BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12603
(391 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1
Length = 403
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 175/394 (44%), Positives = 247/394 (62%), Gaps = 17/394 (4%)
Query: 1 DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
DIG N+ TI EVV E+ K RRL VLPY L+ KE P+ + VTEFSKKTGDYPSLS+
Sbjct: 22 DIGKNIYTIREVVREIRDKATRRRLAVLPYQLRFKEPLPEYVRLVTEFSKKTGDYPSLSA 81
Query: 61 TDIKVIALTYELHKQHIGVDSINTEPISRQISY-INHSVLTDKEVLAGFYSPSRGCTFNV 119
TDI+V+ALTY+L + +GV + EP ++S I H ++GF+ PS+
Sbjct: 82 TDIQVLALTYQLEAEFVGVSHLKKEPEKAKVSSSIQHPETALH--ISGFHLPSKSKPLQ- 138
Query: 120 DGGYLEGLCRGFKNGILKQTDYLNLVQCES-LEELEDHTPEVLQKIDHDEEEHSDDSGNE 178
E + RG + ++ + + + L ++ E+L ID EEE ++ +
Sbjct: 139 -----EAVDRGHAADGPENLEFSSFMFWRTPLPNIDRELQELL--IDGREEEEEEEECED 191
Query: 179 DDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRL 238
DDDGG WITPSN+KQ Q+ ++ E + V CVTTDFAMQNVL QMGL+V+A++G L
Sbjct: 192 SDDDGGGWITPSNIKQIQQELEQCDTPED-VQVGCVTTDFAMQNVLLQMGLHVLAVNGML 250
Query: 239 IRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK-RPLTA 297
+RE R++ILRC+ C+KTTS M +VFC CG KTLK+V+V++++ G +H + + L
Sbjct: 251 VREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNP 310
Query: 298 RGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHDIN 357
RG ++SLPT KGGK+A NP + EDQ P R ++ R KT+ PDYIAG+SPFA +DI+
Sbjct: 311 RGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTDVFAPDYIAGVSPFAENDIS 370
Query: 358 SKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK 391
S+SA+L +R+ + NPNA ++K K
Sbjct: 371 SRSAILQVRDGMLGAGRRRL---NPNASRKKFVK 401
>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1
Length = 412
Score = 287 bits (735), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 178/400 (44%), Positives = 246/400 (61%), Gaps = 26/400 (6%)
Query: 1 DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
DIG N+ TI EVV E+ K RRL VLPY+L+ KE P + VTEFSKKTGDYPSLS+
Sbjct: 22 DIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPQYVRLVTEFSKKTGDYPSLSA 81
Query: 61 TDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEV---LAGFYSPSR-GCT 116
TDI+V+ALTY+L + +GV + EP ++S S + E ++GF+ PS+
Sbjct: 82 TDIQVLALTYQLEAEFVGVSHLKQEPQKVKVS----SSIQHPETPLHISGFHLPSKPKSP 137
Query: 117 FNVDGGY-------LEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEE 169
+ G+ LE F L D+ E E L D + +V K + + E
Sbjct: 138 QEAEKGHPACEPENLEFSSFMFWRNPLPSIDH------ELQELLIDRSEDVPSKEEEEAE 191
Query: 170 EHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGL 229
+D ++ DDDGG WITP+N+KQ Q+ ++ K + V CVTTDFAMQNVL QMGL
Sbjct: 192 NGFEDRKDDSDDDGGGWITPNNIKQIQQELEQCDV-PKDVRVGCVTTDFAMQNVLLQMGL 250
Query: 230 NVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHI 289
+V+A++G LIRE R++ILRC+ C+KTTS M++VFC CG KTLK+V+V+V + G +H
Sbjct: 251 HVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCAHCGNKTLKKVSVTVSDDGALHMHF 310
Query: 290 NLK-RPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGM 348
+ + L RG ++SLPT KGGK+A NP + EDQ P R +R R KTN PDYIAG+
Sbjct: 311 SRNPKVLNPRGLRYSLPTPKGGKYAVNPHLTEDQRFPQLRLSRKARQKTNVFAPDYIAGV 370
Query: 349 SPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRK 388
