RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12595
(733 letters)
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles,
endocytosis/exocytosis complex; 2.40A {Saccharomyces
cerevisiae}
Length = 399
Score = 221 bits (563), Expect = 3e-65
Identities = 66/381 (17%), Positives = 131/381 (34%), Gaps = 34/381 (8%)
Query: 368 GPVLKEEVIKELENKYFKYIQENYVDWMRKTLETEKEDWKS-CSPPDSDGEGHYHTAAPV 426
G + ++ + L Y I +W+ + E + + +PP SD +G
Sbjct: 1 GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTK 60
Query: 427 IIFQMIDQNLQLTKDISQELTERILLLSVEHVTEY------------------GKMSKDA 468
FQM Q +++ +Q +IL+ VE ++
Sbjct: 61 TCFQMFTQQVEVAAGTNQA---KILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHK 117
Query: 469 LKELKVEHFKDRSKMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKR-SELHRSDASNKFE 527
+ ++IA+ N+ +K + A + + K S+++ +N E
Sbjct: 118 YDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLE 177
Query: 528 ALLKVFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDY-C 586
L F E+ S+ L+ F DL +Q++ + W + Q I TLD+Y D
Sbjct: 178 GTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQ-AQQIADTLDEYLLDIKP 236
Query: 587 HLVGKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKY 646
+ I + +++ ++ + + E + ++ + LF K
Sbjct: 237 QMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKN---KNNKFLEAMKRDFEIFYQLFVKV 293
Query: 647 TTNIDAPLDCILALSEVLKN------EDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGD 700
++ I V++ E + + L Y D D + +L R D
Sbjct: 294 LDGNESKDTLITQNFTVMEFFMDLSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKD 353
Query: 701 LSRQEIRDIVLYVQKTKANRR 721
+S E + IV + R
Sbjct: 354 VSSSERKKIVQQATEMLHEYR 374
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 2e-12
Identities = 95/632 (15%), Positives = 200/632 (31%), Gaps = 154/632 (24%)
Query: 143 HAHQSLMDLEKSRDELMYETHKLSGQSMADKL--LLQDYFSDVEKVSQLLEKQIKLILSR 200
H H MD E + Y+ D L + + + + ++ K ILS+
Sbjct: 1 HHHHHHMDFETGEHQYQYK----------DILSVFEDAFVDNFD--CKDVQDMPKSILSK 48
Query: 201 TLLT-VRKEPTVIVTALRII----EREEHLDQMCMQKKQQSNY----------------- 238
+ + + LR+ ++E + Q +++ + NY
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 239 --------------------MPIGRPKQWRKMAMAVLEESVSQKI--EGTQVDEKGSNKM 276
+ R + + K+ A+LE ++ + +G GS K
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV----LGSGKT 164
Query: 277 WLVMYLELIRQLILEDLRVVTTLCGPCF---PPHYNIVTSFMRMYHDCLSIHLEEMATS- 332
W+ L++ +V + F + N + + M L ++ TS
Sbjct: 165 WVA--LDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSR 216
Query: 333 --------LEGNEIVSMLT--WAVNTYPGP----DMMSNPELGANATPLG-PVL----KE 373
L + I + L Y + N + NA L +L +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKILLTTRFK 275
Query: 374 EVIKELENKYFKYIQENYVDWMRKTLETEKE------DWKSCSPPDSDGEGHYHTAAPVI 427
+V L +I +D TL T E + C P D E T P
Sbjct: 276 QVTDFLSAATTTHI---SLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREV--LTTNPRR 329
Query: 428 IFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDALK--ELKVEHFKDRS---K 482
+ +I ++++ + ++ + +T + S + L+ E + + F S
Sbjct: 330 L-SIIAESIRDGLATW----DNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPP 383
Query: 483 MVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSDASNKFEALLKVFEELRNDSAQ 542
