RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12595
(733 letters)
>gnl|CDD|218871 pfam06046, Sec6, Exocyst complex component Sec6. Sec6 is a
component of the multiprotein exocyst complex. Sec6
interacts with Sec8, Sec10 and Exo70.These exocyst
proteins localise to regions of active exocytosis-at the
growing ends of interphase cells and in the medial
region of cells undergoing cytokinesis-in an
F-actin-dependent and exocytosis- independent manner.
Length = 557
Score = 400 bits (1030), Expect = e-131
Identities = 175/543 (32%), Positives = 293/543 (53%), Gaps = 22/543 (4%)
Query: 180 FSDVEKVSQLLEKQIKLILSRTLLTVRKEPTVIVTALRIIEREEHLDQMCMQKKQQ---- 235
FS ++ + + +K + I+ + VR+ P ++V ALRI+EREE D+ ++
Sbjct: 1 FSKLDGLIEKFDKLLWEIIRNLIELVREGPELLVRALRIVEREEKEDEKAEALQEATKDE 60
Query: 236 --SNYM-PIGRPKQWRKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILED 292
+ GRP+ ++ + LEESV ++ E E+ LV LE +R + ED
Sbjct: 61 NNDDAGRFRGRPRGYKDKFLDALEESVEERFEE--CRERFLGDPDLVQVLENLRW-VFED 117
Query: 293 LRVVTTLCGPCFPPHYNIVTSFMRMYHDCLSIHLEEMATS-LEGNEIVSMLTWAVNTYPG 351
L VV L P FPPHYNI +++ +YH+ L L+E+A LE +I+++L+W NTY
Sbjct: 118 LIVVKDLLAPLFPPHYNIFKTYVNIYHNALHDFLQELADPELEAEDILAILSW-DNTYYS 176
Query: 352 PDMMSNPELGANATPLGPVLKEEVIKELENKYFKYIQENYVDWMRKTLETEKEDWKSCSP 411
M L + + L P+L +E+ +ELE+ Y I +WM LETEK+++ + P
Sbjct: 177 --FMGKLGLAPDKSDLEPLLLDELKEELEDDYLSLIVNKVREWMDNLLETEKKEFVAEQP 234
Query: 412 PDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDALKE 471
PD D +G+YHT PV +FQMI++ L + + Q +IL+ +E ++++ + +DA E
Sbjct: 235 PDIDEDGYYHTPLPVDVFQMIEEQLDVAAESLQ---AKILVGVLEELSKFLRSRQDAWIE 291
Query: 472 LKVEHFKDRSKMVYFTHFMIAMLNNCLKFVELAHQMKQTFW-KRSELHRSDASNKFEALL 530
L E + + ++IA+ N+ LK + A + Q + K S + + +FE LL
Sbjct: 292 LLEEELRKYMSVPGLVEYLIALANDQLKCADYASSLLQKYLPKVSSKYEERITEEFEELL 351
Query: 531 KVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYCHLVG 590
F +L + LLE F DL P L T KW T + ++ I T++DY DY +
Sbjct: 352 DGFVDLSKECISLLLELIFNDLQPALSKLFTKKWYTGEL-MEQIVETIEDYLNDYQEYLH 410
Query: 591 KNL-EFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKY--T 647
L + ++ E + +V Y+ ++ K+++FK EERK AEK+ ++ +QL + F K
Sbjct: 411 PPLFQELLEELLDELVVEYLRALRNKRLVFKGAEERKQFAEKMKRDAEQLYDFFQKLGDA 470
Query: 648 TNIDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQEIR 707
+ + + L ++LK ED + L L++ TLL+ YPDIS+DH+ +L RGDL + ++
Sbjct: 471 AYLLSKFRVLEKLLDLLKLEDPDALILEVETLLSSYPDISEDHVEAVLKARGDLDKSMVK 530
Query: 708 DIV 710
++
Sbjct: 531 ALL 533
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 116 bits (292), Expect = 7e-27
Identities = 133/641 (20%), Positives = 247/641 (38%), Gaps = 41/641 (6%)
Query: 115 AIENLTHVFAVPDSVERT-----KQWISEGKLLHAHQSLMDLEKSRDELMYETHKLSGQS 169
A NL +V D +E + I LL H L D ++L +
Sbjct: 99 AHSNLCNVVEFSDRIEDILGTVLTEDIDMPNLLAYHTKLYDARDFGEQLDM--YATEISH 156
Query: 170 MADKLLLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRKEP-TVIVTALRIIEREEHLD-- 226
D + + FS +EK S + + I + V+ + +I+E+EE D
Sbjct: 157 -DDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHIEAMDKIFKIVEKEEARDEL 215
Query: 227 ----QMCMQKKQQSNYMPI-----GRPKQWRKMAMAVLEESVSQKIEGTQVDEKGS--NK 275
+ + +S P+ G + + L++ V + IE + ++ N+
Sbjct: 216 TRKIRDAKSELPKSQDNPVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRNE 275
Query: 276 MWLVMYLELIRQLILEDLRVVTTLCGPCFPPHYNIVTSFMRMYHDCL-SIHLEEMATSLE 334
EL I +DL + FPP NI+T + Y +CL + +E+ L+
Sbjct: 276 YIFDNSGELNMDFIFKDLSFIRENISLSFPPFDNILTLYHNNYQECLLKLFTDEVTERLD 335
