Query psy12595
Match_columns 733
No_of_seqs 147 out of 412
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 23:19:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fji_1 Exocyst complex compone 100.0 5.4E-60 1.8E-64 517.9 36.6 358 368-732 1-392 (399)
2 3swh_A MUNC13-1, protein UNC-1 98.7 4.3E-06 1.5E-10 87.8 27.0 259 376-649 11-302 (341)
3 3ns4_A Vacuolar protein sortin 98.6 6.6E-07 2.3E-11 87.7 13.6 120 589-715 20-177 (271)
4 3hr0_A COG4; conserved oligome 98.4 1.7E-05 5.7E-10 80.2 21.1 215 488-709 20-261 (263)
5 3fhn_A Protein transport prote 96.8 1.1 3.7E-05 51.0 40.1 178 524-712 502-699 (706)
6 2f6h_X Myosin-2, type V myosin 91.1 14 0.00047 39.6 20.0 179 530-715 144-350 (419)
7 3mmi_A Myosin-4; globular tail 90.4 19 0.00066 37.7 30.1 182 528-717 136-336 (386)
8 1otr_A Protein CUE2; protein-p 74.3 3.3 0.00011 29.7 3.7 39 672-711 4-43 (49)
9 3iv1_A Tumor susceptibility ge 68.8 33 0.0011 27.0 8.6 48 43-90 5-52 (78)
10 3vkg_A Dynein heavy chain, cyt 65.4 3.1E+02 0.011 37.1 22.0 188 25-231 1893-2091(3245)
11 2dhy_A CUE domain-containing p 63.4 4.7 0.00016 31.0 2.8 40 671-711 17-57 (67)
12 1wgl_A TOLL-interacting protei 58.3 15 0.00052 27.4 4.8 41 670-711 7-48 (59)
13 2etd_A LEMA protein; bromodoma 54.6 89 0.003 28.7 10.5 25 104-128 118-143 (171)
14 1p3q_Q VPS9P, vacuolar protein 54.0 11 0.00038 27.5 3.3 27 673-699 13-39 (54)
15 2l3l_A Tubulin-specific chaper 50.3 64 0.0022 27.4 8.0 40 29-68 30-70 (111)
16 1s35_A Beta-I spectrin, spectr 41.1 2.2E+02 0.0076 26.3 14.5 66 25-95 28-95 (214)
17 2a2f_X Exocyst complex compone 39.2 3.2E+02 0.011 27.7 23.0 109 533-646 178-292 (325)
18 1gqe_A Release factor 2, RF2; 38.6 2.2E+02 0.0077 29.4 11.5 63 74-137 26-88 (365)
19 4fla_A Regulation of nuclear P 37.7 2.2E+02 0.0077 25.4 12.7 121 59-195 25-145 (152)
20 3ls0_A SLL1638 protein, PSBQ; 37.5 1.4E+02 0.0049 26.0 8.3 88 24-122 17-125 (133)
21 3n1e_A Vacuolar protein sortin 35.4 2.3E+02 0.008 25.0 12.4 82 563-650 42-130 (141)
22 2di0_A Activating signal coint 34.3 55 0.0019 25.3 4.6 42 670-711 11-52 (71)
23 2odv_A Plectin 1, HD1; plakin 32.5 73 0.0025 31.0 6.4 84 29-114 123-211 (235)
24 4aj5_1 SKA3, spindle and kinet 31.4 2.2E+02 0.0075 23.4 9.4 65 570-647 36-101 (101)
25 4fla_A Regulation of nuclear P 29.7 3E+02 0.01 24.6 11.0 22 101-122 129-150 (152)
26 1oxz_A ADP-ribosylation factor 28.6 3.6E+02 0.012 25.0 12.4 26 17-42 36-63 (186)
27 3fb2_A Spectrin alpha chain, b 28.3 3.6E+02 0.012 25.0 14.0 65 25-96 41-108 (218)
28 3tul_A Cell invasion protein S 27.6 1.6E+02 0.0056 25.9 6.9 61 31-91 21-87 (158)
29 1yku_A Hypothetical protein PX 26.3 1.9E+02 0.0065 25.2 7.1 87 16-102 47-134 (136)
30 1vp7_A Exodeoxyribonuclease VI 26.1 1.9E+02 0.0066 23.9 6.8 52 27-86 34-85 (100)
31 1o3x_A ADP-ribosylation factor 24.4 3.6E+02 0.012 23.7 9.0 24 18-41 12-37 (140)
32 3okq_A BUD site selection prot 24.2 3.7E+02 0.012 23.6 9.1 74 20-93 24-100 (141)
33 1deq_A Fibrinogen (alpha chain 22.7 4.9E+02 0.017 26.9 10.5 29 26-54 104-133 (390)
34 3d5a_X RF1, peptide chain rele 22.4 3.1E+02 0.011 28.2 9.1 63 74-137 4-66 (354)
35 3pmd_A Conserved domain protei 21.8 2.2E+02 0.0076 25.3 6.7 90 15-104 49-139 (153)
36 3zsu_A TLL2057 protein, cyanoq 21.7 4E+02 0.014 23.1 9.4 88 24-122 15-122 (130)
37 1ceu_A Protein (HIV-1 regulato 21.0 36 0.0012 24.4 1.3 22 287-308 17-38 (51)
38 2iak_A Bullous pemphigoid anti 20.5 4.2E+02 0.014 24.8 9.5 13 26-38 49-61 (224)
No 1
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-60 Score=517.93 Aligned_cols=358 Identities=18% Similarity=0.251 Sum_probs=325.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhhHH-
Q psy12595 368 GPVLKEEVIKELENKYFKYIQENYVDWMRKTLETEKEDWK-SCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQE- 445 (733)
Q Consensus 368 ~plL~~~~~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~w~-~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~~~- 445 (733)
||||+++.++.|+++|++.++++|.+||.|+++.|+++|. |+.+|+.|.+|+|+|++|+|+|+||++|+++|..++.+
T Consensus 1 ~~ll~~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~ 80 (399)
T 2fji_1 1 GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAK 80 (399)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHHHHHHHHHHHHHhCCCcc
Confidence 6999999999999999999999999999999999999999 99999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cc-------ccccchhhHHHHHHhcChHHHHHHHHHHHhhh
Q psy12595 446 LTERILLLSVEHVTEYGKMSKDALKELKVEHF-------KD-------RSKMVYFTHFMIAMLNNCLKFVELAHQMKQTF 511 (733)
Q Consensus 446 l~~~v~~~~~~~l~~f~~~~~~~l~~~~~~~~-------~~-------~~~~~~~~e~liA~~N~~~~~~~~~~~l~~~~ 511 (733)
+..+|+..|+++|..|+..|++.+.++.++|+ ++ .+.++++++|+||++|||..|.++++++..++
T Consensus 81 l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~liA~~Nn~~~~~e~~~~l~~~~ 160 (399)
T 2fji_1 81 ILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKY 160 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCccccccccHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887776 33 24567899999999999999999999999998
Q ss_pred hhcccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCCchhHHHHHHHHHHHHHhh-hhh
Q psy12595 512 WKRSEL--HRSDASNKFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDY-CHL 588 (733)
Q Consensus 512 ~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~~~v~~I~~t~~dy~~d~-~~l 588 (733)
.+ .++ |.+.....++.+.++|.++++.|++.|++.||.||+|+|+++||++||+++ +|++||.|++||++|| .+|
T Consensus 161 ~~-~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~~-~v~~i~~ti~dy~~d~~~~L 238 (399)
T 2fji_1 161 GK-LVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGS-QAQQIADTLDEYLLDIKPQM 238 (399)
T ss_dssp HT-TSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTCC-HHHHHHHHHHHHHHHHGGGS
T ss_pred HH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhcCCc-HHHHHHHHHHHHHHHHHHHh
