Query psy12599
Match_columns 269
No_of_seqs 168 out of 492
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 23:25:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 99.9 5.8E-23 2E-27 193.0 5.4 104 164-268 23-132 (529)
2 4b8j_A Importin subunit alpha- 99.7 4.5E-17 1.6E-21 150.2 4.6 105 163-268 22-130 (528)
3 3ul1_B Importin subunit alpha- 99.6 2.3E-15 7.8E-20 141.5 6.1 96 172-268 14-113 (510)
4 1wa5_B Importin alpha subunit; 99.5 7.3E-16 2.5E-20 143.0 -1.2 103 164-267 28-142 (530)
5 3nmz_A APC variant protein; pr 97.6 1.9E-05 6.6E-10 75.6 2.8 51 211-268 32-83 (458)
6 2jdq_A Importin alpha-1 subuni 97.6 9.5E-05 3.3E-09 65.3 6.5 55 212-267 21-76 (450)
7 4db8_A Armadillo-repeat protei 97.4 7.1E-05 2.4E-09 61.6 2.4 55 212-268 13-67 (252)
8 3tt9_A Plakophilin-2; cell adh 96.9 0.00033 1.1E-08 61.8 2.0 56 211-268 8-65 (233)
9 3l6x_A Catenin delta-1; cateni 95.9 0.0053 1.8E-07 60.9 4.5 56 211-268 48-103 (584)
10 1xm9_A Plakophilin 1; armadill 95.9 0.0074 2.5E-07 56.1 5.1 51 212-265 45-96 (457)
11 4db6_A Armadillo repeat protei 94.9 0.025 8.6E-07 45.1 4.4 53 215-268 15-67 (210)
12 1xqr_A HSPBP1 protein; armadil 94.7 0.033 1.1E-06 50.1 5.1 55 212-268 168-222 (296)
13 3l6x_A Catenin delta-1; cateni 94.3 0.023 8E-07 56.3 3.4 54 212-266 91-144 (584)
14 3tt9_A Plakophilin-2; cell adh 93.9 0.035 1.2E-06 48.8 3.4 52 212-266 53-105 (233)
15 4db6_A Armadillo repeat protei 93.5 0.083 2.8E-06 42.1 4.7 55 212-268 55-109 (210)
16 3nmw_A APC variant protein; AR 93.2 0.053 1.8E-06 49.8 3.5 53 212-265 128-180 (354)
17 1jdh_A Beta-catenin; beta-cate 92.8 0.11 3.9E-06 46.7 5.0 54 212-267 102-155 (529)
18 3tpo_A Importin subunit alpha- 92.7 0.1 3.4E-06 48.9 4.7 56 212-268 378-433 (529)
19 2z6h_A Catenin beta-1, beta-ca 92.6 0.12 4.2E-06 49.3 5.2 54 212-267 99-152 (644)
20 1xm9_A Plakophilin 1; armadill 92.6 0.12 4.1E-06 47.9 4.9 53 212-268 332-384 (457)
21 3ul1_B Importin subunit alpha- 92.2 0.13 4.4E-06 48.2 4.7 56 212-268 359-414 (510)
22 4db8_A Armadillo-repeat protei 91.3 0.23 7.8E-06 40.5 4.8 55 212-268 139-193 (252)
23 2jdq_A Importin alpha-1 subuni 91.2 0.21 7.1E-06 43.9 4.7 55 212-268 65-120 (450)
24 1jdh_A Beta-catenin; beta-cate 91.2 0.15 5E-06 46.0 3.7 54 212-268 60-114 (529)
25 3nmz_A APC variant protein; pr 91.0 0.17 5.8E-06 48.4 4.2 54 212-266 244-297 (458)
26 3nmw_A APC variant protein; AR 89.8 0.27 9.3E-06 45.1 4.3 55 212-268 264-318 (354)
27 4hxt_A De novo protein OR329; 89.7 0.34 1.2E-05 38.8 4.4 54 212-268 129-183 (252)
28 4hxt_A De novo protein OR329; 89.3 0.36 1.2E-05 38.7 4.2 54 212-268 171-225 (252)
29 2z6h_A Catenin beta-1, beta-ca 88.9 0.34 1.2E-05 46.3 4.4 54 212-268 57-111 (644)
30 4b8j_A Importin subunit alpha- 88.3 0.47 1.6E-05 43.5 4.8 55 212-268 245-299 (528)
31 2z6g_A B-catenin; FULL-length, 88.1 0.29 1E-05 48.7 3.5 54 212-268 193-247 (780)
32 1wa5_B Importin alpha subunit; 86.4 0.63 2.2E-05 42.9 4.5 56 212-268 384-441 (530)
33 3now_A UNC-45 protein, SD10334 85.3 0.62 2.1E-05 48.0 4.2 53 212-267 496-548 (810)
34 1xqr_A HSPBP1 protein; armadil 84.9 0.64 2.2E-05 41.6 3.6 55 212-268 125-180 (296)
35 3now_A UNC-45 protein, SD10334 79.6 1.3 4.4E-05 45.7 4.0 54 212-267 709-762 (810)
36 2z6g_A B-catenin; FULL-length, 72.2 4.2 0.00014 40.4 5.3 54 212-267 235-288 (780)
37 2nrr_A Uvrabc system protein C 45.9 2.9 9.9E-05 35.6 -1.1 19 123-141 137-155 (159)
38 3c65_A Uvrabc system protein C 35.4 5.8 0.0002 35.2 -0.9 19 123-141 147-165 (226)
39 4gmo_A Putative uncharacterize 34.6 36 0.0012 33.3 4.5 52 212-266 35-87 (684)
40 3opb_A SWI5-dependent HO expre 33.9 42 0.0015 34.7 5.1 53 212-267 458-510 (778)
41 3ltm_A Alpha-REP4; protein eng 32.6 59 0.002 25.5 4.8 25 215-239 22-46 (211)
42 2qk1_A Protein STU2; STU2P, XM 30.7 85 0.0029 26.6 5.8 53 215-267 149-203 (249)
43 2nrt_A Uvrabc system protein C 30.2 6.5 0.00022 34.9 -1.4 18 123-140 142-159 (220)
44 3ltm_A Alpha-REP4; protein eng 23.6 1.1E+02 0.0036 24.0 4.8 13 255-267 112-124 (211)
45 2vgl_B AP-2 complex subunit be 23.5 66 0.0022 30.5 4.1 50 215-268 124-173 (591)
46 3ltj_A Alpharep-4; protein eng 23.3 1.1E+02 0.0039 23.7 4.8 42 212-266 108-149 (201)
47 1oyz_A Hypothetical protein YI 22.7 68 0.0023 26.4 3.6 25 215-239 26-50 (280)
48 3ltj_A Alpharep-4; protein eng 22.7 1.2E+02 0.004 23.6 4.8 44 212-268 77-120 (201)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.87 E-value=5.8e-23 Score=193.03 Aligned_cols=104 Identities=41% Similarity=0.601 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCCch------hHHHhhhhccHHHHHHHHhCCChHHHHHHHHHHH