Query: 335 GNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVLKEEVIKELENKYFKYIQENYVDW 394
EI++++ + N Y + A +G L + EL KY K QE +W
Sbjct: 336 AGEILAIIEFVGNYYN----TIESKFNFIADEVGGRLLDNETGELLEKYTKLAQEKLKEW 391
Query: 395 MRKTLETEKEDW-KSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLL 453
+ E + + P D +G V +FQMI Q L+ ++ I+
Sbjct: 392 VMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTNRSDVVGIVFA 451
Query: 454 SVEH-VTEYGKMSKDALKELKVEHFKDRSKMVY---FTHFMIAMLNNCLKFVELAHQM-K 508
+ +T+Y ++ K L E + FK + ++IA+ N+ LK + +
Sbjct: 452 HITRTITKYQEIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAVGNDGLKIAQYITSLPS 511
Query: 509 QTFWKRSELHRSDASNKFEALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTST 568
TF + + +D + + F ++ S +L E D P + T +W +
Sbjct: 512 NTFELITSEYENDEVKELGKTVDGFIDILKASNTFLAEFIIYDCQPAIDKIFTDEWYGGS 571
Query: 569 VSIQTICMTLDDYFQDYC-HLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKA 627
V+ + I TL DY DY + I E +V Y+ + +K+ +
Sbjct: 572 VT-KVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLGRKRASI----AEEN 626
Query: 628 AAEKIVKETKQLKNLFSKY--TTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPD 685
A+ + + +L +FS Y ++ L IL + ++ + ++ +++ +L Y D
Sbjct: 627 ASRTLKSDHTKLYEMFSGYGDPEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWD 686
Query: 686 ISDDHISRLLTLRGDLSRQEIRDIVLYVQKTKANRRFSYSK 726
I I +L R DL+ I+ L + + + S+
Sbjct: 687 IKKSLIKTILKKRQDLTESIIQKKTLADRLKECFTDVATSR 727
>gnl|CDD|213866 TIGR03818, MotA1, flagellar motor stator protein MotA. The MotA
protein, along with its partner MotB, comprise the
stator complex of the bacterial flagellar motor. MotAB
span the cytoplasmic membrane and undergo conformational
changes powered by the translocation of protons. These
conformational changes in turn are communicated to the
rotor assembly, producing torque. This model represents
one family of MotA proteins which are often not
identified by the "transporter, MotA/TolQ/ExbB proton
channel family" model, pfam01618.
Length = 282
Score = 31.7 bits (73), Expect = 1.0
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 631 KIVKET-KQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSE-MLSLDLH-------TLLN 681
K++KET K L +F LD + L E+L+ E +++++ H ++ +
Sbjct: 52 KVLKETLKGLPKVFKGSKYGKADYLDLLSLLYELLRKARREGLMAIESHIENPEESSIFS 111
Query: 682 KYPDISDDH 690
KYP I DH
Sbjct: 112 KYPKILKDH 120
>gnl|CDD|232861 TIGR00181, pepF, oligoendopeptidase F. This family represents the
oligoendopeptidase F clade of the family of larger M3 or
thimet (for thiol-dependent metallopeptidase)
oligopeptidase family. Lactococcus lactis PepF
hydrolyzed peptides of 7 and 17 amino acids with fairly
broad specificity. The homolog of lactococcal PepF in
group B Streptococcus was named PepB (PMID:8757883),
with the name difference reflecting a difference in
species of origin rather activity; substrate profiles
were quite similar. Differences in substrate specificity
should be expected in other species. The gene is
duplicated in Lactococcus lactis on the plasmid that
bears it. A shortened second copy is found in Bacillus
subtilis [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 591
Score = 31.9 bits (73), Expect = 1.5
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 617 VIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLK 665
++KN EE + E + ++ K++K + + L+ + ++L
Sbjct: 14 DLYKNKEEWELFLEALEEDIKEIKAFKKGLLHSKETFLEALALEEKILI 62
>gnl|CDD|202865 pfam04048, Sec8_exocyst, Sec8 exocyst complex component specific
domain.
