Query psy12603
Match_columns 391
No_of_seqs 173 out of 355
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:31:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2con_A RUH-035 protein, NIN on 100.0 2.3E-41 7.7E-46 268.8 5.2 77 233-309 2-79 (79)
2 2lcq_A Putative toxin VAPC6; P 100.0 4E-30 1.4E-34 230.8 11.7 132 5-275 27-161 (165)
3 3ix7_A Uncharacterized protein 96.0 0.014 4.7E-07 50.5 6.7 52 4-72 31-97 (134)
4 3irb_A Uncharacterized protein 95.7 0.0039 1.4E-07 54.4 2.1 41 243-285 44-84 (145)
5 2apo_B Ribosome biogenesis pro 93.9 0.022 7.7E-07 42.6 1.8 28 243-273 3-30 (60)
6 2aus_D NOP10, ribosome biogene 93.8 0.025 8.5E-07 42.3 1.9 28 243-273 2-29 (60)
7 2kdx_A HYPA, hydrogenase/ureas 93.5 0.052 1.8E-06 45.5 3.7 30 244-273 71-102 (119)
8 1twf_L ABC10-alpha, DNA-direct 93.1 0.043 1.5E-06 42.3 2.2 32 243-274 25-58 (70)
9 2gnr_A Conserved hypothetical 92.9 0.037 1.3E-06 48.2 2.0 42 242-285 43-84 (145)
10 3i8o_A KH domain-containing pr 92.3 0.16 5.3E-06 44.3 5.0 24 213-236 109-132 (142)
11 3v2d_6 50S ribosomal protein L 90.1 0.084 2.9E-06 38.6 0.9 30 245-274 9-50 (54)
12 3r8s_1 50S ribosomal protein L 89.5 0.11 3.7E-06 37.4 1.1 30 245-274 6-47 (50)
13 2zjr_1 50S ribosomal protein L 89.1 0.17 5.7E-06 37.2 1.9 31 244-274 9-51 (55)
14 3bbo_3 Ribosomal protein L33; 88.9 0.19 6.5E-06 38.2 2.1 14 261-274 49-62 (66)
15 3na7_A HP0958; flagellar bioge 88.3 0.13 4.6E-06 48.3 1.2 34 227-270 189-231 (256)
16 4ayb_P DNA-directed RNA polyme 88.2 0.21 7.1E-06 35.5 1.8 30 246-275 3-37 (48)
17 3a43_A HYPD, hydrogenase nicke 87.7 0.34 1.1E-05 41.8 3.3 31 243-273 67-119 (139)
18 2ftc_P Mitochondrial ribosomal 86.9 0.27 9.1E-06 35.6 1.8 30 245-274 10-49 (52)
19 1nkw_1 50S ribosomal protein L 86.0 0.31 1.1E-05 38.5 1.9 31 244-274 36-78 (82)
20 2k4x_A 30S ribosomal protein S 84.0 0.37 1.3E-05 35.2 1.4 11 261-271 18-28 (55)
21 3h0g_L DNA-directed RNA polyme 81.5 0.61 2.1E-05 35.1 1.8 31 245-275 20-52 (63)
22 3pwf_A Rubrerythrin; non heme 81.2 0.79 2.7E-05 40.7 2.7 26 243-270 137-162 (170)
23 1k81_A EIF-2-beta, probable tr 79.1 0.5 1.7E-05 31.5 0.5 25 233-257 8-32 (36)
24 3j20_Y 30S ribosomal protein S 78.7 0.77 2.6E-05 32.8 1.4 13 260-272 18-30 (50)
25 1ffk_W Ribosomal protein L37AE 76.9 1.4 4.6E-05 34.1 2.5 20 260-279 26-45 (73)
26 2gmg_A Hypothetical protein PF 75.3 1.4 4.7E-05 36.4 2.3 35 241-275 62-98 (105)
27 3iz5_m 60S ribosomal protein L 73.9 0.96 3.3E-05 36.5 1.0 20 260-279 35-54 (92)
28 3j21_i 50S ribosomal protein L 73.8 1 3.6E-05 35.6 1.1 19 260-278 34-52 (83)
29 3cc2_Z 50S ribosomal protein L 73.0 1 3.6E-05 37.7 1.0 18 260-277 59-76 (116)
30 2jrp_A Putative cytoplasmic pr 72.1 1.5 5E-05 34.6 1.6 31 246-278 18-51 (81)
31 3izc_m 60S ribosomal protein R 71.4 1.2 4.1E-05 36.0 0.9 20 260-279 35-54 (92)
32 1lko_A Rubrerythrin all-iron(I 68.9 3 0.0001 37.5 3.1 24 246-270 155-180 (191)
33 3u50_C Telomerase-associated p 68.3 3.2 0.00011 37.0 3.2 44 244-287 40-90 (172)
34 4a17_Y RPL37A, 60S ribosomal p 67.9 1.3 4.3E-05 36.5 0.4 20 260-279 35-54 (103)
35 3ir9_A Peptide chain release f 67.0 3.2 0.00011 36.6 2.9 28 243-270 75-112 (166)
36 3cng_A Nudix hydrolase; struct 67.0 6.8 0.00023 34.1 5.1 55 248-305 5-70 (189)
37 6rxn_A Rubredoxin; electron tr 66.5 2.9 9.9E-05 29.4 2.0 24 247-270 5-39 (46)
38 1yuz_A Nigerythrin; rubrythrin 66.4 2.8 9.7E-05 38.1 2.5 25 246-270 171-195 (202)
39 1ryq_A DNA-directed RNA polyme 66.4 2.6 9E-05 32.2 1.9 22 246-270 11-32 (69)
40 3j21_j 50S ribosomal protein L 65.8 2 6.8E-05 34.8 1.2 18 261-278 8-25 (94)
41 3jyw_9 60S ribosomal protein L 65.6 1.2 4E-05 34.4 -0.2 20 260-279 25-44 (72)
42 1vq8_3 50S ribosomal protein L 65.4 1.8 6.2E-05 34.9 0.9 18 261-278 8-25 (92)
43 3j21_g 50S ribosomal protein L 64.3 4.7 0.00016 29.0 2.8 28 245-273 13-40 (51)
44 1qxf_A GR2, 30S ribosomal prot 63.9 2.5 8.4E-05 32.0 1.3 25 246-270 7-35 (66)
45 1r8o_B STI, kunitz trypsin inh 63.8 7.1 0.00024 29.9 3.9 29 259-289 29-57 (71)
46 3j20_Y 30S ribosomal protein S 63.6 2.3 7.9E-05 30.3 1.1 39 229-270 5-46 (50)
47 1twf_I B12.6, DNA-directed RNA 63.5 2.3 7.9E-05 35.6 1.2 15 260-274 3-17 (122)
48 1vk6_A NADH pyrophosphatase; 1 63.5 5.4 0.00019 37.6 3.9 55 247-305 108-169 (269)
49 4a18_C 60S ribosomal protein L 62.2 2.3 7.7E-05 35.3 0.9 18 261-278 9-26 (109)
50 2kwq_A Protein MCM10 homolog; 61.6 5.3 0.00018 32.1 2.9 39 238-278 41-82 (92)
51 3h0g_I DNA-directed RNA polyme 61.0 2.8 9.6E-05 34.6 1.3 14 261-274 4-17 (113)
52 3ga8_A HTH-type transcriptiona 60.8 6 0.00021 30.2 3.1 13 262-274 3-15 (78)
53 3cng_A Nudix hydrolase; struct 60.3 3.1 0.00011 36.3 1.5 13 262-274 4-16 (189)
54 3o9x_A Uncharacterized HTH-typ 58.8 4.3 0.00015 33.3 2.1 31 262-306 3-33 (133)
55 1vq8_Z 50S ribosomal protein L 58.2 3.9 0.00013 32.2 1.6 18 260-277 26-43 (83)
56 3qt1_I DNA-directed RNA polyme 57.8 2.9 0.0001 35.7 0.9 15 260-274 23-37 (133)
57 1ltl_A DNA replication initiat 57.3 6.1 0.00021 37.3 3.1 45 226-271 109-166 (279)
58 2fiy_A Protein FDHE homolog; F 57.1 8.2 0.00028 37.4 4.0 30 246-278 208-237 (309)
59 3j20_W 30S ribosomal protein S 56.7 4.1 0.00014 30.6 1.4 25 246-270 15-43 (63)
60 3p8b_A DNA-directed RNA polyme 56.3 5 0.00017 31.5 1.9 22 247-271 24-45 (81)
61 3u5c_b RP61, YS20, 40S ribosom 53.8 5.3 0.00018 31.4 1.7 25 246-270 34-62 (82)
62 3bvo_A CO-chaperone protein HS 53.5 5.5 0.00019 36.3 2.0 23 247-269 11-35 (207)
63 1h7b_A Anaerobic ribonucleotid 53.4 2.5 8.6E-05 44.7 -0.3 25 246-270 540-567 (605)
64 1gh9_A 8.3 kDa protein (gene M 53.3 4.1 0.00014 31.2 0.9 24 245-270 3-29 (71)
65 3axs_A Probable N(2),N(2)-dime 53.3 6.2 0.00021 39.3 2.5 37 243-279 241-281 (392)
66 3m7n_A Putative uncharacterize 53.2 3.5 0.00012 36.6 0.6 34 244-277 138-172 (179)
67 2xzm_6 RPS27E; ribosome, trans 52.2 5.2 0.00018 31.4 1.4 24 247-270 33-60 (81)
68 1nee_A EIF-2-beta, probable tr 51.9 4.6 0.00016 34.7 1.2 47 212-258 80-135 (138)
69 2v3b_B Rubredoxin 2, rubredoxi 51.5 8.2 0.00028 28.0 2.3 25 246-270 3-45 (55)
70 3iz6_X 40S ribosomal protein S 51.2 5.9 0.0002 31.5 1.6 24 247-270 37-64 (86)
71 1e8j_A Rubredoxin; iron-sulfur 51.2 9.1 0.00031 27.4 2.5 25 246-270 3-45 (52)
72 1z60_A TFIIH basal transcripti 50.7 5.1 0.00018 29.6 1.1 22 249-270 18-39 (59)
73 1dx8_A Rubredoxin; electron tr 49.6 7.8 0.00027 29.5 2.0 25 246-270 7-49 (70)
74 2kn9_A Rubredoxin; metalloprot 49.6 8.7 0.0003 30.2 2.3 31 238-270 21-69 (81)
75 2e9h_A EIF-5, eukaryotic trans 49.4 6.8 0.00023 34.4 1.8 49 211-259 80-139 (157)
76 1yk4_A Rubredoxin, RD; electro 49.4 10 0.00035 27.1 2.5 25 246-270 2-44 (52)
77 1ma3_A SIR2-AF2, transcription 48.8 12 0.0004 34.9 3.5 42 230-278 113-163 (253)
78 4rxn_A Rubredoxin; electron tr 48.5 8.7 0.0003 27.8 2.0 24 247-270 4-45 (54)
79 3e20_C Eukaryotic peptide chai 48.4 4.3 0.00015 41.3 0.4 30 241-270 332-372 (441)
80 2d74_B Translation initiation 48.3 5.2 0.00018 34.9 0.9 49 211-259 81-138 (148)
81 1pft_A TFIIB, PFTFIIBN; N-term 46.4 4.7 0.00016 28.1 0.3 7 263-269 7-13 (50)
82 3lpe_B DNA-directed RNA polyme 46.3 7.9 0.00027 28.6 1.5 41 247-298 2-43 (59)
83 3v2d_Y 50S ribosomal protein L 45.6 19 0.00065 29.7 3.9 28 261-290 73-101 (110)
84 1w8i_A Putative VAPC ribonucle 45.3 68 0.0023 26.6 7.6 71 4-75 37-116 (156)
85 1q14_A HST2 protein; histone d 44.9 17 0.0006 35.8 4.2 47 225-279 126-187 (361)
86 3fac_A Putative uncharacterize 44.9 6.1 0.00021 32.3 0.8 15 258-272 64-78 (118)
87 2g2k_A EIF-5, eukaryotic trans 43.6 9.2 0.00031 34.1 1.8 26 233-258 104-131 (170)
88 2zjr_Z 50S ribosomal protein L 43.5 10 0.00034 28.0 1.7 21 247-269 31-51 (60)
89 1s24_A Rubredoxin 2; electron 43.4 13 0.00043 29.6 2.4 25 246-270 35-77 (87)
90 1q1a_A HST2 protein; ternary c 43.1 16 0.00055 34.6 3.5 46 225-278 118-178 (289)
91 4esj_A Type-2 restriction enzy 43.0 8 0.00027 36.3 1.3 15 261-275 34-48 (257)
92 4gop_C Putative uncharacterize 42.4 15 0.00051 36.8 3.3 44 244-287 306-359 (444)
93 2ayj_A 50S ribosomal protein L 41.5 16 0.00055 26.7 2.5 41 232-273 4-45 (56)
94 1m2k_A Silent information regu 41.3 22 0.00074 33.0 4.1 41 230-278 111-157 (249)
95 1vq8_1 50S ribosomal protein L 41.0 9.2 0.00032 28.1 1.1 28 243-271 15-43 (57)
96 3cw2_K Translation initiation 39.6 4.1 0.00014 35.1 -1.1 25 233-257 111-135 (139)
97 2ftc_N Mitochondrial ribosomal 38.0 29 0.00098 27.9 3.7 22 261-284 63-84 (96)
98 3d30_A YOAJ, expansin like pro 37.9 13 0.00044 33.8 1.9 24 248-271 51-80 (208)
99 2vl6_A SSO MCM N-TER, minichro 37.7 17 0.00057 33.9 2.7 44 226-270 116-177 (268)
100 2nn6_I 3'-5' exoribonuclease C 37.7 8.7 0.0003 35.0 0.7 32 248-279 171-203 (209)
101 2fiy_A Protein FDHE homolog; F 37.4 18 0.00061 35.0 2.9 42 32-75 20-61 (309)
102 1x6m_A GFA, glutathione-depend 37.3 10 0.00034 34.1 1.0 17 258-274 95-111 (196)
103 1vk6_A NADH pyrophosphatase; 1 37.2 9.6 0.00033 35.9 0.9 13 260-272 106-118 (269)
104 3u31_A SIR2A, transcriptional 37.2 24 0.00082 33.7 3.7 40 230-278 144-196 (290)
105 3j21_e 50S ribosomal protein L 36.8 13 0.00044 27.8 1.3 25 247-271 18-43 (62)
106 4a18_A RPL37, ribosomal protei 36.7 12 0.00043 30.0 1.3 29 241-270 12-40 (94)
107 3iz5_l 60S ribosomal protein L 35.7 13 0.00044 29.9 1.2 29 242-271 13-41 (94)
108 3f9v_A Minichromosome maintena 35.5 14 0.00047 38.7 1.8 41 230-270 113-171 (595)
109 3ga8_A HTH-type transcriptiona 34.4 15 0.0005 27.9 1.4 36 237-272 12-47 (78)
110 1dl6_A Transcription factor II 34.4 12 0.0004 27.3 0.8 8 261-268 30-37 (58)
111 1qyp_A RNA polymerase II; tran 33.0 27 0.00094 24.8 2.6 20 260-279 14-33 (57)
112 3iz5_r 60S ribosomal protein L 31.8 20 0.00068 29.4 1.9 18 261-278 9-28 (105)
113 3v2d_5 50S ribosomal protein L 31.4 20 0.00069 26.4 1.7 21 246-268 30-50 (60)
114 2jne_A Hypothetical protein YF 31.3 23 0.00079 28.8 2.1 24 247-272 49-72 (101)
115 1yc5_A NAD-dependent deacetyla 31.2 25 0.00085 32.4 2.7 41 230-278 111-160 (246)
116 1l8d_A DNA double-strand break 30.8 13 0.00044 29.9 0.5 9 262-270 48-56 (112)
117 2dok_A Telomerase-binding prot 30.5 32 0.0011 30.1 3.2 28 209-236 151-178 (186)
118 2hf1_A Tetraacyldisaccharide-1 30.2 15 0.00051 27.7 0.8 10 261-270 8-17 (68)
119 1l1o_C Replication protein A 7 30.1 45 0.0015 29.3 4.1 44 244-287 41-94 (181)
120 3glr_A NAD-dependent deacetyla 29.5 40 0.0014 32.1 3.9 41 230-278 129-178 (285)
121 2k2d_A Ring finger and CHY zin 28.8 25 0.00085 27.2 1.9 24 247-270 38-64 (79)
122 3i3t_A Ubiquitin carboxyl-term 28.1 52 0.0018 30.6 4.4 35 261-296 226-261 (355)
123 3f2b_A DNA-directed DNA polyme 27.8 26 0.00091 39.3 2.6 25 246-270 502-536 (1041)