+ +++++ + ++ + + K S + + + E +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 543 YLLEEAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYC--HLVGK--------- 591
Y L + +D H+ + + + + LD YF + HL
Sbjct: 443 YALHRSIVD---HYN--IPKTFDSDDLIPP----YLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 592 -----NLEF----IILEAEELVVTRYIASMLQKKVIFKNY-EERKAAAEKIVKETKQLKN 641
+ F I ++ + I + LQ+ +K Y + E++V + +
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA---ILD 550
Query: 642 LFSKYTTN-IDAPLDCILALSEVLKNEDSEML 672
K N I + +L ++ L ED +
Sbjct: 551 FLPKIEENLICSKYTDLLRIA--LMAEDEAIF 580
Score = 62.9 bits (152), Expect = 3e-10
Identities = 99/603 (16%), Positives = 195/603 (32%), Gaps = 165/603 (27%)
Query: 74 DMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQ-YVTAI---ENLTHVFAVPDSV 129
D +T E+ ++ K+ L V + D + VQ +I E + H+ D+V
Sbjct: 8 DFET-GEHQYQYKDILSVFEDAFVDNFDCK-----DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 130 ERTKQ--WISEGKLLHAHQSLMD--LEKSRDELMYETHKLSGQSMADKLLLQDYFSDVEK 185
T + W K Q ++ L + LM Q + + +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 186 VSQLLEK------QIKLILSRTLLTVRKEPTVIV--------TALRIIEREEHLDQMCMQ 231
+Q+ K Q L L + LL +R V++ T + + +C+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--------DVCLS 173
Query: 232 KKQQSN------YMPIGRPKQWRKMAMAVLE--ESVSQKIE--GTQVDEKGSN------- 274
K Q ++ + VLE + + +I+ T + SN
Sbjct: 174 YKVQCKMDFKIFWLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 275 -KMWLVMYLELIRQ-----LILEDLR--------------VVTTLCGPCFPPHYNIVTSF 314
+ L L+ + L+L +++ ++TT + VT F
Sbjct: 230 IQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTT--------RFKQVTDF 280
Query: 315 MRMYHDCLSIHLEEMATSLEGNEIVSMLTWAVNTYPGPDMMSNPELGANATPLGPVLKEE 374
+ I L+ + +L +E+ S+L ++ P D+ P P + E
Sbjct: 281 LSAATTT-HISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DL---PREVLTTNPRRLSIIAE 335
Query: 375 VIKELEN--KYFKYIQENYVDWMRKT----LETE--KEDWKSCS--PPDSD--------- 415
I++ +K++ + + + ++ LE ++ + S PP +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 416 -GEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVE-----------H---VTE 460
+ V++ ++ +L + K +E T I + +E H V
Sbjct: 396 WFDVIKSDV-MVVVNKLHKYSL-VEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 461 YGKMSKDALKELKVE------------HFKDRSKMVYFTHFMIAMLNNCLKFVE------ 502
Y +L H K+ T F + L+ +F+E
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRFLEQKIRHD 510
Query: 503 ------------LAHQMKQTFWKRSELHRSDASNKFEALLKVFEELRNDSAQYLLEEAFL 550
Q+K F+K + D K+E L+ + + L+ +
Sbjct: 511 STAWNASGSILNTLQQLK--FYKP---YICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 551 DLL 553
DLL
Sbjct: 566 DLL 568
Score = 38.7 bits (89), Expect = 0.008
Identities = 39/266 (14%), Positives = 79/266 (29%), Gaps = 77/266 (28%)
Query: 4 IDQLEKEAKQNVSKQLLTLL--------QRSDQLEKVNQYKQRIIRKKISVETTLKTAMQ 55
L +E + + L+++ D + VN K I + S+ L+ A
Sbjct: 315 PQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLN-VLEPAEY 371
Query: 56 SQL--------DGV-ISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQN 106
++ I L + D+ IK ++ + N L K S + Q
Sbjct: 372 RKMFDRLSVFPPSAHIP-TILLSLIWFDV--IKSDVMVVVNKLH-------KYSLVEKQP 421
Query: 107 NRHVQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMD---LEKSRDE------ 157
+P K + L H+S++D + K+ D