SPF +D++S+SA L +R++ + NPNA ++K
Sbjct: 371 SPFVENDVSSRSATLQVRDSTLGAGRRRL---NPNASRKK 407
>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1
Length = 413
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/396 (44%), Positives = 243/396 (61%), Gaps = 11/396 (2%)
Query: 1 DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
DIG N+ TI V++E+ K RRL VLPY+L+ KE P+ + VTEFSKKTGDYPSLS+
Sbjct: 22 DIGKNIYTIRNVISEIRDKATRRRLAVLPYELRFKEPFPEYVRLVTEFSKKTGDYPSLSA 81
Query: 61 TDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGC----T 116
TDI+V+ALTY+L + +GV + EP ++S T V +GF+ PS+ T
Sbjct: 82 TDIQVLALTYQLEAEFVGVSHLKQEPEKVKVSSSIQHPETPLHV-SGFHLPSKPKPPRET 140
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSG 176
E F + + + N + CE E L D +V + + +E +
Sbjct: 141 VEHRHPASEPEDLEFSSFMFWRNPLPN-IDCELQELLMDGGEDVPNEEEDEENGLDERQD 199
Query: 177 NEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDG 236
+ DDDGG WITPSN+KQ Q+ M K + V CVTTDFAMQNVL QMGL+V+A++G
Sbjct: 200 EDSDDDGGGWITPSNIKQIQQEMKQCAVP-KDVRVGCVTTDFAMQNVLLQMGLHVLAVNG 258
Query: 237 RLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK-RPL 295
LIRE R++ILRC+ C+KTTS M++VFC CG KTLK+V+V+V + G +H + + L
Sbjct: 259 MLIREARSYILRCHGCFKTTSDMSRVFCAHCGNKTLKKVSVTVSDDGTLHMHFSRNPKVL 318
Query: 296 TARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGMSPFAVHD 355
RG ++SLPT KGGK+A NP + EDQ P R +R R KT+ PDY+AG+SPFA +D
Sbjct: 319 NPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSRKARQKTDVFAPDYVAGVSPFAEND 378
Query: 356 INSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK 391
I+S+SA L +R++ + NPNA ++K K
Sbjct: 379 ISSRSATLQVRDSTLGAGRRRL---NPNASRKKFVK 411
>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1
Length = 411
Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 178/417 (42%), Positives = 239/417 (57%), Gaps = 55/417 (13%)
Query: 1 DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
DIG N+ TI EVV E+ K RRL VLPY+L+ KE P+ + VTEFSKKTGDYPSLS+
Sbjct: 22 DIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSLSA 81
Query: 61 TDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEV---LAGFYSPSRGCTF 117
TDI+V+ALTY+L + +GV + EP ++S S + E ++GF+ PS+
Sbjct: 82 TDIQVLALTYQLEAEFVGVSHLKQEPQKVKVS----SSIQHPETPLHISGFHLPSKPKP- 136
Query: 118 NVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHT----PEVLQKIDHDEEEHSD 173
Q CE E LE + L IDH+ +E
Sbjct: 137 -------------------PQETEKGHPACEP-ENLEFSSFMFWRNPLPNIDHELQELLI 176
Query: 174 DSGNEDDDD------GGE------------WITPSNLKQAQRTMDARQYEEKPLVVSCVT 215
D G + D G E WITPSN+KQ Q+ ++ E + V CVT
Sbjct: 177 DRGEDIPSDEEEEENGFEDRRDDSDDDGGGWITPSNIKQIQQELEQCDVPED-VRVGCVT 235
Query: 216 TDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRV 275
TDFAMQNVL QMGL+V+A++G LIRE R++ILRC+ C+KTTS M++VFC CG KTLK+V
Sbjct: 236 TDFAMQNVLLQMGLHVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKV 295
Query: 276 AVSVDEQGKQKIHINLK-RPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGR 334
+V+V + G +H + + L RG ++SLPT KGGK+A NP + EDQ P R +R R
Sbjct: 296 SVTVSDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSRKAR 355
Query: 335 TKTNALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK 391
KTN PDY+AG+SPF +DI+S+SA L +R++ + NPNA +RK K