124 2jr6_A UPF0434 protein NMA0874 27.3 15 0.00053 27.6 0.4 11 260-270 7-17 (68)
125 2js4_A UPF0434 protein BB2007; 27.0 15 0.00052 27.8 0.3 11 260-270 7-17 (70)
126 2jny_A Uncharacterized BCR; st 26.9 15 0.00053 27.6 0.3 11 260-270 9-19 (67)
127 3p2a_A Thioredoxin 2, putative 26.5 27 0.00093 28.3 1.9 28 246-273 5-37 (148)
128 3r8s_0 50S ribosomal protein L 26.1 24 0.0008 25.6 1.2 24 254-277 20-43 (56)
129 1wff_A Riken cDNA 2810002D23 p 25.3 32 0.0011 27.1 1.9 27 243-270 22-48 (85)
130 2d8v_A Zinc finger FYVE domain 25.2 18 0.00061 27.4 0.4 18 246-269 19-36 (67)
131 1chl_A Chlorotoxin; neurotoxin 25.2 7 0.00024 26.0 -1.6 19 248-267 1-19 (36)
132 3hz7_A Uncharacterized protein 24.6 82 0.0028 24.3 4.2 34 20-53 17-53 (87)
133 1weo_A Cellulose synthase, cat 24.2 12 0.00041 30.0 -0.8 23 248-270 45-67 (93)
134 2hjh_A NAD-dependent histone d 24.0 36 0.0012 33.2 2.5 39 225-269 143-193 (354)
135 2pk7_A Uncharacterized protein 24.0 17 0.00058 27.5 0.1 11 260-270 7-17 (69)
136 2zkr_2 60S ribosomal protein L 23.9 29 0.001 28.1 1.5 24 248-271 18-41 (97)
137 1vdd_A Recombination protein R 21.5 14 0.00049 34.3 -0.9 41 238-281 46-87 (228)
138 2k4x_A 30S ribosomal protein S 20.9 26 0.00088 25.3 0.5 36 232-270 7-45 (55)
139 2fe1_A Conserved hypothetical 20.4 2.1E+02 0.0073 23.6 6.4 66 4-75 56-138 (156)
140 1tie_A Erythrina trypsin inhib 20.2 96 0.0033 27.2 4.2 30 261-291 129-158 (172)
141 2xzf_A Formamidopyrimidine-DNA 20.1 26 0.0009 32.9 0.5 21 32-53 25-46 (271)
No 1
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=100.00 E-value=2.3e-41 Score=268.81 Aligned_cols=77 Identities=40% Similarity=0.773 Sum_probs=76.0
Q ss_pred ccCccccceeeeEEEEccCccccccccCcccCCCCCccceeEEEEEEcCCCcEEEeeccCCc-cccCCcccccCCCCC
Q psy12603 233 ALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRP-LTARGKKFSLPTFKG 309 (391)
Q Consensus 233 s~~G~~Ik~~r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvsvd~~G~~~~hl~~n~~-~n~RG~~ySlPkPkG 309 (391)
|+||++|+++|+|+|||||||++|++|+|+|||+|||+||+|||||||+||++++||++||| ||+||++||||+|+|
T Consensus 2 s~~G~~Ir~~k~~iLrC~aCf~~t~~~~k~FCp~CGn~TL~Rvsvsvd~~G~~~~hl~~n~~~~n~RG~~ySlPkpkG 79 (79)
T 2con_A 2 SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRYSSGPSSG 79 (79)
T ss_dssp CCCCCCCCCCCCEEEECSSSCCEESCSSCCSCSSSCCSCCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCCceEeeeeeeeeeEecccceECCCcccccccccCcccceEEEEEECCCCcEEEeccCCccccccCCCCccCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999 999999999999997
No 2
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=99.96 E-value=4e-30 Score=230.78 Aligned_cols=132 Identities=31% Similarity=0.530 Sum_probs=120.6
Q ss_pred ceeechhHHHhhcCHHHHHHHhhC-CC-ceEEecCChhhHHHHHHHHHHhCCCCCCChhhHHHHHHhhhhhhhccCcccc
Q psy12603 5 NVITIPEVVNEVTSKRQIRRLVVL-PY-DLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQHIGVDSI 82 (391)
Q Consensus 5 ~~yT~p~Vi~EIrD~~sR~~L~~L-p~-~L~vreP~~esi~~V~~FAkkTGD~~sLS~~DI~ViALtyeLe~E~~G~~~L 82 (391)
.+||++.|+.||++.++|..|..| .+ .|++++|+++++..|.+||++||||..||.+|++|||||++|..
T Consensus 27 ~l~~p~~V~~El~~~~~r~~l~~l~~~~~l~v~~~~~~~i~~v~~~~~~~gd~~~Ls~~D~~lIaLA~~l~~-------- 98 (165)
T 2lcq_A 27 EGYTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKADIEVLALAYELKG-------- 98 (165)
T ss_dssp CEEECHHHHTTCCSSHHHHHHHHHHHTTSEEECCCCHHHHHHHHHHHHHHSCSSCSCHHHHHHHHHHHHHTC--------
T ss_pred CEEEChhhHHhhcCHHHHHHHHHhhccCCEEEecCCHHHHHHHHHHHHHcCCcccCCHHHHHHHHhHHHhCC--------
Confidence 689999999999999999888876 34 49999999999999999999999999999999999999999832
Q ss_pred ccCCcccccccccCCCccchhccccccCCCCCCccCCCCCccccccccccccccccccchhhccccchhhhccCCccccc
Q psy12603 83 NTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQ 162 (391)
Q Consensus 83 r~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 162 (391)
T Consensus 99 -------------------------------------------------------------------------------- 98 (165)
T 2lcq_A 99 -------------------------------------------------------------------------------- 98 (165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCCCCCCCCccCcccHHHHHhhhhcccccCCCceEEEecCcHHHHHHHHHhCCceeccCcccccee
Q psy12603 163 KIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNVVALDGRLIREL 242 (391)
Q Consensus 163 ~~~~~~~~~~~~~~~~~ddd~~~WITp~Ni~~~~~~~~~~~~~~~~~~Vac~TtDfAMQNVllqmGL~l~s~~G~~Ik~~ 242 (391)
.++|+||++|||+.++||+++++. ..|+++
T Consensus 99 -------------------------------------------------~lvT~D~~l~~vA~~~Gv~v~~~~-~~i~~~ 128 (165)
T 2lcq_A 99 -------------------------------------------------EIFSDDYNVQNIASLLGLRFRTLK-RGIKKV 128 (165)
T ss_dssp -------------------------------------------------CEECCCHHHHHHHHHTTCCEECCS-CCCSSC
T ss_pred -------------------------------------------------eEEcCcHHHHHHHHHCCCeEEchh-hhcccc
Confidence 189999999999999999999998 899999
Q ss_pred eeEEEEccCccccccccC-cccCCCCCccceeEE
Q psy12603 243 RTFILRCYACYKTTSIMT-KVFCPKCGYKTLKRV 275 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~-k~FCP~CGn~TL~Rv 275 (391)
++|.|||++|++++..+. ..|||.||++ ++|+
T Consensus 129 ~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~-~~~~ 161 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTLPPGGVCPDCGSK-VKLI 161 (165)
T ss_dssp CCCCEEESSSCCEESSCCGGGBCTTTCCB-EEEC
T ss_pred ccEEEECCCCCCcccCCCCCCcCCCCCCc-ceeC
Confidence 999999999999998554 6799999999 6654
No 3
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=95.96 E-value=0.014 Score=50.48 Aligned_cols=52 Identities=25% Similarity=0.213 Sum_probs=37.5
Q ss_pred CceeechhHHHhhcCHH----------HHHHHhhCC-----CceEEecCChhhHHHHHHHHHHhCCCCCCChhhHHHHHH
Q psy12603 4 DNVITIPEVVNEVTSKR----------QIRRLVVLP-----YDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIAL 68 (391)
Q Consensus 4 ~~~yT~p~Vi~EIrD~~----------sR~~L~~Lp-----~~L~vreP~~esi~~V~~FAkkTGD~~sLS~~DI~ViAL 68 (391)
..++.+..|+.|+..-+ .|+-|+.|- +.+++-+ ||+..+.+|-+|++|
T Consensus 31 g~liIP~~Vl~ELq~lA~s~d~~~r~rGr~gL~iL~~L~~~~~vei~~-----------------~~~~~~~vD~~ll~l 93 (134)
T 3ix7_A 31 GPLWVPHFVLKELQHFADSQDPLRRAKGRRGLETLERLREAAPLEVLE-----------------TTPKGESVDEKLLFL 93 (134)
T ss_dssp SCEEEEHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHSCEEEEC-----------------CCCSCSSHHHHHHHH
T ss_pred CceecHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCEEEeC-----------------CCCCcccHHHHHHHH
Confidence 47899999999998644 445565441 1144443 467889999999999
Q ss_pred hhhh
Q psy12603 69 TYEL 72 (391)
Q Consensus 69 tyeL 72 (391)
|.++
T Consensus 94 A~~~ 97 (134)
T 3ix7_A 94 ARDL 97 (134)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9997
No 4
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=95.68 E-value=0.0039 Score=54.36 Aligned_cols=41 Identities=15% Similarity=0.364 Sum_probs=31.7
Q ss_pred eeEEEEccCccccccccCcccCCCCCccceeEEEEEEcCCCcE
Q psy12603 243 RTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQ 285 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvsvd~~G~~ 285 (391)
|-.+.||.+|.++.- +.+.+||+||...+.-+.++ ...|++
T Consensus 44 rL~~~rC~~CG~~~~-PPr~~Cp~C~s~~~~~ve~s-~G~GtV 84 (145)
T 3irb_A 44 KIIGSKCSKCGRIFV-PARSYCEHCFVKIENYVEIN-KDEAYV 84 (145)
T ss_dssp CCEEEECTTTCCEEE-SCCSEETTTTEECCEEEECC-GGGCEE
T ss_pred eEEEEEeCCCCcEEc-CchhhCcCCCCCceeeeeec-CCceEE
Confidence 567889999999886 56899999999988777653 124554
No 5
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=93.89 E-value=0.022 Score=42.59 Aligned_cols=28 Identities=39% Similarity=0.679 Sum_probs=22.1
Q ss_pred eeEEEEccCccccccccCcccCCCCCcccee
Q psy12603 243 RTFILRCYACYKTTSIMTKVFCPKCGYKTLK 273 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~ 273 (391)
+.-+-+|.+|...|- +..||.||.+|..
T Consensus 3 ks~mr~C~~CgvYTL---k~~CP~CG~~T~~ 30 (60)
T 2apo_B 3 EMRMKKCPKCGLYTL---KEICPKCGEKTVI 30 (60)
T ss_dssp CCCCEECTTTCCEES---SSBCSSSCSBCBC
T ss_pred hhhceeCCCCCCEec---cccCcCCCCcCCC
Confidence 344678999988775 7889999998653
No 6
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=93.80 E-value=0.025 Score=42.34 Aligned_cols=28 Identities=43% Similarity=0.647 Sum_probs=21.4
Q ss_pred eeEEEEccCccccccccCcccCCCCCcccee
Q psy12603 243 RTFILRCYACYKTTSIMTKVFCPKCGYKTLK 273 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~ 273 (391)
++-|.+|.+|...|- +..||.||.+|..
T Consensus 2 ks~mr~C~~Cg~YTL---k~~CP~CG~~t~~ 29 (60)
T 2aus_D 2 RFRIRKCPKCGRYTL---KETCPVCGEKTKV 29 (60)
T ss_dssp --CCEECTTTCCEES---SSBCTTTCSBCEE
T ss_pred CccceECCCCCCEEc---cccCcCCCCccCC
Confidence 344678999988775 7889999999753
No 7
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=93.52 E-value=0.052 Score=45.45 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.0
Q ss_pred eEEEEccCccccccccCcc--cCCCCCcccee
Q psy12603 244 TFILRCYACYKTTSIMTKV--FCPKCGYKTLK 273 (391)
Q Consensus 244 ~wvlRC~aCf~~t~~~~k~--FCP~CGn~TL~ 273 (391)
.=.++|..|...+...... -||.||++.++
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSKNVI 102 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSCCCE
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCCCcE
Confidence 3478999999987755444 49999999554
No 8
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=93.05 E-value=0.043 Score=42.26 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=25.5
Q ss_pred eeEEEEccCccccc--cccCcccCCCCCccceeE
Q psy12603 243 RTFILRCYACYKTT--SIMTKVFCPKCGYKTLKR 274 (391)
Q Consensus 243 r~wvlRC~aCf~~t--~~~~k~FCP~CGn~TL~R 274 (391)
..+.++|..|...+ .+....+||.||+..|-|
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLK 58 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeEe
Confidence 46789999999883 345678999999987755
No 9
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=92.93 E-value=0.037 Score=48.25 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=32.3
Q ss_pred eeeEEEEccCccccccccCcccCCCCCccceeEEEEEEcCCCcE
Q psy12603 242 LRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQ 285 (391)
Q Consensus 242 ~r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvsvd~~G~~ 285 (391)
-+-.+.||.+|.++.. +.+.+||+||...+.-+.++ +..|++
T Consensus 43 g~L~~~rC~~CG~~~f-PPr~~Cp~C~s~~~e~v~ls-~g~GtV 84 (145)
T 2gnr_A 43 NKIIGSKCSKCGRIFV-PARSYCEHCFVKIENYVEIN-KDEAYV 84 (145)
T ss_dssp TCCEEEECTTTCCEEE-SCCSEETTTTEECCEEEECC-GGGCEE
T ss_pred CEEEEEEECCCCcEEe-CCCCCCCCCCCCccEEEEcc-CCcEEE
Confidence 3567899999999876 56899999999988776652 145664
No 10
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=92.27 E-value=0.16 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=22.3
Q ss_pred EecCcHHHHHHHHHhCCceeccCc
Q psy12603 213 CVTTDFAMQNVLKQMGLNVVALDG 236 (391)
Q Consensus 213 c~TtDfAMQNVllqmGL~l~s~~G 236 (391)
++|+||.+++|+..+|+.++.+..
