RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12603
(391 letters)
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding
protein, unknown function, structural genomics, NPPSFA;
NMR {Mus musculus} SCOP: g.41.15.1
Length = 79
Score = 116 bits (292), Expect = 1e-32
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 233 ALDGRLIRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK 292
+ +RE R++ILRC+ C+KTTS M +VFC CG KTLK+V+V++++ G +H +
Sbjct: 2 SSGSSGVREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRN 61
Query: 293 -RPLTARGKKFSLPTFKG 309
+ L RG ++S G
Sbjct: 62 PKVLNPRGLRYSSGPSSG 79
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome
biogenesis, metal BIN protein; NMR {Pyrococcus
horikoshii}
Length = 165
Score = 84.2 bits (208), Expect = 1e-19
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 4 DNVITIPEVVNEVTSKRQIRRLVVL--PYDLQIKEADPDSISFVTEFSKKTGDYPSLSST 61
T P VV E+ + L L ++I E +SI + + +K+TG+ LS
Sbjct: 26 IEGYTTPSVVEEIKDRESKIFLESLISAGKVKIAEPSKESIDRIIQVAKETGEVNELSKA 85
Query: 62 DIKVIALTYELHKQHIGVD----------SINTEPISRQI 91
DI+V+AL YEL + D + + R I
Sbjct: 86 DIEVLALAYELKGEIFSDDYNVQNIASLLGLRFRTLKRGI 125
Score = 83.0 bits (205), Expect = 3e-19
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 209 LVVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSIMTKV-FCPKC 267
L + D+ +QN+ +GL L I+++ + C C + S + CP C
Sbjct: 96 LKGEIFSDDYNVQNIASLLGLRFRTLKRG-IKKVIKWRYVCIGCGRKFSTLPPGGVCPDC 154
Query: 268 GYKTLKR 274
G K
Sbjct: 155 GSKVKLI 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 3e-09
Identities = 69/449 (15%), Positives = 128/449 (28%), Gaps = 133/449 (29%)
Query: 1 DIGD---NVIT---IPEVVNEVTSKRQIRRLVVLPYDLQIKEADPDSI--SFVTEFSKKT 52
D+ D ++++ I ++ + RL + + + FV E +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRL------FWTLLSKQEEMVQKFVEEVLRI- 89
Query: 53 GDYPSLSS--------TDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEV 104
+Y L S + + + + +SR L ++
Sbjct: 90 -NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-----QPYLKLRQA 143
Query: 105 LAGFYSPSRGCTFNVDGGYLEG-------LCR------GFKNGILKQTDYLNLVQCESLE 151
L P++ + G G +C I +LNL C S E
Sbjct: 144 LLEL-RPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCNSPE 196
Query: 152 ELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQ----RTMDARQYEEK 207
+ + ++L +ID + SD S N + Q R + ++ YE
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSN----------IKLRIHSIQAELRRLLKSKPYENC 246
Query: 208 PLV--------------VSC---VTT-DFAMQNVLKQMGLNVVALDGRLIRELRTFILRC 249
LV +SC +TT + + L ++LD T
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD----HHSMTLTPD- 301
Query: 250 YACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLKRPLT----ARGKKFSLP 305
+ S++ K C + L R + + P A + L
Sbjct: 302 ----EVKSLLLKYL--DCRPQDLPREVL--------TTN-----PRRLSIIAESIRDGLA 342
Query: 306 TFKGGKHANNPIVAEDQPVPDQRPTRLGRTKTNALDPDYIAGM-SPFAV--HDINSKSAM 362
T+ KH N + T + + N L+P M +V + + +
Sbjct: 343 TWDNWKHVNC-----------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 363 LGIRNNGKNNEVKYWMYKNPNAVKRKAKK 391
L + W + V K
Sbjct: 392 LSL----------IWFDVIKSDVMVVVNK 410
Score = 46.8 bits (110), Expect = 1e-05
Identities = 35/271 (12%), Positives = 71/271 (26%), Gaps = 88/271 (32%)
Query: 11 EVVNEVTSKRQIRRLVVLPYDLQI------------KEADPDSISFVTEFSKKTGDYPSL 58
V+ ++ RL V P I ++D + V + K SL
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKY-----SL 416
Query: 59 SSTDIKVIALTYELHKQHIGVDSINTEPISRQISYINHSVLTDKEVLAGFYSPSRGCTFN 118
K T + ++ + + H + D + +
Sbjct: 417 VEKQPK--ESTISIPSIYL--ELKVKLENEYAL----HRSIVDHYNIPKTFDSDDLIPPY 468
Query: 119 VDG------GY-LEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEH 171
+D G+ L+ + + + + +L+ LE QKI HD
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDF---RFLE----------QKIRHD---- 510
Query: 172 SDDSGNEDDDDGGEWITPSNLKQAQRTMDARQYEEKPLVVSCVTTDFAMQNVLKQMGLNV 231
W ++ + Y+ + N
Sbjct: 511 -----------STAWNASGSI--LNTLQQLKFYK-------------------PYICDND 538