Confidence 74 332 111123467788899999999999999999999999999999999999988 8999999999999999 689
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------CchhHHHHHH
Q psy12595 589 VGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID-------APLDCILALS 661 (733)
Q Consensus 589 ~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~-------~~~~~l~~l~ 661 (733)
+|++|+.|+++++++++.+|+++|++ +.+|++. |+.++++|.+|++.++.||.++++..+ +.+.+|+.|+
T Consensus 239 ~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~--~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~ 315 (399)
T 2fji_1 239 NSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNK--NNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFM 315 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCG--GGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCch--hHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999987 789999999999999999999998553 7788999999
Q ss_pred HHhccCCC-chhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHHHH------hc-cCCCCCCcCCccccCC
Q psy12595 662 EVLKNEDS-EMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQ------KT-KANRRFSYSKSLFHKI 732 (733)
Q Consensus 662 eli~~~d~-~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~l~------~~-~~~~~~~~~~tifs~i 732 (733)
+ |+ +|| +++.++|.+|+..|||++.+||++||.+|||++|++++++++.++ .. .+..+.+..|||||++
T Consensus 316 ~-L~-~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k~ll~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 392 (399)
T 2fji_1 316 D-LS-CEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVDREPTLMRRF 392 (399)
T ss_dssp H-HH-HSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCGGGGC
T ss_pred H-hc-CCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhHHHHhhccccCCCCchhhhh
Confidence 9 99 588 999999999999999999999999999999999999999999973 22 1223456788999987
No 2
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=98.73 E-value=4.3e-06 Score=87.82 Aligned_cols=259 Identities=12% Similarity=0.139 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHhhh-H--HHHHHHHH
Q psy12595 376 IKELENKYFKYIQENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDIS-Q--ELTERILL 452 (733)
Q Consensus 376 ~~~L~~~Y~~~~~~~l~ew~~~~l~~e~~~w~~~~~P~~d~dg~~~t~~~~dlfqmi~~ql~~a~~~~-~--~l~~~v~~ 452 (733)
+.+....++.....+..+|+.++++.|+.+ +-+...++..+|++.+|+|.+++|.++.-..+. + ....++..
T Consensus 11 F~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~-----~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t 85 (341)
T 3swh_A 11 FEPFVIQWLDENEEVSRDFLHGALERDKKD-----GFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMR 85 (341)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----CccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 578899999999999999999999988752 112123566899999999999999999887665 2 22223333
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhcccccccchhhHHHHHHhcChHHHHHHHHHHHhhhhhccccccccccchHHHHHH
Q psy12595 453 LSVEHVTEYGKMSKDAL-KELKVEHFKDRSKMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSDASNKFEALLK 531 (733)
Q Consensus 453 ~~~~~l~~f~~~~~~~l-~~~~~~~~~~~~~~~~~~e~liA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (733)
...+.+....-.|-+.+ .+|. .+..+ . + ...+|.++||....+...+.+.+....... ++......+.+..
T Consensus 86 ~l~~~i~~~~~~Y~~~l~~~~~-~~~~~-e---~-~~~~Cv~lNNie~lR~~L~~l~~~l~~~~l--~~~~~~~~~~lq~ 157 (341)
T 3swh_A 86 RFAKTISNVLLQYADIVSKDFA-SYCSK-E---K-EKVPCILMNNTQQLRVQLEKMFEAMGGKEL--DAEASGTLKELQV 157 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHCCT-T---S-CHHHHHHHHHHHHHHHHHHHHHHHTTTTTS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhhh-h---c-ccchhhhcccHHHHHHHHHHHHHhcchhhH--HHHHHHHHHHHHH
Confidence 33444444444455544 2222 22111 1 1 245899999999999888888765532111 1222234455666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhcC-------------CCccCCCc----hhHHHHHHHHHHHHHhhh-hhhhhhH
Q psy12595 532 VFEELRNDSAQYLLEEAFLDLLPHFQDLM-------------TAKWLTST----VSIQTICMTLDDYFQDYC-HLVGKNL 593 (733)
Q Consensus 532 ~~~~l~~~~~~~L~~~i~~dl~p~~~~lf-------------t~~W~~~~----~~v~~I~~t~~dy~~d~~-~l~~~~~ 593 (733)
.+..+..+....+.+.+..+++.+.+.|. ...|-... +.+.-+..-+++.+.-+. .+....|
T Consensus 158 ~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f 237 (341)
T 3swh_A 158 KLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVL 237 (341)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555555554444432 12353222 344555555666666564 4788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCc--ccc---------cCHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy12595 594 EFIILEAEELVVTRYIASMLQKK--VIF---------KNYEERKAAAEKIVKETKQLKNLFSKYTTN 649 (733)
Q Consensus 594 ~~l~~~~~~~~v~~Yl~~l~~~~--~~~---------k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~ 649 (733)
..++..+-..++......+.-.. .++ |+.. ......+..+.+.|++||-.-|..
T Consensus 238 ~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~--~~~~~~l~~~L~~L~~fFhA~G~G 302 (341)
T 3swh_A 238 KRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLT--PKQCAVVELALDTIKQYFHAGGVG 302 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC------------CTTHHHHHHHHHHHHHHHHGGGTS
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCC--HHHHHHHHHHHHHHHHHhccCCCC
Confidence 88888888888777777651000 000 1111 356789999999999999987754
No 3
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=98.56 E-value=6.6e-07 Score=87.75 Aligned_cols=120 Identities=11% Similarity=0.148 Sum_probs=98.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCH---------------HHHHH-HHHHHHHHHHHHHHHHhhccCCCC-
Q psy12595 589 VGKNLEFIILEAEELVVTRYIASMLQKKVIFKNY---------------EERKA-AAEKIVKETKQLKNLFSKYTTNID- 651 (733)
Q Consensus 589 ~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~---------------~~~~~-~a~~i~~D~~~l~~~F~~~~s~~~- 651 (733)
++.|+..||+++.+.++..|+.+|.+ .||+. . .. +||||+.|++.|+++|.++++...