T Consensus 109 lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 109 LLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp EEESCHHHHHHHHHTTCCEEECCC
T ss_pred EEcCCHHHHHHHHHcCCEEEEecc
Confidence 799999999999999999998854
No 11
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=90.08 E-value=0.084 Score=38.65 Aligned_cols=30 Identities=30% Similarity=0.723 Sum_probs=22.0
Q ss_pred EEEEccCcc----cccccc--------CcccCCCCCccceeE
Q psy12603 245 FILRCYACY----KTTSIM--------TKVFCPKCGYKTLKR 274 (391)
Q Consensus 245 wvlRC~aCf----~~t~~~--------~k~FCP~CGn~TL~R 274 (391)
-.|.|.+|. .++++- -+.|||.|+..||.|
T Consensus 9 I~L~ct~c~~~nY~T~KNkrn~p~rLelkKycp~c~kHtlhk 50 (54)
T 3v2d_6 9 LLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHR 50 (54)
T ss_dssp EEEEETTTCCEEEEEEEETTTSCSCCEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCccEeEeecCCCCCcccEEeeeCCCCCCEeeEE
Confidence 479999994 222221 378999999999876
No 12
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=89.45 E-value=0.11 Score=37.42 Aligned_cols=30 Identities=23% Similarity=0.157 Sum_probs=21.7
Q ss_pred EEEEccCcc----ccccc-------c-CcccCCCCCccceeE
Q psy12603 245 FILRCYACY----KTTSI-------M-TKVFCPKCGYKTLKR 274 (391)
Q Consensus 245 wvlRC~aCf----~~t~~-------~-~k~FCP~CGn~TL~R 274 (391)
-.|.|.+|. .++++ + -+.|||.|+..||.|
T Consensus 6 I~L~ct~c~~~nY~t~kn~~~~~~rLelkKycp~~~khtlhk 47 (50)
T 3r8s_1 6 IKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYK 47 (50)
T ss_dssp EEEEESSSSCCEEEEEECGGGCCSCCCEEEEETTTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEccCCCCCccceEeeeCcCCCCEeeEE
Confidence 469999993 33331 1 378999999999875
No 13
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=89.09 E-value=0.17 Score=37.15 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=22.0
Q ss_pred eEEEEccCcc----cccccc--------CcccCCCCCccceeE
Q psy12603 244 TFILRCYACY----KTTSIM--------TKVFCPKCGYKTLKR 274 (391)
Q Consensus 244 ~wvlRC~aCf----~~t~~~--------~k~FCP~CGn~TL~R 274 (391)
.-.|.|.+|. .++++. -+.|||.|...||.|
T Consensus 9 ~I~L~ct~c~~~~Y~t~Knrrn~~~rLelkKycp~~~kHtlhk 51 (55)
T 2zjr_1 9 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFR 51 (55)
T ss_pred EEEEEEcccCCeeEeEcccCCCCCcceEEEccCCCCCCEEeEE
Confidence 4479999993 233322 266999999999876
No 14
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=88.88 E-value=0.19 Score=38.22 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=12.3
Q ss_pred cccCCCCCccceeE
Q psy12603 261 KVFCPKCGYKTLKR 274 (391)
Q Consensus 261 k~FCP~CGn~TL~R 274 (391)
+.|||.|...||.|
T Consensus 49 kKycp~c~kHtlhk 62 (66)
T 3bbo_3 49 RKFCPYCYKHTIHG 62 (66)
T ss_dssp CCCCCSSSSCCCCC
T ss_pred EccCCCCCCeeeEE
Confidence 67999999999865
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=88.35 E-value=0.13 Score=48.33 Aligned_cols=34 Identities=21% Similarity=0.551 Sum_probs=23.4
Q ss_pred hCCceeccCccccceeeeEEEEccCcccccccc---------CcccCCCCCcc
Q psy12603 227 MGLNVVALDGRLIRELRTFILRCYACYKTTSIM---------TKVFCPKCGYK 270 (391)
Q Consensus 227 mGL~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~~---------~k~FCP~CGn~ 270 (391)
-|+-|+.+.|. +|.|||-.-+.. .-.|||+||-=
T Consensus 189 ~g~avv~v~~~----------~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRI 231 (256)
T 3na7_A 189 KNTSIVTIKKQ----------ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRI 231 (256)
T ss_dssp GGGSEEECBTT----------BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCE
T ss_pred CCceEEEeeCC----------ccCCCCeeeCHHHHHHHHCCCCEEECCCCCee
Confidence 46666666543 899999755421 35899999953
No 16
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=88.20 E-value=0.21 Score=35.46 Aligned_cols=30 Identities=43% Similarity=0.840 Sum_probs=22.7
Q ss_pred EEEccCcccccccc-----CcccCCCCCccceeEE
Q psy12603 246 ILRCYACYKTTSIM-----TKVFCPKCGYKTLKRV 275 (391)
Q Consensus 246 vlRC~aCf~~t~~~-----~k~FCP~CGn~TL~Rv 275 (391)
+++|--|.+++... +-.-||.||...+.||
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 57899999987743 5678999999877665
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=87.70 E-value=0.34 Score=41.77 Aligned_cols=31 Identities=23% Similarity=0.640 Sum_probs=22.6
Q ss_pred eeEEEEccCccccccccC----------------------cccCCCCCcccee
Q psy12603 243 RTFILRCYACYKTTSIMT----------------------KVFCPKCGYKTLK 273 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~----------------------k~FCP~CGn~TL~ 273 (391)
..=..+|..|..++.... -.-||.||++-+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE 119 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE
Confidence 344789999998876433 3459999998654
No 18
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=86.90 E-value=0.27 Score=35.62 Aligned_cols=30 Identities=13% Similarity=-0.084 Sum_probs=20.9
Q ss_pred EEEEccCccc----ccccc------CcccCCCCCccceeE
Q psy12603 245 FILRCYACYK----TTSIM------TKVFCPKCGYKTLKR 274 (391)
Q Consensus 245 wvlRC~aCf~----~t~~~------~k~FCP~CGn~TL~R 274 (391)
-.|.|.+|.. ++++- -+.|||.|+..||.|
T Consensus 10 i~L~ct~c~~~~Y~t~Knr~~~rLelkKycp~~~khtlhk 49 (52)
T 2ftc_P 10 VRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQRVLFV 49 (52)
T ss_pred EEEEEecCCCeeEEEecCCCCceeEEEccCCCCCceEeEE
Confidence 4689999832 22221 366999999999875
No 19
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=86.00 E-value=0.31 Score=38.52 Aligned_cols=31 Identities=19% Similarity=0.079 Sum_probs=22.2
Q ss_pred eEEEEccCcc----cccccc--------CcccCCCCCccceeE
Q psy12603 244 TFILRCYACY----KTTSIM--------TKVFCPKCGYKTLKR 274 (391)
Q Consensus 244 ~wvlRC~aCf----~~t~~~--------~k~FCP~CGn~TL~R 274 (391)
.-.|.|.+|- .++++- -+.|||.|...||.|
T Consensus 36 ~I~L~Ct~ct~~nY~T~KNrrn~peRLELkKYcP~crKHtlHk 78 (82)
T 1nkw_1 36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFR 78 (82)
T ss_pred EEEEEEecCCCeeEEEecCCCCCCcceEEEccCCCCCCeeeEE
Confidence 4479999993 333322 267999999999876
No 20
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=83.96 E-value=0.37 Score=35.18 Aligned_cols=11 Identities=45% Similarity=1.250 Sum_probs=7.9
Q ss_pred cccCCCCCccc
Q psy12603 261 KVFCPKCGYKT 271 (391)
Q Consensus 261 k~FCP~CGn~T 271 (391)
..|||+||+-.
T Consensus 18 ~~fCPkCG~~~ 28 (55)
T 2k4x_A 18 HRFCPRCGPGV 28 (55)
T ss_dssp SCCCTTTTTTC
T ss_pred cccCcCCCCce
Confidence 47888888754
No 21
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=81.52 E-value=0.61 Score=35.09 Aligned_cols=31 Identities=23% Similarity=0.622 Sum_probs=23.9
Q ss_pred EEEEccCcccccccc--CcccCCCCCccceeEE
Q psy12603 245 FILRCYACYKTTSIM--TKVFCPKCGYKTLKRV 275 (391)
Q Consensus 245 wvlRC~aCf~~t~~~--~k~FCP~CGn~TL~Rv 275 (391)
-.|+|-.|......- ...-||.||+.+|.|.
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBCC
T ss_pred eEEECCCCCCeeecCCCCceECCCCCcEEEEEe
Confidence 368999998776533 4688999999988653
No 22
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=81.23 E-value=0.79 Score=40.74 Aligned_cols=26 Identities=31% Similarity=0.731 Sum_probs=19.8
Q ss_pred eeEEEEccCccccccccCcccCCCCCcc
Q psy12603 243 RTFILRCYACYKTTSIMTKVFCPKCGYK 270 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~k~FCP~CGn~ 270 (391)
..|+ |.-|..++..-.-..||.||.+
T Consensus 137 ~~~~--C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYI--CPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp CEEE--CTTTCCEEESCCCSBCTTTCCB
T ss_pred CeeE--eCCCCCeeCCCCCCCCCCCCCC
Confidence 4565 9999998764334589999976
No 23
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=79.15 E-value=0.5 Score=31.54 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=20.0
Q ss_pred ccCccccceeeeEEEEccCcccccc
Q psy12603 233 ALDGRLIRELRTFILRCYACYKTTS 257 (391)
Q Consensus 233 s~~G~~Ik~~r~wvlRC~aCf~~t~ 257 (391)
+++...+++-+.|.|+|.||....+
T Consensus 8 ~peT~l~~~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 8 KPDTKIIKEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp SCEEEEEEETTEEEEEEETTTEEEE
T ss_pred CCCcEEEEeCCcEEEEhhcCCCccc
Confidence 4566667777999999999998765
No 24
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.70 E-value=0.77 Score=32.84 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=10.4
Q ss_pred CcccCCCCCccce
Q psy12603 260 TKVFCPKCGYKTL 272 (391)
Q Consensus 260 ~k~FCP~CGn~TL 272 (391)
.+.|||+||...+
T Consensus 18 ~~k~CP~CG~~~f 30 (50)
T 3j20_Y 18 KNKFCPRCGPGVF 30 (50)
T ss_dssp SSEECSSSCSSCE
T ss_pred ecccCCCCCCceE
Confidence 4689999998754
No 25
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=76.93 E-value=1.4 Score=34.14 Aligned_cols=20 Identities=45% Similarity=0.956 Sum_probs=18.0
Q ss_pred CcccCCCCCccceeEEEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsvsv 279 (391)
.+.+||.||...++|+++-+
T Consensus 26 ~ky~C~fCgk~~vkR~a~GI 45 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSI 45 (73)
T ss_pred cCccCCCCCCceeEEEEeEE
Confidence 58999999999999999865
No 26
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=75.33 E-value=1.4 Score=36.41 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=26.9
Q ss_pred eeeeEEEEccCcccccc-ccC-cccCCCCCccceeEE
Q psy12603 241 ELRTFILRCYACYKTTS-IMT-KVFCPKCGYKTLKRV 275 (391)
Q Consensus 241 ~~r~wvlRC~aCf~~t~-~~~-k~FCP~CGn~TL~Rv 275 (391)
++.-+-.+|-.|..++. .+. ...||.|++..+..-
T Consensus 62 ~L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFKAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp EEEECCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCCC
T ss_pred EEEEECcChhhCcCeecccCCCCCCCcCCCCCccCCc
Confidence 67888999999998882 232 378999999866543
No 27
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=73.95 E-value=0.96 Score=36.49 Aligned_cols=20 Identities=45% Similarity=0.815 Sum_probs=17.4
Q ss_pred CcccCCCCCccceeEEEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsvsv 279 (391)
.+.+||.||...++|+++-+
T Consensus 35 ~ky~CpfCgk~~vkR~a~GI 54 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKRKAVGI 54 (92)
T ss_dssp SCBCCTTTCSSCBEEEETTE
T ss_pred ccccCcccCCCeeEecCcce
Confidence 58899999999999988644
No 28
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.79 E-value=1 Score=35.64 Aligned_cols=19 Identities=42% Similarity=0.891 Sum_probs=16.8
Q ss_pred CcccCCCCCccceeEEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsvs 278 (391)
.+..||.||...++|+++-
T Consensus 34 ~ky~CpfCGk~~vkR~a~G 52 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTG 52 (83)
T ss_dssp SCBCCSSSCSSCEEEEETT
T ss_pred cccCCCCCCCceeEecCcC
Confidence 5899999999999998864
No 29
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=73.03 E-value=1 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=16.6
Q ss_pred CcccCCCCCccceeEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAV 277 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsv 277 (391)
.+.+||.||...++|+++
T Consensus 59 akytCPfCGk~~vKR~av 76 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGT 76 (116)
T ss_dssp SCEECSSSCCEEEEEEET
T ss_pred cCCcCCCCCCceeEecCc
Confidence 689999999999999996
No 30
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=72.14 E-value=1.5 Score=34.63 Aligned_cols=31 Identities=35% Similarity=0.694 Sum_probs=23.2
Q ss_pred EEEccCccccccccCcccCCCCCccc--eeEE-EEE
Q psy12603 246 ILRCYACYKTTSIMTKVFCPKCGYKT--LKRV-AVS 278 (391)
Q Consensus 246 vlRC~aCf~~t~~~~k~FCP~CGn~T--L~Rv-svs 278 (391)
...|-+|.+-+.... |||.||.+. |+.+ +++
T Consensus 18 ~~~C~~C~~~~~~~a--fCPeCgq~Le~lkACGA~~ 51 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA--LCPDCRQPLQVLKACGAVD 51 (81)
T ss_dssp EEECTTTCCEEEEEE--ECSSSCSCCCEEEETTEEE
T ss_pred ceECccccccCCCcc--cCcchhhHHHHHHhcCCcC
Confidence 456999999877554 999999996 5555 443
No 31
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=71.45 E-value=1.2 Score=35.95 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=17.4
Q ss_pred CcccCCCCCccceeEEEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsvsv 279 (391)
.+.+||.||...++|+++-+
T Consensus 35 ~ky~CpfCgk~~vkR~a~GI 54 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGI 54 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTE
T ss_pred cCCcCCCCCCceeeecccce
Confidence 58999999999999998644
No 32
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=68.90 E-value=3 Score=37.46 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=18.7
Q ss_pred EEEccCccccccc--cCcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSI--MTKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~--~~k~FCP~CGn~ 270 (391)
+++|.-|..++.. .+ ..||.||.+
T Consensus 155 ~~~C~~CG~~~~g~~~p-~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAP-ELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECC-SBCTTTCCB
T ss_pred eEEECCCCCEeeCCCCC-CCCCCCcCC
Confidence 5779999999742 23 389999986
No 33
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=68.32 E-value=3.2 Score=37.02 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=28.5
Q ss_pred eEEEEccCccc-cc-cccCcccCCCCCcc----ceeEEEEEE-cCCCcEEE
Q psy12603 244 TFILRCYACYK-TT-SIMTKVFCPKCGYK----TLKRVAVSV-DEQGKQKI 287 (391)
Q Consensus 244 ~wvlRC~aCf~-~t-~~~~k~FCP~CGn~----TL~Rvsvsv-d~~G~~~~ 287 (391)
-|-.-|..|++ ++ .....-+|++||.. -...+++.| |..|.+.+
T Consensus 40 ~~Y~ACp~CnKKV~~~~~g~~~CekC~~~~~~~~RYil~~~i~D~TG~~wv 90 (172)
T 3u50_C 40 LYYYRCTCQGKSVLKYHGDSFFCESCQQFINPQVHLMLRAFVQDSTGTIPV 90 (172)
T ss_dssp CEEEECTTSCCCEEEETTTEEEETTTTEECCCEEEECEEEEEEETTEEEEE
T ss_pred EEehhchhhCCEeeeCCCCeEECCCCCCCCCceEEEEEEEEEEeCCCCEEE
Confidence 35667999995 44 23457789999974 334456665 44577654
No 34
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=67.90 E-value=1.3 Score=36.46 Aligned_cols=20 Identities=45% Similarity=0.788 Sum_probs=17.2
Q ss_pred CcccCCCCCccceeEEEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsvsv 279 (391)
.+.+||.||...++|+++-|
T Consensus 35 aky~CpfCgk~~vKR~a~GI 54 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRAAVGI 54 (103)
T ss_dssp SCEECTTTCCEEEEEEETTE
T ss_pred cCCCCCCCCCceeeecCcce
Confidence 58899999999999988643
No 35
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=66.98 E-value=3.2 Score=36.60 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=19.8
Q ss_pred eeEEEEccCccccc----------cccCcccCCCCCcc
Q psy12603 243 RTFILRCYACYKTT----------SIMTKVFCPKCGYK 270 (391)
Q Consensus 243 r~wvlRC~aCf~~t----------~~~~k~FCP~CGn~ 270 (391)
.+|+++|..|.... ++.....||.||..