Q psy12599 164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDED------DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSAR 237 (269)
Q Consensus 164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d~~------~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~R 237 (269)
+.+++||||+|.+|||||+||||+|+||||+......... .........+ ++|+++++|+|++.|++|++.||
T Consensus 23 ~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~lv~~l~s~d~~~q~~a~~~~r 101 (529)
T 3tpo_A 23 DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSV-EDIVKGINSNNLESQLQATQAAR 101 (529)
T ss_dssp ---------------------CCSCSCCCCCC---------------CGGGSSCCH-HHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999998532211110 0111123568 99999999999999999999999
Q ss_pred HhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 238 KLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 238 KLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
||||.++||||+.||++|+||+||+||.+++
T Consensus 102 klLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~ 132 (529)
T 3tpo_A 102 KLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 132 (529)
T ss_dssp HHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT
T ss_pred HHHcCCCCchHHHHHHCCCHHHHHHHHcCCC
Confidence 9999999999999999999999999998654
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.65 E-value=4.5e-17 Score=150.22 Aligned_cols=105 Identities=37% Similarity=0.519 Sum_probs=62.0
Q ss_pred hcHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCC-chh---HHHhhhhccHHHHHHHHhCCChHHHHHHHHHHHH
Q psy12599 163 EVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTD-EDD---IEKMAQVNLDMLVVEAARKDNPELQLLAVQSARK 238 (269)
Q Consensus 163 n~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d-~~~---~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~RK 238 (269)
.+.+++||||++.+|||||+||||+|+||||+....+.. +.. ........+ +.++..+.|+|+..++.|++.+++
T Consensus 22 ~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l-~~lv~~L~s~~~~~~~~A~~~L~~ 100 (528)
T 4b8j_A 22 VDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESL-PAMIGGVYSDDNNLQLEATTQFRK 100 (528)
T ss_dssp -----CCCCC-----------------CCCC----------------------CH-HHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHH-HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999974321110 000 011123568 999999999999999999999999
Q ss_pred hhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 239 LLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 239 LLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
++|.+.+||++.++.+|+||.||+||...+
T Consensus 101 l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 130 (528)
T 4b8j_A 101 LLSIERSPPIEEVIQSGVVPRFVQFLTRED 130 (528)
T ss_dssp HHTCSSSCCHHHHHHTTCHHHHHHHHTCTT
T ss_pred HhcCCCCchHHHHHHCCCHHHHHHHhCCCC
Confidence 999999999999999999999999998654
No 3
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.56 E-value=2.3e-15 Score=141.49 Aligned_cols=96 Identities=28% Similarity=0.376 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhHHHHhhhcCCCCCCCCCch----hHHHhhhhccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCC
Q psy12599 172 RNEVTVELRKNKREETLQKRRNVPLADSTDED----DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP 247 (269)
Q Consensus 172 REE~~VELRKqKRDEqL~KRRNi~~~~~~d~~----~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPP 247 (269)
|..-.+++|+++.+.+.+++++....+.+... ..++...+++ ++||++|+|+|++.|++||++||||||.|+|||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp 92 (510)
T 3ul1_B 14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSV-EDIVKGINSNNLESQLQATQAARKLLSREKQPP 92 (510)
T ss_dssp ---------------------------------------CCSSCCH-HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred CCcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhH-HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence 44557899999999999988886433222111 1122234678 999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHhhcccCC
Q psy12599 248 IEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 248 IDeVIesGVVPrfVeFLs~~D 268 (269)
|+.||++|+||+||+||++++
T Consensus 93 i~~ii~~G~ip~LV~lL~~~~ 113 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGKTD 113 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHCCCC
Confidence 999999999999999998654
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.51 E-value=7.3e-16 Score=142.95 Aligned_cols=103 Identities=39% Similarity=0.607 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCC----CCCCchh----HHH----hhhhccHHHHHHHHhCCChHHHHH
Q psy12599 164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLA----DSTDEDD----IEK----MAQVNLDMLVVEAARKDNPELQLL 231 (269)