T Consensus 20 R~~Y~rnFcDK~ve~~~~~Fi~~Ii~---~ckPi~pf~~~~~~rk~~~~s--~v~gaEQLLLD~~sLK~~Ll~LP~~~~~ 94 (271)
T 3ns4_A 20 RDVYKWNFLDKVIDIMTTNFVSNTIR---LLQPVPPFSLAGSKRKFETRT--VVNIGEQLLLDLELLKEIFHTLPESVSN 94 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCCSSCSSSSCSCSSCHHH--HHHHHHHHHHHHHHHHHHHHHGGGGGCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HheeCcccccccccccccccc--cchhHHHHHHHHHHHHHHHHHccccccc
Confidence 88999999999999999999999942 23333 3 55 999999999999999999876321
Q ss_pred ------------------CchhHHHHHHHHhccCCCchhHHHHHHHhhhCCC-CCHHHHHHHHhhcCCC--CHHHHHHHH
Q psy12595 652 ------------------APLDCILALSEVLKNEDSEMLSLDLHTLLNKYPD-ISDDHISRLLTLRGDL--SRQEIRDIV 710 (733)
Q Consensus 652 ------------------~~~~~l~~l~eli~~~d~~~i~~~~~~l~~~ypD-~~~~~v~aiL~~R~dl--~r~e~~~il 710 (733)
..+.-++.|..++. .+.+.....+.+|....|| .+...+..||++|| + +.++.+...
T Consensus 95 ~~~~~~~ts~~sytK~V~~~~~kle~lLKvLm-~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LKG-v~wdl~~wk~~~ 172 (271)
T 3ns4_A 95 DSDLRENTSYKRVKRHADNNIDQLLKFIKLLM-APLDSADDYYETYSKLTNNNPDSAVWSFVLALKG-IPWDLALWKKMW 172 (271)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHT-CCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHT-CCSCHHHHHHHH
T ss_pred ccccCCCcccchhhhHHhhhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 33455666777776 5566677778999999999 99999999999999 7 588999999
Q ss_pred HHHHh
Q psy12595 711 LYVQK 715 (733)
Q Consensus 711 ~~l~~ 715 (733)
+.++.
T Consensus 173 ~~f~l 177 (271)
T 3ns4_A 173 SAYNL 177 (271)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99654
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=98.45 E-value=1.7e-05 Score=80.23 Aligned_cols=215 Identities=14% Similarity=0.153 Sum_probs=153.1
Q ss_pred HHHHHHhcChHHHHHHHHHHHhhhhhcccc-cc----ccc-c-------chHHHHHHHHHHHHHHHHHHHH-HHHHhhhH
Q psy12595 488 HFMIAMLNNCLKFVELAHQMKQTFWKRSEL-HR----SDA-S-------NKFEALLKVFEELRNDSAQYLL-EEAFLDLL 553 (733)
Q Consensus 488 e~liA~~N~~~~~~~~~~~l~~~~~~~~~~-~~----~~~-~-------~~~~~~~~~~~~l~~~~~~~L~-~~i~~dl~ 553 (733)
-..|.++||-..|.+|+.++.+.+.+.... +. .+. . ..+....+.|.++.+.+++.|. +.+-..++
T Consensus 20 ~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikprLr 99 (263)
T 3hr0_A 20 MSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKPQVQ 99 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345788899999999999887655432111 11 110 0 1223344455677777888887 45666889
Q ss_pred HHhhhcCCCccCCCc----------hhHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCH
Q psy12595 554 PHFQDLMTAKWLTST----------VSIQTICMTLDDYFQDYC-HLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNY 622 (733)
Q Consensus 554 p~~~~lft~~W~~~~----------~~v~~I~~t~~dy~~d~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~ 622 (733)
|.+..+++...+-.+ +.+...+...+..+..|+ .|.+..|..|+.-+...++..-=+.++++ +|.
T Consensus 100 ~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~~--~fn-- 175 (263)
T 3hr0_A 100 PWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKS--TFN-- 175 (263)
T ss_dssp HHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTC--CBC--
T ss_pred HHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHhC--CcC--
Confidence 999888877665442 247888999999999996 58999999999877776555444455543 343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHHHHHHHHhccCCCchhHHHHHHHhh-hCCCCCHHHHHHHHhhcCC
Q psy12595 623 EERKAAAEKIVKETKQLKNLFSKYTTNI-DAPLDCILALSEVLKNEDSEMLSLDLHTLLN-KYPDISDDHISRLLTLRGD 700 (733)
Q Consensus 623 ~~~~~~a~~i~~D~~~l~~~F~~~~s~~-~~~~~~l~~l~eli~~~d~~~i~~~~~~l~~-~ypD~~~~~v~aiL~~R~d 700 (733)
.-+|=++-+|+..+..+|...+... ...|..+..|+-++.+.+++.+...+..-.. .-|.++++.+..++.+|-|
T Consensus 176 ---~lGal~LdrDvr~li~~~~~~~~~~lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~il~lRvD 252 (263)
T 3hr0_A 176 ---RLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRID 252 (263)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTSCTTHHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHHHHTTBTT
T ss_pred ---chhHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHHHHHhhcc
Confidence 7799999999999999998754422 2677888889999999888766444332211 3468999999999999999
Q ss_pred CCHHHHHHH
Q psy12595 701 LSRQEIRDI 709 (733)
Q Consensus 701 l~r~e~~~i 709 (733)
++..+++.+
T Consensus 253 f~~e~I~~l 261 (263)
T 3hr0_A 253 FRSEDIKRL 261 (263)
T ss_dssp SCHHHHHHC
T ss_pred CCHHHHHhc
Confidence 999988753
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=96.80 E-value=1.1 Score=51.04 Aligned_cols=178 Identities=12% Similarity=0.133 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHhhhcCC-CccCCC--------------chhHHHHHHHHHHHHHhhh-
Q psy12595 524 NKFEALLKVFEELRND-SAQYLLEEAFLDLLPHFQDLMT-AKWLTS--------------TVSIQTICMTLDDYFQDYC- 586 (733)
Q Consensus 524 ~~~~~~~~~~~~l~~~-~~~~L~~~i~~dl~p~~~~lft-~~W~~~--------------~~~v~~I~~t~~dy~~d~~- 586 (733)
..|+...+.|..+.+. +...++..+..+++..++.-++ ..|.+. +.-....+.++..++.-+.