T Consensus 75 ~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 112 (166)
T 3ir9_A 75 ERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS 112 (166)
T ss_dssp EEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB
T ss_pred eEEEEECCCCCceeEEEeecChhhcccccccccccCcc
Confidence 46899999998432 11234579999987
No 36
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=66.95 E-value=6.8 Score=34.06 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=30.2
Q ss_pred EccCccccccc-------cCcccCCCCCcc----ceeEEEEEEcCCCcEEEeeccCCccccCCcccccC
Q psy12603 248 RCYACYKTTSI-------MTKVFCPKCGYK----TLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLP 305 (391)
Q Consensus 248 RC~aCf~~t~~-------~~k~FCP~CGn~----TL~Rvsvsvd~~G~~~~hl~~n~~~n~RG~~ySlP 305 (391)
.|..|...... ..+.+|+.||-. ...-|.+.+-.+|.+-+....+.. .. ..|.+|
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~ii~~~~~vLL~~r~~~~--~~-g~w~lP 70 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNPKVIVGCIPEWENKVLLCKRAIAP--YR-GKWTLP 70 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCCEEEEEEEEEETTEEEEEEESSSS--ST-TCEECS
T ss_pred cCchhCCccccccccCCCCcceECCCCCCccCCCCceEEEEEEEeCCEEEEEEccCCC--CC-CeEECc
Confidence 58888866531 246789999832 222344444447765443333322 23 358887
No 37
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=66.51 E-value=2.9 Score=29.40 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=17.8
Q ss_pred EEccCccccccc----------c-CcccCCCCCcc
Q psy12603 247 LRCYACYKTTSI----------M-TKVFCPKCGYK 270 (391)
Q Consensus 247 lRC~aCf~~t~~----------~-~k~FCP~CGn~ 270 (391)
++|..|..++.. . .--.||.||..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 489999999852 1 12379999975
No 38
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=66.43 E-value=2.8 Score=38.05 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=19.4
Q ss_pred EEEccCccccccccCcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIMTKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~~k~FCP~CGn~ 270 (391)
+++|.-|..++....-..||.||.+
T Consensus 171 ~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEESSCCSBCTTTCCB
T ss_pred EEEECCCCCEEcCcCCCCCCCCCCC
Confidence 5679999998754333689999986
No 39
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=66.39 E-value=2.6 Score=32.17 Aligned_cols=22 Identities=32% Similarity=0.689 Sum_probs=18.0
Q ss_pred EEEccCccccccccCcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIMTKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~~k~FCP~CGn~ 270 (391)
-.-|.-|..+. ....||.||+.
T Consensus 11 ~~AC~~C~~~~---~~~~CPnC~s~ 32 (69)
T 1ryq_A 11 EKACRHCHYIT---SEDRCPVCGSR 32 (69)
T ss_dssp CEEETTTCBEE---SSSSCTTTCCC
T ss_pred hhhHHhCCccc---cCCcCCCccCC
Confidence 35688999887 56889999976
No 40
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.81 E-value=2 Score=34.77 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=16.3
Q ss_pred cccCCCCCccceeEEEEE
Q psy12603 261 KVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 261 k~FCP~CGn~TL~Rvsvs 278 (391)
+-|||+|+..|+.+|+-+
T Consensus 8 ~tyC~~C~kHt~HkVt~y 25 (94)
T 3j21_j 8 RTYCPFCKKHTIHKVERV 25 (94)
T ss_dssp EECCTTTTSCEEEEECCC
T ss_pred eecCcCCCCCcceEEEEE
Confidence 679999999999999875
No 41
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=65.56 E-value=1.2 Score=34.40 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=16.5
Q ss_pred CcccCCCCCccceeEEEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsvsv 279 (391)
.+..||.||...++|+++-|
T Consensus 25 ~ky~C~fCgk~~vkR~a~GI 44 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGI 44 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSC
T ss_pred cCccCCCCCCceeEecCCCe
Confidence 58899999999999977543
No 42
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=65.42 E-value=1.8 Score=34.85 Aligned_cols=18 Identities=22% Similarity=0.636 Sum_probs=16.6
Q ss_pred cccCCCCCccceeEEEEE
Q psy12603 261 KVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 261 k~FCP~CGn~TL~Rvsvs 278 (391)
+-|||+|+..|+.+|+-+
T Consensus 8 ~tyCp~C~kHt~HkVtqy 25 (92)
T 1vq8_3 8 NTYCPHCNEHQEHEVEKV 25 (92)
T ss_dssp EEEETTTTEEEEEEEEEC
T ss_pred cccCCCCCCCccEEEEEE
Confidence 679999999999999986
No 43
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.29 E-value=4.7 Score=28.97 Aligned_cols=28 Identities=36% Similarity=0.666 Sum_probs=21.1
Q ss_pred EEEEccCccccccccCcccCCCCCcccee
Q psy12603 245 FILRCYACYKTTSIMTKVFCPKCGYKTLK 273 (391)
Q Consensus 245 wvlRC~aCf~~t~~~~k~FCP~CGn~TL~ 273 (391)
=...|.-|+..-+ ..-..|.+||+..|+
T Consensus 13 ~k~iCpkC~a~~~-~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNP-WGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEEC-TTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCC-CCceecCCCCCcccc
Confidence 4567999998743 457889999998554
No 44
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=63.93 E-value=2.5 Score=32.05 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=18.0
Q ss_pred EEEccCcccccccc----CcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIM----TKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~----~k~FCP~CGn~ 270 (391)
-.+|.+|++++-.- +-..|..||..
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCE
Confidence 35789998876533 56788888864
No 45
>1r8o_B STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=63.81 E-value=7.1 Score=29.86 Aligned_cols=29 Identities=10% Similarity=0.306 Sum_probs=22.0
Q ss_pred cCcccCCCCCccceeEEEEEEcCCCcEEEee
Q psy12603 259 MTKVFCPKCGYKTLKRVAVSVDEQGKQKIHI 289 (391)
Q Consensus 259 ~~k~FCP~CGn~TL~Rvsvsvd~~G~~~~hl 289 (391)
..-.|||.|+- + .-|-+++|++|.-.+-+
T Consensus 29 Yklv~CP~c~~-~-~diGI~~d~~g~rrll~ 57 (71)
T 1r8o_B 29 YKDVYSSSKGR-D-LDDGIEVNKKKEKRLVV 57 (71)
T ss_dssp EEEEEECTTSC-E-EEEEEEECTTSCEEEEE
T ss_pred eEEEECCCCCc-c-cceeEEEeCCCEEEEEE
Confidence 45789999944 3 99999999888765533
No 46
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.64 E-value=2.3 Score=30.30 Aligned_cols=39 Identities=21% Similarity=0.448 Sum_probs=25.0
Q ss_pred CceeccCccccceeeeEEEEccCccc--c-ccccCcccCCCCCcc
Q psy12603 229 LNVVALDGRLIRELRTFILRCYACYK--T-TSIMTKVFCPKCGYK 270 (391)
Q Consensus 229 L~l~s~~G~~Ik~~r~wvlRC~aCf~--~-t~~~~k~FCP~CGn~ 270 (391)
|...-+++-.|.+++.+ |..|.. + .....+..|++||.-
T Consensus 5 l~~y~v~~~kv~~~~k~---CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 5 WKLYEIKDGKVIRKNKF---CPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp CCCCEECSSCEECSSEE---CSSSCSSCEEEECSSEEECSSSCCE
T ss_pred eeEEEEECCEEEEeccc---CCCCCCceEEecCCCeEECCCCCCE
Confidence 34444555468887777 666654 2 233468999999963
No 47
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=63.50 E-value=2.3 Score=35.61 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=11.4
Q ss_pred CcccCCCCCccceeE
Q psy12603 260 TKVFCPKCGYKTLKR 274 (391)
Q Consensus 260 ~k~FCP~CGn~TL~R 274 (391)
.-.|||.|||=+.-+
T Consensus 3 ~~~FCp~CgnlL~~~ 17 (122)
T 1twf_I 3 TFRFCRDCNNMLYPR 17 (122)
T ss_dssp CCCBCSSSCCBCEEE
T ss_pred CCCcccccCccCccc
Confidence 458999999976533
No 48
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=63.48 E-value=5.4 Score=37.58 Aligned_cols=55 Identities=9% Similarity=0.180 Sum_probs=32.1
Q ss_pred EEccCcccccc---ccCcccCCCCCccceeE----EEEEEcCCCcEEEeeccCCccccCCcccccC
Q psy12603 247 LRCYACYKTTS---IMTKVFCPKCGYKTLKR----VAVSVDEQGKQKIHINLKRPLTARGKKFSLP 305 (391)
Q Consensus 247 lRC~aCf~~t~---~~~k~FCP~CGn~TL~R----vsvsvd~~G~~~~hl~~n~~~n~RG~~ySlP 305 (391)
..|..|..-+. ...+..||.||...--+ |.+.|..+|.+-+. ++..+. +..|++|
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~~yp~~~~~viv~v~~~~~vLL~--rr~~~~--~g~w~lP 169 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLA--QHTRHR--NGVHTVL 169 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCEECCCCEEEEEEEEEETTEEEEE--EETTTC--SSCCBCE
T ss_pred CccccCCCcCccCCCceeeeCCCCCCEecCCCCcEEEEEEEeCCEEEEE--EecCCC--CCcEECC
Confidence 46888886653 23578999999864433 23334556655433 332222 3468885
No 49
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=62.20 E-value=2.3 Score=35.35 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=16.5
Q ss_pred cccCCCCCccceeEEEEE
Q psy12603 261 KVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 261 k~FCP~CGn~TL~Rvsvs 278 (391)
+-|||+|+..|+.+|+-+
T Consensus 9 ~tyCpkC~kHt~HkVtqy 26 (109)
T 4a18_C 9 KTYCKKCNSHTNHKVSQY 26 (109)
T ss_dssp EEEETTTTEEEEEEEEEC
T ss_pred eecCcCCCCCcceEEEEe
Confidence 679999999999999976
No 50
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=61.59 E-value=5.3 Score=32.13 Aligned_cols=39 Identities=26% Similarity=0.594 Sum_probs=29.4
Q ss_pred ccceeeeEEEEccCccccc---cccCcccCCCCCccceeEEEEE
Q psy12603 238 LIRELRTFILRCYACYKTT---SIMTKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 238 ~Ik~~r~wvlRC~aCf~~t---~~~~k~FCP~CGn~TL~Rvsvs 278 (391)
.++-+++| .+|. |.+.+ ..++..-|++||+.--.|+++-
T Consensus 41 ~~~a~KRF-FkC~-C~~Rt~sl~r~P~~~C~~Cg~~~wer~~M~ 82 (92)
T 2kwq_A 41 WHNGVKRF-FKCP-CGNRTISLDRLPKKHCSTCGLFKWERVGML 82 (92)
T ss_dssp EEEEECEE-EECT-TSCEEEESSSSCCSCCTTTCSCCCEEECCC
T ss_pred EEeeeEEE-EECC-CCCceeEeeeCCCCCCCCCCCCceEEeecc
Confidence 44555666 6895 98765 4567889999999988888874
No 51
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.04 E-value=2.8 Score=34.63 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=11.3
Q ss_pred cccCCCCCccceeE
Q psy12603 261 KVFCPKCGYKTLKR 274 (391)
Q Consensus 261 k~FCP~CGn~TL~R 274 (391)
-.|||.|||-+.-+
T Consensus 4 m~FCp~Cgn~L~~~ 17 (113)
T 3h0g_I 4 FQYCIECNNMLYPR 17 (113)
T ss_dssp CCCCSSSCCCCEEC
T ss_pred ceeCcCCCCEeeEc
Confidence 38999999986554
No 52
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=60.84 E-value=6 Score=30.15 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=9.9
Q ss_pred ccCCCCCccceeE
Q psy12603 262 VFCPKCGYKTLKR 274 (391)
Q Consensus 262 ~FCP~CGn~TL~R 274 (391)
.-||.||+.+|.+
T Consensus 3 m~Cp~Cg~~~l~~ 15 (78)
T 3ga8_A 3 MKCPVCHQGEMVS 15 (78)
T ss_dssp CBCTTTSSSBEEE
T ss_pred eECCCCCCCeeEe
Confidence 3599999987743
No 53
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=60.29 E-value=3.1 Score=36.27 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.5
Q ss_pred ccCCCCCccceeE
Q psy12603 262 VFCPKCGYKTLKR 274 (391)
Q Consensus 262 ~FCP~CGn~TL~R 274 (391)
.|||.||.++-.+
T Consensus 4 ~~C~~CG~~~~~~ 16 (189)
T 3cng_A 4 KFCSQCGGEVILR 16 (189)
T ss_dssp CBCTTTCCBCEEE
T ss_pred ccCchhCCccccc
Confidence 6999999997543
No 54
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=58.82 E-value=4.3 Score=33.35 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=19.1
Q ss_pred ccCCCCCccceeEEEEEEcCCCcEEEeeccCCccccCCcccccCC
Q psy12603 262 VFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLTARGKKFSLPT 306 (391)
Q Consensus 262 ~FCP~CGn~TL~Rvsvsvd~~G~~~~hl~~n~~~n~RG~~ySlPk 306 (391)
.+||.||..+|..-..+ +.+..+|..+.|+.
T Consensus 3 M~Cp~Cg~~~~~~~~~~--------------~~~~~kg~~~~v~~ 33 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKD--------------IPYTFRGRKTVLKG 33 (133)
T ss_dssp CBCTTTSSSBEEEEEEE--------------EEEEETTEEEEEEE
T ss_pred cCCCcCCCCceeeceEE--------------EEEEECCEEEEECC
Confidence 47999999866332222 12455777777774
No 55
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=58.16 E-value=3.9 Score=32.20 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=15.2
Q ss_pred CcccCCCCCccceeEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAV 277 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsv 277 (391)
.+..||.||...+.|.++
T Consensus 26 ~~y~Cp~CG~~~v~r~at 43 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGT 43 (83)
T ss_dssp SCEECSSSCCEEEEEEET
T ss_pred ccCcCCCCCCcceeccCC
Confidence 478899999988888875
No 56
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=57.77 E-value=2.9 Score=35.73 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=11.3
Q ss_pred CcccCCCCCccceeE
Q psy12603 260 TKVFCPKCGYKTLKR 274 (391)
Q Consensus 260 ~k~FCP~CGn~TL~R 274 (391)
+-.|||.|||=++-+
T Consensus 23 ~~~FCPeCgNmL~pk 37 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPR 37 (133)
T ss_dssp CCCBCTTTCCBCBCC
T ss_pred CCeeCCCCCCEeeEC
Confidence 358999999975443
No 57
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=57.34 E-value=6.1 Score=37.29 Aligned_cols=45 Identities=22% Similarity=0.662 Sum_probs=30.4
Q ss_pred HhCCceeccCccccc------eeeeEEEEccCcccccccc-------CcccCCCCCccc
Q psy12603 226 QMGLNVVALDGRLIR------ELRTFILRCYACYKTTSIM-------TKVFCPKCGYKT 271 (391)
Q Consensus 226 qmGL~l~s~~G~~Ik------~~r~wvlRC~aCf~~t~~~-------~k~FCP~CGn~T 271 (391)
++| .||++.|..|| .+..=.++|..|..+.... .-..||.||+..
