Query psy12599
Match_columns 269
No_of_seqs 168 out of 492
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 23:25:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 99.9 1.2E-23 2.6E-28 201.5 9.1 103 164-267 21-126 (526)
2 KOG0166|consensus 99.8 1.3E-20 2.9E-25 186.0 9.7 109 158-268 13-122 (514)
3 PF15375 DUF4602: Domain of un 99.6 4E-15 8.6E-20 123.3 5.4 54 115-168 36-91 (135)
4 PF01749 IBB: Importin beta bi 99.5 3.6E-15 7.8E-20 118.2 3.0 71 164-235 19-97 (97)
5 KOG0166|consensus 96.1 0.0095 2.1E-07 60.4 5.6 56 211-268 237-292 (514)
6 cd00020 ARM Armadillo/beta-cat 94.4 0.099 2.2E-06 39.1 5.1 55 212-268 50-104 (120)
7 COG5064 SRP1 Karyopherin (impo 94.1 0.079 1.7E-06 52.7 5.1 56 211-268 243-298 (526)
8 PLN03200 cellulose synthase-in 92.9 0.16 3.4E-06 59.0 5.6 53 212-267 190-243 (2102)
9 PF00514 Arm: Armadillo/beta-c 92.7 0.091 2E-06 34.7 2.1 22 247-268 4-25 (41)
10 cd00020 ARM Armadillo/beta-cat 88.0 1.4 3.1E-05 32.8 5.3 53 215-268 10-62 (120)
11 PLN03200 cellulose synthase-in 82.7 1.7 3.8E-05 50.9 5.0 55 212-268 447-501 (2102)
12 KOG4224|consensus 78.4 3.5 7.5E-05 41.7 4.9 50 215-266 254-303 (550)
13 smart00185 ARM Armadillo/beta- 75.5 2.8 6E-05 26.4 2.3 22 247-268 4-25 (41)
14 PF00514 Arm: Armadillo/beta-c 61.8 13 0.00029 24.2 3.4 28 212-240 13-40 (41)
15 smart00185 ARM Armadillo/beta- 60.5 17 0.00036 22.7 3.6 28 212-240 13-40 (41)
16 PF05804 KAP: Kinesin-associat 56.9 18 0.00038 38.6 5.0 53 212-267 332-384 (708)
17 KOG2160|consensus 50.1 33 0.00072 33.7 5.4 52 215-268 127-179 (342)
18 KOG1048|consensus 47.6 26 0.00056 37.6 4.5 51 212-266 567-617 (717)
19 PF05804 KAP: Kinesin-associat 44.0 42 0.00091 35.9 5.4 52 215-268 293-344 (708)
20 PF10508 Proteasom_PSMB: Prote 38.7 55 0.0012 32.8 5.1 53 212-267 203-255 (503)
21 PF13646 HEAT_2: HEAT repeats; 36.2 42 0.0009 24.2 2.9 39 217-267 36-74 (88)
22 KOG4224|consensus 34.3 53 0.0011 33.6 4.1 49 215-265 336-386 (550)
23 PF10508 Proteasom_PSMB: Prote 32.7 66 0.0014 32.3 4.5 53 215-268 80-132 (503)
24 KOG1242|consensus 32.5 64 0.0014 33.9 4.5 48 215-267 298-345 (569)
25 PF10363 DUF2435: Protein of u 32.0 59 0.0013 25.8 3.3 53 212-268 4-56 (92)
26 PF08459 UvrC_HhH_N: UvrC Heli 30.2 12 0.00026 32.7 -1.0 13 123-135 143-155 (155)
27 PRK00558 uvrC excinuclease ABC 24.9 20 0.00043 37.2 -0.6 23 123-145 517-539 (598)
28 KOG0168|consensus 23.6 69 0.0015 35.6 3.0 55 212-267 168-223 (1051)
29 PRK14668 uvrC excinuclease ABC 21.3 23 0.0005 36.7 -1.0 21 123-143 501-521 (577)
30 PRK14670 uvrC excinuclease ABC 21.0 14 0.0003 38.4 -2.6 22 123-144 490-511 (574)
31 PRK14669 uvrC excinuclease ABC 20.8 21 0.00046 37.4 -1.3 22 123-144 526-547 (624)
32 PRK14667 uvrC excinuclease ABC 20.5 22 0.00047 36.9 -1.3 20 123-142 488-507 (567)
33 PF03672 UPF0154: Uncharacteri 20.0 63 0.0014 24.8 1.4 19 230-250 16-34 (64)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.2e-23 Score=201.54 Aligned_cols=103 Identities=40% Similarity=0.577 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCC-Cch--hHHHhhhhccHHHHHHHHhCCChHHHHHHHHHHHHhh
Q psy12599 164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADST-DED--DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLL 240 (269)
Q Consensus 164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~-d~~--~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~RKLL 240 (269)
.++++||+|++.+|||||+||||.|.||||+...++. ++. .+.......| |++.+.++|+|.+.|++|+.+||++|
T Consensus 21 ~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~L 99 (526)
T COG5064 21 SADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLL 99 (526)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999997432221 111 1222333478 99999999999999999999999999
Q ss_pred cCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 241 SSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 241 S~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
|+|.+||||.||++|+|||||+||...