Query: 232 VALDGRLIRELRTFILRCYA---CYKTTSIM 259
+ RL+ + F+ + C K T ++
Sbjct: 539 PKYE-RLVNAILDFLPKIEENLICSKYTDLL 568
Score = 38.7 bits (89), Expect = 0.004
Identities = 45/360 (12%), Positives = 99/360 (27%), Gaps = 122/360 (33%)
Query: 131 FKNGILKQTDYLNLVQCESLEELEDHTPEVLQK--IDH-----DEEEHSD-------DSG 176
F++ + D C+ +++D +L K IDH D +
Sbjct: 25 FEDAFVDNFD------CK---DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 177 N--------EDDDDGGEWI-TPSNLKQAQRTMDARQYEEK------------PLVVSCVT 215
E +++ +P +Q Q +M R Y E+ VS +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 216 TDFAMQNVLKQM--GLNVVALDGR-------LIRE-LRTFILRCYA-----------CYK 254
++ L ++ NV+ +DG + + ++ ++C C
Sbjct: 136 PYLKLRQALLELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 255 TTSIMTKV--FCPKCGYKTLKRVAVSVDEQGKQKIHIN-----LKRPLTARGKKFSL--- 304
+++ + Y+ D K+ I+ L+R L ++ + L
Sbjct: 195 PETVLEMLQKLL----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 305 ---------PTFKGG---------KHANNPIVAEDQPVPDQRPTRLGRTKTNALD----- 341
F K + + A + T
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 342 --------PDYIAGMSPFAVHDINSKSAMLG--IRNNGKNNEVKYWMYKNPNAVKRKAKK 391
P + +P + +++ IR+ W + N + + +
Sbjct: 311 LDCRPQDLPREVLTTNPRRL-------SIIAESIRDG--LATWDNWKHVNCDKLTTIIES 361
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C
subunit, thermus thermophi riken structural
genomics/proteomics initiative; 1.85A {Thermus
thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Length = 323
Score = 36.2 bits (83), Expect = 0.013
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 122 GYLEGLCRGFKNGILKQTDYLNLVQCESLEEL 153
YL R + +LK++ + + + L
Sbjct: 6 AYLNARVRVRRGTLLKESFFQEALDLSFADFL 37
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.13
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 24/53 (45%)
Query: 19 KRQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYE 71
K+ +++L +K DS P+L+ IK T E
Sbjct: 19 KQALKKL-----QASLKLYADDSA-------------PALA---IKA---TME 47
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m
3o58_g 3o5h_g 3u5e_p 3u5i_p 1s1i_9
Length = 92
Score = 31.0 bits (70), Expect = 0.16
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 260 TKVFCPKCGYKTLKRVAVSVDEQGKQK 286
+ C CG KT+KR A + K
Sbjct: 35 ARYDCSFCGKKTVKRGAAGIWTCSCCK 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.26
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 117 FNVDGG-Y--------LEGLCRGFKNGILKQTDYLNLVQCESLEELEDH 156
+NV+ Y L+ + L++ D + L + SLEE+E H
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 30.4 bits (68), Expect = 1.2
Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 85/225 (37%)
Query: 79 VDSINTEPISRQISY--INHSVLTDKEVLAGFYSPSRGCTFNVDGGYLEGLCRGFKNGIL 136
+D+ +T P++ +S+ + H +L P+
Sbjct: 1 MDAYSTRPLT--LSHGSLEHVLLV----------PT------------------------ 24
Query: 137 KQTDYLNLVQCESL-EELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQA 195
+ Q L E+ PE + D+E + P+ L
Sbjct: 25 --ASFFIASQ---LQEQFNKILPEPTEGFAADDEPTT----------------PAEL--V 61
Query: 196 QRTMD--ARQYEEKPL-----VVSCVTTDFAMQNVLKQMGLNVVALDGRLIRELRT---- 244
+ + + E + V++ T+F L+ G ++ AL +L++E T
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLE--GNDIHALAAKLLQENDTTLVK 118
Query: 245 --FILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKI 287
+++ Y + + F K L R +G ++
Sbjct: 119 TKELIKNY--ITARIMAKRPF-DKKSNSALFRAV----GEGNAQL 156
Score = 29.2 bits (65), Expect = 3.1
Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 65/180 (36%)
Query: 73 HKQHIGVDSINTEPISRQI----------SY---INHSVLTDKEVLAGFYSPSRGCTFNV 119
+Q +G+D T ++ + +Y I V+ + L + +G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE 1686
Query: 120 DGGYLEGLCRGFKNGILKQTDYLNLVQCESLEELEDHTPEVLQKIDHDEEEHSDDSGNED 179
+ Y + +G LK + +E+ +H+ ++
Sbjct: 1687 N--YSAMIFETIVDGKLKTE--------KIFKEINEHSTSYT--FRSEKGL--------- 1725
Query: 180 DDDGGEWITPSNLKQAQRTMDARQYEEKP--LVVSCVTTDFAMQNVLKQMGL----NVVA 233
L Q T Q P ++ A LK GL A
Sbjct: 1726 ------------LSATQFT----Q----PALTLME-----KAAFEDLKSKGLIPADATFA 1760