T Consensus 109 ~ig-kLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 109 FIG-KFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRS 166 (279)
T ss_dssp GTT-SEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCCC
T ss_pred hCC-CEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCCC
Confidence 455 67788887665 4556668999998654211 124699999864
No 58
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=57.06 E-value=8.2 Score=37.42 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=23.9
Q ss_pred EEEccCccccccccCcccCCCCCccceeEEEEE
Q psy12603 246 ILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 246 vlRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvs 278 (391)
.|.|.-|.+... +.|.-||.|||. .+..+.
T Consensus 208 ~l~Cs~C~t~W~-~~R~~C~~Cg~~--~~l~y~ 237 (309)
T 2fiy_A 208 YLSCSLCACEWH-YVRIKCSHCEES--KHLAYL 237 (309)
T ss_dssp EEEETTTCCEEE-CCTTSCSSSCCC--SCCEEE
T ss_pred EEEeCCCCCEEe-ecCcCCcCCCCC--CCeeEE
Confidence 689999998876 569999999997 444443
No 59
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.72 E-value=4.1 Score=30.60 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=18.4
Q ss_pred EEEccCcccccccc----CcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIM----TKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~----~k~FCP~CGn~ 270 (391)
-.+|.+|++++-.- +...|..||.-
T Consensus 15 ~VkCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred EEECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 35799999876533 57889999864
No 60
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=56.30 E-value=5 Score=31.54 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=17.4
Q ss_pred EEccCccccccccCcccCCCCCccc
Q psy12603 247 LRCYACYKTTSIMTKVFCPKCGYKT 271 (391)
Q Consensus 247 lRC~aCf~~t~~~~k~FCP~CGn~T 271 (391)
.-|.-|..+... ..||.||...
T Consensus 24 rAC~~C~~v~~~---d~CPnCgs~~ 45 (81)
T 3p8b_A 24 KACRHCHYITSE---DRCPVCGSRD 45 (81)
T ss_dssp EEETTTCBEESS---SSCTTTCCCC
T ss_pred HHHhhCCCccCC---CCCCCCCCCc
Confidence 469999998743 4699999965
No 61
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=53.81 E-value=5.3 Score=31.44 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=19.7
Q ss_pred EEEccCcccccccc----CcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIM----TKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~----~k~FCP~CGn~ 270 (391)
-.+|.+|++++-.- +-+.|..||.-
T Consensus 34 ~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 45799999887643 57899999975
No 62
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=53.48 E-value=5.5 Score=36.31 Aligned_cols=23 Identities=30% Similarity=0.803 Sum_probs=17.5
Q ss_pred EEccCccccc--cccCcccCCCCCc
Q psy12603 247 LRCYACYKTT--SIMTKVFCPKCGY 269 (391)
Q Consensus 247 lRC~aCf~~t--~~~~k~FCP~CGn 269 (391)
..|..|.... ......|||.||.
T Consensus 11 ~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 11 PRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCcccccccccccccccc
Confidence 4799999752 2346899999996
No 63
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=53.41 E-value=2.5 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.744 Sum_probs=3.3
Q ss_pred EEEccCcccccccc---CcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIM---TKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~---~k~FCP~CGn~ 270 (391)
+-+|..|..+.... ....||+||+.
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCC
Confidence 67899999765311 13679999985
No 64
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=53.34 E-value=4.1 Score=31.23 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=16.8
Q ss_pred EEEEccCcccccccc---CcccCCCCCcc
Q psy12603 245 FILRCYACYKTTSIM---TKVFCPKCGYK 270 (391)
Q Consensus 245 wvlRC~aCf~~t~~~---~k~FCP~CGn~ 270 (391)
-|.||. |.+..-.. ...-|| ||..
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRT 29 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEE
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCe
Confidence 378999 98775422 356799 9975
No 65
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=53.32 E-value=6.2 Score=39.31 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=24.0
Q ss_pred eeEEEEccCccccccc----cCcccCCCCCccceeEEEEEE
Q psy12603 243 RTFILRCYACYKTTSI----MTKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~----~~k~FCP~CGn~TL~Rvsvsv 279 (391)
-.|++.|+.|...... .....||.||+....==++.+
T Consensus 241 ~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~~~GPlW~ 281 (392)
T 3axs_A 241 FGYIQYCFNCMNREVVTDLYKFKEKCPHCGSKFHIGGPLWI 281 (392)
T ss_dssp EEEEEECTTTCCEEEECCGGGCCSBCTTTCSBCEEEEEEEC
T ss_pred cceEEECCCCCCeEeecCCCCCCCcCCCCCCccceeccccc
Confidence 3789999999754321 135789999986444334443
No 66
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=53.25 E-value=3.5 Score=36.62 Aligned_cols=34 Identities=18% Similarity=0.464 Sum_probs=25.1
Q ss_pred eEEEEccCcccc-ccccCcccCCCCCccceeEEEE
Q psy12603 244 TFILRCYACYKT-TSIMTKVFCPKCGYKTLKRVAV 277 (391)
Q Consensus 244 ~wvlRC~aCf~~-t~~~~k~FCP~CGn~TL~Rvsv 277 (391)
.-.-+|..|... .+.....-||.||+.-.+|||-
T Consensus 138 vv~a~~~~~g~~m~~~~~~~~cp~~g~~e~RKva~ 172 (179)
T 3m7n_A 138 VLRALCSNCKTEMVREGDILKCPECGRVEKRKIST 172 (179)
T ss_dssp EEECBCTTTCCBCEECSSSEECSSSCCEECCCBCT
T ss_pred EEEecccccCCceEECCCEEECCCCCCEEEEeccc
Confidence 344567778764 3444688999999998999873
No 67
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=52.16 E-value=5.2 Score=31.45 Aligned_cols=24 Identities=25% Similarity=0.768 Sum_probs=19.1
Q ss_pred EEccCcccccccc----CcccCCCCCcc
Q psy12603 247 LRCYACYKTTSIM----TKVFCPKCGYK 270 (391)
Q Consensus 247 lRC~aCf~~t~~~----~k~FCP~CGn~ 270 (391)
-+|.+|++++-.- +-+.|..||..
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCE
Confidence 4899999887543 57889999975
No 68
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=51.95 E-value=4.6 Score=34.75 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=31.7
Q ss_pred EEecCcHH---HHHHHHHhCCc-e-----eccCccccceeeeEEEEccCccccccc
Q psy12603 212 SCVTTDFA---MQNVLKQMGLN-V-----VALDGRLIRELRTFILRCYACYKTTSI 258 (391)
Q Consensus 212 ac~TtDfA---MQNVllqmGL~-l-----~s~~G~~Ik~~r~wvlRC~aCf~~t~~ 258 (391)
+++.+-|. +|++|...=-. | -+++...++.-|.|.|+|.||....+.
T Consensus 80 lii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 80 AILQGKFTHFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAKAPL 135 (138)
T ss_dssp EEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCS
T ss_pred EEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCCccc
Confidence 34555553 77777543211 2 267888888889999999999887653
No 69
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=51.54 E-value=8.2 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=18.6
Q ss_pred EEEccCccccccc------------------cCcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSI------------------MTKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~------------------~~k~FCP~CGn~ 270 (391)
.++|..|..++.. +.--.||.||.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4789999999863 122379999986
No 70
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=51.23 E-value=5.9 Score=31.46 Aligned_cols=24 Identities=33% Similarity=0.964 Sum_probs=18.6
Q ss_pred EEccCcccccccc----CcccCCCCCcc
Q psy12603 247 LRCYACYKTTSIM----TKVFCPKCGYK 270 (391)
Q Consensus 247 lRC~aCf~~t~~~----~k~FCP~CGn~ 270 (391)
.+|.+|++++..- +-+.|..||.-
T Consensus 37 VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 37 VKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred EECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 5799999887543 57889999864
No 71
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=51.23 E-value=9.1 Score=27.39 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=18.2
Q ss_pred EEEccCccccccc------------------cCcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSI------------------MTKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~------------------~~k~FCP~CGn~ 270 (391)
.++|..|..++.. +.--.||.||.+
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 3689999999852 122369999975
No 72
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.66 E-value=5.1 Score=29.58 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=17.3
Q ss_pred ccCccccccccCcccCCCCCcc
Q psy12603 249 CYACYKTTSIMTKVFCPKCGYK 270 (391)
Q Consensus 249 C~aCf~~t~~~~k~FCP~CGn~ 270 (391)
|+||.+...+.+..-||+|++.
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~ 39 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNV 39 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCC
T ss_pred ccccCcccCCCccEECCccCcC
Confidence 9999988776655669999874
No 73
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=49.61 E-value=7.8 Score=29.49 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=18.6
Q ss_pred EEEccCccccccc------------------cCcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSI------------------MTKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~------------------~~k~FCP~CGn~ 270 (391)
.++|..|..++.. +.--.||.||.+
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 4789999999862 122379999986
No 74
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=49.57 E-value=8.7 Score=30.16 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=21.2
Q ss_pred ccceeeeEEEEccCccccccc------------------cCcccCCCCCcc
Q psy12603 238 LIRELRTFILRCYACYKTTSI------------------MTKVFCPKCGYK 270 (391)
Q Consensus 238 ~Ik~~r~wvlRC~aCf~~t~~------------------~~k~FCP~CGn~ 270 (391)
++...+ .++|..|..++.. +.--.||.||-+
T Consensus 21 ~~~em~--~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 21 SMNDYK--LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CSSCCC--EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred CCCCcc--eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 444444 4679999999863 122379999986
No 75
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.39 E-value=6.8 Score=34.44 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=31.2
Q ss_pred EEEecCcH---HHHHHHHHhCCc-e-----eccCccccc--eeeeEEEEccCcccccccc
Q psy12603 211 VSCVTTDF---AMQNVLKQMGLN-V-----VALDGRLIR--ELRTFILRCYACYKTTSIM 259 (391)
Q Consensus 211 Vac~TtDf---AMQNVllqmGL~-l-----~s~~G~~Ik--~~r~wvlRC~aCf~~t~~~ 259 (391)
-+++.+.| -+|++|...=-. | -+++...++ +-|.|.|+|.||...++..
T Consensus 80 rlii~G~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 80 RYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLD 139 (157)
T ss_dssp EEEEEBCCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECC
T ss_pred EEEEEeeeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCCccc
Confidence 34555555 466666442111 2 267777775 6789999999999877644
No 76
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=49.36 E-value=10 Score=27.10 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=18.4
Q ss_pred EEEccCcccccccc------------------CcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIM------------------TKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~------------------~k~FCP~CGn~ 270 (391)
.++|..|..++... .--.||.||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 47899999998531 22379999975
No 77
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=48.77 E-value=12 Score=34.93 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=26.6
Q ss_pred ceeccCccccceeeeEEEEccCcccccccc---------CcccCCCCCccceeEEEEE
Q psy12603 230 NVVALDGRLIRELRTFILRCYACYKTTSIM---------TKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 230 ~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~~---------~k~FCP~CGn~TL~Rvsvs 278 (391)
+|+-++|. -+..+|..|.+.+... .--.||.||... .|-.|.
T Consensus 113 ~v~elHG~------~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~-lrP~Vv 163 (253)
T 1ma3_A 113 RVLELHGS------MDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYY-VKPRVV 163 (253)
T ss_dssp SEEETTEE------EEEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSC-EEEEEC
T ss_pred CEEEeCCC------cCeeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCCcc-ccceEE
Confidence 46677774 5567899998865421 124699999732 244443
No 78
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=48.48 E-value=8.7 Score=27.82 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=17.8
Q ss_pred EEccCcccccccc------------------CcccCCCCCcc
Q psy12603 247 LRCYACYKTTSIM------------------TKVFCPKCGYK 270 (391)
Q Consensus 247 lRC~aCf~~t~~~------------------~k~FCP~CGn~ 270 (391)
++|..|.-++..- .--.||.||..
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 5899999988531 12269999975
No 79
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=48.35 E-value=4.3 Score=41.25 Aligned_cols=30 Identities=3% Similarity=0.010 Sum_probs=3.8
Q ss_pred eeeeEEEEccCccccc----cc-------cCcccCCCCCcc
Q psy12603 241 ELRTFILRCYACYKTT----SI-------MTKVFCPKCGYK 270 (391)
Q Consensus 241 ~~r~wvlRC~aCf~~t----~~-------~~k~FCP~CGn~ 270 (391)
.+.+|++||..|...+ +. .....||.||..
T Consensus 332 ~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 372 (441)
T 3e20_C 332 DMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAE 372 (441)
T ss_dssp CCEEC----------CCEECSCTTTCCC-------------
T ss_pred ccceeEEECCCCceEEEecCccccccccccccccCcccCcc
Confidence 3457899999995332 11 223489999987
No 80
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=48.26 E-value=5.2 Score=34.87 Aligned_cols=49 Identities=29% Similarity=0.392 Sum_probs=32.2
Q ss_pred EEEecCcHH---HHHHHHHhCCc-e-----eccCccccceeeeEEEEccCcccccccc
Q psy12603 211 VSCVTTDFA---MQNVLKQMGLN-V-----VALDGRLIRELRTFILRCYACYKTTSIM 259 (391)
Q Consensus 211 Vac~TtDfA---MQNVllqmGL~-l-----~s~~G~~Ik~~r~wvlRC~aCf~~t~~~ 259 (391)
-+++.+-|. +|++|...=-. | -+++...++.-|.|.|+|.||....+..