T Consensus 100 S~E~~PPIq~VIdaGvVpRfvefm~~~ 126 (526)
T COG5064 100 SKETSPPIQPVIDAGVVPRFVEFMDEI 126 (526)
T ss_pred ccccCCCchhHHhccccHHHHHHHHhc
Confidence 999999999999999999999999643
No 2
>KOG0166|consensus
Probab=99.83 E-value=1.3e-20 Score=186.03 Aligned_cols=109 Identities=49% Similarity=0.639 Sum_probs=87.4
Q ss_pred ccchhhcHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCCc-hhHHHhhhhccHHHHHHHHhCCChHHHHHHHHHH
Q psy12599 158 KHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDE-DDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSA 236 (269)
Q Consensus 158 K~~yvn~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d~-~~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~ 236 (269)
|++. .+++++||||+|.+|||||+||+|+|+||||........+ ..........+ +.++++++|+|+..|+.|+++|
T Consensus 13 k~~~-~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~q~~a~~~~ 90 (514)
T KOG0166|consen 13 KNKG-VDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELLSDSQSQASNL-ELMLAALYSDDPQQQLTATQAF 90 (514)
T ss_pred hhcc-ccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHhhhh-HHHHHHHhCCCHHHHHHHHHHH
Confidence 3444 5789999999999999999999999999999321111111 00111111235 8899999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 237 RKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 237 RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
||+||.++||||++||.+|+||+||+||.+++
T Consensus 91 rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~ 122 (514)
T KOG0166|consen 91 RKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD 122 (514)
T ss_pred HHHHccCCCCCHHHHHHcCcHHHHHHHHccCC
Confidence 99999999999999999999999999998664
No 3
>PF15375 DUF4602: Domain of unknown function (DUF4602)
Probab=99.55 E-value=4e-15 Score=123.35 Aligned_cols=54 Identities=30% Similarity=0.507 Sum_probs=49.2
Q ss_pred hhhhhhhhhhhhhheeeeecccCCCchhhhHHHHHHHHHhcc--cccchhhcHHHH
Q psy12599 115 KKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIELGK--VKHRLIEVDKEM 168 (269)
Q Consensus 115 ~kk~qe~~l~kaR~Ev~rFGmsG~~k~k~r~~e~e~AI~lg~--~K~~yvn~~eel 168 (269)
....+++||+++|+|||+||||||++...+.+++++||+||| +|..|+||..-+
T Consensus 36 ~~~~~~~~l~k~~~eV~~fg~s~~~~~~r~~~e~~~~i~LGaKp~K~~~~pyk~l~ 91 (135)
T PF15375_consen 36 EKEEQEFDLKKARKEVEKFGISGLDKKDRRKAENERAISLGAKPPKNQYVPYKELK 91 (135)
T ss_pred chhhHHHhHHHHHHHHHHHccccCcHHHHHHHHHHHHHHcCCCCCCCCCcCHHHHH
Confidence 335599999999999999999999999999999999999999 999999996433
No 4
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.53 E-value=3.6e-15 Score=118.21 Aligned_cols=71 Identities=46% Similarity=0.634 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCCc---hhHHH-----hhhhccHHHHHHHHhCCChHHHHHHHHH
Q psy12599 164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDE---DDIEK-----MAQVNLDMLVVEAARKDNPELQLLAVQS 235 (269)
Q Consensus 164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d~---~~~~~-----~~~~~L~~eIV~~I~S~D~~~QLeAtq~ 235 (269)
+++++||+|+|++|||||+||||+|+||||+.......+ ..... .....+ +.|+.+|+|+|+..||+||++
T Consensus 19 d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~v~~v~S~d~~~ql~Atq~ 97 (97)
T PF01749_consen 19 DAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEEL-PEMVAGVNSDDPEVQLEATQQ 97 (97)
T ss_dssp SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHH-HHHHHHHTSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccccccccccccc-HHHHHhcCCCCHHHHHHhhCC
Confidence 479999999999999999999999999999854322211 11111 123567 899999999999999999985
No 5
>KOG0166|consensus
Probab=96.08 E-value=0.0095 Score=60.39 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=49.3
Q ss_pred hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
..| |-+...|.+.|++..-.|+|+++- ||...|.-|+.||++|+||++|++|.+..