Q Consensus 164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~----~~~d~~~----~~~----~~~~~L~~eIV~~I~S~D~~~QLe 231 (269)
+++++||||++.+|+|||+|||++|+||||+... +..++.. ... .....+ +.++..|.|+|+..++.
T Consensus 28 ~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~lv~~L~s~~~~~~~~ 106 (530)
T 1wa5_B 28 SADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL-PQMTQQLNSDDMQEQLS 106 (530)
T ss_dssp ---CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCH-HHHHHHHSCSSHHHHHH
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHH-HHHHHHHcCCCHHHHHH
Confidence 4589999999999999999999999999998531 1111110 001 122467 99999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 232 AVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 232 Atq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
|++.+|+++|.+.+||++.++++|+||.||++|...
T Consensus 107 A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~ 142 (530)
T 1wa5_B 107 ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN 142 (530)
T ss_dssp HHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT
T ss_pred HHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC
Confidence 999999999998899999999999999999999864
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.63 E-value=1.9e-05 Score=75.60 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=35.0
Q ss_pred hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCH-HHHHhcCchHHHHhhcccCC
Q psy12599 211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERSD 268 (269)
Q Consensus 211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPI-DeVIesGVVPrfVeFLs~~D 268 (269)
..+ +.++.++.|+|++ ..+|+|||.+.|||| ..+|++|+||+||+||..++
T Consensus 32 ~~~-~~l~~~~~~~~~~------~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~ 83 (458)
T 3nmz_A 32 EMV-YSLLSMLGTHDKD------DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGND 83 (458)
T ss_dssp --------------CCH------HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTT
T ss_pred HHH-HHHHHHhcCCCHH------HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhccc
Confidence 456 8889999999999 399999999999999 89999999999999999653
No 6
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.59 E-value=9.5e-05 Score=65.25 Aligned_cols=55 Identities=40% Similarity=0.569 Sum_probs=51.3
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhc-CchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIes-GVVPrfVeFLs~~ 267 (269)
.+ +.+++.+.|+|+..+..|+..+|++++.+.+||++.+|.. |+||.|+++|..+
T Consensus 21 ~l-~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~ 76 (450)
T 2jdq_A 21 IT-SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK 76 (450)
T ss_dssp -C-HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT
T ss_pred cH-HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC
Confidence 37 8899999999999999999999999998889999999999 9999999999865
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.35 E-value=7.1e-05 Score=61.60 Aligned_cols=55 Identities=31% Similarity=0.442 Sum_probs=50.3
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..|.|+|++.|..|++.+++++|. .+++++.+++.|+||.|+++|...+
T Consensus 13 ~~-~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~ 67 (252)
T 4db8_A 13 EL-PQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN 67 (252)
T ss_dssp SH-HHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred hH-HHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC
Confidence 45 8899999999999999999999999998 6788899999999999999998654
No 8
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.87 E-value=0.00033 Score=61.78 Aligned_cols=56 Identities=13% Similarity=0.011 Sum_probs=46.4
Q ss_pred hccHHHHHHHHhCCCh--HHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 211 VNLDMLVVEAARKDNP--ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 211 ~~L~~eIV~~I~S~D~--~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
+.+ +.+|+.|.|+|+ +.|..|+..++. |+...+++...|+++|.||.||++|++.+
T Consensus 8 ~~i-~~lV~lL~s~~~~~~~q~~Aa~~l~~-L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~ 65 (233)
T 3tt9_A 8 MTL-ERAVSMLEADHMLPSRISAAATFIQH-ECFQKSEARKRVNQLRGILKLLQLLKVQN 65 (233)
T ss_dssp CCH-HHHHHTCCSSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHGGGCCC
T ss_pred ccH-HHHHHHhCCCCchHHHHHHHHHHHHH-HHcCCcHHHHHHHHcCCHHHHHHHHcCCC
Confidence 577 999999999999 888999988766 44455666778999999999999998653
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.95 E-value=0.0053 Score=60.90 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=48.4
Q ss_pred hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