Sbjct: 422 KESTIS------------IPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPP 467
Query: 158 ---------LMYETHKLSGQSMADKL-LLQDYFSDVEKVSQLLEKQIKLILSRTLLTVRK 207
+ + H L +++ L + F D + Q K+ T
Sbjct: 468 YLDQYFYSHIGH--H-LKNIEHPERMTLFRMVFLDFRFLEQ------KIRHDSTAWNASG 518
Query: 208 EPTVIVTALR-----IIEREEHLDQM 228
+ L+ I + + +++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERL 544
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 3e-10
Identities = 77/425 (18%), Positives = 128/425 (30%), Gaps = 143/425 (33%)
Query: 403 KEDWKSCSPPDSDG-EGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEY 461
+E + P ++G P EL + L V + E
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPA------------------ELVGKFLGY-VSSLVEP 74
Query: 462 GKMSK-DALKELKVEHFKDRSKMVYFT----HFMIAML-----------NNCLK-FVELA 504
K+ + D + L + F++ Y H + A L +K ++
Sbjct: 75 SKVGQFDQVLNLCLTEFENC----YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 505 HQMKQTFWKR--SELHRSDASNKFE--ALL-------KVFEELRN--------------D 539
K+ F K+ S L R+ + A+ FEELR+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 540 SAQYLLEEAF--LDLLPHFQ---DLMTAKWL-------------TSTVSIQTICMT-LDD 580
SA+ L E LD F +++ +WL + +S I + L
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNIL--EWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 581 YFQDYCHLVGKN-------LEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIV 633
Y L+G L+ ++ LV IA ++E + K
Sbjct: 249 YV-VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET-------DSWESFFVSVRKA- 299
Query: 634 KETKQLKNLFS------KYTTNIDAPLDCILALSEVLKNED---SEMLS---LDLHTL-- 679
+ LF + N P L + L+N + S MLS L +
Sbjct: 300 -----ITVLFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 680 ----LNKY-PDISDDHIS-----RLLTLRG---DLSRQEIRDIVLYVQKTKANRRFSYSK 726
N + P IS + L + G L + L ++K KA S+
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-----LNLTLRKAKAPSGLDQSR 406
Query: 727 SLFHK 731
F +
Sbjct: 407 IPFSE 411
Score = 47.4 bits (112), Expect = 2e-05
Identities = 79/530 (14%), Positives = 154/530 (29%), Gaps = 224/530 (42%)
Query: 118 NLTHVFAVPDSVERTKQWISEGKLLHAHQ-------SL--------MDLE-KSRDELM-- 159
+L HV VP T + A Q L D E + EL+
Sbjct: 15 SLEHVLLVP-----TASFF------IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 160 ---YETHKLSGQSMAD-----KLLLQDYFS------DVEK-VSQLLEKQIKLILSRTLL- 203
Y + + + L L ++ + D+ ++LL++ ++ L
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 204 ---------TVRKEPTVIVTAL---------RII-------EREEHLDQMCMQKKQQSNY 238
R +AL +++ +++ +++ + Y
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL---RDLYQTY 180
Query: 239 MPIGRPKQWRKMAMAVLEESVSQKIEGTQVDEKGSNKM-WL--------VMYLE------ 283
+ K + L E + ++ +V +G N + WL YL
Sbjct: 181 HVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 284 -LIRQLILEDLRVVTTLCGPCFPPHYNIVT--------SFMRMYHDCLSIHLEE------ 328
LI V L HY +VT +R Y + H +
Sbjct: 239 PLI---------GVIQLA------HY-VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 329 --MATSLE-----GNEIVSMLTW----AVNTYPG----PDMMSNPELGANATPLGPVL-- 371
S E + +++L + YP P ++ + P P+L
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSI 341
Query: 372 ----KEEVIKELE--NKYFK-----YI-----QENYV--------DWMRKTLETEKEDWK 407
+E+V + N + I +N V + TL K
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR------K 395