T Consensus 81 rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 81 RVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQ 138 (148)
T ss_dssp EEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCC
T ss_pred EEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCCcccc
Confidence 345666654 66666432111 2 2677888888889999999998877644
No 81
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=46.36 E-value=4.7 Score=28.10 Aligned_cols=7 Identities=43% Similarity=1.312 Sum_probs=3.5
Q ss_pred cCCCCCc
Q psy12603 263 FCPKCGY 269 (391)
Q Consensus 263 FCP~CGn 269 (391)
.||.||+
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 3555544
No 82
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=46.27 E-value=7.9 Score=28.57 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=24.9
Q ss_pred EEccCccccccccCcccCCCCCccceeEEEEEEcC-CCcEEEeeccCCccccC
Q psy12603 247 LRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDE-QGKQKIHINLKRPLTAR 298 (391)
Q Consensus 247 lRC~aCf~~t~~~~k~FCP~CGn~TL~Rvsvsvd~-~G~~~~hl~~n~~~n~R 298 (391)
.-|.-|..+... .-||.||.. +..+ +|-+.| ++...-|-.|
T Consensus 2 rAC~~C~~v~~~---~~CpnC~~~-------tt~~~~G~v~i-~dP~~SwvAk 43 (59)
T 3lpe_B 2 RACLKCKYLTND---EICPICHSP-------TSENWIGLLIV-INPEKSEIAK 43 (59)
T ss_dssp EEETTTCBEESS---SBCTTTCCB-------EESCEECEEEE-SCTTTCHHHH
T ss_pred cccccCCcccCC---CCCCCCCCC-------ccCCEeeEEEE-eCCchhHHHH
Confidence 358888888643 369999983 3222 365544 5555445444
No 83
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=45.62 E-value=19 Score=29.75 Aligned_cols=28 Identities=36% Similarity=0.681 Sum_probs=21.0
Q ss_pred cccCCCCCccceeEEEEEEcCCCc-EEEeec
Q psy12603 261 KVFCPKCGYKTLKRVAVSVDEQGK-QKIHIN 290 (391)
Q Consensus 261 k~FCP~CGn~TL~Rvsvsvd~~G~-~~~hl~ 290 (391)
..+||+||.+| ||.+.+.+||+ +.+..+
T Consensus 73 ~lv~p~~~k~t--Rvg~~~~edG~kvRv~kk 101 (110)
T 3v2d_Y 73 RPICPACGKPT--RVRKKFLENGKKIRVCAK 101 (110)
T ss_dssp EEBCTTTCSBC--CEEEEECSSCCEEEEESS
T ss_pred EEEcCcCCCcc--EEEEEECCCCcEEEEEec
Confidence 48999999986 68888888986 444433
No 84
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=45.28 E-value=68 Score=26.58 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=51.8
Q ss_pred CceeechhHHHhhcCH------HHHHHHhhC--CCceEEecCChhhHHHHHHHHH-HhCCCCCCChhhHHHHHHhhhhhh
Q psy12603 4 DNVITIPEVVNEVTSK------RQIRRLVVL--PYDLQIKEADPDSISFVTEFSK-KTGDYPSLSSTDIKVIALTYELHK 74 (391)
Q Consensus 4 ~~~yT~p~Vi~EIrD~------~sR~~L~~L--p~~L~vreP~~esi~~V~~FAk-kTGD~~sLS~~DI~ViALtyeLe~ 74 (391)
..+|+++-|+.|+--- ..+..|..| -..+.+-.++++.+....+..+ +-++ ..||-.|.-++|+|....+
T Consensus 37 ~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~~~~~v~~~~~~~~~~A~~l~~~~~~~-~~l~~~Dali~A~A~~~g~ 115 (156)
T 1w8i_A 37 GRLFVTNHILDETLTLLKYKKLPADKFLEGFVESGVLNIIYTDDEVERKALEVFKARVYE-KGFSYTDAISEVVAEELKL 115 (156)
T ss_dssp SEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSEEECCCHHHHHHHHHHHHHTTTS-TTCCHHHHHHHHHHHHHTC
T ss_pred CcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCeEEEeCCHHHHHHHHHHHHHHhcc-CCCCHhHHHHHHHHHHcCC
Confidence 5689999999998432 333445543 2347888888888887777776 6555 4599999999999988766
Q ss_pred h
Q psy12603 75 Q 75 (391)
Q Consensus 75 E 75 (391)
.
T Consensus 116 ~ 116 (156)
T 1w8i_A 116 K 116 (156)
T ss_dssp E
T ss_pred E
Confidence 3
No 85
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=44.95 E-value=17 Score=35.79 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=31.8
Q ss_pred HHhCC---ceeccCccccceeeeEEEEccCccccccc------cC------cccCCCCCccceeEEEEEE
Q psy12603 225 KQMGL---NVVALDGRLIRELRTFILRCYACYKTTSI------MT------KVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 225 lqmGL---~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~------~~------k~FCP~CGn~TL~Rvsvsv 279 (391)
.+-|. +|+-++|. -+..+|..|.+++.. +. --.||.||+. .|-.|..
T Consensus 126 ~rAG~~~~~VielHGs------l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~--lrP~VV~ 187 (361)
T 1q14_A 126 RQAGVKDDLIIEAHGS------FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL--VKPAIVF 187 (361)
T ss_dssp HHTTCCGGGEEETTEE------EEEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCB--EEEEECC
T ss_pred hHcCCCcceEEecccc------ccccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCE--eCCCccc
Confidence 34576 58888885 567889999887653 11 1479999974 4665543
No 86
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=44.94 E-value=6.1 Score=32.28 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=11.8
Q ss_pred ccCcccCCCCCccce
Q psy12603 258 IMTKVFCPKCGYKTL 272 (391)
Q Consensus 258 ~~~k~FCP~CGn~TL 272 (391)
...+.||+.||..+.
T Consensus 64 ~~~r~FC~~CGs~l~ 78 (118)
T 3fac_A 64 TAKHWFCRTCGIYTH 78 (118)
T ss_dssp CSEEEEETTTCCEEE
T ss_pred CEeeEECCCCCcccc
Confidence 356899999999743
No 87
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=43.55 E-value=9.2 Score=34.06 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.7
Q ss_pred ccCccccc--eeeeEEEEccCccccccc
Q psy12603 233 ALDGRLIR--ELRTFILRCYACYKTTSI 258 (391)
Q Consensus 233 s~~G~~Ik--~~r~wvlRC~aCf~~t~~ 258 (391)
+++...++ .-+.|.|+|.||....+.
T Consensus 104 sPdT~L~k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 104 NPETDLHVNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred CCccEEEEecCCCEEEEEccccCCcccc
Confidence 66777777 578899999999887764
No 88
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=43.55 E-value=10 Score=28.03 Aligned_cols=21 Identities=33% Similarity=1.037 Sum_probs=13.7
Q ss_pred EEccCccccccccCcccCCCCCc
Q psy12603 247 LRCYACYKTTSIMTKVFCPKCGY 269 (391)
Q Consensus 247 lRC~aCf~~t~~~~k~FCP~CGn 269 (391)
-.|..|.... .....||+||.
T Consensus 31 ~~c~~cG~~~--~pH~vc~~CG~ 51 (60)
T 2zjr_Z 31 TECPQCHGKK--LSHHICPNCGY 51 (60)
T ss_dssp EECTTTCCEE--CTTBCCTTTCB
T ss_pred eECCCCCCEe--CCceEcCCCCc
Confidence 3577777662 45667777773
No 89
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=43.42 E-value=13 Score=29.60 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=18.4
Q ss_pred EEEccCcccccccc------------------CcccCCCCCcc
Q psy12603 246 ILRCYACYKTTSIM------------------TKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t~~~------------------~k~FCP~CGn~ 270 (391)
.++|..|..++... .--.||.||..
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 57899999987631 12269999975
No 90
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=43.13 E-value=16 Score=34.63 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=30.8
Q ss_pred HHhCC---ceeccCccccceeeeEEEEccCccccccc------c------CcccCCCCCccceeEEEEE
Q psy12603 225 KQMGL---NVVALDGRLIRELRTFILRCYACYKTTSI------M------TKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 225 lqmGL---~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~------~------~k~FCP~CGn~TL~Rvsvs 278 (391)
.+-|. +|+-++|. -+..+|..|.+.+.. + .--.||+||+. .|-.|.
T Consensus 118 ~~AG~~~~~v~elHG~------~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~--lrP~vv 178 (289)
T 1q1a_A 118 RQAGVKDDLIIEAHGS------FAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL--VKPAIV 178 (289)
T ss_dssp HHTTCCGGGEEETTEE------EEEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCB--EEEEEC
T ss_pred HHcCCCcccEEEecCC------cCceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCE--ECCCEE
Confidence 34576 58888885 567789999887542 1 12479999963 455554
No 91
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=43.02 E-value=8 Score=36.33 Aligned_cols=15 Identities=33% Similarity=1.079 Sum_probs=11.9
Q ss_pred cccCCCCCccceeEE
Q psy12603 261 KVFCPKCGYKTLKRV 275 (391)
Q Consensus 261 k~FCP~CGn~TL~Rv 275 (391)
..+||.||+..|.+.
T Consensus 34 n~yCPnCG~~~l~~f 48 (257)
T 4esj_A 34 QSYCPNCGNNPLNHF 48 (257)
T ss_dssp HCCCTTTCCSSCEEC
T ss_pred CCcCCCCCChhhhhc
Confidence 579999999877543
No 92
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=42.39 E-value=15 Score=36.81 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=29.8
Q ss_pred eEEEEccC--cccccccc--CcccCCCCCcc-----ceeEEEEEEcCC-CcEEE
Q psy12603 244 TFILRCYA--CYKTTSIM--TKVFCPKCGYK-----TLKRVAVSVDEQ-GKQKI 287 (391)
Q Consensus 244 ~wvlRC~a--Cf~~t~~~--~k~FCP~CGn~-----TL~Rvsvsvd~~-G~~~~ 287 (391)
-|-..|.. |.+.-... ..-+|++||.. -..++++.|... |.+.+
T Consensus 306 ~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~ 359 (444)
T 4gop_C 306 LYYTACASEGCNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWL 359 (444)
T ss_dssp CEEEECCSTTCCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEE
T ss_pred eEEccCCcccCCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEE
Confidence 46778988 99765432 45799999953 355677776554 66654
No 93
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=41.47 E-value=16 Score=26.69 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=25.2
Q ss_pred eccCccccceeeeE-EEEccCccccccccCcccCCCCCcccee
Q psy12603 232 VALDGRLIRELRTF-ILRCYACYKTTSIMTKVFCPKCGYKTLK 273 (391)
Q Consensus 232 ~s~~G~~Ik~~r~w-vlRC~aCf~~t~~~~k~FCP~CGn~TL~ 273 (391)
+.+.-..|-+-+.+ .+.|.-|+.--+. .-.-|-+||+.-|+
T Consensus 4 ~e~~~~~lA~k~~~~k~ICrkC~ARnp~-~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 4 TDPAKLQIVQQRVFLKKVCRKCGALNPI-RATKCRRCHSTNLR 45 (56)
T ss_dssp CCSCCSSTTTTCSCCCEEETTTCCEECT-TCSSCTTTCCCCEE
T ss_pred cchhHHHHHHHHHhchhhhccccCcCCc-ccccccCCCCCCCC
Confidence 34443344444444 6788888876653 34669999987553
No 94
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=41.29 E-value=22 Score=32.95 Aligned_cols=41 Identities=32% Similarity=0.588 Sum_probs=26.6
Q ss_pred ceeccCccccceeeeEEEEccCcccccccc------CcccCCCCCccceeEEEEE
Q psy12603 230 NVVALDGRLIRELRTFILRCYACYKTTSIM------TKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 230 ~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~~------~k~FCP~CGn~TL~Rvsvs 278 (391)
+|+-++|. -+..+|..|.+.+... .--.||.||.. .|-.|.
T Consensus 111 ~v~elHG~------~~~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~--lrP~Vv 157 (249)
T 1m2k_A 111 NVIHLHGS------LRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSL--LRPGVV 157 (249)
T ss_dssp SEEETTEE------EEEEEESSSSCEEECSSCCCSSSCCBCSSSSSB--EEEEEC
T ss_pred cEEEecCC------cceeEeCCCCCcccchhhccCCCCCCCCCCCCC--cCCeEE
Confidence 46677774 4567899998865421 12479999964 355554
No 95
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=41.00 E-value=9.2 Score=28.08 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=23.2
Q ss_pred eeEEEEccCccccccccCcccCCCCCc-cc
Q psy12603 243 RTFILRCYACYKTTSIMTKVFCPKCGY-KT 271 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~k~FCP~CGn-~T 271 (391)
++. -+|.-|.+...-.-|.-|.+||. +.
T Consensus 15 ktH-~~CrRCG~~syH~qK~~Ca~CGygpa 43 (57)
T 1vq8_1 15 TTH-TKCRRCGEKSYHTKKKVCSSCGFGKS 43 (57)
T ss_dssp CCE-EECTTTCSEEEETTTTEETTTCTTTC
T ss_pred Ccc-ccccccCChhhhccccccccccCCch
Confidence 444 46999999988888999999998 64
No 96
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=39.62 E-value=4.1 Score=35.10 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=13.5
Q ss_pred ccCccccceeeeEEEEccCcccccc
Q psy12603 233 ALDGRLIRELRTFILRCYACYKTTS 257 (391)
Q Consensus 233 s~~G~~Ik~~r~wvlRC~aCf~~t~ 257 (391)
+++...++.-|.|.|+|.||...++
T Consensus 111 sPdT~l~k~~r~~~l~C~ACGa~~~ 135 (139)
T 3cw2_K 111 SLDTILKKEKKSWYIVCLACGAQTP 135 (139)
T ss_dssp SSCCCSCSSCSTTTSSCCC------
T ss_pred CcCcEEEEeCCeEEEEecCCCCCCc
Confidence 5566666666777777777776554
No 97
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=38.00 E-value=29 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=17.4
Q ss_pred cccCCCCCccceeEEEEEEcCCCc
Q psy12603 261 KVFCPKCGYKTLKRVAVSVDEQGK 284 (391)
Q Consensus 261 k~FCP~CGn~TL~Rvsvsvd~~G~ 284 (391)
..+||+||.+| ||.+.+.+||+
T Consensus 63 ~lv~p~~~k~t--Rvg~~~~~dg~ 84 (96)
T 2ftc_N 63 KLVDPMDRKPT--EIEWRFTEAGE 84 (96)
T ss_pred EEEeCcCCCce--EEEEEEccCCc
Confidence 37899999875 77777777885
No 98
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=37.93 E-value=13 Score=33.82 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=15.7
Q ss_pred EccCccccccc------cCcccCCCCCccc
Q psy12603 248 RCYACYKTTSI------MTKVFCPKCGYKT 271 (391)
Q Consensus 248 RC~aCf~~t~~------~~k~FCP~CGn~T 271 (391)
.|-+||+++-. +--.+||-|+...
T Consensus 51 ~CG~c~~v~~~~gsv~V~v~D~CP~C~~~~ 80 (208)
T 3d30_A 51 LAGSYLEVEGPKGKTTVYVTDLYPEGARGA 80 (208)
T ss_dssp TTTCEEEEEETTEEEEEEEEEECTTCCTTC
T ss_pred ccCCEEEEEeCCCcEEEEEEECCCCCCCCe
Confidence 57777776531 2247899997653
No 99
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=37.71 E-value=17 Score=33.94 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=29.8
Q ss_pred HhCCceeccCccccc------eeeeEEEEc--cCcccccccc----------CcccCCCCCcc
Q psy12603 226 QMGLNVVALDGRLIR------ELRTFILRC--YACYKTTSIM----------TKVFCPKCGYK 270 (391)
Q Consensus 226 qmGL~l~s~~G~~Ik------~~r~wvlRC--~aCf~~t~~~----------~k~FCP~CGn~ 270 (391)
++| .||++.|..|| .+..=.++| ..|..+.... .-..||.||+.
T Consensus 116 ~ig-kLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~ 177 (268)
T 2vl6_A 116 DIG-KLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 177 (268)
T ss_dssp GTT-SEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB
T ss_pred HCC-CeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCC
Confidence 455 67888887665 455556899 9998654322 12469999984
No 100
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=37.65 E-value=8.7 Score=34.98 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=21.5
Q ss_pred EccCcccccccc-CcccCCCCCccceeEEEEEE
Q psy12603 248 RCYACYKTTSIM-TKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 248 RC~aCf~~t~~~-~k~FCP~CGn~TL~Rvsvsv 279 (391)
+|.++..+.+.. ....||.||+.-.+|||--.