T Consensus 502 SIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~ 581 (706)
T 3fhn_A 502 SLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDS 581 (706)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999998 8888888888888777777776 689642 1113556778888888885
Q ss_pred h-hhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCchhHHHHHHHHh
Q psy12595 587 H-LVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNI-DAPLDCILALSEVL 664 (733)
Q Consensus 587 ~-l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~-~~~~~~l~~l~eli 664 (733)
. +.+..|..++..++..+..-....++. +.+|. ..+|.|+..|.+.+...|. +|... ...++.|.....+|
T Consensus 582 ~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~-~nkFS-----~~Ga~Qf~~D~~~L~~v~~-lp~~~~~~~~~~L~E~l~LL 654 (706)
T 3fhn_A 582 MDIPLAISLKVKNELLNVIVNYFTESILK-LNKFN-----QNGLNQFLHDFKSLSSILS-LPSHATNYKCMSLHELVKIL 654 (706)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTTT-TSCBC-----HHHHHHHHHHHHHHHTTSC-CCTTCCCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCccC-----HHHHHHHHHHHHHHHHHhc-CCCcchhhHHHHHHHHHHHc
Confidence 4 599999999999988877755666654 56777 7899999999999999888 55322 24566666667777
Q ss_pred ccCCCchhHHHH-HHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy12595 665 KNEDSEMLSLDL-HTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVLY 712 (733)
Q Consensus 665 ~~~d~~~i~~~~-~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~~ 712 (733)
++.-...-..++ +++.+ ...-+.+...+.+.- ++-++++..+=.
T Consensus 655 ~L~~d~~~~~f~~~~y~~---~~~~~~l~~~~~i~~-l~~~~i~d~lyr 699 (706)
T 3fhn_A 655 KLKYDPNNQQFLNPEYIK---TGNFTSLKEAYSIKY-LKDTKIQDALYR 699 (706)
T ss_dssp GGGGCGGGTTTTSHHHHH---HCCCSHHHHHHTCSS-SCHHHHHHHHHH
T ss_pred CCCCCcchhhHHHHHHHc---cCChHHHHHhcCccc-CCHHHHHHHHHH
Confidence 764221100001 12221 112255667777776 777777766543
No 6
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=91.14 E-value=14 Score=39.62 Aligned_cols=179 Identities=10% Similarity=0.104 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHh----------hhcCCC-ccC------CC--chhHHHHHHHHHHHHHhhh--hh
Q psy12595 530 LKVFEELRNDSAQYLLEEAFLDLLPHF----------QDLMTA-KWL------TS--TVSIQTICMTLDDYFQDYC--HL 588 (733)
Q Consensus 530 ~~~~~~l~~~~~~~L~~~i~~dl~p~~----------~~lft~-~W~------~~--~~~v~~I~~t~~dy~~d~~--~l 588 (733)
...|.++.....+.++..+...+.|.+ ..+.+. .|- +. ...++.|+..+..++.-++ ++
T Consensus 144 ~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~Il~~L~~~~~~L~~~~V 223 (419)
T 2f6h_X 144 KDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFANTEEYTMDDILTFFNSIYWCMKSFHI 223 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC---------------CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccccccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 445556666666666666666665432 111211 221 11 1247899999999999886 48
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CchhHHHHHHHHhccC
Q psy12595 589 VGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID-APLDCILALSEVLKNE 667 (733)
Q Consensus 589 ~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~-~~~~~l~~l~eli~~~ 667 (733)
+|.+.+.+..++...+-..-++.|+.++--|. -.-|.+|+-....|.+.+...+-... ..+..+.-.+.++.+.
T Consensus 224 ~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs-----~s~G~qIr~nls~Le~W~~~~~l~~a~~~L~~l~Qa~~lLq~~ 298 (419)
T 2f6h_X 224 ENEVFHAVVTTLLNYVDAICFNELIMKRNFLS-----WKRGLQLNYNVTRLEEWCKTHGLTDGTECLQHLIQTAKLLQVR 298 (419)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCC-----HHHHHHHHHHHHHHHHHHHHTTCTTHHHHTHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCcccc-----hhhHHHHHhhHHHHHHHHHHcCChhHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998776666 45678999999999999998765432 3455555557777653
Q ss_pred CCchhHHHHHHHhhhCCCCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHh
Q psy12595 668 DSEMLSLDLHTLLNKYPDISDDHISRLLTLRGD------LSRQEIRDIVLYVQK 715 (733)
Q Consensus 668 d~~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~d------l~r~e~~~il~~l~~ 715 (733)
... ...+..+...+|-++...+.+||.+=.+ ++.+-.+.+...++.
T Consensus 299 k~~--~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~e~~v~~~~i~~v~~~~~~ 350 (419)
T 2f6h_X 299 KYT--IEDIDILRGICYSLTPAQLQKLISQYQVADYESPIPQEILRYVADIVKK 350 (419)
T ss_dssp CSS--HHHHHHHHHHTTTSCHHHHHHHHHHCCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred CCc--hhhHHHHHHHhhcCCHHHHHHHHHhCCCccCCCCCCHHHHHHHHHHHhc
Confidence 333 2567778889999999999999986432 556666666655443
No 7
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=90.44 E-value=19 Score=37.72 Aligned_cols=182 Identities=10% Similarity=0.100 Sum_probs=128.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhhHHHhhhcCC---CccCCC--chhHHHHHHHHHHHHHhhh--hhhhhhHHHH
Q psy12595 528 ALLKVFEELRN----DSAQYLLEEAFLDLLPHFQDLMT---AKWLTS--TVSIQTICMTLDDYFQDYC--HLVGKNLEFI 596 (733)
Q Consensus 528 ~~~~~~~~l~~----~~~~~L~~~i~~dl~p~~~~lft---~~W~~~--~~~v~~I~~t~~dy~~d~~--~l~~~~~~~l 596 (733)
.....|.++.- +..+.+++.+..+++|.+..+.+ ++-.+. ...++.|+..+..++.-++ +++|.+...+
T Consensus 136 e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~ilP~~~~~~~~k~~~~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~Ql 215 (386)
T 3mmi_A 136 IYLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFDMVLNEKLFKNSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKI 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTCGGGSSSCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33444444444 55556666666666665444432 222222 2357899999999999886 4899999999
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CchhHHHHHHHHhccCCCchhHHH
Q psy12595 597 ILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNID-APLDCILALSEVLKNEDSEMLSLD 675 (733)
Q Consensus 597 ~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~s~~~-~~~~~l~~l~eli~~~d~~~i~~~ 675 (733)
+.++...+-..-++.|+-++--|. -.-+.+|+-....|.+.... +.... ..+..+...+.++.+ ++.. ..+
T Consensus 216 fsQLF~fIna~lFN~LLlRr~~cs-----~s~G~qIr~NLs~LEeW~~~-~l~~a~~~L~~L~QA~~LLQ~-~K~t-~~D 287 (386)
T 3mmi_A 216 FNDTLKYLNVMLFNDLITKCPALN-----WKYGYEVDRNIERLVSWFEP-RIEDVRPNLIQIIQAVKILQL-KISN-LNE 287 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCBC-----HHHHHHHHHHHHHHHHHHTT-TSSCCGGGGHHHHHHHHHHHC-CCCC-HHH
T ss_pred HHHHHHHHhHHHHHHHHccCcccC-----cchHHHHHhhHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHcc-CCCC-HHH
Confidence 999999999999999997776665 34688999999999999998 43332 456666667888875 3333 357
Q ss_pred HHHHhhhCCCCCHHHHHHHHhhcCC-------CCHHHHHHHHHHHHhcc
Q psy12595 676 LHTLLNKYPDISDDHISRLLTLRGD-------LSRQEIRDIVLYVQKTK 717 (733)
Q Consensus 676 ~~~l~~~ypD~~~~~v~aiL~~R~d-------l~r~e~~~il~~l~~~~ 717 (733)
+..+...+|.++...+.+||..=.+ ++.+-.+.+.+.++...