..+ +.+|..|.|+|+..|++|+..++.|.+ ...+....|+++|.||.||++|.+.+
T Consensus 48 ~~i-~~LV~~L~s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~ 103 (584)
T 3l6x_A 48 PEL-PEVIAMLGFRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPK 103 (584)
T ss_dssp CCH-HHHHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred ccH-HHHHHHHCCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCC
Confidence 367 999999999999999999999887764 45677888999999999999998754
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.91 E-value=0.0074 Score=56.06 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHH-HHhcCchHHHHhhcc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEA-LIHSGILPVLVECLE 265 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDe-VIesGVVPrfVeFLs 265 (269)
.+ |.++..+.|+++..|..|++.+|.|.+. ||+... |+++|.||.||++|.
T Consensus 45 ~i-~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~~i~~~G~i~~Lv~lL~ 96 (457)
T 1xm9_A 45 GI-CKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKLETRRQNGIREAVSLLR 96 (457)
T ss_dssp HH-HHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHHHT
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHh
Confidence 56 8899999999999999999999999873 667666 459999999999998
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.91 E-value=0.025 Score=45.12 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=44.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
+-++..+.|+|+..+..|++.++.|.. ......+.+++.|+||.|+++|...+
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~ 67 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSPN 67 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 567777899999999999999999864 33556678999999999999998653
No 12
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.69 E-value=0.033 Score=50.05 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
-+ +-++..+.++|+..+..|++.+..|.+. .+--++.+++.|+||.||.+|...+
T Consensus 168 gi-~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d 222 (296)
T 1xqr_A 168 GF-SVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEH 222 (296)
T ss_dssp HH-HHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCC
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCC
Confidence 46 7788889999999999999999999876 3446888999999999999998754
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.28 E-value=0.023 Score=56.31 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=47.2
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhccc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER 266 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~ 266 (269)
.+ |.+|..|.|+++..|..|+++++.|.+......-..|+++|+||.||.+|.+
T Consensus 91 ~I-p~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s 144 (584)
T 3l6x_A 91 GI-PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK 144 (584)
T ss_dssp HH-HHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred Cc-HHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 56 8899999999999999999999999875434566788999999999999985
No 14
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.89 E-value=0.035 Score=48.79 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCC-CHHHHHhcCchHHHHhhccc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNP-PIEALIHSGILPVLVECLER 266 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNP-PIDeVIesGVVPrfVeFLs~ 266 (269)
.+ |.++..|.|+++..|..|++++|.|-+. ++ --..|+++|.||.||++|.+
T Consensus 53 ~I-p~LV~lL~s~~~~vq~~Aa~aL~nLa~~--~~~nk~~I~~~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 53 GI-LKLLQLLKVQNEDVQRAVCGALRNLVFE--DNDNKLEVAELNGVPRLLQVLKQ 105 (233)
T ss_dssp HH-HHHHHGGGCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHcCCHHHHHHHHcc
Confidence 46 8899999999999999999999998753 33 24568899999999999973
No 15
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.53 E-value=0.083 Score=42.06 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++++..+..|++.+..|.... ..-.+.+++.|+||.|+.+|...+
T Consensus 55 ~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~ 109 (210)
T 4db6_A 55 AL-PALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPN 109 (210)
T ss_dssp HH-HHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHcCCc
Confidence 45 78888999999999999999999987432 233467889999999999998654
No 16
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.22 E-value=0.053 Score=49.81 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=43.4
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLE 265 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs 265 (269)
.+ |.++..|.|++++.|..|++.++.|-......-.+.|+++|+||.||++|.