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Y 4a1c_Y 4a1e_Y
Length = 103
Score = 30.3 bits (68), Expect = 0.30
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 260 TKVFCPKCGYKTLKRVAVSVDEQGKQK 286
K CP CG +KR AV + + K
Sbjct: 35 AKYGCPFCGKVAVKRAAVGIWKCKPCK 61
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit;
zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP:
g.59.1.1
Length = 36
Score = 28.6 bits (64), Expect = 0.31
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 235 DGRLIRELRTFILRCYACYKTTSI 258
D ++I+E R +L+C AC I
Sbjct: 10 DTKIIKEGRVHLLKCMACGAIRPI 33
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 72
Score = 29.4 bits (66), Expect = 0.35
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 260 TKVFCPKCGYKTLKRVAVSVDEQGKQK 286
+ C CG KT+KR A + K
Sbjct: 25 ARYDCSFCGKKTVKRGAAGIWTCSCCK 51
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 29.8 bits (67), Expect = 0.39
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 260 TKVFCPKCGYKTLKRVAVSVDEQGKQK 286
+K FC CG +KR AV +
Sbjct: 35 SKYFCEFCGKFAVKRKAVGIWGCKDCG 61
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding protein;
NMR {Helicobacter pylori}
Length = 119
Score = 30.1 bits (68), Expect = 0.41
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 2/39 (5%)
Query: 232 VALDGRLIRELRTFILRCYACYKTTSIMTKVF--CPKCG 268
V D L L C C + C KC
Sbjct: 59 VCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCH 97
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z*
1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z*
1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z*
1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Length = 83
Score = 29.0 bits (65), Expect = 0.54
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 261 KVFCPKCGYKTLKRVAVSVDEQGKQK 286
CP CG + R + +
Sbjct: 27 DHACPNCGEDRVDRQGTGIWQCSYCD 52
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 28.6 bits (64), Expect = 0.72
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 261 KVFCPKCGYKTLKRVAVSVDEQGKQK 286
K CP CG+ LKR + S+ G
Sbjct: 27 KYKCPVCGFPKLKRASTSIWVCGHCG 52
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic
sequnece for R-proteins, ribonucleoprotein, ribosoma
protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A
{Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z*
3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z*
3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z*
3i56_Z* 3cpw_Y* 4adx_Z
Length = 116
Score = 29.1 bits (65), Expect = 0.93
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 261 KVFCPKCGYKTLKRVAVSVDEQGKQK 286
CP CG + R + +
Sbjct: 60 DHACPNCGEDRVDRQGTGIWQCSYCD 85
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 1.1
Identities = 7/61 (11%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 157 TPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITP-----SNLKQAQRTMDARQYEEKPLVV 211
+ + ++++ E + ++D + P S L+ + +++ LV+
Sbjct: 115 SVGMAIQVNYSSEVKENSVDSDDKAK----VPPLIRIVSGLELSDTKQKGKKF----LVI 166
Query: 212 S 212
+
Sbjct: 167 A 167
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.5
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 18/62 (29%)
Query: 148 ESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGEWITPSNLKQAQRTMDA--RQYE 205
ES+ + + + LQ++D + EW ++A++ ++ ++
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQ-----------EWR-----EKAKKDLEEWNQRQS 128
Query: 206 EK 207
E+
Sbjct: 129 EQ 130
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 27.1 bits (60), Expect = 1.8
Identities = 5/20 (25%), Positives = 5/20 (25%)
Query: 249 CYACYKTTSIMTKVFCPKCG 268
CY C C C
Sbjct: 18 CYGCQGELKDQHVYVCAVCQ 37
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P
2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Length = 48
Score = 26.9 bits (59), Expect = 1.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 246 ILRCYACYKTTS-----IMTKVFCPKCGYKTLKRV 275
+ RC C+KT + ++ V CP CGYK + V