Query: 408 SCSPPDSD------GE-----GH--------YHT-----AAPVI---------------- 427
+ +P D E + +H+ A+ +I
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 428 ---IFQMID-QNLQ-LTKDISQELTERILLLSVE----------HVTEYG 462
++ D +L+ L+ IS+ + + I+ L V+ H+ ++G
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Score = 43.9 bits (103), Expect = 2e-04
Identities = 36/219 (16%), Positives = 61/219 (27%), Gaps = 81/219 (36%)
Query: 545 LEEAFL---DLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYCHLVGKNLEFIILEAE 601
LE L L + + T DD LVGK L ++ E
Sbjct: 16 LEHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 602 ELVVTRY------------------------IASML--------QKKVIFKNY------E 623
V ++ A +L + K + KNY
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 624 ER-----------KAAAEKIVK-----------ET--KQLKNLFSKYTTNIDAPLDCILA 659
+R +A E + + ++L++L+ Y + D I
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG---DLIKF 190
Query: 660 LSEVLKN-----EDSEML---SLDLHTLL---NKYPDIS 687
+E L D+E + L++ L + PD
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Score = 41.6 bits (97), Expect = 0.001
Identities = 55/315 (17%), Positives = 83/315 (26%), Gaps = 119/315 (37%)
Query: 383 YF-----KYIQENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVIIFQMIDQNLQ 437
+F K I+ENY ET + + H + F+ L
Sbjct: 1675 HFGGEKGKRIRENY---SAMIFETIVDGKLKTEKIFKEINEH----STSYTFRSEKGLLS 1727
Query: 438 LTKDISQELTERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVYFTHFMIAMLNNC 497
T + T+ L L M K A ++LK +
Sbjct: 1728 AT-----QFTQPALTL----------MEKAAFEDLKSKGLIPADATF------------- 1759
Query: 498 LKFVELA-HQMKQTFWKRS--E---L-HRSDA-SNKFEALLK-VFEELRNDSAQYLLEEA 548
A H S E L +D S E+L++ VF R + Q +
Sbjct: 1760 ------AGH---------SLGEYAALASLADVMS--IESLVEVVF--YRGMTMQVAVPR- 1799
Query: 549 FLDLLPHFQDLMTAKWLTSTVSIQTICMTLD-DYFQDYCHLVGKNLEFIILEAEELVVTR 607
D L M A ++ + + + Q VGK LV
Sbjct: 1800 --DELGRSNYGMIA------INPGRVAASFSQEALQYVVERVGK-------RTGWLV--- 1841
Query: 608 YIASMLQKKVIFKNYEER---------KAAAEKIVKETKQLKNLFSKYTTNIDAPLDCIL 658
I NY A + + +K ID I+
Sbjct: 1842 EIV----------NYNVENQQYVAAGDLRALDTVTNVLNFIK------LQKID-----II 1880
Query: 659 ALSEVLKNED-SEML 672
L + L E+ L
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 40.8 bits (95), Expect = 0.002
Identities = 39/213 (18%), Positives = 67/213 (31%), Gaps = 85/213 (39%)
Query: 535 ELRNDS--AQYLLEEAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYCHLVGKN 592
+L S AQ + A D HF+D T SI I +++ H G+
Sbjct: 1634 DLYKTSKAAQDVWNRA--DN--HFKD-------TYGFSILDIV--INNPVNLTIHFGGEK 1680
Query: 593 LEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDA 652
+ I E Y A M IF+ + K EKI KE + + YT +
Sbjct: 1681 GKRI---RE-----NYSA-M-----IFETIVDGKLKTEKIFKE---INEHSTSYT--FRS 1721
Query: 653 P---LD-------CILALS----EVLKNE----------------------DSEMLSLDL 676
L + + E LK++ ++++S++
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE- 1780
Query: 677 HTLLNKYPDISDDHISRLLTLRGDLSRQEI-RD 708
+ ++ RG + + RD
Sbjct: 1781 ------------SLV-EVVFYRGMTMQVAVPRD 1800
Score = 38.1 bits (88), Expect = 0.012
Identities = 79/476 (16%), Positives = 142/476 (29%), Gaps = 154/476 (32%)
Query: 318 YHDCLSIHLEEMATS-LEGNEI----VSMLT-----------WAVNTYPGPDMMSNPELG 361
+ L++ L E LEGN+I +L N M P