T Consensus 128 aI-p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~ 180 (354)
T 3nmw_A 128 CM-RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 180 (354)
T ss_dssp HH-HHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cH-HHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh
Confidence 37 889999999999999999999999865322234577889999999999864
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.79 E-value=0.11 Score=46.70 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ +.++..+.++++..+..|++.++.|.+... .....+++.|+||.|+++|...
T Consensus 102 ~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 102 GI-PALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HH-HHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCC
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcC
Confidence 46 888999999999999999999999987542 3466778999999999999864
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=92.71 E-value=0.1 Score=48.95 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=47.1
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.+++...+.+|++++..+.+....--+..+++.|+||.|+.+|...|
T Consensus 378 ~i-~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 378 LV-PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HH-HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred cH-HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence 35 778888999999999999999999987544444667899999999999998765
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=92.61 E-value=0.12 Score=49.32 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ +.++..+.++++..+..|++.++.|.+.. .+....+++.|+||.||++|...
T Consensus 99 ~i-~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 99 GI-PALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HH-HHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC
T ss_pred CH-HHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcC
Confidence 46 88899999999999999999999999864 55667788999999999999864
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=92.57 E-value=0.12 Score=47.94 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=47.1
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ |-++..+.+++...+.+|++.++.|-. ++.+..+|..|+||.||++|...+
T Consensus 332 ~l-~~Lv~LL~~~~~~v~~~A~~aL~nls~---~~~~~~~i~~~~i~~Lv~lL~~~~ 384 (457)
T 1xm9_A 332 GL-PQIARLLQSGNSDVVRSGASLLSNMSR---HPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp CH-HHHHHHTTCSCHHHHHHHHHHHHHHHT---SGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred Cc-hHHHHHHhCCCHhHHHHHHHHHHHHhc---CHHHHHHHHHhhhHHHHHhccCCC
Confidence 46 888999999999999999999999864 678999999999999999998653
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.19 E-value=0.13 Score=48.16 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=47.8
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.+.+...+.+|++.+..+.+.....-+..+++.|+||.|+.+|...|
T Consensus 359 ~i-~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d 414 (510)
T 3ul1_B 359 LV-PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414 (510)
T ss_dssp HH-HHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 35 778888999999999999999999998654445677899999999999998765
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.33 E-value=0.23 Score=40.50 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++++..+..|++.+..|.+.. ..-.+.+++.|+||.|+++|...+
T Consensus 139 ~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~ 193 (252)
T 4db8_A 139 AL-PALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPN 193 (252)
T ss_dssp HH-HHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGGGCSS
T ss_pred CH-HHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHCCCC
Confidence 46 78888899999999999999999988542 233456788999999999998653
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=91.21 E-value=0.21 Score=43.86 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCC-ChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~-D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++ ++..+..|++.++.+.+.. ......+++.|+||.|+++|...+
T Consensus 65 ~i-~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~ 120 (450)
T 2jdq_A 65 VV-ARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF 120 (450)
T ss_dssp HH-HHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred cH-HHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC
Confidence 45 8888899888 8999999999999998742 223456788999999999998653
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=91.18 E-value=0.15 Score=46.00 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhC-CChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S-~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.+ +|+..+..|+..+++| |.... +...+++.|+||.|+++|..++
T Consensus 60 ~i-~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~~-~~~~i~~~g~i~~L~~lL~~~~ 114 (529)
T 1jdh_A 60 MV-SAIVRTMQNTNDVETARCTAGTLHNL-SHHRE-GLLAIFKSGGIPALVKMLGSPV 114 (529)
T ss_dssp HH-HHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHH-HHHHHHHTTHHHHHHHHTTCSC
T ss_pred hH-HHHHHHHhcCCCHHHHHHHHHHHHHH-HcCch-hHHHHHHcCCHHHHHHHHcCCC
Confidence 35 777877864 5899999999999996 44433 7788999999999999998654
No 25
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=90.95 E-value=0.17 Score=48.39 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=43.4
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhccc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER 266 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~ 266 (269)
