAvrHFpr~~L~~lgq~i~e~~g 54 (96)
T PF00522_consen 20 EWLLELLEELKEEAVRHFPREWLFGLGQYIYETYG 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHSTCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHhhHHhhccC
Confidence 3444455556677788899998 66666666663
No 126
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=20.88 E-value=6.2e+02 Score=22.80 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhcCCCccC-CCchhHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy12595 535 ELRNDSAQYLLEEAFLDLLPHFQDLMTAKWL-TSTVSIQTICMTLDDYFQDYC-HLVGKNLEFIILEAEELVVTRYIASM 612 (733)
Q Consensus 535 ~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~-~~~~~v~~I~~t~~dy~~d~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l 612 (733)
.+.+.|+..|-. ..++-..|+ +..+.== ..+.+|..|+.=+.+|...+. .+.+.....++..+...+...|....
T Consensus 3 ~l~~~c~~~L~~--v~~Ip~~YR-~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~ 79 (125)
T PF12022_consen 3 SLTERCVEPLKQ--VRSIPRQYR-MTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIA 79 (125)
T ss_pred HHHHHHHHHHHH--HhhhHHHhh-ccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666543 344444554 2222211 123689999999999999995 57899999999999999998888775
No 127
>KOG0994|consensus
Probab=20.88 E-value=1.8e+03 Score=28.07 Aligned_cols=174 Identities=13% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHhHHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 1 MSTIDQLEKEAKQNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKE 80 (733)
Q Consensus 1 ~~~~~~~e~~a~~~a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~ 80 (733)
|.++.++=++|..+-..-=..+=+...++.-..++..++..+.++.+..+.++-+. |.+--..|.+++.
T Consensus 1565 ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~-----------~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQ-----------LGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcC--chHHHHHHHHHHHHHHHHH
Q psy12595 81 NIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEG--KLLHAHQSLMDLEKSRDEL 158 (733)
Q Consensus 81 ~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~--~LL~ah~~L~~LE~~rd~~ 158 (733)
+.......+...+.. +..++..-..+...++ .+.+..+....+++++ .-..|-.+.-.|.+--.++
T Consensus 1634 ~~~qns~~A~~a~~~---------a~sa~~~A~~a~q~~~---~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1634 KAAQNSAEAKQAEKT---------AGSAKEQALSAEQGLE---ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHhccHHHHHHHHH---------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q ss_pred HHHHhhccCCChhhHHHHH-------HHHhcHHHHHHHHHHHHHHHHHHH
Q psy12595 159 MYETHKLSGQSMADKLLLQ-------DYFSDVEKVSQLLEKQIKLILSRT 201 (733)
Q Consensus 159 l~e~~~~~~~~~~~~~~l~-------~~f~~v~~l~~~l~~~l~~~~~~~ 201 (733)
+.++.. -.+++..|. .+..+.....+.|++.+..+..++
T Consensus 1702 l~~a~~----kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1702 LGQANE----KLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
No 128
>KOG0993|consensus
Probab=20.60 E-value=1.1e+03 Score=25.74 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=11.7
Q ss_pred hhcCCchHHHHHHhhhhc
Q psy12595 121 HVFAVPDSVERTKQWISE 138 (733)
Q Consensus 121 ~l~~~~~~v~~l~~ll~~ 138 (733)
.-+++|..|+++..++..
T Consensus 403 e~~~lp~ave~l~ql~~~ 420 (542)
T KOG0993|consen 403 EVQNLPAAVEQLAQLYKQ 420 (542)
T ss_pred hhhcchhhHHHHHHHHHH
Confidence 345677777777766544
No 129
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=20.35 E-value=4.5e+02 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHH
Q psy12595 31 KVNQYKQRIIRKKISVETTLKTAMQ 55 (733)
Q Consensus 31 kl~~~~~~~~~~~~~vd~~Lk~~v~ 55 (733)
+|.....++..+...++.+++..++
T Consensus 12 ~L~~~~~~le~~i~~~~~~~k~~~~ 36 (171)
T PF03357_consen 12 RLEKQIKRLEKKIKKLEKKAKKAIK 36 (171)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666654
Done!