Sbjct: 356 QKTNVFAPDYVAGVSPFVENDISSRSATLQVRDSSLGAGRRRL---NPNASRRKFVK 409
>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1
Length = 410
Score = 282 bits (721), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 176/414 (42%), Positives = 243/414 (58%), Gaps = 50/414 (12%)
Query: 1 DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
DIG N+ TI EVV E+ K RRL VLPY+L+ KE P+ + VTEFSKKTGDYPSLS+
Sbjct: 22 DIGKNIYTIREVVREIRDKATRRRLAVLPYELRFKEPFPEYVRLVTEFSKKTGDYPSLSA 81
Query: 61 TDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEV---LAGFYSPSRGCTF 117
TDI+V+ALTY+L + +GV + EP ++S S + E ++GF+ PS+
Sbjct: 82 TDIQVLALTYQLEAEFVGVSHLKKEPEKVKVS----SSIQHPETPLHISGFHLPSKSKAL 137
Query: 118 N--VDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDS 175
VD G D ++ S + P IDH+ ++ D
Sbjct: 138 QETVDHG--------------PPADGSENLEFSSFMFWRNPLPN----IDHELQQLLIDG 179
Query: 176 ----------------GNEDDDDGGEWITPSNLKQAQRTMDARQYE-EKPLVVSCVTTDF 218
+ DDDGG WITPSN+KQ Q ++ Q + K + V CVTTDF
Sbjct: 180 REEEEEEEEEEEEEDELEDSDDDGGGWITPSNIKQIQH--ESEQCDIPKDVQVGCVTTDF 237
Query: 219 AMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVS 278
AMQNVL QMGL+V+A++G L+RE R++ILRC+ C+KTTS M +VFC CG KTLK+V+V+
Sbjct: 238 AMQNVLLQMGLHVLAVNGMLVREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVT 297
Query: 279 VDEQGKQKIHINLK-RPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKT 337
+++ G +H + + L RG ++SLPT KGGK+A NP + EDQ P R + R KT
Sbjct: 298 INDDGTLHMHFSRNPKVLNPRGLRYSLPTPKGGKYAVNPHLTEDQRFPQLRLSHKARQKT 357
Query: 338 NALDPDYIAGMSPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK 391
N PDYIAG+SPFA +DI+S+SA+L +R++ + NPNA ++K K
Sbjct: 358 NVFAPDYIAGVSPFAENDISSRSAILQVRDSMLGAGRRRL---NPNASRKKFVK 408
>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1
Length = 412
Score = 281 bits (719), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 178/403 (44%), Positives = 247/403 (61%), Gaps = 26/403 (6%)
Query: 1 DIGDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSS 60
DIG N+ TI EVV E+ K RRL VLPY+L+ KE P+ + VTEFSKKTGDYPSLS+
Sbjct: 22 DIGKNIYTIREVVTEIRDKATRRRLAVLPYELRFKEPLPEYVRLVTEFSKKTGDYPSLSA 81
Query: 61 TDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEV---LAGFYSPSR-GCT 116
TDI+V+ALTY+L + +GV + EP ++S S + E ++GF+ P +
Sbjct: 82 TDIQVLALTYQLEAEFVGVSHLKQEPQKVKVS----SSIQHPETPLHISGFHLPYKPKPP 137
Query: 117 FNVDGGY-------LEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEE 169
+ G+ LE F L D+ E E L D +V + + +EE
Sbjct: 138 QETEKGHSACEPENLEFSSFMFWRNPLPNIDH------ELQELLIDRGEDVPSEEEEEEE 191
Query: 170 EHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGL 229
+D ++ DDDGG WITPSN+KQ Q+ ++ E + V C+TTDFAMQNVL QMGL
Sbjct: 192 NGFEDRKDDSDDDGGGWITPSNIKQIQQELEQCDVPED-VRVGCLTTDFAMQNVLLQMGL 250
Query: 230 NVVALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHI 289
+V+A++G LIRE R++ILRC+ C+KTTS M++VFC CG KTLK+V+V+V + G +H
Sbjct: 251 HVLAVNGMLIREARSYILRCHGCFKTTSDMSRVFCSHCGNKTLKKVSVTVSDDGTLHMHF 310
Query: 290 NLK-RPLTARGKKFSLPTFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGM 348
+ + L RG ++SLPT KGGK+A NP + EDQ P R ++ R KTN PDYIAG+
Sbjct: 311 SRNPKVLNPRGLRYSLPTPKGGKYAINPHLTEDQRFPQLRLSQKARQKTNVFAPDYIAGV 370
