RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12599
(269 letters)
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 100 bits (249), Expect = 9e-25
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML---------- 216
E+RRRR+ VELRK KR+E L KRRN + D E + V+ D
Sbjct: 20 ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELP 79
Query: 217 -VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+ + D+ + QL A R++LS + PPI+ +I +G++P LVE + +
Sbjct: 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 132
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 67.9 bits (164), Expect = 1e-13
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 44.1 bits (102), Expect = 9e-06
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 165 DKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVN--LDMLVVEAAR 222
D E+ R +L ++ + + K + S E + + + +V
Sbjct: 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 223 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
++ E + L + + A+ SG +P LV+ L
Sbjct: 71 TNDVETARCTAGTLHNLSHHREG--LLAIFKSGGIPALVKMLGSPV 114
>d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 120
Score = 31.0 bits (70), Expect = 0.051
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 155 GKVKHRLIEVDKEMRRRRNEVTVELR-KNKREETLQKRRNVPLADST-DEDDIEKMAQVN 212
++ R+ ++++E + TV + K K E +K V ++ K+
Sbjct: 32 AELTSRIQDLEQEYNKIVIPRTVSISLKTKSYEVYRKSGPVAYKGINFQSHELLKVGIKF 91
Query: 213 LDMLVVEAARKDNPELQLLAV 233
+ L ++ K L L++
Sbjct: 92 VTDLDIKGKNKSYYPLTKLSM 112
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.8 bits (61), Expect = 1.5
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 167 EMRRRRNEVT---VELRKNKREETLQKRRNVP----------LADSTDEDDIEKMAQVNL 213
E++R E+ + + +K + K++ V D + + ++
Sbjct: 21 EIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRY 80
Query: 214 DM-----LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEAL 251
L + N EL L + + L+S +NP L
Sbjct: 81 TEKQIGYLFISVLVNSNSELIRLINNAIKNDLAS-RNPTFMGL 122
Score = 26.3 bits (57), Expect = 5.3
Identities = 32/263 (12%), Positives = 80/263 (30%), Gaps = 39/263 (14%)
Query: 4 LVDRRDEAMTSSLDDLVPTLSSRIRNQSKSSTLPVVEVVEFKAYKRKSKALEDDPADDQL 63
D A+ L + + T+ ++ + KS + ++ S + D + L
Sbjct: 260 YPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL 319
Query: 64 TANDLVPTLSSRIRNQSKSSTPPVVEVVEFKAYKRKSKALEDDPADDQLTAKKKDEVVDM 123
L ++++ + +E + A S + + A K + V +
Sbjct: 320 VR--ACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSV 377
Query: 124 KKARFEIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNK 183
++ +++ + I E+ L D +R
Sbjct: 378 RQRAVDLLYAMCD-------RSNAQQIVAEM---LSYLETADYSIRE------------- 414
Query: 184 REETLQKRRNVPLADSTDED-------DIEKMAQVNLDMLVVEAARK---DNPELQLLAV 233
E + K + + D ++ ++A + V + + ++Q A
Sbjct: 415 --EIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAA 472
Query: 234 QSARKLLSSDKNPPIEALIHSGI 256
++ + L + E L+ G
Sbjct: 473 KTVFEALQAPACH--ENLVKVGG 493
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 27.4 bits (59), Expect = 2.4
Identities = 8/57 (14%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 129 EIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNKRE 185
+ G+ + ++ + + A E+ K L++ D + ++ E+ R +
Sbjct: 389 KEWGVGL-GLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD 444
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA
1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 25.2 bits (55), Expect = 2.8
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 98 RKSKALEDDPA---DDQLTAKKKDEVVDMKKARFEIMKFGMNRMTGRE 142
+K K + A L+ + D + + + +G + T
Sbjct: 8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKAR 55
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 25.9 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 223 KDNPELQLLAVQSARKLLSSDKNPPIEAL 251
K P++ ++AV S K D NP I AL
Sbjct: 75 KSQPDMAIMAVNSFVKDC-EDPNPLIRAL 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.337
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 931,635
Number of extensions: 43983
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 21
Length of query: 269
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,254,276
Effective search space: 232041060
Effective search space used: 232041060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.4 bits)