Query psy12595
Match_columns 733
No_of_seqs 147 out of 412
Neff 8.5
Searched_HMMs 13730
Date Fri Aug 16 23:19:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12595.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12595hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mn3a_ a.5.2.4 (A:) Vacuolar 65.6 3.3 0.00024 28.6 3.9 29 671-699 11-39 (54)
2 d1gqea_ e.38.1.1 (A:) Polypept 64.2 19 0.0014 35.1 11.2 76 54-131 4-79 (362)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 61.7 5.7 0.00042 27.9 4.6 27 673-699 10-36 (59)
4 d1vp7a_ a.7.13.1 (A:) Exonucle 42.3 32 0.0023 24.6 6.3 53 27-87 10-62 (68)
5 d256ba_ a.24.3.1 (A:) Cytochro 40.0 68 0.005 24.8 8.7 29 128-156 71-99 (106)
6 d2etda1 a.29.9.1 (A:35-183) Hy 32.0 1.2E+02 0.0085 24.8 9.6 27 103-129 105-132 (149)
7 d2d2sa1 a.118.17.2 (A:525-753) 27.4 1.9E+02 0.014 25.3 16.5 77 248-330 105-182 (229)
8 d2di0a1 a.5.2.4 (A:8-70) Activ 25.4 47 0.0034 23.2 4.5 40 672-711 6-45 (63)
9 d1quua1 a.7.1.1 (A:1-124) alph 19.5 1.8E+02 0.013 22.1 9.1 19 73-91 87-105 (124)
10 d2b3tb1 e.38.1.1 (B:7-354) Pep 18.0 48 0.0035 31.8 4.5 61 78-139 2-62 (344)
No 1
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.56 E-value=3.3 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.9
Q ss_pred hhHHHHHHHhhhCCCCCHHHHHHHHhhcC
Q psy12595 671 MLSLDLHTLLNKYPDISDDHISRLLTLRG 699 (733)
Q Consensus 671 ~i~~~~~~l~~~ypD~~~~~v~aiL~~R~ 699 (733)
.....+.+|...|||+..+.++++|..++
T Consensus 11 e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~ 39 (54)
T d1mn3a_ 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAKK 39 (54)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 34556899999999999999999999665
No 2
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=64.17 E-value=19 Score=35.08 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHH
Q psy12595 54 MQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVER 131 (733)
Q Consensus 54 v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~ 131 (733)
++.++.+...-+..|.... ++..+++.+.+++..+.+ |....+-...+.+...+++|...++.++.+...-..++.
T Consensus 4 l~~~i~eL~~rl~~Lr~~f-Dld~kk~Rl~ELE~~lsd-P~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGYL-DYDAKKERLEEVNAELEQ-PDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHS-GGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcC-ChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677675443 578888889999888775 777778888888999999999998888776543333333
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.66 E-value=5.7 Score=27.86 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=23.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHhhcC
Q psy12595 673 SLDLHTLLNKYPDISDDHISRLLTLRG 699 (733)
Q Consensus 673 ~~~~~~l~~~ypD~~~~~v~aiL~~R~ 699 (733)
...+..|...|||+..+.|+++|...+
T Consensus 10 Ee~i~~LkeMFP~~D~~vI~~VL~a~~ 36 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQEVIRSVLEAQR 36 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999999999655
No 4
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=42.26 E-value=32 Score=24.60 Aligned_cols=53 Identities=8% Similarity=0.244 Sum_probs=40.8
Q ss_pred cchhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12595 27 DQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKN 87 (733)
Q Consensus 27 ~~L~kl~~~~~~~~~~~~~vd~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~i~~~l~~i~~ 87 (733)
+.+.+|+.+.+++...--++|.-++. -..|+..+..|++.+++.+.++..+..