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 362 ANATPLGPVLKEEVIKEL---------ENKYFKYIQENY----------VDWMRKTLETE 402
+ + L + E + L + YF+ +++ Y + + +TL
Sbjct: 140 KSNSALFRAVGEGNAQ-LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 403 KED----------------W--KSCSPPDSDGEGHYHTAAPV---IIFQMIDQNLQLTKD 441
W + PD D Y + P+ +I +QL
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKD----YLLSIPISCPLIGV-----IQLA-- 247
Query: 442 ISQELTERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVYFTHFMIAM-------L 494
+T ++L + + + LK H + +V T IA
Sbjct: 248 -HYVVTAKLLGFTPGEL-------RSYLKGATG-HSQG---LV--TAVAIAETDSWESFF 293
Query: 495 NNCLKFVELAHQMKQTFW--KRSELHRSDASNKFEA-LLKVFEELRNDSAQYLLEEAFLD 551
+ K + + F+ R + + + +L+ E +L + +
Sbjct: 294 VSVRKAITVL------FFIGVRC--YEAYPNTSLPPSILEDSLENNEGVPSPML--SISN 343
Query: 552 L-LPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVTRYIA 610
L QD + L Q LV N A+ LVV+
Sbjct: 344 LTQEQVQDY-----------VNKTNSHLPAGKQVEISLV--N------GAKNLVVSGPPQ 384
Query: 611 SM--LQKKVIFKNYEERKAAAEKIVKETKQLKNLFSK----YTTN---IDAPLDCIL--- 658
S+ L + RKA A Q + FS+ ++ + +P L
Sbjct: 385 SLYGLNLTL-------RKAKAP---SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 659 ALSEVLKNEDSEMLSLDLHTLLNKYP--DISD--DHISRLLTLRGDLSRQEIRDIV 710
A + K+ +S + + + P D D D L L G +S + + I+
Sbjct: 435 ASDLINKDLVKNNVSFNAKDI--QIPVYDTFDGSD----LRVLSGSISERIVDCII 484
Score = 35.8 bits (82), Expect = 0.066
Identities = 58/319 (18%), Positives = 89/319 (27%), Gaps = 121/319 (37%)
Query: 95 LGLKLSDLRAQNN---RHVQY-VTAIENLTHVFAVPDS----VERTKQ------WISEGK 140
LG +LR+ H Q VTA+ A DS ++ +I G
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAV-----AIAETDSWESFFVSVRKAITVLFFI--G- 307
Query: 141 LLHAHQ---------SLMDLEKSRDE----LMYETHKLS--GQSMADKLLLQDYFSDVEK 185
+ ++ S+++ +E M LS + +QDY V K
Sbjct: 308 -VRCYEAYPNTSLPPSILEDSLENNEGVPSPM-----LSISNLTQEQ---VQDY---VNK 355
Query: 186 VSQLL--EKQIKLIL--SRTLLTVRKEP---TVIVTALRIIEREEHLDQ----MCMQKKQ 234
+ L KQ+++ L L V P + LR + LDQ +K +
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 235 QSN-YMPIGRPKQWRKMAMAVLEESVSQKIEGTQVDEKGSNKMWLVMYLELIRQLILEDL 293
SN ++P+ P S L LI +DL
Sbjct: 416 FSNRFLPVASP-----------FHS---------------------HLLVPASDLINKDL 443
Query: 294 RVVTTLCGPC---FPPHYNIVTSFMRMYHDCLSIHLEEMATSLEGNEIVSMLT-----W- 344
P V Y L ++ S+ IV + W
Sbjct: 444 VKNNVSFNAKDIQIP-----V------YDTFDGSDLRVLSGSISER-IVDCIIRLPVKWE 491
Query: 345 -AVNTYP------GPDMMS 356
GP S
Sbjct: 492 TTTQFKATHILDFGPGGAS 510
Score = 30.8 bits (69), Expect = 2.2
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 14/59 (23%)
Query: 106 NNRHVQYVT-----AIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKSRDELM 159
N + QYV A++ +T+V + ++ K I ++ +SL LE+ L
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVL---NFIKLQK--I---DIIELQKSLS-LEEVEGHLF 1896
Score = 29.6 bits (66), Expect = 5.1
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 21/83 (25%)
Query: 368 GPVLKEEVIKELENKYFKYIQENYVDWMRKT-------LETEK---EDWKS--CSPPDSD 415
G + E++ KE+ Y + + T EK ED KS P D+
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 416 GEGH----YHTA----APVIIFQ 430
GH Y A A V+ +
Sbjct: 1759 FAGHSLGEY-AALASLADVMSIE 1780
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.011
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 334 EGNEIVSMLTWAVNTYPGPDMMSNPELGANAT 365