Query: 349 SPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAKK 391
SPF +DI+S+SA L +R++ + NPNA ++K K
Sbjct: 371 SPFVENDISSRSATLQVRDSTLGAGRRRL---NPNASRKKFVK 410
>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1
Length = 388
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 193/402 (48%), Gaps = 53/402 (13%)
Query: 3 GDNVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTD 62
++ TIP V+ E+ + + + + + P+ I V+EF+K+TGDY SLS TD
Sbjct: 26 AESFYTIPRVIAEIRDETSRKNFELWGDQVIQRVPKPEFIKKVSEFAKQTGDYSSLSVTD 85
Query: 63 IKVIALTYELHKQHIGVD-SINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDG 121
I+++ALTYEL + G D + P + +IN ++ P+ T +V
Sbjct: 86 IQILALTYELEVEFNGGDWRLRKYPGQK---HINGKPPSNSNSTEDASKPTSSDTASV-- 140
Query: 122 GYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDDD 181
K+T+ + E+ E LE T + +++E H + N++ +
Sbjct: 141 ---------------KETENSDPKSAEN-EVLEGETTQ----HSNNKEAHPNTEENKEQE 180
Query: 182 DGGE------WITPSNL--KQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVA 233
D E WITPSN+ K+A+ + + K L V+C TTDF+MQNVL Q+GLN+V+
Sbjct: 181 DNEEDDEDDGWITPSNIRKKKAEDGVGESLVQPKHLKVACATTDFSMQNVLLQIGLNLVS 240
Query: 234 LDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKR 293
DG I+ ++ F+LRC+ CY M K FCP CG TL + S++ +G+ ++H+
Sbjct: 241 SDGFKIQNVKRFVLRCHGCYTVVKDMEKKFCPSCGGNTLIKTTCSINSKGEFQVHLKKNF 300
Query: 294 PLTARGKKFSLPT----FKGGKHANNPIVAEDQPVPDQRPTRLGRTK-TNALDPDYIAGM 348
RG K+SLP GK NP++ EDQP + R+ R K + +D DY+ +
Sbjct: 301 EWKTRGTKYSLPKPVHGTSNGKGKKNPVLREDQPEYQRAVRRMQRKKEIDLMDEDYLPSL 360
Query: 349 SPFAVHDINSKSAMLGIRNNGKNNEVKYWMYKNPNAVKRKAK 390
D G KNPN V+RK +
Sbjct: 361 LTGVTKDRMYVQIGAG--------------RKNPNEVRRKKR 388
>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1
Length = 459
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 46/233 (19%)
Query: 178 EDDDDGGEWITPSNLKQA---------QRTMDARQYEEKPLV--------VSCVTTDFAM 220
ED DD G+WITP NL +A ++ EE V V+ T DFA+
Sbjct: 215 EDADDDGDWITPENLTEAIIKDSGEDTTGSLGVEASEEDRHVALNRPENQVALATGDFAV 274
Query: 221 QNVLKQMGLNVVA-LDGRLIRELRTFILRCYACYKTTSI----MTKVFCPKCGYK-TLKR 274
QNV QM LN++ + G I+ +R ++LRC+AC+K + K FC CG + TL R
Sbjct: 275 QNVALQMNLNLMNFMSGLKIKRIRNYMLRCHACFKIFPLPKDGKPKHFCASCGGQGTLLR 334
Query: 275 VAVSVDEQ-GKQKIHINLKRPLTARGKKFSLPT-----------FKGGKHA---NNPIVA 319
AVSVD + G H+ RG ++S+ + KG H+ N I+
Sbjct: 335 CAVSVDSRTGNVTPHLKSNFQWNNRGNRYSVASPLSKNSQKRYGKKGHVHSKPQENVILR 394
Query: 320 EDQPVPDQ--RPTRLGRTKTNALDPDYIAG------MSPFAVHDINSKSAMLG 364
EDQ ++ + R + ++I G +SPFA+ + + +G
Sbjct: 395 EDQKEYEKVIKQEEWTRRHNEKILNNWIGGGSADNYISPFAITGLKQHNVRIG 447
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 8 TIPEVVNEVTSKRQIRRLVVLPYDLQIKEADP--DSISFVTEFSKKTGDYPSLSSTDIKV 65
T P V E+ + + L + +K P +SI+ V+ F+K TGDY LS+ D+ +
Sbjct: 36 TTPTVFQEIKDAQARKNLEIWQSLGTLKLVHPSENSIAKVSTFAKLTGDYSVLSANDLHI 95
Query: 66 IALTYEL 72
+ALTYEL
Sbjct: 96 LALTYEL 102
>sp|Q25531|VA0D_MANSE V-type proton ATPase subunit d OS=Manduca sexta PE=2 SV=1
Length = 348
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 40/44 (90%)
Query: 113 RGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDH 156
+GC FN+D GYLEGLCRGFK GILKQ+DYLNLVQCE+LE+L+ H