T Consensus 288 i~~i~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~~ 336 (386)
T 3mmi_A 288 FKLLFDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKREN 336 (386)
T ss_dssp HHHHHTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHhccc
Confidence 7888899999999999999986543 34555566666665543
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=74.34 E-value=3.3 Score=29.74 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=29.2
Q ss_pred hHHHHHHHhhhCCCCCHHHHHHHHh-hcCCCCHHHHHHHHH
Q psy12595 672 LSLDLHTLLNKYPDISDDHISRLLT-LRGDLSRQEIRDIVL 711 (733)
Q Consensus 672 i~~~~~~l~~~ypD~~~~~v~aiL~-~R~dl~r~e~~~il~ 711 (733)
....+..|...||+++...++.+|. ++||++++ .+.+++
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~A-i~~LL~ 43 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLT-IGLLLK 43 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHH-HHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHH-HHHHHh
Confidence 3566788999999999999998887 77877554 333443
No 9
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.84 E-value=33 Score=27.03 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12595 43 KISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQ 90 (733)
Q Consensus 43 ~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~ 90 (733)
.++|+.+|+..++..++..+.-++.|..++++++.=+.+|.+|-...+
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~ 52 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 468999999999999999999999999999999887777766544333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.41 E-value=3.1e+02 Score=37.14 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=96.9
Q ss_pred CCcc-hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hhhhh-c
Q psy12595 25 RSDQ-LEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVL----PPLGL-K 98 (733)
Q Consensus 25 ~p~~-L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~----~~~v~-~ 98 (733)
+|.+ |+=|..|++=+.+|+..++.+ .+-.+.|+..|.+|...|.++++.+...+....+. +.+.+ .
T Consensus 1893 TP~syLeli~~y~~ll~~K~~el~~~--------~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1893 TPRHYLDFINQVVLLINEKRDQLEEE--------QLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 778888888888887777554 44568999999999999999999998776544433 22222 1
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcC--chHHH---HHHHHHHHHHHHHHHHHHhhccCCChhhH
Q psy12595 99 LSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEG--KLLHA---HQSLMDLEKSRDELMYETHKLSGQSMADK 173 (733)
Q Consensus 99 ~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~--~LL~a---h~~L~~LE~~rd~~l~e~~~~~~~~~~~~ 173 (733)
..+-.++...+.........+.. -...++..++-.+.+ .-++| -..|.++|.--+.++.++.. -+
T Consensus 1965 ~~~~~~ae~~k~~v~~~~~~~~~---~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~-------~~ 2034 (3245)
T 3vkg_A 1965 VQDQQAAEIKQKDARELQVQLDV---RNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDE-------IV 2034 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 12222222222222221212211 112223333333333 11111 22333333333333333322 13
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHhhhhhhhhHHH
Q psy12595 174 LLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKEPTVIVTALRIIEREEHLDQMCMQ 231 (733)
Q Consensus 174 ~~l~~~f~~v~~l~~~l~~~l~~~~~~~l~~~~~~~~~lv~a~rIie~EE~~D~~~~~ 231 (733)
..|...-+.|+.+.+.|+..+...- ..-.-+......|.+|-+.|..=..+-.+|.+
T Consensus 2035 ~~L~~le~~l~~L~~~~~~~~~ek~-~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A 2035 ATITALEKSIATYKEEYATLIRETE-QIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence 3455555666666666665544321 11111111245677888888777767677765
No 11
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.43 E-value=4.7 Score=31.03 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=30.0
Q ss_pred hhHHHHHHHhhhCCCCCHHHHHHHHh-hcCCCCHHHHHHHHH
Q psy12595 671 MLSLDLHTLLNKYPDISDDHISRLLT-LRGDLSRQEIRDIVL 711 (733)
Q Consensus 671 ~i~~~~~~l~~~ypD~~~~~v~aiL~-~R~dl~r~e~~~il~ 711 (733)
.....+..|...||++..+.|+++|. ++||++ ..+..+++
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd-~aId~LL~ 57 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVD-ATIDQLLQ 57 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHH-HHHHHHHh
Confidence 34556788999999999999999995 666664 34455554
No 12
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=58.29 E-value=15 Score=27.39 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=29.3
Q ss_pred chhHHHHHHHhhhCCCCCHHHHHHHHh-hcCCCCHHHHHHHHH
Q psy12595 670 EMLSLDLHTLLNKYPDISDDHISRLLT-LRGDLSRQEIRDIVL 711 (733)
Q Consensus 670 ~~i~~~~~~l~~~ypD~~~~~v~aiL~-~R~dl~r~e~~~il~ 711 (733)
......+..|...||+++.+.|+++|. +.||++ ..++.+++
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd-~aI~~LL~ 48 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKD-AAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHH-HHHHHHHc
Confidence 334566789999999999999999996 555553 33444443
No 13
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=54.58 E-value=89 Score=28.72 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHhhhh-hcCCchH
Q psy12595 104 AQNNRHVQYVTAIENLTH-VFAVPDS 128 (733)
Q Consensus 104 ~l~~~~~nl~~~~~~l~~-l~~~~~~ 128 (733)
++..+++.+..++..++. +.++|..
T Consensus 118 rIa~ARr~YN~aV~~yN~~i~~FP~~ 143 (171)
T 2etd_A 118 RIAVARRDYNEAVXXYNTAIXXFPGV 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHhcccccCcHH
Confidence 455666666666666633 4555543
No 14
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=54.00 E-value=11 Score=27.51 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHhhcC
Q psy12595 673 SLDLHTLLNKYPDISDDHISRLLTLRG 699 (733)
Q Consensus 673 ~~~~~~l~~~ypD~~~~~v~aiL~~R~ 699 (733)
...+.+|...||++..+.|+.+|..++
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~ 39 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAA 39 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcC
Confidence 346789999999999999999999765
No 15
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=50.32 E-value=64 Score=27.38 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHH
Q psy12595 29 LEKVNQYKQRIIRKKISVETTLKTA-MQSQLDGVISGIQEL 68 (733)
Q Consensus 29 L~kl~~~~~~~~~~~~~vd~~Lk~~-v~~ql~~~~~gl~~L 68 (733)
-++++.+-..+..++..|+.+|... +...++.+..++..|
T Consensus 30 ~E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~L 70 (111)
T 2l3l_A 30 KENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGL 70 (111)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 3599999999999999999999744 233344444444443
No 16
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=41.14 E-value=2.2e+02 Score=26.35 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHhccchhh
Q psy12595 25 RSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVI-SGIQELKTV-LEDMQTIKENIHEMKNSLQVLPPL 95 (733)
Q Consensus 25 ~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~-~gl~~L~~a-~~~v~~i~~~l~~i~~~~~~~~~~ 95 (733)
.|.|+..+..+..+-..-+..|++ . +..++.+. .|-..+... ..+...|++.+..++..+..-..+
T Consensus 28 ~~~dl~~v~~ll~~h~~~~~ei~~----~-~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l~~L~~~w~~L~~~ 95 (214)
T 1s35_A 28 MPESLPEAEQLLQQHAGIKDEIDG----H-QDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRM 95 (214)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 467888877776665433333332 1 12222222 344433321 224566777777777666654444
No 17
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=39.24 E-value=3.2e+02 Score=27.73 Aligned_cols=109 Identities=15% Similarity=0.145 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhcCCCccCCCc------hhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q psy12595 533 FEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTST------VSIQTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVT 606 (733)
Q Consensus 533 ~~~l~~~~~~~L~~~i~~dl~p~~~~lft~~W~~~~------~~v~~I~~t~~dy~~d~~~l~~~~~~~l~~~~~~~~v~ 606 (733)
|.+..+.|-..+.+.+-..+...+ .+-.-.|.... +++..++.=++..+.-+..|++...+.++-....++..