E + L ++ Y D S P L AT
Sbjct: 18 EKQAL-KKLQASLKLY-ADD--SAPALAIKAT 45
Score = 32.2 bits (72), Expect = 0.24
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 630 EKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLK 665
EK + K+L+ Y + AP LA+ ++
Sbjct: 18 EK--QALKKLQASLKLYADD-SAP---ALAIKATME 47
Score = 31.5 bits (70), Expect = 0.53
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 79 KENIHEMKNSLQVL-----PPLGLKLS 100
K+ + +++ SL++ P L +K +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
Score = 30.3 bits (67), Expect = 1.3
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 15/44 (34%)
Query: 508 KQTFWKRSELHRSDASNKFEALLKVFEELRNDSAQYLLEEAFLD 551
KQ K K +A LK++ + DSA L +A ++
Sbjct: 19 KQAL-K-----------KLQASLKLYAD---DSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 3.1
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 34/56 (60%)
Query: 372 KEEVIKELENKYFKYIQENYVDWMRKTLETEKEDWKSCSPPDSDGEGHYHTAAPVI 427
K+ +K+L+ Y DS AP +
Sbjct: 19 KQA-LKKLQASLKLY------------------------ADDS---------APAL 40
>3osq_A Maltose-binding periplasmic protein, green fluore protein;
engineered protein, sensor protein, fluorescent protein,
MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia
coli}
Length = 661
Score = 34.8 bits (79), Expect = 0.10
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 52 TAMQSQLDGVISGIQELKTVLEDMQ-TIKENIHEMKNS 88
A+++ + SG Q + L+D Q I + H +
Sbjct: 623 YAVRTAVINAASGRQTVDEDLKDAQTRITKGSHHHHHH 660
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease
5'-3', R interference; 3.20A {Drosophila melanogaster}
Length = 1140
Score = 33.4 bits (75), Expect = 0.37
Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 27/187 (14%)
Query: 382 KYFKYIQENYVDWMRKTLETEKEDWK-----------SCSPPDSDGEGHYHTAAPVI--I 428
K+F+YI E Y E ++ +CS PD + + + I
Sbjct: 5 KFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEI 64
Query: 429 FQMIDQNLQLTK-------------DISQELTERILLLSVEHVTEYGKMSKDALKELKVE 475
F +D+ L K ++ +R E + EL+
Sbjct: 65 FNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAKAAQRGELREH 124
Query: 476 HFKDRSKMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSDASNKFEALLKVFEE 535
D + + T FM L L+ W+R + S E K+ +
Sbjct: 125 ERFDSNCITPGTEFM-VRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDY 183
Query: 536 LRNDSAQ 542
+R Q
Sbjct: 184 IRYMKTQ 190
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.5 bits (74), Expect = 0.55
Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 26/203 (12%)
Query: 6 QLEKEAKQNVSKQLLTLLQRSDQLEKVN---QYKQRIIRKKISVETTLKTAMQSQLDGVI 62
Q E E + + L + +LE++ + + ++ K MQ Q+ +
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 63 SGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHVQYVTAIENLT-- 120
++E + + +Q K ++ D+ +++ + + L
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKME---------DDILIMEDQNNKLTKERKLLEER 1012
Query: 121 HVFAVPDSVERTKQWISEGKLLHAHQSLMD--------LEKSRDELMYETHKLSGQSMAD 172
+ E ++ + KL + H+S++ EKSR EL KL G +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG----E 1068
Query: 173 KLLLQDYFSDVEKVSQLLEKQIK 195
L + ++++ L+ Q+
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLA 1091
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 31.7 bits (72), Expect = 0.89