Sbjct: 2 KGCIFNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLH 45
>sp|Q9W4P5|VA0D1_DROME V-type proton ATPase subunit d 1 OS=Drosophila melanogaster
GN=VhaAC39-1 PE=2 SV=1
Length = 350
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 38/45 (84%)
Query: 112 SRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDH 156
S G FN+D GYLEGLCRGFK GILKQ DYLNLVQCE+LE+L+ H
Sbjct: 3 SSGFMFNIDNGYLEGLCRGFKCGILKQADYLNLVQCETLEDLKLH 47
>sp|Q6P335|VA0D2_XENTR V-type proton ATPase subunit d 2 OS=Xenopus tropicalis GN=atp6v0d2
PE=2 SV=1
Length = 350
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 38/50 (76%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RGFK GIL+ TDYLNL QCE+LE+L+ H LQ D+
Sbjct: 8 FNVDSGYLEGLVRGFKGGILRSTDYLNLAQCETLEDLKLH----LQSTDY 53
>sp|Q5R6I1|VA0D1_PONAB V-type proton ATPase subunit d 1 OS=Pongo abelii GN=ATP6V0D1 PE=2
SV=1
Length = 351
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K G+L Q DYLNLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLH----LQSTDY 54
>sp|P51863|VA0D1_MOUSE V-type proton ATPase subunit d 1 OS=Mus musculus GN=Atp6v0d1 PE=1
SV=2
Length = 351
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K G+L Q DYLNLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLH----LQSTDY 54
>sp|P61421|VA0D1_HUMAN V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1
SV=1
Length = 351
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K G+L Q DYLNLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLH----LQSTDY 54
>sp|P61420|VA0D1_BOVIN V-type proton ATPase subunit d 1 OS=Bos taurus GN=ATP6V0D1 PE=1
SV=1
Length = 351
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K G+L Q DYLNLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLH----LQSTDY 54
>sp|Q5ZHL0|VA0D2_CHICK V-type proton ATPase subunit d 2 OS=Gallus gallus GN=ATP6V0D2 PE=2
SV=1
Length = 351
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RGFK GIL DY+NL QCE+LE+L+ H LQ D+
Sbjct: 9 FNVDHGYLEGLVRGFKAGILTSADYVNLAQCETLEDLKLH----LQTTDY 54
>sp|Q9VCQ3|VA0D2_DROME Probable V-type proton ATPase subunit d 2 OS=Drosophila
melanogaster GN=VhaAC39-2 PE=2 SV=1
Length = 350
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEEL 153
FN + GYLE L RGFKNG+LK +DYLNL QCESLE++
Sbjct: 5 FNTEYGYLEALTRGFKNGMLKHSDYLNLTQCESLEDV 41
>sp|Q5R7B7|VA0D2_PONAB V-type proton ATPase subunit d 2 OS=Pongo abelii GN=ATP6V0D2 PE=2
SV=2
Length = 350
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K +L Q DY+NLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDHGYLEGLVRGCKASLLTQQDYINLVQCETLEDLKIH----LQTTDY 54
>sp|Q5FVL0|VA0D2_RAT V-type proton ATPase subunit d 2 OS=Rattus norvegicus GN=Atp6v0d2
PE=2 SV=1
Length = 350
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K +L Q DY+NLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDHGYLEGLVRGCKASLLTQQDYVNLVQCETLEDLKIH----LQTTDY 54
>sp|Q80SY3|VA0D2_MOUSE V-type proton ATPase subunit d 2 OS=Mus musculus GN=Atp6v0d2 PE=2
SV=2
Length = 350
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K +L Q DY+NLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDHGYLEGLVRGCKASLLTQQDYVNLVQCETLEDLKIH----LQTTDY 54
>sp|Q8N8Y2|VA0D2_HUMAN V-type proton ATPase subunit d 2 OS=Homo sapiens GN=ATP6V0D2 PE=2