T Consensus 178 f~~~r~~Ae~~I~~~v~~KIDdfl-~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~sl~~LP~~v~~~~~~~a~~his~ 256 (325)
T 2a2f_X 178 FHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVEPPGIASAFITDMISYLKSTFDSFAFKLPHIAQAACRRTFEHIAE 256 (325)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHH-TTCCTTCC----CCSCCHHHHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444556677777777777777777 66666898653 58888888888888867789999999999988888888
Q ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12595 607 RYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKY 646 (733)
Q Consensus 607 ~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~ 646 (733)
..+.-|+....|- .+ ..|..++..|+..+.+|-.+-
T Consensus 257 ~l~~~Ll~~~vk~--in--~~av~~~~~Dv~~lE~fa~~~ 292 (325)
T 2a2f_X 257 KIYSIMYDEDVKQ--IS--TGALTQINLDLMQCEFFAASE 292 (325)
T ss_dssp HHHHHHTC--------C--CTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCcchhh--cC--HHHHHHHHHHHHHHHHHHHhC
Confidence 8888776433332 22 578999999999999998663
No 18
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=38.65 E-value=2.2e+02 Score=29.40 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhh
Q psy12595 74 DMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWIS 137 (733)
Q Consensus 74 ~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~ 137 (733)
++..+.+.+.++.....+ +....+-...+++...+..|..+++.++.+...-..++.+.++++
T Consensus 26 ~l~~~~~r~~el~~~~~~-p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~ 88 (365)
T 1gqe_A 26 DYDAKKERLEEVNAELEQ-PDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAV 88 (365)
T ss_dssp THHHHHHHHHHHHHHHHS-GGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777776654 667777788888999999999999999888776666666666654
No 19
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=37.74 E-value=2.2e+02 Score=25.44 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhc
Q psy12595 59 DGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISE 138 (733)
Q Consensus 59 ~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~ 138 (733)
+..-.++..|+++--.=..+++.|..+=--.++ ...++.+.+=......-+.+..+...|..+ +..+.+-+++
T Consensus 25 ~elik~L~~le~sassDa~vrq~Ia~LP~eVsd-~s~l~klkDk~~~e~l~~~veeA~~~L~eY------n~rL~~E~~d 97 (152)
T 4fla_A 25 EELIKALQDLENAASGDATVRQKIASLPQEVQD-VSLLEKITDKEAAERLSKTVDEACLLLAEY------NGRLAAELED 97 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGTC-GGGGGGCCSHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHcCCccccC-HHHHHHcccHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 344555556655544444455555443322222 223333333333333344444444444444 4566666777
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHHHhcHHHHHHHHHHHHH
Q psy12595 139 GKLLHAHQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSDVEKVSQLLEKQIK 195 (733)
Q Consensus 139 ~~LL~ah~~L~~LE~~rd~~l~e~~~~~~~~~~~~~~l~~~f~~v~~l~~~l~~~l~ 195 (733)
|+-| -..|.+.-.+..+.+.++.. ....-+.+..+|..+..++..++-
T Consensus 98 R~~L--~~~L~~~~~~~~~~l~e~e~-------~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 98 RRQL--ARMLVEYTQNQKDVLSEKEK-------KLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6422 22233333344444444433 234555666777777777777653
No 20
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=37.54 E-value=1.4e+02 Score=26.04 Aligned_cols=88 Identities=11% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCCcchhhHHHHHHHHHHhhhhHHH------------HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q psy12595 24 QRSDQLEKVNQYKQRIIRKKISVET------------TLKTAMQSQLDGVISGIQELKTV---------LEDMQTIKENI 82 (733)
Q Consensus 24 ~~p~~L~kl~~~~~~~~~~~~~vd~------------~Lk~~v~~ql~~~~~gl~~L~~a---------~~~v~~i~~~l 82 (733)
.+|+++++|..+...++.=+..++. ..++.+++-+-.++..|..|... .+--+++++.|
T Consensus 17 ysp~~i~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L 96 (133)
T 3ls0_A 17 YSPEKIAQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHL 96 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence 4677888887777766554444443 33444555555666666655433 34444555555
Q ss_pred HHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhh
Q psy12595 83 HEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHV 122 (733)
Q Consensus 83 ~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l 122 (733)
.+++.-+.. +....+.+++..++..+..+
T Consensus 97 ~~LD~AA~~-----------~n~~~a~k~Y~~a~adfdaf 125 (133)
T 3ls0_A 97 ERLDAAAKD-----------RNGSQAKIQYQEALADFDSF 125 (133)
T ss_dssp HHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----------cCHHHHHHHHHHHHHHHHHH
Confidence 565544443 22344555666666665543
No 21
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=35.43 E-value=2.3e+02 Score=24.98 Aligned_cols=82 Identities=7% Similarity=0.114 Sum_probs=61.2
Q ss_pred ccCCC----chhHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH--HHHHH
Q psy12595 563 KWLTS----TVSIQTICMTLDDYFQDYC-HLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAE--KIVKE 635 (733)
Q Consensus 563 ~W~~~----~~~v~~I~~t~~dy~~d~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~--~i~~D 635 (733)
+|-.. ++++++||.-+--...-+. +|++.--+.+...++..+-..+-.++-+-. .++ +.+.+ .|.+|
T Consensus 42 ~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~~--i~~----~~G~q~g~v~~D 115 (141)
T 3n1e_A 42 KYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLN--VIN----DGGPQNGLVTAD 115 (141)
T ss_dssp TCCCCSSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCS----SSSHHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCC----CCcccchHHHHH
Confidence 78642 3688999988877777775 689999999999999999888888885433 333 23333 48899
Q ss_pred HHHHHHHHhhccCCC
Q psy12595 636 TKQLKNLFSKYTTNI 650 (733)
Q Consensus 636 ~~~l~~~F~~~~s~~ 650 (733)
+.-+.+-+..+..-.
