RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12603
         (391 letters)



>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one
           binding) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 66

 Score =  105 bits (265), Expect = 4e-29
 Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 239 IRELRTFILRCYACYKTTSIMTKVFCPKCGYKTLKRVAVSVDEQGKQKIHINLK-RPLTA 297
           +RE R++ILRC+ C+KTTS M +VFC  CG KTLK+V+V++++ G   +H +   + L  
Sbjct: 1   VREARSYILRCHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLHMHFSRNPKVLNP 60

Query: 298 RGKKFS 303
           RG ++S
Sbjct: 61  RGLRYS 66


>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus
           thermophilus [TaxId: 274]}
          Length = 319

 Score = 33.4 bits (76), Expect = 0.040
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 122 GYLEGLCRGFKNGILKQTDYLNLVQCESLE 151
            YL    R  +  +LK++ +   +     +
Sbjct: 2   AYLNARVRVRRGTLLKESFFQEALDLSFAD 31


>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation
           initiation factor 2 beta {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 37

 Score = 29.6 bits (67), Expect = 0.043
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 235 DGRLIRELRTFILRCYACYKTTSI 258
           D R+IRE R  +L+C AC     +
Sbjct: 11  DTRIIREGRISLLKCEACGAKAPL 34


>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation
           factor 2 beta {Archaeon Methanococcus jannaschii [TaxId:
           2190]}
          Length = 36

 Score = 29.6 bits (67), Expect = 0.050
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 235 DGRLIRELRTFILRCYACYKTTSI 258
           D ++I+E R  +L+C AC     I
Sbjct: 10  DTKIIKEGRVHLLKCMACGAIRPI 33


>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 73

 Score = 30.0 bits (68), Expect = 0.085
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 261 KVFCPKCGYKTLKRVAVSV 279
              CP CG   + R    +
Sbjct: 27  DHACPNCGEDRVDRQGTGI 45


>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula
           marismortui [TaxId: 2238]}
          Length = 73

 Score = 30.0 bits (68), Expect = 0.088
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 261 KVFCPKCGYKTLKRVAVSV 279
           K  CP CG+K LKR    +
Sbjct: 27  KHKCPVCGFKKLKRAGTGI 45


>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
           5691]}
          Length = 291

 Score = 29.2 bits (65), Expect = 0.75
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 5/23 (21%)

Query: 300 KKFSLPT-----FKGGKHANNPI 317
           K+  LP        GGKHA N +
Sbjct: 1   KELRLPVPCFNVINGGKHAGNAL 23


>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 25.9 bits (57), Expect = 1.8
 Identities = 5/20 (25%), Positives = 5/20 (25%)

Query: 249 CYACYKTTSIMTKVFCPKCG 268
           CY C           C  C 
Sbjct: 18  CYGCQGELKDQHVYVCAVCQ 37


>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
           562]}
          Length = 292

 Score = 27.6 bits (61), Expect = 2.4
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 5/23 (21%)

Query: 300 KKFSLPT-----FKGGKHANNPI 317
            K+S+P        GG+HA+N +
Sbjct: 2   GKYSMPVPMMNIINGGEHADNNV 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,457,996
Number of extensions: 69739
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 10
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)