T Consensus 237 ~iL-p~L~~ll~~~D~~Vl~Da~WAlsy-Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~ 292 (514)
T KOG0166|consen 237 PIL-PALLRLLHSTDEEVLTDACWALSY-LTDGSNEKIQMVIDAGVVPRLVDLLGHSS 292 (514)
T ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHH-HhcCChHHHHHHHHccchHHHHHHHcCCC
Confidence 356 888889999999999999999965 55678999999999999999999998653
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.37 E-value=0.099 Score=39.07 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++|+..+..|++.+..|.... .+....+++.|++|.|+++|...+
T Consensus 50 ~i-~~l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~l~~~l~~~~ 104 (120)
T cd00020 50 GL-PALVQLLKSEDEEVVKAALWALRNLAAGP-EDNKLIVLEAGGVPKLVNLLDSSN 104 (120)
T ss_pred Ch-HHHHHHHhCCCHHHHHHHHHHHHHHccCc-HHHHHHHHHCCChHHHHHHHhcCC
Confidence 45 77888889999999999999999998643 345566788999999999998643
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.09 E-value=0.079 Score=52.66 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=49.0
Q ss_pred hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
..| |-+..-|+|-|++....|+|++ -.||--.|--|+.||+.|+-+||||+|++.+
T Consensus 243 qal-piL~KLiys~D~evlvDA~WAi-SYlsDg~~E~i~avld~g~~~RLvElLs~~s 298 (526)
T COG5064 243 QAL-PILAKLIYSRDPEVLVDACWAI-SYLSDGPNEKIQAVLDVGIPGRLVELLSHES 298 (526)
T ss_pred HHH-HHHHHHHhhcCHHHHHHHHHHH-HHhccCcHHHHHHHHhcCCcHHHHHHhcCcc
Confidence 456 7778889999999999999999 4667778899999999999999999998753
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.91 E-value=0.16 Score=59.00 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHH-HhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSAR-KLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~R-KLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ +.++..+.++++..|.+|++.+- .+++.+. +++.||++|+||.||+||.++
T Consensus 190 aV-p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee--~~~aVIeaGaVP~LV~LL~sg 243 (2102)
T PLN03200 190 GV-DILVKLLSSGNSDAQANAASLLARLMMAFES--SISKVLDAGAVKQLLKLLGQG 243 (2102)
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHHcCChH--HHHHHHHCCCHHHHHHHHccC
Confidence 56 88999999999999999999764 4444332 899999999999999999753
No 9
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.67 E-value=0.091 Score=34.71 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.1
Q ss_pred CHHHHHhcCchHHHHhhcccCC
Q psy12599 247 PIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 247 PIDeVIesGVVPrfVeFLs~~D 268 (269)
.++.|+++|+||.||.+|.+.+
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~ 25 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPD 25 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSS
T ss_pred HHHHHHHcccHHHHHHHHcCCC
Confidence 4678999999999999998654
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.04 E-value=1.4 Score=32.78 Aligned_cols=53 Identities=26% Similarity=0.344 Sum_probs=42.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
+.+++.+.++++.....|+..+..+-+. ..+....+++.|++|.|+++|..++
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~ 62 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKSED 62 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCCC
Confidence 6778888999999999999999997754 2445556778899999999998643
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=82.67 E-value=1.7 Score=50.85 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +-++..|.+++...|..|++.++.|- ....--.+.|+++|.||.||++|.+.+
T Consensus 447 gI-p~LV~LL~s~s~~iQ~~A~~~L~nLa-~~ndenr~aIieaGaIP~LV~LL~s~~ 501 (2102)
T PLN03200 447 GV-QLLISLLGLSSEQQQEYAVALLAILT-DEVDESKWAITAAGGIPPLVQLLETGS 501 (2102)
T ss_pred cH-HHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 57 88999999999999999999998774 443345788999999999999997643
No 12
>KOG4224|consensus
Probab=78.37 E-value=3.5 Score=41.75 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=44.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhccc
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER 266 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~ 266 (269)
+.++.-+.++++..+++|+-++|.|-|.+ -.+-+|+++|-+|.+|++|+.
