RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12595
(733 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 35.5 bits (81), Expect = 0.027
Identities = 41/299 (13%), Positives = 92/299 (30%), Gaps = 8/299 (2%)
Query: 414 SDGEGHYHTAAPVIIFQMIDQNLQLTKDISQELTERILLLSVEHVTEYGKMSKDALKELK 473
+D TAA +I + +N + K R+ + T+ + +
Sbjct: 189 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPW 248
Query: 474 VEHFKDRSKMVYFTHFMIAMLNNCLKFVELAHQMKQTFWKRSELHRSDASNK--FEALLK 531
+ R Y A+ + +E Q K ++ S+A N FEA+
Sbjct: 249 LSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISL 308
Query: 532 VFEELRNDSAQYLLEEAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYCHLV-- 589
+ + L H + + L S ++ + + + + + V
Sbjct: 309 IIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE-AVKTHIETVIN 367
Query: 590 -GKNLEFIILEAEELVVTRYIASMLQKKVIFKNYEERKAAAEKIVKE--TKQLKNLFSKY 646
K + + + + + + I A+ ++E ++ L KY
Sbjct: 368 ALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKY 427
Query: 647 TTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPDISDDHISRLLTLRGDLSRQE 705
+ +D IL L + + SE + + ++ D+ + + E
Sbjct: 428 AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHE 486
>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
epsilon {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 161
Score = 31.0 bits (70), Expect = 0.23
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 17/127 (13%)
Query: 577 TLDDYFQDYCHLVGKNLEFIILE---------AEELVVTRYIASMLQKKVIFKNYEERKA 627
T++ ++ +L+ +LE V + L ++V +
Sbjct: 9 TVERAMEN-----NHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLG 63
Query: 628 AAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLLNKYPD-- 685
+ +VK Q LF + + + +D + + E + + + L L + L D
Sbjct: 64 PKDAVVKVFNQWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDND 123
Query: 686 -ISDDHI 691
I +D I
Sbjct: 124 IIEEDVI 130
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.7 bits (67), Expect = 1.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 297 TTL--CGPCFPPHYNIVTSFMRMYHD----CLSIHLEEMAT 331
TL G FPP Y + S +++Y+D L EE+A
Sbjct: 6 VTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAG 46
>d2fika2 d.19.1.1 (A:8-185) CD1, alpha-1 and alpha-2 domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 178
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 347 NTYPGPDMMSNPELGANATPLGPVLKEEVIKELE-NKYFKYIQENY-----VDWMRKTLE 400
+ G ++ P P + IK L ++ + ++R LE
Sbjct: 111 VAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLNDTCPLFVRGLLE 170
Query: 401 TEKED 405
K D
Sbjct: 171 AGKSD 175
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.3 bits (66), Expect = 1.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 297 TTL--CGPCFPPHYNIVTSFMRMYHD----CLSIHLEEMAT 331
L GP F P Y + ++ Y+D LS EE+AT
Sbjct: 18 KFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSPKAEEVAT 58
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 27.5 bits (61), Expect = 2.9
Identities = 9/59 (15%), Positives = 17/59 (28%)
Query: 616 KVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSEMLSL 674
+ + + V K L KY + L + AL ++ + L
Sbjct: 48 TAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCDEQKELQALYALQALVVTLEQPPNLL 106
>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 318
Score = 28.0 bits (62), Expect = 3.6
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 19/167 (11%)
Query: 438 LTKDISQELT---ERILLLSVEHVTEYGKMSKDALKELKVEHFKDRSKMVYFTHFMIAML 494
L D+ ELT E++++ ++ Y DA ELK + T + +
Sbjct: 62 LVNDMKSELTGKFEKLIVALMKPSRLY-----DA-YELKHALKGAGTDEKVLTEIIASRT 115
Query: 495 NNCLKFVELAHQMKQTFWKRS--ELHRSDASNKFEALLKVFEELRNDSAQYLLEEAFLDL 552