T Consensus 116 v~ff~~~L~~L~g~~ 130 (141)
T 3n1e_A 116 VAFYTGNLQALKGLK 130 (141)
T ss_dssp HHHHHHHHHTSTTCT
T ss_pred HHHHHHHhcccCCCC
Confidence 998888888876543
No 22
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.26 E-value=55 Score=25.32 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=30.9
Q ss_pred chhHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12595 670 EMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVL 711 (733)
Q Consensus 670 ~~i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~ 711 (733)
..+...+..++..|||++..+|.++|..=++=-...+..+++
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 455667888999999999999999999765432444444444
No 23
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=32.51 E-value=73 Score=30.95 Aligned_cols=84 Identities=18% Similarity=0.064 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHH
Q psy12595 29 LEKVNQYKQRIIRKKISVETTLKTAMQS-QLDG----VISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLR 103 (733)
Q Consensus 29 L~kl~~~~~~~~~~~~~vd~~Lk~~v~~-ql~~----~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik 103 (733)
|++++++.+++.++-...+..|...-+. |-+. +..+++.......++..+.+.+..+...|++-.. .+|.++.
T Consensus 123 lerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~a~k~~e~ie~dL~~~e~~i~~l~~~a~~L~~--~~y~~a~ 200 (235)
T 2odv_A 123 LEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKD--GRHPQGE 200 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcHH
Confidence 6788888888888888888777643211 1010 1111223334445555555555555554443221 2555555
Q ss_pred HHHHHHHhHHH
Q psy12595 104 AQNNRHVQYVT 114 (733)
Q Consensus 104 ~l~~~~~nl~~ 114 (733)
++.....+|..
T Consensus 201 ~i~~r~~~l~~ 211 (235)
T 2odv_A 201 QMYRRVYRLHK 211 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 24
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=31.36 E-value=2.2e+02 Score=23.44 Aligned_cols=65 Identities=15% Similarity=0.072 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12595 570 SIQTICMTLDDYFQDYCHLVGKNLEFIILEAE-ELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYT 647 (733)
Q Consensus 570 ~v~~I~~t~~dy~~d~~~l~~~~~~~l~~~~~-~~~v~~Yl~~l~~~~~~~k~~~~~~~~a~~i~~D~~~l~~~F~~~~ 647 (733)
+-+.=...+.|-..+++.|+...-..+...-. ..-+..||++- +...++...|+..|+++|.+||
T Consensus 36 ~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~-------------kvL~~rns~DI~~ire~fqKYG 101 (101)
T 4aj5_1 36 FEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKAT-------------KVLMEKNSMDIMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------HHHHHHhHHHHHHHHHHHHHcC
Confidence 33444555666677776665444443333221 33444555542 4566788999999999999986
No 25
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.73 E-value=3e+02 Score=24.55 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhh
Q psy12595 101 DLRAQNNRHVQYVTAIENLTHV 122 (733)
Q Consensus 101 ~ik~l~~~~~nl~~~~~~l~~l 122 (733)
...++...++-|.+-+++|+.|
T Consensus 129 Kl~rv~~vkkeL~~hi~sLPDl 150 (152)
T 4fla_A 129 KLARVTQVRKELKSHIQSLPDL 150 (152)
T ss_dssp HHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHhhcCCcc
Confidence 4556666777777777777654
No 26
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=28.63 E-value=3.6e+02 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=17.5
Q ss_pred HHHHHhhC--CCcchhhHHHHHHHHHHh
Q psy12595 17 KQLLTLLQ--RSDQLEKVNQYKQRIIRK 42 (733)
Q Consensus 17 ~~i~~ll~--~p~~L~kl~~~~~~~~~~ 42 (733)
+++.+|++ +|+||..=..+.+.+.++
T Consensus 36 a~L~eLirs~~PeDL~~AN~LiK~m~~~ 63 (186)
T 1oxz_A 36 KMLARLLKSSHPEDLRAANKLIKEMVQE 63 (186)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhcc
Confidence 35778888 488887666666655544
No 27
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=28.30 E-value=3.6e+02 Score=25.01 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=32.6
Q ss_pred CCcchhhHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q psy12595 25 RSDQLEKVNQYKQRIIRKKISVET---TLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLG 96 (733)
Q Consensus 25 ~p~~L~kl~~~~~~~~~~~~~vd~---~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v 96 (733)
-|.|++.+..+..+-..-+..+++ .+... ...|-..+....-+...|+..+..++..++....+.
T Consensus 41 ~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~-------~~~G~~Ll~~~~~~~~~i~~~l~~L~~~w~~L~~~~ 108 (218)
T 3fb2_A 41 LAKDVTGAEALLERHQEHRTEIDARAGTFQAF-------EQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAW 108 (218)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHH-------HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 377888877766664443343432 12111 233444443322334556666666666665544443
No 28
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.61 E-value=1.6e+02 Score=25.92 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12595 31 KVNQYKQRIIRKKISVET------TLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQV 91 (733)
Q Consensus 31 kl~~~~~~~~~~~~~vd~------~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~ 91 (733)
.|.++++|+.--++-+++ +|+.+-++-+++++.+...++.+.+++...+..+.+..++.++
T Consensus 21 Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~ 87 (158)
T 3tul_A 21 SLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQ 87 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 566667776665544444 3455555566666666666666655555555555554444333
No 29
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=26.33 E-value=1.9e+02 Score=25.24 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=67.2
Q ss_pred HHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-h
Q psy12595 16 SKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP-P 94 (733)
Q Consensus 16 ~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~-~ 94 (733)
...+-+.++.+.+++-|.++-.+++++....+..+-..|-.=-.|-+..++.|..+--..++++--+.+|+..++..- -
T Consensus 47 ~~lvi~~~~~~~s~~~ie~la~KiA~ER~eA~~NIgeFVYN~N~GR~~i~~~l~~~~~~~~eL~~~i~kIN~~FD~fly~ 126 (136)
T 1yku_A 47 LSAFIMYLKEEISLQEIEITSKKIARERIDAKVNIAEFIHNTNVAKIEIMNILTLLNPDLQQYQALVKKINQFFDHLIYY 126 (136)
T ss_dssp HHHHHHHHTTSSCGGGGHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhccccHHHHHHHcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999999999998888776666666677777777778888888888887777643 2
Q ss_pred hhhchHHH
Q psy12595 95 LGLKLSDL 102 (733)
Q Consensus 95 ~v~~~~~i 102 (733)
.|..|.++
T Consensus 127 aV~~Ytel 134 (136)
T 1yku_A 127 TVHSYYEQ 134 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 22444443
No 30
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.05 E-value=1.9e+02 Score=23.89 Aligned_cols=52 Identities=8% Similarity=0.246 Sum_probs=41.4
Q ss_pred cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 27 DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMK 86 (733)
Q Consensus 27 ~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~ 86 (733)
+.+.+|+.+.+++...--++|.-|+. ..+|+..+..|+..++..+.++..+.