T Consensus 254 ~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~eiv~ag~lP~lv~Llqs 303 (550)
T KOG4224|consen 254 PALVDLMDDGSDKVKCQAGLALRNLASDT--EYQREIVEAGSLPLLVELLQS 303 (550)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhHHHhcCCchHHHHHHhC
Confidence 77888889999999999999999998864 456789999999999999964
No 13
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=75.50 E-value=2.8 Score=26.39 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=17.9
Q ss_pred CHHHHHhcCchHHHHhhcccCC
Q psy12599 247 PIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 247 PIDeVIesGVVPrfVeFLs~~D 268 (269)
....+++.|++|.|+++|..++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~ 25 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSED 25 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCC
Confidence 4567889999999999998543
No 14
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=61.82 E-value=13 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.0
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhh
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLL 240 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLL 240 (269)
.+ |.++..|.+.|+..+.+|+++++.|-
T Consensus 13 ~i-~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GI-PPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HH-HHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cH-HHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46 88899999999999999999998874
No 15
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=60.49 E-value=17 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.2
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhh
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLL 240 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLL 240 (269)
.+ +.++..+.++++..+..|++.+|.|.
T Consensus 13 ~i-~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GL-PALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35 77888888999999999999999875
No 16
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=56.94 E-value=18 Score=38.61 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=40.0
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ +.++..+.|++...+..|+..+-.|-..... -..++..|+||.||.||..+
T Consensus 332 iV-~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~--R~~mV~~GlIPkLv~LL~d~ 384 (708)
T PF05804_consen 332 IV-EKLLKLLPSENEDLVNVALRLLFNLSFDPEL--RSQMVSLGLIPKLVELLKDP 384 (708)
T ss_pred CH-HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH--HHHHHHCCCcHHHHHHhCCC
Confidence 46 7888888999988887777666665443322 35789999999999999854
No 17
>KOG2160|consensus
Probab=50.07 E-value=33 Score=33.75 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=43.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHH-HHhcCchHHHHhhcccCC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEA-LIHSGILPVLVECLERSD 268 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDe-VIesGVVPrfVeFLs~~D 268 (269)
..++..+++.++...-.|++-+-..++ .||++|+ ||+.|..+.|...|++++
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~q--NNP~~Qe~v~E~~~L~~Ll~~ls~~~ 179 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQ--NNPKSQEQVIELGALSKLLKILSSDD 179 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHcccHHHHHHHHccCC
Confidence 445557889999998888888877775 6999997 789999999999998664
No 18
>KOG1048|consensus
Probab=47.62 E-value=26 Score=37.59 Aligned_cols=51 Identities=29% Similarity=0.376 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhccc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER 266 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~ 266 (269)
-| +-|++.|.++|......++..+|.|- .++-+.++|..+++|-||.+|-.