Length = 142
Score = 30.3 bits (69), Expect = 1.5
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 21 TLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDGVISGIQELKTVLEDMQTIKE 80
T + + + + Q K+RI E L+ + G S I +L + + +E
Sbjct: 34 TSVGLAHRYPEFEQLKKRI-------EQALQEVVNEHHQGFNSSIGSYHKILSSITSSQE 86
Query: 81 NIHEMKNSLQV-LPPLGLKLSDLRAQNNRHVQYVTAIENL---THVFAVPDSVE 130
I ++K SL+ LG + +L+ N R +Y IE L + VPD +E
Sbjct: 87 RIRQLKESLEEAKKLLGTRKPELKELNQRSQKYKEMIELLDAIEELRKVPDKLE 140
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 30.4 bits (69), Expect = 2.7
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 16/136 (11%)
Query: 438 LTKDISQELTERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVYFTHFMIAMLNNC 497
L+K + + + + YGK + LK + S F++ +LN
Sbjct: 70 LSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEESLSQVKRTFILPLLNFL 129
Query: 498 LK-FVELAHQMKQTFWKR----------SELHRSDASNKFEALLKVFEELRNDSAQYLLE 546
L F E+ K+ K + +S K E L K EELR A+ E
Sbjct: 130 LGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRK--AKQEFE 187
Query: 547 EAF---LDLLPHFQDL 559
E+ ++ LP
Sbjct: 188 ESNAQLVEELPQLVAS 203
>gnl|CDD|132839 cd07200, cPLA2_Grp-IVA, Group IVA cytosolic phospholipase A2;
catalytic domain; Ca-dependent. Group IVA cPLA2, an 85
kDa protein, consists of two domains: the regulatory C2
domain and the alpha/beta hydrolase PLA2 domain. Group
IVA cPLA2 is also referred to as cPLA2-alpha. The
catalytic domain of cytosolic phospholipase A2 (cPLA2;
EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of
phospholipids to release arachidonic acid. At the active
site, cPLA2 contains a serine nucleophile through which
the catalytic mechanism is initiated. The active site is
partially covered by a solvent-accessible flexible lid.
cPLA2 displays interfacial activation as it exists in
both "closed lid" and "open lid" forms. Movement of the
cPLA2 lid possibly exposes a greater hydrophobic surface
and the active site. cPLA2 belongs to the alpha-beta
hydrolase family which is identified by a characteristic
nucleophile elbow with a consensus sequence of
Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu =
nucleophile). Calcium is required for cPLA2 to bind with
membranes or phospholipids. A calcium-dependent
phospholipid binding domain resides in the N-terminal
region of cPLA2; it is homologous to the C2 domain
superfamily which is not included in this hierarchy.
Includes PLA2G4A from chicken, human, and frog.
Length = 505
Score = 30.9 bits (70), Expect = 2.7
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 4 IDQLEKEAKQNVSKQLLTLLQRSDQLEKVNQYKQRIIRKK 43
++ KE +NVS L LL + + +Y + + KK
Sbjct: 104 PGEINKELMRNVSSSPLLLL----TPQLLKRYTEALWEKK 139
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 30.7 bits (70), Expect = 2.8
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 603 LVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSE 662
L+ R + M +K + F + LK L + ++ + +
Sbjct: 268 LLTIRSLPQMPEKSLAFSTFSWSAL-----------LKRLHQ--MLIAGSFMEEGIDWTV 314
Query: 663 VLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQ----EIRDIVLYVQKTKA 718
+ + +LS + T NK ++ LL LRG + RD +LYV + +
Sbjct: 315 RPEGSAASLLSGNKSTHFNK-------SLANLLILRGKDVTSADERKFRDPLLYVNWSPS 367
Query: 719 NRRFSYSKSLF 729
RFS S
Sbjct: 368 PVRFSISSHKR 378
>gnl|CDD|216616 pfam01628, HrcA, HrcA protein C terminal domain. HrcA is found to
negatively regulate the transcription of heat shock
genes. HrcA contains an amino terminal helix-turn-helix
domain, however this corresponds to the carboxy terminal
domain.