.+ |.++..|.|++++.+..|++.++.|-....+.-.+.|+++|+||.||++|.+
T Consensus 244 aI-p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~ 297 (458)
T 3nmz_A 244 CM-RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 297 (458)
T ss_dssp HH-HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred cH-HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc
Confidence 37 8889999999999999999999997543222345778899999999998643
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=89.75 E-value=0.27 Score=45.06 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..|.+.+...+.+|+..++.|-.. ...-++.++++|+||.||++|...+
T Consensus 264 ~i-~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~ 318 (354)
T 3nmw_A 264 CL-QTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKH 318 (354)
T ss_dssp HH-HHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred CH-HHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 46 8888889999999999999999998743 2234677899999999999997643
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=89.73 E-value=0.34 Score=38.85 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCC-HHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP-IEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPP-IDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++++..+..|+..+..|... ++. .+.+++.|++|.|+.+|...+
T Consensus 129 ~i-~~L~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~ 183 (252)
T 4hxt_A 129 GV-EVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTSTD 183 (252)
T ss_dssp HH-HHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCcCHHHHHHHHCCCC
Confidence 46 7888889999999999999999998753 333 367889999999999998653
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=89.32 E-value=0.36 Score=38.66 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=44.6
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCC-HHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP-IEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPP-IDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.+.++..+..|+..+..|... +|. ++.+++.|++|.|+++|...+
T Consensus 171 ~i-~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~ 225 (252)
T 4hxt_A 171 GV-EVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTSTD 225 (252)
T ss_dssp HH-HHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred CH-HHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCCCc
Confidence 45 7788889999999999999999999863 333 456789999999999998654
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=88.86 E-value=0.34 Score=46.28 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCC-ChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~-D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++ ++..+..|+..++. ||.... +...+++.|+||.||++|...+
T Consensus 57 ~i-~~Lv~~L~~~~~~~~~~~A~~~L~~-Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~ 111 (644)
T 2z6h_A 57 MV-SAIVRTMQNTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPV 111 (644)
T ss_dssp HH-HHHHHHHHSCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHTTTHHHHHHHHTTCSS
T ss_pred hH-HHHHHHHhcCCCHHHHHHHHHHHHH-HhcChh-hHHHHHHcCCHHHHHHHHhCCC
Confidence 35 7788888764 89999999999995 555534 7888999999999999998654
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=88.27 E-value=0.47 Score=43.49 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++|+..+..|++.+..|... .+.-++.+++.|+||.||.+|...+
T Consensus 245 ~l-~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 245 AL-PALARLIHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HH-HHHHHHTTCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HH-HHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 45 7788888999999999999999998743 3445678899999999999998653
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=88.12 E-value=0.29 Score=48.73 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhC-CChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S-~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.+ .|+..+..|+..++. ||....+ ...+++.|+||.||++|...+
T Consensus 193 ~i-~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~ 247 (780)
T 2z6g_A 193 MV-SAIVRTMQNTNDVETARCTSGTLHN-LSHHREG-LLAIFKSGGIPALVNMLGSPV 247 (780)
T ss_dssp HH-HHHHHHHHHCCCHHHHHHHHHHHHH-HHTSHHH-HHHHHHTTHHHHHHHHTTCSC
T ss_pred hH-HHHHHHHcCCCCHHHHHHHHHHHHH-HhCCchh-HHHHHHcCCHHHHHHHHcCCC
Confidence 35 777878864 499999999999999 5555333 888999999999999998653
No 32
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=86.39 E-value=0.63 Score=42.90 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=45.7
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCC--CCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN--PPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkN--PPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.+.++..+..|++.+..|.+.... .-+..+++.|+||.|+.+|...+
T Consensus 384 ~l-~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 441 (530)
T 1wa5_B 384 LI-PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 441 (530)
T ss_dssp CH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred CH-HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence 45 7788888889999999999999999875322 34677889999999999997643
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=85.32 E-value=0.62 Score=48.03 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ |-++..+.|+++..|.+|++.+..|-+. ..-.+.|+++|+||.||.+|...
