RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12599
(269 letters)
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 102 bits (256), Expect = 5e-25
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV--------- 217
E+RRRR+ VELRK KR+E L KRRN + D E + V+ D
Sbjct: 31 ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELP 90
Query: 218 --VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+ D+ + QL A R++LS + PPI+ +I +G++P LVE + +
Sbjct: 91 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143
Score = 27.3 bits (60), Expect = 7.0
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 216 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+ + + E + A + L I+A+I I LVE L
Sbjct: 261 TLAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLSHES 312
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 95.5 bits (237), Expect = 2e-22
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV---VEAARK 223
R E K E ++ D Q ++ V V+
Sbjct: 9 SGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINS 68
Query: 224 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113
Score = 32.3 bits (73), Expect = 0.16
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 216 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V ++PE+ + + L + N IE ++ G++P LV+ L ++
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLLGATE 287
Score = 27.3 bits (60), Expect = 5.8
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 196 LADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSG 255
L D +E IE + + + +V+ + A+++ +++ + + +I +G
Sbjct: 259 LTDGPNER-IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAG 316
Query: 256 ILPVLVECLERSD 268
L V L
Sbjct: 317 ALAVFPSLLTNPK 329
Score = 26.9 bits (59), Expect = 9.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 240 LSSDKNPPIEALIHSGILPVLVECLERSD 268
L +KNP ILP LV L +D
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHND 245
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 57.6 bits (139), Expect = 1e-09
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 196 LADSTDEDDIEKMAQVNLDM-LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI-H 253
+ + + +MA + ++E +PE QL A Q RKLLS + NPPI+ +I
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 254 SGILPVLVECLERSD 268
G++ VE L+R +
Sbjct: 63 PGVVARFVEFLKRKE 77
Score = 30.6 bits (69), Expect = 0.46
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 216 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
++ + ++ A + L S N I+A+I +G+ LVE L +D
Sbjct: 196 VLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGVCRRLVELLMHND 247
Score = 30.6 bits (69), Expect = 0.55
Identities = 15/51 (29%), Positives = 18/51 (35%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
++ K N A L K+PP E S L VL L SD
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD 205
Score = 29.5 bits (66), Expect = 1.3
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 196 LADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSG 255
L+D ++ I+ + + +VE ++ ++ A+++ +++ D + +++
Sbjct: 219 LSDGPNDK-IQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ-TQVILNCS 276
Query: 256 ILPVLVECLERSD 268
L L+ L
Sbjct: 277 ALQSLLHLLSSPK 289
>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.50A {Homo sapiens}
Length = 44
Score = 46.3 bits (110), Expect = 1e-07
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNV 194
EMRRRR EV VELRK K+++ + KRRNV
Sbjct: 16 EMRRRRIEVNVELRKAKKDDQMLKRRNV 43
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 48.8 bits (117), Expect = 4e-07
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+ D+ + QL A + ++LS D N I+A+I +G LP LV+ L +
Sbjct: 18 TQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN 67
Score = 33.8 bits (78), Expect = 0.041
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 216 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ N ++ A+ A ++S N I+A+I +G LP LV+ L +
Sbjct: 142 ALVQLLSSPNEQILQEAL-WALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Score = 27.6 bits (62), Expect = 3.8
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 203 DDIEKMAQVNLDML--VVEAARKDNPELQLLAVQSARKL--LSSDKNPPIEALIHSGILP 258
+ + A ++ L +V+ N ++ ++ L ++S N I+A+I +G LP
Sbjct: 85 GNEQIQAVIDAGALPALVQLLSSPNEQIL---QEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 259 VLVECLERSD 268
LV+ L +
Sbjct: 142 ALVQLLSSPN 151
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
V+ + + A++ ++S N I+A+I +G LP LV+ L +
Sbjct: 18 VQQLNSPDQQELQSALRKLS-QIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 240 LSSDKNPPIEALIHSGILPVLVECLERSD 268
++S N I+A+I +G LP LV+ L +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPN 151
Score = 27.2 bits (61), Expect = 4.9
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
V+ N ++ A+ + + S +A+ +G L L + +
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQ-KQAVKEAGALEKLEQLQSHEN 193