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 52 TAMQSQLDGVISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDL-RAQNNRHV 110
A+++ + SG Q + L QT + ++ L G+ L R +
Sbjct: 342 YAVRTAVINAASGRQTVDAALAAAQTNAAAMDDLDALLADKEGGGMDLKPFARTNPFSGL 401
Query: 111 QYVTAIENLTHVFAVPDSVERTKQWISEG 139
+ E LT V A V+ I EG
Sbjct: 402 DCLWCREPLTEVDAFRCMVKDFHVVIREG 430
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 31.4 bits (72), Expect = 0.91
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 627 AAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDI 686
AA K+ +E +L+ + ++++ L +L L E L E+ E L +L K +
Sbjct: 43 EAARKVSQEAARLRRTVDTF-RSLESDLQGLLELMEELPAEEREALKPELEEAAKK---L 98
Query: 687 SDDHISRLLT 696
+ + LL
Sbjct: 99 DELYHQTLLN 108
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 30.7 bits (70), Expect = 1.8
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 626 KAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKY-P 684
A+ + KE L+ + + L+ + L E+ D E + L+
Sbjct: 50 PERAQALGKERSSLEAVVDTL-DQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEE 108
Query: 685 DISDDHISRLLT 696
++ R+ +
Sbjct: 109 KLAQLEFRRMFS 120
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 168
Score = 29.9 bits (67), Expect = 2.1
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 369 PVLKEEVIKELENKYFKYIQEN------YVDWMRKTLETEKEDWKSCSPPDSDGEGHYH- 421
P + E+ L KY + + + L + ++ +G Y
Sbjct: 73 PDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLL 132
Query: 422 ---TAAPVIIFQMIDQNLQLTKDI 442
P I + + L D+
Sbjct: 133 FTYFTKPESISPL-EAALVTDDDV 155
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting,
transferase; HET: ADP; 2.30A {Thermococcus litoralis}
SCOP: c.72.1.3
Length = 467
Score = 30.4 bits (68), Expect = 2.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 61 VISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLK 98
+ISG+Q LK D T K+ + +++ L +L +K
Sbjct: 238 IISGLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVK 275
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 30.4 bits (69), Expect = 2.5
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 1 MSTIDQLEKEAKQNVSKQLLTLLQRSDQLEKVNQYKQRIIRKKISVETTLKTAMQSQLDG 60
+S ID LEK + V +L +Q +K+ + + +D
Sbjct: 208 ISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDF----------------VKIDGSVDD 251
Query: 61 VISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLKLSDLR 103
V+ ++ L L + + + E++ + + LG+
Sbjct: 252 VLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFC 294
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 30.0 bits (68), Expect = 2.5
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 650 IDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYP------DISDDHISRLLTLRG 699
I+ P D I A + ++N D ++DL+ + ++ I + + + G
Sbjct: 63 IEKPDDVIRAAQQAIRNIDRLRKNVDLNIRFSGISNVIPLRELRSKFIGKFVAVDG 118
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 29.8 bits (67), Expect = 3.5
Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 4/147 (2%)
Query: 52 TAMQSQLDGVISGIQELKTVLEDMQT-IKENIHEMKNSL-QVLPPLGLKLSDLRAQNNRH 109
A+++ + SG Q + L QT N + ++ R +
Sbjct: 341 YAVRTAVINAASGRQTVDEALAAAQTNAAAEFMSKINDINDLVNATFQVKKFFRDTKKKF 400
Query: 110 VQYVTAIENLTHVFAVPDSVERTKQWISEGKLLHAHQSLMDLEKSRD-ELMYETHKLSGQ 168