T Consensus 496 aV-p~LV~LL~s~s~~vqe~Aa~aL~NLA~d--~~~r~~Vv~~Gaip~Lv~LL~s~ 548 (810)
T 3now_A 496 IT-TALCALAKTESHNSQELIARVLNAVCGL--KELRGKVVQEGGVKALLRMALEG 548 (810)
T ss_dssp HH-HHHHHHHTCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHccC
Confidence 46 8889999999999999999999999642 34688899999999999999754
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=84.88 E-value=0.64 Score=41.62 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhCC-ChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~-D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.++ ++..+-.|++++..|.. ...|.++.++++|+||.|+.+|...+
T Consensus 125 ~l-~~Ll~LL~~~~~~~v~~~A~~ALsnl~~-~~~~~~~~~~~~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 125 AL-RKLLRLLDRDACDTVRVKALFAISCLVR-EQEAGLLQFLRLDGFSVLMRAMQQQV 180 (296)
T ss_dssp HH-HHHHHHHHHCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred CH-HHHHHHHccCCCHHHHHHHHHHHHHHHc-CCcHHHHHHHHCCCHHHHHHHHcCCC
Confidence 56 7788888754 78889999999998774 22344678999999999999998654
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=79.61 E-value=1.3 Score=45.69 Aligned_cols=54 Identities=11% Similarity=0.133 Sum_probs=45.7
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
-+ +.++..+.++|...|..|++.+..|++.. .-.+..++++|++|.|+.+|+.+
T Consensus 709 ~I-~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s-~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 709 WL-DILHTLIANPSPAVQHRGIVIILNMINAG-EEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HH-HHHHHHHTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHTSTHHHHHTTSCCCT
T ss_pred CH-HHHHHHHCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHhCc
Confidence 45 77888889999999999999999999743 23477899999999999999754
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=72.15 E-value=4.2 Score=40.44 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ +.++..+.+.++..+..|+..+..|.+.. ..-...+++.|+||.||++|...
T Consensus 235 ~I-~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 235 GI-PALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HH-HHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcC
Confidence 46 78888899999999999999999998752 12234456899999999999764
No 37
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=45.95 E-value=2.9 Score=35.63 Aligned_cols=19 Identities=21% Similarity=0.294 Sum_probs=13.8
Q ss_pred hhhhhheeeeecccCCCch
Q psy12599 123 MKKARFEIMKFGMNRMTGR 141 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k~ 141 (269)
|.++|-|+|||+||+.-+.
T Consensus 137 lqriRDEaHRFAIt~HR~~ 155 (159)
T 2nrr_A 137 LVQIRDETHRFAVSYHRKR 155 (159)
T ss_dssp HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5689999999999987654
No 38
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=35.40 E-value=5.8 Score=35.24 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=13.0
Q ss_pred hhhhhheeeeecccCCCch
Q psy12599 123 MKKARFEIMKFGMNRMTGR 141 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k~ 141 (269)
|.++|-|+|||+||+-.+.
T Consensus 147 lq~irDEaHRFAIt~hr~~ 165 (226)
T 3c65_A 147 LQRIQDEVHRFAVMFHRKT 165 (226)
T ss_dssp HHHHHHHHHHHTTC-----
T ss_pred hhhccchhhhhhhhccccc
Confidence 6689999999999987643
No 39
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=34.57 E-value=36 Score=33.32 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=38.9
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHH-HHhhccc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPV-LVECLER 266 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPr-fVeFLs~ 266 (269)
.+ ..+++.|.|.|+..+..|++++..|.+ .......++..|+|+. +..+|..
T Consensus 35 ~i-~Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D 87 (684)
T 4gmo_A 35 KI-LPVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTD 87 (684)
T ss_dssp TT-HHHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTC
T ss_pred hH-HHHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCC
Confidence 45 568889999999999999999999984 2334455667787765 5566754
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=33.87 E-value=42 Score=34.70 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS 267 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~ 267 (269)
.+ +-++..+.|+++..+-.|++.+-.| |.. ..-...+++.|++|.|+.+|...