T Consensus 567 gl-~~l~~ll~~~~~~vv~s~a~~LrNls---~d~rnk~ligk~a~~~lv~~Lp~ 617 (717)
T KOG1048|consen 567 GL-PPLVELLRNDDSDVVRSAAGALRNLS---RDIRNKELIGKYAIPDLVRCLPG 617 (717)
T ss_pred Cc-cHHHHHHhcCCchHHHHHHHHHhhhc---cCchhhhhhhcchHHHHHHhCcC
Confidence 56 88999999999999999999999976 47888999999999999999964
No 19
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=44.00 E-value=42 Score=35.87 Aligned_cols=52 Identities=31% Similarity=0.428 Sum_probs=41.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
+-++..|.+++.+..+.++..++||--..-| -+.+.++|+||.|+.||.+.+
T Consensus 293 ~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN--K~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 293 SLLVKCLDRENEELLILAVTFLKKLSIFKEN--KDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH--HHHHHHcCCHHHHHHHhcCCC
Confidence 5678888999999888888888776544334 578889999999999998654
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=38.70 E-value=55 Score=32.82 Aligned_cols=53 Identities=25% Similarity=0.258 Sum_probs=44.6
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
-+ +.++..+.++|.-.|+.|+.-+-.|-. .+.-.+-+.+.|+++.|+.+|...
T Consensus 203 ll-~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 203 LL-DLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HH-HHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 35 788889999999999999999998886 344467788999999999999753
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=36.23 E-value=42 Score=24.16 Aligned_cols=39 Identities=15% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 217 IV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
++..+.++|+..+..|++++.++= ...++|.|+++|..+
T Consensus 36 L~~~l~d~~~~vr~~a~~aL~~i~------------~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 36 LIELLKDEDPMVRRAAARALGRIG------------DPEAIPALIKLLQDD 74 (88)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHCCH------------HHHTHHHHHHHHTC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcCC
Confidence 445556677777777777766551 123677777776543
No 22
>KOG4224|consensus
Probab=34.34 E-value=53 Score=33.64 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=38.3
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHHHhhc-CCCCCCHHHHHhcCchHHHHhhcc
Q psy12599 215 MLVVEAARKDN-PELQLLAVQSARKLLS-SDKNPPIEALIHSGILPVLVECLE 265 (269)
Q Consensus 215 ~eIV~~I~S~D-~~~QLeAtq~~RKLLS-~EkNPPIDeVIesGVVPrfVeFLs 265 (269)
..+|.-+.-.| .+.|+.|+..+|.|-. .|+| ...++++|.||.|+++|-
T Consensus 336 ~pLVrlL~~~dnEeiqchAvstLrnLAasse~n--~~~i~esgAi~kl~eL~l 386 (550)
T KOG4224|consen 336 RPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN--VSVIRESGAIPKLIELLL 386 (550)
T ss_pred hHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh--hHHHhhcCchHHHHHHHh
Confidence 44666665544 5599999999999875 5665 468899999999999874
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=32.66 E-value=66 Score=32.28 Aligned_cols=53 Identities=17% Similarity=0.465 Sum_probs=43.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
+.+..+|.+.++..+.-|+..+++++. ....-++.+.+.|++|.++.||...|
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~-~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIAR-HSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhc-CCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 567789999999999999999999884 33445677888999999999997654
No 24
>KOG1242|consensus
Probab=32.49 E-value=64 Score=33.88 Aligned_cols=48 Identities=25% Similarity=0.412 Sum_probs=42.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
|.+.+.++..+++.+-.|...+.++-|...||-|+- +||.++++|...
T Consensus 298 P~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~-----~ip~Lld~l~dp 345 (569)
T KOG1242|consen 298 PVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK-----IIPTLLDALADP 345 (569)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH-----HHHHHHHHhcCc
Confidence 778888999999999999999999999999999887 678999988753
No 25
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=31.96 E-value=59 Score=25.76 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=39.4
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ .+++..|++..+-.+-.|...+|+|+.....+.++ -.+++..|.+.|..+|
T Consensus 4 ~~-~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~---~~~il~l~l~~L~d~D 56 (92)
T PF10363_consen 4 TL-QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVID---IPKILDLFLSQLKDED 56 (92)
T ss_pred HH-HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhh---HHHHHHHHHHHcCCCC
Confidence 35 67788889999999999999999999653313322 1467888888887665
No 26
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=30.20 E-value=12 Score=32.68 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=11.5
Q ss_pred hhhhhheeeeecc
Q psy12599 123 MKKARFEIMKFGM 135 (269)
Q Consensus 123 l~kaR~Ev~rFGm 135 (269)
|.++|-|+|||+|
T Consensus 143 Lq~irDEaHRFAI 155 (155)
T PF08459_consen 143 LQRIRDEAHRFAI 155 (155)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccC
Confidence 5689999999986
No 27
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=24.87 E-value=20 Score=37.20 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=18.8
Q ss_pred hhhhhheeeeecccCCCchhhhH
Q psy12599 123 MKKARFEIMKFGMNRMTGREKEK 145 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k~k~r~ 145 (269)
|-++|-|+|||+||..-+...+.