Sbjct: 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif,
zinc ribbon binding protein; NMR {Xenopus laevis}
Length = 92
Score = 27.6 bits (61), Expect = 2.1
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 203 QYEEKPLVVSCVT---TDFAMQNVLKQMGLNVVALDGRLIRELRTFILRCYACYKTTSI- 258
E+ VV+C T T F + + +G R F +C +T S+
Sbjct: 8 IREQSCRVVTCKTCKYTHFKPKETCVSENHDFHWHNG----VKRFF--KCPCGNRTISLD 61
Query: 259 -MTKVFCPKCGYKTLKRVAVSVDEQG 283
+ K C CG +RV + ++ G
Sbjct: 62 RLPKKHCSTCGLFKWERVGMLKEKTG 87
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native,
oxidoredu; HET: PQQ; 1.50A {Methylophilus
methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A*
4aah_A* 1g72_A*
Length = 571
Score = 29.1 bits (65), Expect = 2.5
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 38/96 (39%)
Query: 173 DDSGNEDDDDGGEW-----------------ITPSN---LKQA--QRTMDARQYEEKPLV 210
D ++ + G W I SN +K A T +E PLV
Sbjct: 1 DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNVKAAWSFSTGVLNGHEGAPLV 60
Query: 211 VSCV---TTDFAMQNVLKQMGLNVVALD----GRLI 239
+ + + A N N AL+ G+++
Sbjct: 61 IGDMMYVHS--AFPN-------NTYALNLNDPGKIV 87
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.1 bits (66), Expect = 3.1
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 206 EKPLVVSCVT--TDFAMQNVLKQMGLNVVALDG 236
+K + ++C + +L + G V +DG
Sbjct: 541 DKDIYITCQLGMRGYVAARMLMEKGYKVKNVDG 573
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron,
oxidative stress, metal transport; 2.30A {Bacteroides
fragilis}
Length = 170
Score = 27.8 bits (62), Expect = 4.7
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 150 LEELEDH-TPEVLQKIDHDEEEHSDD 174
+D+ T ++ + I +EEEH D
Sbjct: 127 FTNGKDYTTCDIAKHILAEEEEHEQD 152
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 28.3 bits (62), Expect = 4.8
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 124 LEGLCRGFKNGILKQ-TDYLNLVQ--CESLEELEDHTPEVLQKIDHDEEEHSDDSGNEDD 180
+ + R K L T ++ V+ E +E+ + + ++ EE +SD+ +EDD
Sbjct: 162 MPQIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEESDPYSGLLNDTEENNSDNHNHEDD 221
Query: 181 DDGGE 185
G
Sbjct: 222 VLGFP 226
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 28.1 bits (63), Expect = 4.8
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 150 LEELEDHTPEVLQKIDHDEEEHSDDSGNEDDDDGGE--------WITPSNLKQ 194
+E+ + E DH + H S +E + G W++P+ +K+
Sbjct: 91 MEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPTLVKR 143
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A
{Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Length = 240
Score = 28.1 bits (61), Expect = 4.9
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 13 VNEVTSK-RQIRRLVVLPYDLQIKEADPDSISFVTEFSKKTGDYPSLSSTDIKVIALTYE 71
+ + + R IRR PY L +K + + + + Y +L
Sbjct: 168 LRQPSGPMRSIRRTQQAPYPL-VKLTPQQANQLKSNSASVSSQYNTLPKLGDTKSLHRVP 226
Query: 72 LHKQHIGVDSIN 83
+ +Q + + +
Sbjct: 227 MTRQQHPLPTSH 238
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 27.9 bits (63), Expect = 6.2
Identities = 5/33 (15%), Positives = 9/33 (27%), Gaps = 2/33 (6%)
Query: 206 EKPLVVSCVT--TDFAMQNVLKQMGLNVVALDG 236
+K +++ L G L G
Sbjct: 524 DKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIG 556
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme,
3_10 helix, lyase; 2.35A {Paracoccus denitrificans}
SCOP: b.88.1.4 PDB: 1xa8_A*
Length = 196
Score = 27.4 bits (60), Expect = 7.6
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 250 YACYKTTSIMTKVFCPKCGYKTLKRV 275
+ + + C CG R+
Sbjct: 87 LEIVNAEAPIQRHRCRDCGVHMYGRI 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,998,286
Number of extensions: 364843
Number of successful extensions: 1068
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 44
Length of query: 391
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 296
Effective length of database: 4,049,298
Effective search space: 1198592208
Effective search space used: 1198592208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.6 bits)