Score = 26.8 bits (60), Expect = 6.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 249 EALIHSGILPVLVECLERSDR 269
H LP +V+ L D+
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQ 26
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.011
Identities = 34/274 (12%), Positives = 85/274 (31%), Gaps = 79/274 (28%)
Query: 3 DLVDRRDEAMTSS-LDDLV--PTLSSRIRNQSKSSTLPVVEVVEFKAYKRKSKALEDDPA 59
D+ D ++ +D ++ S F K + +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTL-------------RLFWTLLSKQEEMVQKFV 83
Query: 60 DDQLTANDLVPTLSSRIRNQSKSSTPPVVEVVEFKAYKRKSKALEDDPADDQLTAKKKDE 119
++ L N L S I+ + + + +E ++ + D+ + +
Sbjct: 84 EEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIE-----QRDRLYNDNQVFAKYNVSRLQP 136
Query: 120 VVDMKKARFE------IMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRN 173
+ +++A E ++ G+ LG K +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGV------------------LGSGKTWVA----------L 168
Query: 174 EVTVELRKNKREETLQKRRNVPLA------DSTDEDDIEKMAQVNLDMLVVEAARKD--- 224
+V +Q + + + ++ E +E + ++ + +R D
Sbjct: 169 DVC-------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 225 NPELQLLAVQSA-RKLLSSDKNPPIEALIHSGIL 257
N +L++ ++Q+ R+LL S L+ +L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYE--NCLL---VL 250
Score = 34.8 bits (79), Expect = 0.029
Identities = 41/244 (16%), Positives = 80/244 (32%), Gaps = 47/244 (19%)
Query: 6 DRRDEAMTSSLDDLVPTLSSR-------IRNQSK--SSTLPVV------EVVEFKAYK-R 49
D+ + SSL+ L P + + + L ++ V K
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 50 KSKALEDDPADDQLTANDLVPTLSSRIRNQS---KSSTPPVVEVVEFKAYKRKSKALEDD 106
K +E P + ++ + L ++ N+ +S +V+ Y DD
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS----IVD-----HYNIPKTFDSDD 463
Query: 107 ---PADDQ---------LTAKKKDEVVDMKKARFEIMKFGMN--RMTGREKEKTKDIIA- 151
P DQ L + E + + + F +F R + I+
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 152 -IELGKVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRN-VPLADSTDEDDIEKMA 209
+L K + + D + R N + L K + K + + +A +++ I + A
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Query: 210 --QV 211
QV
Sbjct: 584 HKQV 587
Score = 34.8 bits (79), Expect = 0.031
Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 54/181 (29%)
Query: 4 LVDRRDEAMTSSLDDLVPTLSSRIRNQSKSSTLPVV--EVVEFKAYKRKSKALEDD---P 58
LV+++ + T S+ + + + K + +V+ Y DD P
Sbjct: 416 LVEKQPKESTISIPSI------YLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPP 467
Query: 59 ADDQ---------LTA------NDLVPT-------LSSRIRNQSKS--STPPVVEVV-EF 93
DQ L L L +IR+ S + ++ ++ + +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 94 KAYKRKSKALEDDPADDQLTAKKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIE 153
K YK ++DP ++L I+ F K D++ I
Sbjct: 528 KFYKP--YICDNDPKYERLVN--------------AILDFLPKIEENLICSKYTDLLRIA 571
Query: 154 L 154
L
Sbjct: 572 L 572
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 34.0 bits (78), Expect = 0.044
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 199 STDEDDIEKMAQVN--LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI 256
S E + + + +V ++ E LS + A+ SG
Sbjct: 45 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG-TLHNLSHHREGL-LAIFKSGG 102
Query: 257 LPVLVECLERSD 268
+P LV+ L
Sbjct: 103 IPALVKMLGSPV 114
Score = 32.8 bits (75), Expect = 0.10
Identities = 3/51 (5%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+ ++ + A +L + + + ++ +V ++ ++
Sbjct: 23 TKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTN 72
Score = 28.6 bits (64), Expect = 2.3
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
V R E L K+LS A++ +G + L L
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPS 240
>1qgr_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
Length = 27
Score = 30.0 bits (67), Expect = 0.048
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 169 RRRRNEVTVELRKNKREETLQKRRNV 194
RRRR EV VELRK K+++ + KRRNV
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNV 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 32.2 bits (73), Expect = 0.17
Identities = 3/51 (5%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+ ++ + A +L + + + ++ +V ++ ++
Sbjct: 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTN 69
Score = 27.2 bits (60), Expect = 7.1
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
V K N + + ++L+ ++ SG LV +
Sbjct: 146 VALLNKTNVKFLAITT-DCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Score = 27.2 bits (60), Expect = 7.7
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
V R E L K+LS + A++ +G + L L
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPS 237
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.0 bits (68), Expect = 0.44
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 135 MNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNEVT-VELRKNKREETLQKRRN 193
M R+ K K I LG+ ++ KE+ R +EV V++ + K +