SV=1
Length = 350
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FNVD GYLEGL RG K +L Q DY+NLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNVDHGYLEGLVRGCKASLLTQQDYINLVQCETLEDLKIH----LQTTDY 54
>sp|Q2KJB6|VA0D2_BOVIN V-type proton ATPase subunit d 2 OS=Bos taurus GN=ATP6V0D2 PE=2
SV=1
Length = 351
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 117 FNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDH 166
FN D GYLEGL RG K G+L + DY+NLVQCE+LE+L+ H LQ D+
Sbjct: 9 FNADHGYLEGLVRGCKAGLLTRRDYVNLVQCENLEDLKIH----LQTTDY 54
>sp|P32366|VA0D_YEAST V-type proton ATPase subunit d OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=VMA6 PE=1 SV=2
Length = 345
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 114 GCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELE 154
G FN+D G++EG+ RG++NG+L Y+NL QC++LE+L+
Sbjct: 3 GVYFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLK 43
>sp|P54641|VA0D_DICDI V-type proton ATPase subunit d OS=Dictyostelium discoideum
GN=vatD-1 PE=1 SV=2
Length = 356
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 116 TFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDH 156
TFN D GYLE + RGFK GIL + DY NL QC++LE+++ H
Sbjct: 14 TFNKDDGYLEAILRGFKKGILSRADYNNLCQCDNLEDMKMH 54
>sp|P53659|VA0D_NEUCR V-type proton ATPase subunit d OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=vma-6 PE=3 SV=1
Length = 364
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 114 GCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELE 154
G FNV+ GY+EG+ RG++N +L T+Y N+ QCES+++L+
Sbjct: 3 GLLFNVNNGYIEGIVRGYRNSLLTSTNYTNMTQCESIDDLK 43
>sp|Q9LJI5|VA0D1_ARATH V-type proton ATPase subunit d1 OS=Arabidopsis thaliana GN=VHA-D1
PE=2 SV=1
Length = 351
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 116 TFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDH 156
TFN+ GGYLE + RG + G+L DY NL QCE+L++++ H
Sbjct: 8 TFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMH 48
>sp|Q9LHA4|VA0D2_ARATH V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2
PE=2 SV=1
Length = 351
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 116 TFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDH 156
TFN+ GGYLE + RG + G+L DY NL QCE+L++++ H
Sbjct: 8 TFNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMH 48
>sp|O29862|VAPC8_ARCFU Putative ribonuclease VapC8 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=vapC8 PE=3 SV=1
Length = 166
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 5 NVITIPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIK 64
N++T+PEVV E+ + L + +++EA P+S+ V E ++KTGD LS TDIK
Sbjct: 23 NMVTVPEVVAEILD--EASALYFSVKNFRVEEASPESVEEVKEAARKTGDIHKLSDTDIK 80
Query: 65 VIA 67
V+A
Sbjct: 81 VLA 83
>sp|O13753|VA0D_SCHPO V-type proton ATPase subunit d OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vma6 PE=3 SV=1
Length = 343
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 114 GCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEEL 153
+FN + GY+E L RG+++ +L+Q Y NL QCESLE+
Sbjct: 3 ALSFNTNSGYIEALVRGYESALLEQHIYSNLSQCESLEDF 42
>sp|Q8RU33|VA0D_ORYSJ Probable V-type proton ATPase subunit d OS=Oryza sativa subsp.