I L H+ +S E + + I++ + L+K +D +L+ + L +
Sbjct: 401 NLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDE 459
Query: 169 SMADKLLLQDYFSDVEKVSQLLEKQIK 195
+ ++++K+ LE+ IK
Sbjct: 460 RTVIVYVTDTQKANIQKLISELEEYIK 486
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 29.2 bits (66), Expect = 4.2
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 322 LSIHLEEMATSLEGNEIVSMLTWAVNTYPGPDMMS 356
+ L E LE + + WA++ PG ++S
Sbjct: 16 RILALAETNAELEKLDAEGRVAWALDNLPGEYVLS 50
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary
adenylate cyclase 1 receptor-short...; G-protein coupled
receptor; HET: MAL; 1.80A {Escherichia coli} PDB:
3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Length = 475
Score = 29.4 bits (66), Expect = 4.2
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 52 TAMQSQLDGVISGIQELKTVLEDMQT-IKENIHEMKNSLQVLPPLGLKLSDLRAQNNRHV 110
A+++ + SG Q + L+D QT K + + ++L N+
Sbjct: 343 YAVRTAVINAASGRQTVDEALKDAQTNAAAEFAIFKKEQAMCLEKIQRANELMGFNDSSP 402
Query: 111 QYVTAIENLT 120
+N+T
Sbjct: 403 GCPGMWDNIT 412
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 29.3 bits (66), Expect = 4.3
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 322 LSIHLEEMATSLEGNEIVSMLTWAVNTYPGPDMMS 356
+ L E LE + + WA++ PG ++S
Sbjct: 17 RILALAETNAELEKLDAEGRVAWALDNLPGEYVLS 51
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 29.3 bits (66), Expect = 4.4
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 371 LKEEVIKELENKYFKYIQEN-YVDWMRKTLETEKEDWK-SCSPPDSDGEG 418
L+E+ + + +K+I+ N + ++ E + +C D + G
Sbjct: 7 LQEDRKNDKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATDENPCG 56
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.1 bits (65), Expect = 4.9
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 297 TTL--CGPCFPPHYNIVTSFMRMYHD----CLSIHLEEMAT 331
TL G FPP Y + S +++Y+D L EE+A
Sbjct: 6 VTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAG 46
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 28.5 bits (63), Expect = 6.8
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 325 HLEEMATSLEGNEIVSMLTWAVNTYPGPDMMS 356
L +A+SL +L A + +S
Sbjct: 29 DLPALASSLADKSPQDILKAAFEHFGDELWIS 60
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate
synthase, structural genomics, structural genomics
consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium
parvum} PDB: 2o1o_A* 2q58_A*
Length = 368
Score = 28.6 bits (64), Expect = 7.5
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 610 ASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDS 669
A K I +NY + + + K + + +Y + + L +++K+
Sbjct: 285 ADEEMKLKISENYGKNSSLVKDCYNLLK-INEHYLEYQR------NALDYLIKLVKDITD 337
Query: 670 EMLSLDLHTLLNK 682
+ L L+++
Sbjct: 338 DSLQKVFIHLIHQ 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.373
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,837,608
Number of extensions: 658365
Number of successful extensions: 1868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1832
Number of HSP's successfully gapped: 82
Length of query: 733
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 632
Effective length of database: 3,881,772
Effective search space: 2453279904
Effective search space used: 2453279904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.5 bits)