T Consensus 10 e~l~~LE~IV~~LE~g~l~Leesl~~--------ye~G~~L~~~C~~~L~~ae~ki~~l~~ 62 (68)
T d1vp7a_ 10 TALAELESLVSAMENGTLPLEQSLSA--------YRRGVELARVCQDRLAQAEQQVKVLEG 62 (68)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34678888888988888888776654 478888888888888888887766654
No 5
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=40.01 E-value=68 Score=24.84 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=24.6
Q ss_pred HHHHHHhhhhcCchHHHHHHHHHHHHHHH
Q psy12595 128 SVERTKQWISEGKLLHAHQSLMDLEKSRD 156 (733)
Q Consensus 128 ~v~~l~~ll~~~~LL~ah~~L~~LE~~rd 156 (733)
.++.++.+++.|++-+|-..|-+|...|+
T Consensus 71 ~ld~i~~la~~G~l~eAk~~l~~l~~~r~ 99 (106)
T d256ba_ 71 QIDDALKLANEGKVKEAQAAAEQLKTTRN 99 (106)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35788899999999999988888887765
No 6
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=32.01 E-value=1.2e+02 Score=24.85 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHhhhh-hcCCchHH
Q psy12595 103 RAQNNRHVQYVTAIENLTH-VFAVPDSV 129 (733)
Q Consensus 103 k~l~~~~~nl~~~~~~l~~-l~~~~~~v 129 (733)
.++..+++.+..+.+.+++ |.++|..+
T Consensus 105 ~~Ia~aR~~YN~~V~~yN~~i~~FP~~l 132 (149)
T d2etda1 105 NRIAVARRDYNEAVKKYNTAIKKFPGVI 132 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3567788888888888875 77777654
No 7
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.37 E-value=1.9e+02 Score=25.27 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCchhHHHHHHHHHHHHHHHhHHHHHhcCcCccccccchH-HHHHHHHHHHHHHHH
Q psy12595 248 RKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNIV-TSFMRMYHDCLSIHL 326 (733)
Q Consensus 248 r~~~~~~l~~sv~~r~~~~~~~~~~~~~~~l~~~Le~~~~~i~~dL~~v~~~~~~~fPp~~~I~-~~y~~~yh~~l~~~l 326 (733)
++.|+.+-...++.++..... +++ ...++..+...++.-+..+-.....|||++=+.+ ..++.+-++.+..++
T Consensus 105 ~~lfL~~rs~~l~~~i~~~~~---~~~---~~~Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~~sS~lv~Wa~~ei~~f~ 178 (229)
T d2d2sa1 105 LDLFLQNRSNFIQDLILQIGS---VDN---PTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHF 178 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----CCS---HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCc---CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHH
Confidence 555655555555555544322 112 1245666666677777666667889998875543 556667777777666
Q ss_pred HHHH
Q psy12595 327 EEMA 330 (733)
Q Consensus 327 ~~l~ 330 (733)
.-+-
T Consensus 179 ~~l~ 182 (229)
T d2d2sa1 179 KLID 182 (229)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 8
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.44 E-value=47 Score=23.23 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=29.0
Q ss_pred hHHHHHHHhhhCCCCCHHHHHHHHhhcCCCCHHHHHHHHH
Q psy12595 672 LSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIRDIVL 711 (733)
Q Consensus 672 i~~~~~~l~~~ypD~~~~~v~aiL~~R~dl~r~e~~~il~ 711 (733)
+...+......|||....+|.++|..=++=...-+..+++
T Consensus 6 l~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe 45 (63)
T d2di0a1 6 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 45 (63)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3445778888999999999999998776444444444444
No 9
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.53 E-value=1.8e+02 Score=22.13 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy12595 73 EDMQTIKENIHEMKNSLQV 91 (733)
Q Consensus 73 ~~v~~i~~~l~~i~~~~~~ 91 (733)
.+...|++.+..+...|+.
T Consensus 87 ~~~~~i~~~~~~l~~rW~~ 105 (124)
T d1quua1 87 HDAVNVNDRCQKICDQWDR 105 (124)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444
No 10
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=17.99 E-value=48 Score=31.81 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhccchhhhhchHHHHHHHHHHHhHHHHHHhhhhhcCCchHHHHHHhhhhcC
Q psy12595 78 IKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLTHVFAVPDSVERTKQWISEG 139 (733)
Q Consensus 78 i~~~l~~i~~~~~~~~~~v~~~~~ik~l~~~~~nl~~~~~~l~~l~~~~~~v~~l~~ll~~~ 139 (733)
|++.+.+++....+ |....+-...++++..++.|...++.++.+...-..++.+..++++.
T Consensus 2 i~eR~eELe~~Lsd-Pd~w~D~~kaqkLsKE~s~L~~iV~~~~~l~~~~~dleel~eL~eD~ 62 (344)
T d2b3tb1 2 LHERHEEVQALLGD-AQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDP 62 (344)
T ss_dssp HHHHHHHHHHHHHH-HTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------
T ss_pred hHHHHHHHHHHhhC-CcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55666677766654 65666666778889999999999999999888888888887777544
Done!