L+ ++ A++ + + + D S ++ +L V + D + +
Sbjct: 116 PEELRAIKQAYE---EEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELD 172
Query: 553 LPHFQDLMTAKWLTSTVSIQTICMTLDDY-----FQDYCHLVGKNLE 594
KW T TI T F Y + G +E
Sbjct: 173 AQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIE 219
>d1zs8a2 d.19.1.1 (A:1-180) Class I MHC, alpha-1 and alpha-2 domains
{Mouse (Mus musculus), H-2M10 [TaxId: 10090]}
Length = 180
Score = 27.7 bits (61), Expect = 4.3
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 309 NIVTSFMRMYHDCLSIH-LEEMATSLEGNEIVSMLTWAVNTYPGPDMMS-NPELGAN--A 364
++ + H L+E+ ++ + TY G D + N +L +
Sbjct: 76 TLIYMVTENNNKKNDYHTLQEVFGCNVAHDGSFLGGHYGLTYYGYDYIILNEDLNSWTTE 135
Query: 365 TPLGPVLKEEVIKELENKYFK-YIQENYVDWMRKTLETEKE 404
+G + + + ++ Y++ + + L+ KE
Sbjct: 136 GKVGGKFNPDRTQGSVTEGWRTYLKGECTERFLRCLDLGKE 176
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 27.9 bits (61), Expect = 4.3
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 33 NQYKQRIIRKKISVETTLKTAMQSQLDGVISG------IQELKTVLEDMQTIKENIHEMK 86
K + IS +K Q DGVI G + E + + ++ ++E MK
Sbjct: 198 VTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMK 257
Query: 87 NSL 89
N+L
Sbjct: 258 NAL 260
>d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 467
Score = 28.3 bits (63), Expect = 4.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 61 VISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLK 98
+ISG+Q LK D T K+ + +++ L +L +K
Sbjct: 238 IISGLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVK 275
>d1jfma_ d.19.1.1 (A:) NK cell ligand RAE-1 beta {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 174
Score = 27.2 bits (60), Expect = 4.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 381 NKYFKYIQENYVDWMRKTLETEKE 404
K K++ M + L+ KE
Sbjct: 150 VKQLKFLIHECSQKMDEFLKQSKE 173
>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 451
Score = 27.5 bits (61), Expect = 5.9
Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 622 YEER-KAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKNEDSEMLSLDLHTLL 680
+E + A +K+ ++++ + Y TNIDA + LK ED E + +
Sbjct: 1 WESLYEKALDKVEASIRKVRGVLLAYNTNIDA--------IKYLKREDLEKR---IEKVG 49
Query: 681 NKYPDISDDHISRLLTLRGDLSRQEIRDIVLYVQKTKANRRFSYSKSLF 729
+ + + + + L + I+ +++ KA S+ +
Sbjct: 50 KEEVLRYSEELPKEIETIPQL----LGSILWSIKRGKAAELLVVSREVR 94
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 27.0 bits (59), Expect = 7.7
Identities = 14/145 (9%), Positives = 30/145 (20%), Gaps = 19/145 (13%)
Query: 547 EAFLDLLPHFQDLMTAKWLTSTVSIQTICMTLDDYFQDYCHLVGKNLEFIILEAEELVVT 606
E + K++ S V I+ Y + +
Sbjct: 106 ENSKQEYETVVNHFQDKYVCSNVDIRLDNGLFVPLGLKYKYFTTPIRGIRV----MAFGF 161
Query: 607 RYIASMLQKKVIFKNYEERKAAAEKIVKETKQLKNLFSKYTTNIDAPLDCILALSEVLKN 666
+ E E +E + + D I+ + +
Sbjct: 162 LFDFKRFNSGTRVTPMAE--TIHEPWFQEALKHEV-------------DLIIIVGHTPIS 206
Query: 667 EDSEMLSLDLHTLLNKYPDISDDHI 691
+ L +PD +
Sbjct: 207 HNWGEFYQVHQYLRQFFPDTIIQYF 231
>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 450
Score = 27.1 bits (60), Expect = 9.0
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 61 VISGIQELKTVLEDMQTIKENIHEMKNSLQVLPPLGLK 98
+ SG Q L+T D + + K + +K
Sbjct: 219 IFSGYQGLRTKYSDGKDANYYLRRAKEDIIEFKEKDVK 256
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.373
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,625,791
Number of extensions: 124981
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 45
Length of query: 733
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 641
Effective length of database: 1,144,436
Effective search space: 733583476
Effective search space used: 733583476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)