T Consensus 517 lq~irDEaHRFAi~~hR~~R~k~ 539 (598)
T PRK00558 517 LQRIRDEAHRFAITFHRKKRSKA 539 (598)
T ss_pred HHHHHHHhhhhhhhhhccccccc
Confidence 56899999999999887765544
No 28
>KOG0168|consensus
Probab=23.64 E-value=69 Score=35.59 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=39.6
Q ss_pred ccHHHHHHHHhCC-ChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~-D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ ..+++++.+. |+..|++|+..+=.+|+.-..--.+-+----+||.||.+|++.
T Consensus 168 k~-kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E 223 (1051)
T KOG0168|consen 168 KA-KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE 223 (1051)
T ss_pred HH-HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc
Confidence 45 7788899776 9999999999999999864322222111112799999999864
No 29
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=21.27 E-value=23 Score=36.72 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=17.4
Q ss_pred hhhhhheeeeecccCCCchhh
Q psy12599 123 MKKARFEIMKFGMNRMTGREK 143 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k~k~ 143 (269)
|-++|-|+|||+||.+-+-..
T Consensus 501 L~~irDEaHRFAi~~hR~~r~ 521 (577)
T PRK14668 501 LQRVRDEAHRFAVQYHQTLRD 521 (577)
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 668999999999998765554
No 30
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=20.97 E-value=14 Score=38.37 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=18.2
Q ss_pred hhhhhheeeeecccCCCchhhh
Q psy12599 123 MKKARFEIMKFGMNRMTGREKE 144 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k~k~r 144 (269)
|.++|-|+|||+||.+-+...+
T Consensus 490 Lq~iRDEaHRFAit~hRk~R~k 511 (574)
T PRK14670 490 LQNVRDEAHRKANGFNKKLREN 511 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 5689999999999988765554
No 31
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=20.85 E-value=21 Score=37.42 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=17.8
Q ss_pred hhhhhheeeeecccCCCchhhh
Q psy12599 123 MKKARFEIMKFGMNRMTGREKE 144 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k~k~r 144 (269)
|-++|-|+|||+||..-+....
T Consensus 526 Lq~iRDEaHRFAIt~hRk~R~k 547 (624)
T PRK14669 526 VQSIRDEAHRFAITFHRKRRET 547 (624)
T ss_pred HHHHHHHHHHHHHHHhHHHhhH
Confidence 5689999999999988665543
No 32
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=20.52 E-value=22 Score=36.90 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=16.0
Q ss_pred hhhhhheeeeecccCCCchh
Q psy12599 123 MKKARFEIMKFGMNRMTGRE 142 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k~k 142 (269)
|.++|-|+|||+||..-+-.
T Consensus 488 Lq~irDEaHRFAi~~hR~~r 507 (567)
T PRK14667 488 FGLIRDEAHRFALSYNRKLR 507 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66899999999998765433
No 33
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.02 E-value=63 Score=24.79 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHH
Q psy12599 230 LLAVQSARKLLSSDKNPPIEA 250 (269)
Q Consensus 230 LeAtq~~RKLLS~EkNPPIDe 250 (269)
|-|...++|-| ..||||++
T Consensus 16 f~ar~~~~k~l--~~NPpine 34 (64)
T PF03672_consen 16 FIARKYMEKQL--KENPPINE 34 (64)
T ss_pred HHHHHHHHHHH--HHCCCCCH
Confidence 44556666666 46999986
Done!