T Consensus 171 ~c~~g~~m~~~~~~~m~cp~cg~~E~RKva~~~ 203 (209)
T 2nn6_I 171 HSESGIQMVPISWCEMQCPKTHTKEFRKVARVQ 203 (209)
T ss_dssp BCSSSCBCEEEETTEEECTTTTCCBCCCC----
T ss_pred EcCCCCEEEEccCCEEECCCCCCEEeeccCCCC
Confidence 687755555443 56889999999999998753
No 101
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=37.39 E-value=18 Score=35.02 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=25.8
Q ss_pred eEEecCChhhHHHHHHHHHHhCCCCCCChhhHHHHHHhhhhhhh
Q psy12603 32 LQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYELHKQ 75 (391)
Q Consensus 32 L~vreP~~esi~~V~~FAkkTGD~~sLS~~DI~ViALtyeLe~E 75 (391)
|.+-+|..=+-++...|..+-.+.+ ...=+..+|-..+...+
T Consensus 20 ~~~p~~~~lf~~RA~Rl~~LA~~~p--~~~yL~f~a~l~~aQ~~ 61 (309)
T 2fiy_A 20 HLHQPSRDLFARRGERLLQLAEGHP--MGDYLRLVAGLCRLQQA 61 (309)
T ss_dssp CEECCCTTHHHHHHHHHHHHHTTCT--THHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666655 45566666665555554
No 102
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=37.33 E-value=10 Score=34.05 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=13.1
Q ss_pred ccCcccCCCCCccceeE
Q psy12603 258 IMTKVFCPKCGYKTLKR 274 (391)
Q Consensus 258 ~~~k~FCP~CGn~TL~R 274 (391)
...+.||+.||..+..+
T Consensus 95 ~~~r~FC~~CGs~l~~~ 111 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGR 111 (196)
T ss_dssp SEEEEEETTTCCEEEEE
T ss_pred CeeeEECCCCCCcCCcc
Confidence 35689999999986443
No 103
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=37.24 E-value=9.6 Score=35.87 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=10.8
Q ss_pred CcccCCCCCccce
Q psy12603 260 TKVFCPKCGYKTL 272 (391)
Q Consensus 260 ~k~FCP~CGn~TL 272 (391)
+-.|||.||.++.
T Consensus 106 ~~~fC~~CG~~~~ 118 (269)
T 1vk6_A 106 SHKYCGYCGHEMY 118 (269)
T ss_dssp TTSBCTTTCCBEE
T ss_pred cCCccccCCCcCc
Confidence 3589999999974
No 104
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=37.19 E-value=24 Score=33.69 Aligned_cols=40 Identities=28% Similarity=0.578 Sum_probs=24.2
Q ss_pred ceeccCccccceeeeEEEEccCccccccccC-------------cccCCCCCccceeEEEEE
Q psy12603 230 NVVALDGRLIRELRTFILRCYACYKTTSIMT-------------KVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 230 ~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~~~-------------k~FCP~CGn~TL~Rvsvs 278 (391)
+|+-++|- -+..+|..|.+.+.... --.|| ||+. .|-.|.
T Consensus 144 ~vielHGs------~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~--lrPdVV 196 (290)
T 3u31_A 144 KVISLHGN------VFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI--FKPNII 196 (290)
T ss_dssp CEEETTEE------EEEEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB--EEEEEC
T ss_pred cEEEecCC------cCcceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE--ECCeEE
Confidence 45555563 46779999987654211 23599 9863 444443
No 105
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.81 E-value=13 Score=27.75 Aligned_cols=25 Identities=28% Similarity=0.921 Sum_probs=21.6
Q ss_pred EEccCccccccccCcccCCCCCc-cc
Q psy12603 247 LRCYACYKTTSIMTKVFCPKCGY-KT 271 (391)
Q Consensus 247 lRC~aCf~~t~~~~k~FCP~CGn-~T 271 (391)
-+|.-|.+...-.-|.-|.+||. ++
T Consensus 18 ~lCrRCG~~syH~qK~~Ca~CGygps 43 (62)
T 3j21_e 18 IRCRRCGRVSYNVKKGYCAACGFGRS 43 (62)
T ss_dssp CBCSSSCSBCEETTTTEETTTCTTTC
T ss_pred eeecccCcchhccccccccccCCchh
Confidence 46999999988889999999998 53
No 106
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=36.67 E-value=12 Score=29.97 Aligned_cols=29 Identities=34% Similarity=0.647 Sum_probs=24.0
Q ss_pred eeeeEEEEccCccccccccCcccCCCCCcc
Q psy12603 241 ELRTFILRCYACYKTTSIMTKVFCPKCGYK 270 (391)
Q Consensus 241 ~~r~wvlRC~aCf~~t~~~~k~FCP~CGn~ 270 (391)
+-++. -.|+-|.+...-.-|.-|.+||.+
T Consensus 12 ~~KtH-tlCrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 4a18_A 12 HQKTH-TLCRRCGKATYHKQKLRCAACGYP 40 (94)
T ss_dssp CCCCE-EECTTTCSEEEETTTTEESSSCGG
T ss_pred CCCcc-ceecCcCchhhhhccccccccCCc
Confidence 33453 469999999888899999999997
No 107
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=35.66 E-value=13 Score=29.91 Aligned_cols=29 Identities=28% Similarity=0.639 Sum_probs=24.0
Q ss_pred eeeEEEEccCccccccccCcccCCCCCccc
Q psy12603 242 LRTFILRCYACYKTTSIMTKVFCPKCGYKT 271 (391)
Q Consensus 242 ~r~wvlRC~aCf~~t~~~~k~FCP~CGn~T 271 (391)
-++. -.|+-|.+...-.-|.-|.+||.+.
T Consensus 13 ~KtH-tlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 3iz5_l 13 NKTH-TLCVRCGRRSFHLQKSTCSSCGYPA 41 (94)
T ss_dssp CCSE-EECTTTCSEEEEGGGTEETTTCSSC
T ss_pred CCcc-ceecCcCchhhhcccccccccCCch
Confidence 3443 4699999998888999999999985
No 108
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=35.52 E-value=14 Score=38.67 Aligned_cols=41 Identities=22% Similarity=0.572 Sum_probs=28.2
Q ss_pred ceeccCccccc------eeeeEEEEccC--cccccccc----------CcccCCCCCcc
Q psy12603 230 NVVALDGRLIR------ELRTFILRCYA--CYKTTSIM----------TKVFCPKCGYK 270 (391)
Q Consensus 230 ~l~s~~G~~Ik------~~r~wvlRC~a--Cf~~t~~~----------~k~FCP~CGn~ 270 (391)
.||++.|..|+ .+....++|.. |...+... .-..||.|++.
T Consensus 113 ~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~ 171 (595)
T 3f9v_A 113 KLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 171 (595)
T ss_dssp CCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC
T ss_pred cEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCC
Confidence 46777787665 46777899999 95443211 23579999984
No 109
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=34.45 E-value=15 Score=27.92 Aligned_cols=36 Identities=6% Similarity=0.239 Sum_probs=25.9
Q ss_pred cccceeeeEEEEccCccccccccCcccCCCCCccce
Q psy12603 237 RLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTL 272 (391)
Q Consensus 237 ~~Ik~~r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL 272 (391)
..++.++...+.=.++..+.++.+-.+|+.||-..+
T Consensus 12 ~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 12 EMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (78)
T ss_dssp BEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEEC
T ss_pred eeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEE
Confidence 356666665555567777777778899999997643
No 110
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.42 E-value=12 Score=27.28 Aligned_cols=8 Identities=50% Similarity=1.726 Sum_probs=3.9
Q ss_pred cccCCCCC
Q psy12603 261 KVFCPKCG 268 (391)
Q Consensus 261 k~FCP~CG 268 (391)
-.+|..||
T Consensus 30 e~vC~~CG 37 (58)
T 1dl6_A 30 DMICPECG 37 (58)
T ss_dssp CEECTTTC
T ss_pred eEEeCCCC
Confidence 44455554
No 111
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=32.99 E-value=27 Score=24.81 Aligned_cols=20 Identities=40% Similarity=0.715 Sum_probs=13.0
Q ss_pred CcccCCCCCccceeEEEEEE
Q psy12603 260 TKVFCPKCGYKTLKRVAVSV 279 (391)
Q Consensus 260 ~k~FCP~CGn~TL~Rvsvsv 279 (391)
...-||+||+..+.=..+-+
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~ 33 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQT 33 (57)
T ss_dssp EECCCTTTCCSEEEEEEECC
T ss_pred eEeECCCCCCCEEEEEEeec
Confidence 35679999986555444444
No 112
>3iz5_r 60S ribosomal protein L42 (L44E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_r 2zkr_4 3izc_r 3izs_r 3o58_f 3o5h_f 3u5e_o 3u5i_o 4b6a_o 1s1i_Z 3j0o_F 3j0l_F 3jyw_Z
Probab=31.81 E-value=20 Score=29.44 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=16.4
Q ss_pred cccC--CCCCccceeEEEEE
Q psy12603 261 KVFC--PKCGYKTLKRVAVS 278 (391)
Q Consensus 261 k~FC--P~CGn~TL~Rvsvs 278 (391)
+-|| |.|+..|+.+|+-+
T Consensus 9 ~tyC~~p~C~kHt~HkVtqy 28 (105)
T 3iz5_r 9 KTYCKNKECRKHTLHKVTQY 28 (105)
T ss_dssp EECCCSTTTCSCEEEEEEEC
T ss_pred eeccCCCCCCCCccEEEEEe
Confidence 6799 99999999999976
No 113
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=31.43 E-value=20 Score=26.37 Aligned_cols=21 Identities=29% Similarity=0.910 Sum_probs=12.8
Q ss_pred EEEccCccccccccCcccCCCCC
Q psy12603 246 ILRCYACYKTTSIMTKVFCPKCG 268 (391)
Q Consensus 246 vlRC~aCf~~t~~~~k~FCP~CG 268 (391)
+-.|..|.... ..-..||.||
T Consensus 30 l~~c~~cGe~~--~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMK--PPHTVCPECG 50 (60)
T ss_dssp CEECTTTCCEE--CTTSCCTTTC
T ss_pred eeECCCCCCee--cceEEcCCCC
Confidence 34577777643 3456677777
No 114
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.29 E-value=23 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.732 Sum_probs=18.7
Q ss_pred EEccCccccccccCcccCCCCCccce
Q psy12603 247 LRCYACYKTTSIMTKVFCPKCGYKTL 272 (391)
Q Consensus 247 lRC~aCf~~t~~~~k~FCP~CGn~TL 272 (391)
..|-+|.+-+.. .-|||-||.++-
T Consensus 49 ~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 49 ARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp EEETTTCCEEEE--EEECTTTCSBCE
T ss_pred EECccccchhhc--cccCcchhhHHH
Confidence 359999987653 489999999843
No 115
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=31.22 E-value=25 Score=32.45 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=26.8
Q ss_pred ceeccCccccceeeeEEEEccCcccccccc---------CcccCCCCCccceeEEEEE
Q psy12603 230 NVVALDGRLIRELRTFILRCYACYKTTSIM---------TKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 230 ~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~~---------~k~FCP~CGn~TL~Rvsvs 278 (391)
+|+-++|. -+.++|..|.+.+... .--.||.||+. .|-.|.
T Consensus 111 ~v~elHG~------~~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~--lrP~vv 160 (246)
T 1yc5_A 111 KVIELHGN------VEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSL--IRPNIV 160 (246)
T ss_dssp CEEETTEE------EEEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCB--EEEEEC
T ss_pred cEEEecCc------cceeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCc--cCcceE
Confidence 46677774 5667899998865420 12479999964 355554
No 116
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.75 E-value=13 Score=29.92 Aligned_cols=9 Identities=44% Similarity=1.047 Sum_probs=7.3
Q ss_pred ccCCCCCcc
Q psy12603 262 VFCPKCGYK 270 (391)
Q Consensus 262 ~FCP~CGn~ 270 (391)
.-||.||++
T Consensus 48 ~~CPvCgs~ 56 (112)
T 1l8d_A 48 GKCPVCGRE 56 (112)
T ss_dssp EECTTTCCE
T ss_pred CCCCCCCCc
Confidence 349999986
No 117
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=30.54 E-value=32 Score=30.12 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=24.8
Q ss_pred ceEEEecCcHHHHHHHHHhCCceeccCc
Q psy12603 209 LVVSCVTTDFAMQNVLKQMGLNVVALDG 236 (391)
Q Consensus 209 ~~Vac~TtDfAMQNVllqmGL~l~s~~G 236 (391)
..|.++|.|+.|...++..||.+.++.-
T Consensus 151 ~~vvLvTnD~nLr~KA~~~Gi~~~~~~~ 178 (186)
T 2dok_A 151 REVVLLTDDRNLRVKALTRNVPVRDIPA 178 (186)
T ss_dssp EEEEEECCCHHHHHHHHHTTCCEECHHH
T ss_pred CcEEEEeCcHHHHHHHHHCCCeeCcHHH
Confidence 4699999999999999999999987653
No 118
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=30.17 E-value=15 Score=27.73 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=6.2
Q ss_pred cccCCCCCcc
Q psy12603 261 KVFCPKCGYK 270 (391)
Q Consensus 261 k~FCP~CGn~ 270 (391)
..-||.|+++
T Consensus 8 iL~CP~ck~~ 17 (68)
T 2hf1_A 8 ILVCPLCKGP 17 (68)
T ss_dssp ECBCTTTCCB
T ss_pred heECCCCCCc
Confidence 3557777765
No 119
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=30.06 E-value=45 Score=29.29 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=28.2
Q ss_pred eEEEEccC--ccccccc--cCcccCCCCCcc-----ceeEEEEEEcC-CCcEEE
Q psy12603 244 TFILRCYA--CYKTTSI--MTKVFCPKCGYK-----TLKRVAVSVDE-QGKQKI 287 (391)
Q Consensus 244 ~wvlRC~a--Cf~~t~~--~~k~FCP~CGn~-----TL~Rvsvsvd~-~G~~~~ 287 (391)
-|-..|.. |.+-..+ ...-+|++||.. -...+++.|.. .|.+.+
T Consensus 41 ~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~i~D~Tg~~~~ 94 (181)
T 1l1o_C 41 CMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWV 94 (181)
T ss_dssp TEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEEEECSSCEEEE
T ss_pred EEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEEEEeCCCCEEE
Confidence 46668998 9975443 245679999864 33455666644 477644
No 120
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=29.50 E-value=40 Score=32.09 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=26.4
Q ss_pred ceeccCccccceeeeEEEEccCcccccccc---------CcccCCCCCccceeEEEEE
Q psy12603 230 NVVALDGRLIRELRTFILRCYACYKTTSIM---------TKVFCPKCGYKTLKRVAVS 278 (391)
Q Consensus 230 ~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~~---------~k~FCP~CGn~TL~Rvsvs 278 (391)
+|+-++|- -+..+|..|.+.+... .---||.||+ +.|-.|.