japonica GN=Os01g0587000 PE=2 SV=1
Length = 351
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 116 TFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDH 156
+FN+ G+LE + RG ++G+L DY NL QCE+L++++ H
Sbjct: 8 SFNIHDGFLEAIVRGNRSGLLTAADYNNLCQCENLDDVKMH 48
>sp|O58440|VAPC6_PYRHO Putative ribonuclease VapC6 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=vapC6 PE=1 SV=1
Length = 161
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 8 TIPEVVNEVTSKRQIRRLVVLPYDLQIKEADP--DSISFVTEFSKKTGDYPSLSSTDIKV 65
T P VV E+ + L L ++K A+P +SI + + +K+TG+ LS DI+V
Sbjct: 26 TTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKADIEV 85
Query: 66 IALTYELHKQHIGVDSINTEPIS 88
+AL YEL K I D N + I+
Sbjct: 86 LALAYEL-KGEIFSDDYNVQNIA 107
>sp|Q9UZ20|VPC14_PYRAB Putative ribonuclease VapC14 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=vapC14 PE=3 SV=1
Length = 161
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 8 TIPEVVNEVTSKRQIRRLVVLPYDLQIKEADP--DSISFVTEFSKKTGDYPSLSSTDIKV 65
T P+VV+EV + L L ++K +P +++ V + KTG+ LS D++V
Sbjct: 24 TTPKVVDEVKDRESRILLESLISSGKVKVVEPSKEALRAVKNAALKTGEIEELSEADLEV 83
Query: 66 IALTYELHKQHIGVDSINTEPISR 89
+AL YEL K + D N + ++R
Sbjct: 84 LALAYEL-KAEVFSDDYNVQNVAR 106
>sp|O27890|VAPC2_METTH Putative ribonuclease VapC2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=vapC2 PE=3 SV=1
Length = 171
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 32 LQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELH 73
L+I E DP+S+ V + ++GD LS TD++VI L L
Sbjct: 57 LKITEPDPESMKVVEDAISESGDIMRLSPTDMEVIGLAVSLR 98
>sp|O09126|SEM4D_MOUSE Semaphorin-4D OS=Mus musculus GN=Sema4d PE=1 SV=2
Length = 861
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 116 TFNVDGGYLEGLCRGFKNGIL-----KQTDYLNLVQC--ESLEELEDHTPEVLQKIDHDE 168
++N GYL G C F++ +L ++D+ +L Q E+L E P + + D
Sbjct: 751 SYNCYKGYLPGQCLKFRSALLLGKKTPKSDFSDLEQSVKETLVE-----PGSFSQQNGDH 805
Query: 169 EEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSC 213
+ + D+G E + D P++ + +QR +D +KP V C
Sbjct: 806 PKPALDTGYETEQDTITSKVPTDREDSQR-IDELSARDKPFDVKC 849
>sp|P38968|SEC31_YEAST Protein transport protein SEC31 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC31 PE=1 SV=3
Length = 1273
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 143 NLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWI 187
NL++ S++ E+ E L D+DE + DD+ NE +DDG E+
Sbjct: 448 NLLEKLSMDGTEEFLKEAL-AFDNDESDAQDDANNEKEDDGEEFF 491
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,487,641
Number of Sequences: 539616
Number of extensions: 6896422
Number of successful extensions: 30092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 29637
Number of HSP's gapped (non-prelim): 329
length of query: 391
length of database: 191,569,459
effective HSP length: 119
effective length of query: 272
effective length of database: 127,355,155
effective search space: 34640602160
effective search space used: 34640602160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)