BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12599
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAA 221
EMRRRR EV VELRK K++E + KRRNV A S +++ VN + +V+
Sbjct: 26 EMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGI 85
Query: 222 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 86 NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 132
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRN-VPLADSTDEDDIEKMAQVNLDMLVVEAARKDN 225
E+RRRR+ VELRK KR+E L KRRN +P D D D+ E + V+ D +++
Sbjct: 31 ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDE-EDESSVSADQQFYSQLQQEL 89
Query: 226 PEL-----------QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECL 264
P++ QL A R++LS + PPI+ +I +G++P LVE +
Sbjct: 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 15/112 (13%)
Query: 166 KEMRRRRNEVTVELRKNKREETLQKRRN--------VPLADSTDEDD-IEKMAQVNLDML 216
+E RRRR + VE+RK++REE+L K+R VP + +T D +E + +
Sbjct: 25 EEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAM----- 79
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+ D+ LQL A RKLLS +++PPIE +I SG++P V+ L R D
Sbjct: 80 -IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED 130
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 185 EETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAARKDNPELQLLAVQSARKL 239
+E + KRRNV A S +++ VN + +V+ +N E QL A Q+ARKL
Sbjct: 1 DEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 60
Query: 240 LSSDKNPPIEALIHSGILPVLVECLERSD 268
LS +K PPI+ +I +G++P V L ++D
Sbjct: 61 LSREKQPPIDNIIRAGLIPKFVSFLGKTD 89
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 199 STDEDDIEKMAQVNLDML------VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI 252
TD+DD + MA + + +V+ +N E QL A Q+ARKLLS +K PPI+ +I
Sbjct: 23 GTDDDD-KAMADIGSGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII 81
Query: 253 HSGILPVLVECLERSD 268
+G++P V L ++D
Sbjct: 82 RAGLIPKFVSFLGKTD 97
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 199 STDEDDI------EKMAQVNLDML-VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEAL 251
TD+DD+ VN + +V+ +N E QL A Q+ARKLLS +K PPI+ +
Sbjct: 37 GTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI 96
Query: 252 IHSGILPVLVECLERSD 268
I +G++P V L ++D
Sbjct: 97 IRAGLIPKFVSFLGKTD 113
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 199 STDEDDI------EKMAQVNLDML-VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEAL 251
TD+DD+ VN + +V+ +N E QL A Q+ARKLLS +K PPI+ +
Sbjct: 37 GTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI 96
Query: 252 IHSGILPVLVECLERSD 268
I +G++P V L ++D
Sbjct: 97 IRAGLIPKFVSFLGKTD 113
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ N E QL A Q+ARKLLS +K PPI+ +I +G++P V L R+D
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTD 64
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 99
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 63
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 62
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 63
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 62
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 63
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 58
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 58
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 199 STDEDDIEKMAQVNLDM-LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGIL 257
TD+DD + MA + + ++ D+ LQL A RKLLS +++PPIE +I SG++
Sbjct: 23 GTDDDD-KAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVV 81
Query: 258 PVLVECLERSD 268
P V+ L R D
Sbjct: 82 PRFVQFLTRED 92
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLER 266
++E +PE QL A Q RKLLS + NPPI+ +I + G++ VE L+R
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR 72
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLER 266
++E +PE QL A Q RKLLS + NPPI+ +I + G++ VE L+R
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKR 75
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVP 195
EMRRRR EV VELRK K+++ + KRRNV
Sbjct: 16 EMRRRRIEVNVELRKAKKDDQMLKRRNVS 44
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 229 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVE 262
QL A R++LS + PPI+ +I +G++P LVE
Sbjct: 17 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 50
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 229 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVE 262
QL A R++LS + PPI+ +I +G++P LVE
Sbjct: 17 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 50
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 229 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVE 262
QL A R++LS + PPI+ +I +G++P LVE
Sbjct: 18 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 51
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 229 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVE 262
QL A R++LS + PPI+ +I +G++P LVE
Sbjct: 18 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 51
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 229 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVE 262
QL A R++LS + PPI+ +I +G++P LVE
Sbjct: 16 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 49
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 229 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVE 262
QL A R++LS + PPI+ +I +G++P LVE
Sbjct: 16 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 49
>pdb|1QGR|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 27
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 169 RRRRNEVTVELRKNKREETLQKRRNVP 195
RRRR EV VELRK K+++ + KRRNV
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNVS 27
>pdb|3C85|A Chain A, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|B Chain B, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|C Chain C, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
pdb|3C85|D Chain D, Crystal Structure Of Trka Domain Of Putative
Glutathione-regulated Potassium-efflux Kefb From Vibrio
Parahaemolyticus
Length = 183
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 167 EMRRRRNEVT--VELRKNKREETLQKRRNVPLADSTDEDDIEKM---AQVNLDMLVVEAA 221
E+R R +++ +E+R+ ++ + RNV D+TD D E++ V L +L
Sbjct: 57 ELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAXPHH 116
Query: 222 RKDNPELQLLAVQSARKLLSSDKNPP--IEALIHSGI 256
+ + L+ L ++ + +++ P +E L+ SG+
Sbjct: 117 QGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGV 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,751,983
Number of Sequences: 62578
Number of extensions: 245140
Number of successful extensions: 617
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 55
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)