T Consensus 129 ~VielHGs------~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg--~lrP~IV 178 (285)
T 3glr_A 129 KLVEAHGT------FASATCTVCQRPFPGEDIRADVMADRVPRCPVCTG--VVKPDIV 178 (285)
T ss_dssp GEEETTEE------EEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCC--BEEEEEC
T ss_pred cEEEecCC------CCeEEECCCCCcCCHHHHHHHhhcCCCCCCCCCCC--ccCCcEE
Confidence 67777774 4567999999776421 1235999995 3444443
No 121
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=28.79 E-value=25 Score=27.21 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=18.1
Q ss_pred EEccCccccccccC---cccCCCCCcc
Q psy12603 247 LRCYACYKTTSIMT---KVFCPKCGYK 270 (391)
Q Consensus 247 lRC~aCf~~t~~~~---k~FCP~CGn~ 270 (391)
..|..|.+.+.... .+.||.||+-
T Consensus 38 I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 38 ILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp EEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred EECCCCCCCccCCceeecccCcCCCCc
Confidence 57999998876543 3369999985
No 122
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=28.06 E-value=52 Score=30.59 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=22.0
Q ss_pred cccCCCCCccceeEEEEEEcC-CCcEEEeeccCCccc
Q psy12603 261 KVFCPKCGYKTLKRVAVSVDE-QGKQKIHINLKRPLT 296 (391)
Q Consensus 261 k~FCP~CGn~TL~Rvsvsvd~-~G~~~~hl~~n~~~n 296 (391)
+.+|++||..+--.-.+.+.. ---+.|||++ |.++
T Consensus 226 ~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkR-F~~~ 261 (355)
T 3i3t_A 226 APVCDRCRQKTRSTKKLTVQRFPRILVLHLNR-FSAS 261 (355)
T ss_dssp CCCCSSSCCCCCEEEEEEEEECCSEEEEEECC-EECC
T ss_pred CeeCCCCCCccceEEEEEcccCChheEEEhhh-eecC
Confidence 478999998743333333333 3468899987 5443
No 123
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=27.81 E-value=26 Score=39.30 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=19.2
Q ss_pred EEEccCccccc----------cccCcccCCCCCcc
Q psy12603 246 ILRCYACYKTT----------SIMTKVFCPKCGYK 270 (391)
Q Consensus 246 vlRC~aCf~~t----------~~~~k~FCP~CGn~ 270 (391)
-++|.-|...- -|++-.-||+||.+
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~ 536 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTK 536 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCB
T ss_pred cccCccccccccccccccccccCCccccCcccccc
Confidence 47899998632 36677889999986
No 124
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.31 E-value=15 Score=27.64 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=7.7
Q ss_pred CcccCCCCCcc
Q psy12603 260 TKVFCPKCGYK 270 (391)
Q Consensus 260 ~k~FCP~CGn~ 270 (391)
...-||.|+++
T Consensus 7 ~iL~CP~ck~~ 17 (68)
T 2jr6_A 7 DILVCPVTKGR 17 (68)
T ss_dssp CCCBCSSSCCB
T ss_pred hheECCCCCCc
Confidence 45678888875
No 125
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.04 E-value=15 Score=27.82 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=8.2
Q ss_pred CcccCCCCCcc
Q psy12603 260 TKVFCPKCGYK 270 (391)
Q Consensus 260 ~k~FCP~CGn~ 270 (391)
...-||.|+++
T Consensus 7 ~iL~CP~ck~~ 17 (70)
T 2js4_A 7 DILVCPVCKGR 17 (70)
T ss_dssp CCCBCTTTCCB
T ss_pred hheECCCCCCc
Confidence 45678888885
No 126
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.93 E-value=15 Score=27.61 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=7.1
Q ss_pred CcccCCCCCcc
Q psy12603 260 TKVFCPKCGYK 270 (391)
Q Consensus 260 ~k~FCP~CGn~ 270 (391)
.-.-||.|+++
T Consensus 9 eiL~CP~ck~~ 19 (67)
T 2jny_A 9 EVLACPKDKGP 19 (67)
T ss_dssp CCCBCTTTCCB
T ss_pred HHhCCCCCCCc
Confidence 34567777775
No 127
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=26.54 E-value=27 Score=28.30 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=20.2
Q ss_pred EEEccCcccccccc-----CcccCCCCCcccee
Q psy12603 246 ILRCYACYKTTSIM-----TKVFCPKCGYKTLK 273 (391)
Q Consensus 246 vlRC~aCf~~t~~~-----~k~FCP~CGn~TL~ 273 (391)
++.|.+|.+..+.+ ....|..||.+...
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~ 37 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHSLFD 37 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCBTTC
T ss_pred EEECcccccccCCCCcccccCCcchhcCCcccc
Confidence 67799999876533 34569999988654
No 128
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=26.05 E-value=24 Score=25.61 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=15.5
Q ss_pred ccccccCcccCCCCCccceeEEEE
Q psy12603 254 KTTSIMTKVFCPKCGYKTLKRVAV 277 (391)
Q Consensus 254 ~~t~~~~k~FCP~CGn~TL~Rvsv 277 (391)
++...++...||.||...|....|
T Consensus 20 kl~~~p~l~~c~~cGe~~l~H~vc 43 (56)
T 3r8s_0 20 ALTAVTSLSVDKTSGEKHLRHHIT 43 (56)
T ss_dssp CCCCCCCEEECTTTCCEEETTBCC
T ss_pred hcccCCceeECCCCCCeecccEEC
Confidence 344435678899999876655444
No 129
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.34 E-value=32 Score=27.15 Aligned_cols=27 Identities=30% Similarity=0.821 Sum_probs=19.6
Q ss_pred eeEEEEccCccccccccCcccCCCCCcc
Q psy12603 243 RTFILRCYACYKTTSIMTKVFCPKCGYK 270 (391)
Q Consensus 243 r~wvlRC~aCf~~t~~~~k~FCP~CGn~ 270 (391)
+....||+.|.+-...++..-| .||+.
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~C-rCg~~ 48 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFEC-RCGNN 48 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEEC-TTCCE
T ss_pred cccCccchhhCCeecccCCeEc-CCCCE
Confidence 5667899999986655445667 58875
No 130
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=25.24 E-value=18 Score=27.37 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=13.6
Q ss_pred EEEccCccccccccCcccCCCCCc
Q psy12603 246 ILRCYACYKTTSIMTKVFCPKCGY 269 (391)
Q Consensus 246 vlRC~aCf~~t~~~~k~FCP~CGn 269 (391)
.|||++|-- -.||..|=-
T Consensus 19 tlrC~gCdg------DLYC~rC~r 36 (67)
T 2d8v_A 19 TLRCAGCDG------DLYCARCFR 36 (67)
T ss_dssp CEEETTTTS------EEECSSHHH
T ss_pred eEEecCCCC------ceehHHHHH
Confidence 489999953 388999954
No 131
>1chl_A Chlorotoxin; neurotoxin; NMR {Leiurus quinquestriatus} SCOP: g.3.7.2 PDB: 1sis_A
Probab=25.24 E-value=7 Score=25.96 Aligned_cols=19 Identities=32% Similarity=0.866 Sum_probs=15.0
Q ss_pred EccCccccccccCcccCCCC
Q psy12603 248 RCYACYKTTSIMTKVFCPKC 267 (391)
Q Consensus 248 RC~aCf~~t~~~~k~FCP~C 267 (391)
+|.-||++.+.|. .+|-.|
T Consensus 1 ~C~PCfttdp~m~-~kC~~C 19 (36)
T 1chl_A 1 MCMPCFTTDHQMA-RKCDDC 19 (36)
T ss_dssp CBSCSCSCSSSSH-HHHHHH
T ss_pred CCCCCcCCChhHH-HHHHHH
Confidence 5899999999986 457665
No 132
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=24.60 E-value=82 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=29.0
Q ss_pred HHHHHHhhCC---CceEEecCChhhHHHHHHHHHHhC
Q psy12603 20 RQIRRLVVLP---YDLQIKEADPDSISFVTEFSKKTG 53 (391)
Q Consensus 20 ~sR~~L~~Lp---~~L~vreP~~esi~~V~~FAkkTG 53 (391)
++++.|..|+ -.|+|.--.+.++.-|..||+.+|
T Consensus 17 ~~kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G 53 (87)
T 3hz7_A 17 RAKKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMG 53 (87)
T ss_dssp HHHHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCC
Confidence 3677787773 459999999999999999999999
No 133
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=24.22 E-value=12 Score=30.01 Aligned_cols=23 Identities=26% Similarity=0.717 Sum_probs=19.5
Q ss_pred EccCccccccccCcccCCCCCcc
Q psy12603 248 RCYACYKTTSIMTKVFCPKCGYK 270 (391)
Q Consensus 248 RC~aCf~~t~~~~k~FCP~CGn~ 270 (391)
.|+.||..-+.-..+-||.|+..
T Consensus 45 vCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 45 ACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp CCHHHHHHHHHTSCSSCTTTCCC
T ss_pred hhHHHHHHHHhccCccccccCCc
Confidence 38889988777788999999976
No 134
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=23.98 E-value=36 Score=33.22 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=27.3
Q ss_pred HHhCC---ceeccCccccceeeeEEEEccCccccccc---------cCcccCCCCCc
Q psy12603 225 KQMGL---NVVALDGRLIRELRTFILRCYACYKTTSI---------MTKVFCPKCGY 269 (391)
Q Consensus 225 lqmGL---~l~s~~G~~Ik~~r~wvlRC~aCf~~t~~---------~~k~FCP~CGn 269 (391)
.+-|+ +|+-++|. -+..+|..|.+.+.. ..--.||.||.
T Consensus 143 ~rAG~~~~~vielHGs------l~~~~C~~C~~~~~~~~~~~~~~~~~~P~Cp~C~~ 193 (354)
T 2hjh_A 143 SYAGISTDKLVQCHGS------FATATCVTCHWNLPGERIFNKIRNLELPLCPYCYK 193 (354)
T ss_dssp HHTTCCTTTEEETTEE------EEEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHH
T ss_pred HHcCCCccCEEEecCC------cCccccCCCCCcCCHHHHHHHhhccCCCcCccccc
Confidence 45676 78888885 567789999875432 12357999984
No 135
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.96 E-value=17 Score=27.47 Aligned_cols=11 Identities=27% Similarity=0.612 Sum_probs=7.6
Q ss_pred CcccCCCCCcc
Q psy12603 260 TKVFCPKCGYK 270 (391)
Q Consensus 260 ~k~FCP~CGn~ 270 (391)
.-.-||.|+++
T Consensus 7 eiL~CP~ck~~ 17 (69)
T 2pk7_A 7 DILACPICKGP 17 (69)
T ss_dssp GTCCCTTTCCC
T ss_pred hheeCCCCCCc
Confidence 34568888876
No 136
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=23.89 E-value=29 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=17.3
Q ss_pred EccCccccccccCcccCCCCCccc
Q psy12603 248 RCYACYKTTSIMTKVFCPKCGYKT 271 (391)
Q Consensus 248 RC~aCf~~t~~~~k~FCP~CGn~T 271 (391)
.|.-|..-..-..|.-|.+||.+.
T Consensus 18 lCrRCG~~sfH~qK~~CgkCGYpa 41 (97)
T 2zkr_2 18 LCRRCGSKAYHLQKSTCGKCGYPA 41 (97)
T ss_dssp CCTTTCSSCEETTSCCBTTTCTTT
T ss_pred cCCCCCCccCcCccccCcccCCch
Confidence 577787766566677888888763
No 137
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=21.47 E-value=14 Score=34.28 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=31.9
Q ss_pred ccceeeeEEEEccCccccccccCcccCCCCCccceeE-EEEEEcC
Q psy12603 238 LIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKR-VAVSVDE 281 (391)
Q Consensus 238 ~Ik~~r~wvlRC~aCf~~t~~~~k~FCP~CGn~TL~R-vsvsvd~ 281 (391)
.|..++.-+-+|.-|+.++. ..-|+.|.++.-.+ +=|.|.+
T Consensus 46 al~~~~~~i~~C~~C~nlte---~~~C~IC~d~~Rd~~~iCVVE~ 87 (228)
T 1vdd_A 46 ALLEAKRDLHVCPICFNITD---AEKCDVCADPSRDQRTICVVEE 87 (228)
T ss_dssp HHHHHHHHCEECSSSCCEES---SSSCHHHHCSSSCTTEEEEESS
T ss_pred HHHHHHhcCeEcCCCCCCcC---CCcCCCCCCCCcCCCeEEEECC
Confidence 46677888999999999974 46799999987765 6666643
No 138
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.85 E-value=26 Score=25.26 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=22.6
Q ss_pred eccCccccceeeeEEEEccCccccc---cccCcccCCCCCcc
Q psy12603 232 VALDGRLIRELRTFILRCYACYKTT---SIMTKVFCPKCGYK 270 (391)
Q Consensus 232 ~s~~G~~Ik~~r~wvlRC~aCf~~t---~~~~k~FCP~CGn~ 270 (391)
-.|++-.|.++ ...|.-|.... ..-.+..|++||.-
T Consensus 7 y~v~~gki~~~---~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 7 YEIADGKLVRK---HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCCCCCCCCS---SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EEEcCCEEEEc---cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 34443335544 45688887632 33368899999985
No 139
>2fe1_A Conserved hypothetical protein PAE0151; PIN domain, structural genomics, unknown function; 2.20A {Pyrobaculum aerophilum} SCOP: c.120.1.1
Probab=20.41 E-value=2.1e+02 Score=23.56 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=42.3
Q ss_pred CceeechhHHHhhcCHH-------------HHHHHhh----CCCceEEecCChhhHHHHHHHHHHhCCCCCCChhhHHHH
Q psy12603 4 DNVITIPEVVNEVTSKR-------------QIRRLVV----LPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVI 66 (391)
Q Consensus 4 ~~~yT~p~Vi~EIrD~~-------------sR~~L~~----Lp~~L~vreP~~esi~~V~~FAkkTGD~~sLS~~DI~Vi 66 (391)
..+++.+-|+.|+-.-- .+..|.. +. .+.+. ..++.+..+.+.+++.| |+..|--++
T Consensus 56 ~~~~is~~~~~Ev~~vl~r~~~~~~l~~~~~~~~l~~~~~~l~-~l~i~-~~~~~~~~A~~l~~~~~----l~~~Dal~l 129 (156)
T 2fe1_A 56 QELHTLDLAAYEVANDLWKHARRGLLREDEASNMLEELWEFFK-ALKVH-SYAEVLKDAFALALKHG----VTVYDAAYV 129 (156)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-TSEEE-CGGGTHHHHHHHHHHHT----CCHHHHHHH
T ss_pred cCeehHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-hcccc-cchHHHHHHHHHHHHhC----cCHHHHHHH
Confidence 45788888899984321 2222322 32 12232 22266667777888776 899999999
Q ss_pred HHhhhhhhh
Q psy12603 67 ALTYELHKQ 75 (391)
Q Consensus 67 ALtyeLe~E 75 (391)
|+|..+.+.
T Consensus 130 A~A~~~~~~ 138 (156)
T 2fe1_A 130 ALAEKIGGK 138 (156)
T ss_dssp HHHHHHTCE
T ss_pred HHHHHcCCC
Confidence 999998654
No 140
>1tie_A Erythrina trypsin inhibitor; proteinase inhibitor (trypsin); 2.50A {Erythrina caffra} SCOP: b.42.4.1
Probab=20.17 E-value=96 Score=27.18 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=21.7
Q ss_pred cccCCCCCccceeEEEEEEcCCCcEEEeecc
Q psy12603 261 KVFCPKCGYKTLKRVAVSVDEQGKQKIHINL 291 (391)
Q Consensus 261 k~FCP~CGn~TL~Rvsvsvd~~G~~~~hl~~ 291 (391)
..|||.|... =.-|-++.|.+|.-++-+..
T Consensus 129 L~~Cp~c~~~-C~dvGi~~d~~g~rrL~l~~ 158 (172)
T 1tie_A 129 LLYCEGKHEK-CASIGINRDQKGYRRLVVTE 158 (172)
T ss_dssp EEEECSTTTC-EEEEEEEECTTSCEEEEECS
T ss_pred EEEeCCCCCc-cccceEEECCCCeEEEEecC
Confidence 4899988554 46788888878877666654
No 141
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.10 E-value=26 Score=32.94 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=10.1
Q ss_pred eEEecCChhhHHHHHHHHH-HhC
Q psy12603 32 LQIKEADPDSISFVTEFSK-KTG 53 (391)
Q Consensus 32 L~vreP~~esi~~V~~FAk-kTG 53 (391)
+.|+.|.-.. ..+.+|+. .+|
T Consensus 25 v~v~~~~l~~-~~~~~~~~~L~G 46 (271)
T 2xzf_A 25 IEATYPRMVL-TGFEQLKKELTG 46 (271)
T ss_dssp EEESCGGGBT-TCHHHHHHHHTT
T ss_pred EEEcCCcccc-CCcHHHHHhcCC
Confidence 6666664211 01245655 666
Done!