T Consensus 34 eal~eLEeIV~~LE~gel~LEesl~l--------yeeG~~L~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 34 TALAELESLVSAMENGTLPLEQSLSA--------YRRGVELARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888888766554 57888889999988888888887774
No 31
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=24.39 E-value=3.6e+02 Score=23.66 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=4.8
Q ss_pred HHHHhhC--CCcchhhHHHHHHHHHH
Q psy12595 18 QLLTLLQ--RSDQLEKVNQYKQRIIR 41 (733)
Q Consensus 18 ~i~~ll~--~p~~L~kl~~~~~~~~~ 41 (733)
++.+|++ +|+||..=..+.+.+.+
T Consensus 12 ~L~~Lirs~~P~DL~~AN~LiK~m~~ 37 (140)
T 1o3x_A 12 MLARLLKSSHPEDLRAANKLIKEMVQ 37 (140)
T ss_dssp ---------------CCCSSTHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHc
Confidence 5788888 59999744444444443
No 32
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=24.23 E-value=3.7e+02 Score=23.64 Aligned_cols=74 Identities=11% Similarity=0.208 Sum_probs=50.2
Q ss_pred HHhhCCCcchh-hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhccch
Q psy12595 20 LTLLQRSDQLE-KVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENI--HEMKNSLQVLP 93 (733)
Q Consensus 20 ~~ll~~p~~L~-kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l--~~i~~~~~~~~ 93 (733)
-.++..-|||. -|+.+|..+..+...-..+--..|+.-++.+...++.|.+..+..+-+-.++ .+.+..|++-+
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQq 100 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQ 100 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 45566667786 7888888888777766666666666667777777777766666666666555 45566666543
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.72 E-value=4.9e+02 Score=26.86 Aligned_cols=29 Identities=3% Similarity=0.098 Sum_probs=14.3
Q ss_pred Ccchh-hHHHHHHHHHHhhhhHHHHHHHHH
Q psy12595 26 SDQLE-KVNQYKQRIIRKKISVETTLKTAM 54 (733)
Q Consensus 26 p~~L~-kl~~~~~~~~~~~~~vd~~Lk~~v 54 (733)
-.+.+ .+.++-..+.+++.-|+.++...+
T Consensus 104 ~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 104 ANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344 555555555555555544444443
No 34
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=22.40 E-value=3.1e+02 Score=28.23 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhh
Q psy12595 74 DMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWIS 137 (733)
Q Consensus 74 ~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~ 137 (733)
.+..+.+.+.++.....+ +....+-...+.+...++.|..+++.++.+...-..++.+..+++
T Consensus 4 ~l~~~~~r~~el~~~~~~-p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~ 66 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSD-PEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLD 66 (354)
T ss_dssp HHHHHTHHHHHHHHHTTS-TTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHhcC-CchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777777776654 666677788888999999999999999888777777777777775
No 35
>3pmd_A Conserved domain protein; globin fold, non-heme globin, sporulation, bacillus anthraci sensor domain, chloride coordination; HET: 11A; 1.76A {Bacillus anthracis}
Probab=21.80 E-value=2.2e+02 Score=25.28 Aligned_cols=90 Identities=10% Similarity=0.122 Sum_probs=70.6
Q ss_pred HHHHHHHhhCCCcchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Q psy12595 15 VSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLP- 93 (733)
Q Consensus 15 a~~~i~~ll~~p~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~- 93 (733)
-...|-+.++.+.+++-|.++-.+++++....+..+-..|-.==-|-+.-++.|..+--++++++--+.+|+..++..-
T Consensus 49 m~~lvi~~~~~~~sl~~i~~LA~KIA~ER~~A~~NIGdFVYNvNlGR~~i~~~l~~~~~~~~eLq~iI~kIN~~FD~f~y 128 (153)
T 3pmd_A 49 LLHVFTMYMREEINLQDIEDISKKIAQERMDAKVNIADFIYNTNEGKKEILNTLFLLNPTGQECKVVIEQINLFFDHLIY 128 (153)
T ss_dssp HHHHHHHHHTTSSCGGGGHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccccHHHHHHHcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455677999999999999999999999999999988888765666666667777777778888888889988887654
Q ss_pred hhhhchHHHHH
Q psy12595 94 PLGLKLSDLRA 104 (733)
Q Consensus 94 ~~v~~~~~ik~ 104 (733)
-.|..|.++|+
T Consensus 129 ~aV~~YtelK~ 139 (153)
T 3pmd_A 129 STIYSYYKLKK 139 (153)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33356666554
No 36
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=21.67 E-value=4e+02 Score=23.13 Aligned_cols=88 Identities=8% Similarity=0.163 Sum_probs=48.3
Q ss_pred CCCcchhhHHHHHHHHHHhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q psy12595 24 QRSDQLEKVNQYKQRIIRKKISVET-----------TLKTAMQSQLDGVISGIQELKT---------VLEDMQTIKENIH 83 (733)
Q Consensus 24 ~~p~~L~kl~~~~~~~~~~~~~vd~-----------~Lk~~v~~ql~~~~~gl~~L~~---------a~~~v~~i~~~l~ 83 (733)
.+|+++++|..+..+++.=+..+.. ..++.+++-+-.++..|..|.. |.+--+++++.|.
T Consensus 15 ysp~~i~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~ 94 (130)
T 3zsu_A 15 YSELQITRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFL 94 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHH
Confidence 4677787777777766543333311 3345555556666666666543 3455555666666
Q ss_pred HHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhh
Q psy12595 84 EMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHV 122 (733)
Q Consensus 84 ~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l 122 (733)
+|+.-+..- ....+.+++..++..++.+
T Consensus 95 ~LD~AA~~~-----------n~~~a~k~Y~~a~adfdaf 122 (130)
T 3zsu_A 95 KIDQGADLD-----------SVTVAQEGFREAEADFKAY 122 (130)
T ss_dssp HHHHHHHTT-----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----------CHHHHHHHHHHHHHHHHHH
Confidence 666544432 2334455556666555443
No 37
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=21.01 E-value=36 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHhcCcCcccccc
Q psy12595 287 QLILEDLRVVTTLCGPCFPPHY 308 (733)
Q Consensus 287 ~~i~~dL~~v~~~~~~~fPp~~ 308 (733)
.|+.+-|.-+|...+..||+.|
T Consensus 17 eW~le~LeElk~EAvrHFpr~~ 38 (51)
T 1ceu_A 17 DWTLELLEELKNEAVRHFPRIW 38 (51)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 4555566677888899999998
No 38
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=20.45 E-value=4.2e+02 Score=24.77 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=6.3
Q ss_pred CcchhhHHHHHHH
Q psy12595 26 SDQLEKVNQYKQR 38 (733)
Q Consensus 26 p~~L~kl~~~~~~ 38 (733)
+.||..|..+.++
T Consensus 49 g~Dl~~v~~ll~k 61 (224)
T 2iak_A 49 GSDLPSVESHLEN 61 (224)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3455555544443
Done!