Length = 224
Score = 29.0 bits (66), Expect = 6.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 141 LLHAHQSLMDLEKSRDELMYETHKLSGQSMADKLLLQDYFSDVEKVSQLLE 191
+L ++++ + +E +Y + G S LL Q FSDVEK+ +LLE
Sbjct: 113 VLDLLEAVLSFLEEDEERLY----VGGTS---NLLNQPEFSDVEKLRELLE 156
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Members of this family are 3-isopropylmalate
dehydratase, large subunit, or the large subunit domain
of single-chain forms. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures. All are dehydratases (EC 4.2.1.-) and bind a
Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase
is split into large (leuC) and small (leuD) chains in
eubacteria. Several pairs of archaeal proteins resemble
the leuC and leuD pair in length and sequence but even
more closely resemble the respective domains of
homoaconitase, and their identity is uncertain. These
homologs are now described by a separate model of
subfamily (rather than equivalog) homology type, and the
priors and cutoffs for this model have been changed to
focus this equivalog family more narrowly [Amino acid
biosynthesis, Pyruvate family].
Length = 465
Score = 29.4 bits (66), Expect = 7.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 332 SLEGNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVLKEEVIKELE 380
+LE N+I +TW N PG + N E+ + PV K + L
Sbjct: 278 TLEANDISPQVTWGTN--PGQVLPVNSEVPDPESFADPVDKASAERALA 324
>gnl|CDD|227097 COG4755, COG4755, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 151
Score = 28.4 bits (63), Expect = 7.3
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 425 PVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDALKELKV 474
PV+ M + L+ + +E+ +++ L + H ++Y ++ +E K+
Sbjct: 74 PVVTSVMPREMLRDVESTLREVAIKLIELDIRHTSQYKELISKFSREGKL 123
>gnl|CDD|214663 smart00437, TOP1Ac, Bacterial DNA topoisomerase I DNA-binding
domain. Bacterial DNA topoisomerase I and III,
Eukaryotic DNA topoisomeraes III, reverse gyrase alpha
subunit.
Length = 259
Score = 29.1 bits (66), Expect = 8.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 602 ELVVTRYIAS------MLQKKVIFKNYEERKAAAEKIVKE 635
EL+ R++AS + KV K E+ A K +
Sbjct: 126 ELIWRRFLASQMPDAKYEETKVTIKIGGEKFKAKGKTLLF 165
>gnl|CDD|233103 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type,
tartrate/fumarate subfamily, alpha region. A number of
Fe-S cluster-containing hydro-lyases share a conserved
motif, including argininosuccinate lyase,
adenylosuccinate lyase, aspartase, class I fumarate
hydratase (fumarase), and tartrate dehydratase (see
PROSITE:PDOC00147). This model represents a subset of
closely related proteins or modules, including the E.
coli tartrate dehydratase alpha chain and the N-terminal
region of the class I fumarase (where the C-terminal
region is homologous to the tartrate dehydratase beta
chain). The activity of archaeal proteins in this
subfamily has not been established.
Length = 273
Score = 29.0 bits (65), Expect = 8.8
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 633 VKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLL 680
+ E +K + T + P D + A+ E E+SE+ ++L +L
Sbjct: 1 ITEA--VKEAIKEAVTRL--PEDVVDAIKEAYDREESEIAKINLEAIL 44
>gnl|CDD|237841 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional.
Length = 659
Score = 29.0 bits (65), Expect = 9.6
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 371 LKEEVIKELENKYFKYIQENYVDWMRK 397
L EE IKE++N +FK EN+++W K
Sbjct: 354 LDEEEIKEIKN-HFKKKPENFMEWAEK 379
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.373
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,766,246
Number of extensions: 3648906
Number of successful extensions: 4412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4387
Number of HSP's successfully gapped: 90
Length of query: 733
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 629
Effective length of database: 6,324,786
Effective search space: 3978290394
Effective search space used: 3978290394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.1 bits)