T Consensus 458 vI-p~Lv~Ll~S~s~~~re~A~~aL~nL-S~d-~~~R~~lvqqGal~~LL~lL~s~ 510 (778)
T 3opb_A 458 LI-SFLKREMHNLSPNCKQQVVRIIYNI-TRS-KNFIPQLAQQGAVKIILEYLANK 510 (778)
T ss_dssp HH-HHHHHHGGGSCHHHHHHHHHHHHHH-HTS-GGGHHHHHHTTHHHHHHHHTTCC
T ss_pred CH-HHHHHHHcCCCHHHHHHHHHHHHHH-cCC-HHHHHHHHHCCCHHHHHHHHhcC
Confidence 45 7788888999999999999999888 432 44577899999999999999764
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.63 E-value=59 Score=25.52 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=15.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHh
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKL 239 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKL 239 (269)
+.++..+.+.|+.....|+..+.++
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~ 46 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKI 46 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 5566666666666666666655543
No 42
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=30.72 E-value=85 Score=26.65 Aligned_cols=53 Identities=9% Similarity=0.305 Sum_probs=41.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHH--HHHhcCchHHHHhhcccC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIE--ALIHSGILPVLVECLERS 267 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPID--eVIesGVVPrfVeFLs~~ 267 (269)
+.++..+.+.++..+.+++..+-.++...+.+|-+ .-+...++|.++++|...
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 77888889899999999999999999766555543 223246899999999644
No 43
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=30.18 E-value=6.5 Score=34.86 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.4
Q ss_pred hhhhhheeeeecccCCCc
Q psy12599 123 MKKARFEIMKFGMNRMTG 140 (269)
Q Consensus 123 l~kaR~Ev~rFGmsG~~k 140 (269)
|.++|-|+|||+||+-.+
T Consensus 142 lq~iRDEaHRFAIt~hr~ 159 (220)
T 2nrt_A 142 LVQIRDETHRFAVSYHRK 159 (220)
T ss_dssp HHHHHHHHHHHHHGGGHH
T ss_pred hhhhcchhhhcccccccc
Confidence 568999999999998653
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.63 E-value=1.1e+02 Score=24.02 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=8.1
Q ss_pred CchHHHHhhcccC
Q psy12599 255 GILPVLVECLERS 267 (269)
Q Consensus 255 GVVPrfVeFLs~~ 267 (269)
+.+|.|+++|...
T Consensus 112 ~~~~~L~~~l~d~ 124 (211)
T 3ltm_A 112 RAVEPLIKALKDE 124 (211)
T ss_dssp GGHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCC
Confidence 3667777777543
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=23.49 E-value=66 Score=30.50 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
+.+...+.+.++.....|+.++.++... +|- .+.+.|++|.|.++|...|
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~--~p~--~~~~~~~~~~l~~lL~d~d 173 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDI--NAQ--MVEDQGFLDSLRDLIADSN 173 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHS--SCC--CHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhh--Chh--hcccccHHHHHHHHhCCCC
Confidence 5677888999999999999999999974 332 3344689999999997543
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=23.29 E-value=1.1e+02 Score=23.65 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=28.1
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhccc
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER 266 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~ 266 (269)
.+ +.++..+.+.++..+..|+..+.++-. .+.+|.|+++|..
T Consensus 108 ~~-~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d 149 (201)
T 3ltj_A 108 AV-EPLIKALKDEDWFVRIAAAFALGEIGD------------ERAVEPLIKALKD 149 (201)
T ss_dssp GH-HHHHHHTTCSSHHHHHHHHHHHHHHTC------------GGGHHHHHHHTTC
T ss_pred HH-HHHHHHHcCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHcC
Confidence 45 667777778888888888887776531 2456666666653
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.75 E-value=68 Score=26.39 Aligned_cols=25 Identities=4% Similarity=-0.078 Sum_probs=14.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHh
Q psy12599 215 MLVVEAARKDNPELQLLAVQSARKL 239 (269)
Q Consensus 215 ~eIV~~I~S~D~~~QLeAtq~~RKL 239 (269)
+.++..+.++|+..+..|+..+.++
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~ 50 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLR 50 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHcc
Confidence 5566666666666666665555543
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.72 E-value=1.2e+02 Score=23.57 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=33.4
Q ss_pred ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599 212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268 (269)
Q Consensus 212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D 268 (269)
.+ +.++..+.+.++..+..|+..+.++-. .+++|.|+.+|...+
T Consensus 77 ~~-~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~ 120 (201)
T 3ltj_A 77 AV-EPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDED 120 (201)
T ss_dssp GH-HHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS
T ss_pred HH-HHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCCC
Confidence 45 778888899999999999998877632 247888888886543
Done!