Sbjct: 1 MGRI------KNKQFAVIGLGRFGGSIV---KELHRMGHEVLAVDINEEKVNAYASYATH 51
Query: 194 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKL 239
+A++T+E+++ + N + ++V A N + L ++L
Sbjct: 52 AVIANATEENELLSLGIRNFEYVIV--AIGANIQASTLTTLLLKEL 95
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.3 bits (66), Expect = 0.86
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 175 VTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQ 234
+ +E+R+ ++ + RNV D+TD D E++ LV+ A + + A++
Sbjct: 67 LGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM--PHHQGNQTALE 124
Query: 235 SARKL 239
++
Sbjct: 125 QLQRR 129
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.2
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 229 QLLAVQSARKLLSSDKNP--PIEALI 252
L +Q++ KL + D P I+A +
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
Score = 27.6 bits (60), Expect = 2.6
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 48 KRKSKALEDDPADDQLTANDLVPTLS 73
K+ K L+ A +L A+D P L+
Sbjct: 19 KQALKKLQ---ASLKLYADDSAPALA 41
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 216 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
+V + ++ +LQ + R L + L G + L+EC +
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 184
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 28.8 bits (64), Expect = 2.0
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 216 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
+V + N LS + + A+ SG +P LV L
Sbjct: 196 AIVRTMQNTNDVETARCTSGTLHNLSHHREGLL-AIFKSGGIPALVNMLGSPVD 248
Score = 28.1 bits (62), Expect = 3.8
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
V R E L K+LS A++ +G + L L
Sbjct: 324 VNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPS 373
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 28.8 bits (64), Expect = 2.1
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
+V + ++ +LQ + R L + L G + L+EC +
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 28.6 bits (64), Expect = 2.1
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 137 RMTGREKEKTKD-IIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVP 195
++ G ++ + + R + +N R++ L+ N
Sbjct: 105 KLMGLIDVAKSRHVVICGWSESTLECLR----ELRGSEVFVLAEDENVRKKVLRSGANFV 160
Query: 196 LADSTDEDDIEK---------MAQVNLDM---LVVEAARKDNPELQLLA 232
D T D+EK + + D + RK + ++++A
Sbjct: 161 HGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIA 209
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 2.2
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 158 KHRLIEVDKEMRRRRNEVTVELRKN------KREETLQKRR 192
+ RL E+D + E + +K+ ++ E ++K +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Score = 27.4 bits (60), Expect = 4.4
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 110 DQLTAKKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMR 169
D + + E +KA+ ++ ++ + EK K + R DK
Sbjct: 102 DAASKVMEQEW--REKAKKDLEEWNQRQSEQVEKNKINN-----------R--IADKAFY 146
Query: 170 RRRNEVTV 177
++ + +
Sbjct: 147 QQPDADII 154
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 28.3 bits (62), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 158 KHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK 207
K + +++ RRRR +EL+K+KR + + R + D T + E+
Sbjct: 37 KSKYSSLEQSERRRR---LLELQKSKRLDYVNHARRLAEDDWTGMESEEE 83
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 27.9 bits (62), Expect = 3.8
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Query: 116 KKDEVVDMKKARFE-IMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNE 174
+ ++ + FE K G + R + + GK +H L + +R
Sbjct: 4 DPQKYRELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGK-EHPLFATIQRLREAYLS 62
Query: 175 VTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQ 210
+ N + ++ D
Sbjct: 63 IGFSEVVNPLIVEDVHVKKQFGREALAVLDRCFYLA 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.6 bits (61), Expect = 5.3
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 123 MKKARFEIMKFGMNRMTGREKEK---TKDIIAIELGKVKHRLIEVDKEMRR 170
+ + K + M+ E E K I K+ L V+ EM+
Sbjct: 366 LANLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKS 416
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 26.8 bits (60), Expect = 9.9
Identities = 6/43 (13%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 129 EIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRR 171
+ G+ + ++ + + A E+ K L++ D + ++
Sbjct: 391 KEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKK 432
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.337
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,010,882
Number of extensions: 246963
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 80
Length of query: 269
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 177
Effective length of database: 4,133,061
Effective search space: 731551797
Effective search space used: 731551797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.4 bits)