BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12605
(845 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 360 bits (923), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 203/458 (44%), Positives = 279/458 (60%), Gaps = 40/458 (8%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAAR 55
MRRRR EV VELRK K++E + KRRNV A S +++ VN + +V+
Sbjct: 27 MRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGIN 86
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115
+N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+AWALTN
Sbjct: 87 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 146
Query: 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 175
IASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI G G RD VI G +
Sbjct: 147 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAI 206
Query: 176 PPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231
PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 207 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 266
Query: 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291
V L D+ WA+SYLTDG N++I+MV+ GVVP L+ L
Sbjct: 267 V-------------------------LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301
Query: 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351
L E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SN
Sbjct: 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361
Query: 352 ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEV 410
ITAG Q Q+Q V++ GL+P ++ L K Q AAWA+TN S GT Q +
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKAAAWAITNYTSGGTVEQIVYL 416
Query: 411 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 448
V G + + LL + + + + + A+ NI +L
Sbjct: 417 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 454
Score = 273 bits (698), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/499 (34%), Positives = 259/499 (51%), Gaps = 88/499 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 109 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 164
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI G G RD VI G + PLL+ + PD+
Sbjct: 165 PAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 224
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 265
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 266 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 302
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 349
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 350 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 391
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQK AAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 392 KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 452 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 511
Query: 827 DGGFELDQNPSIPNEGFKF 845
GF P F F
Sbjct: 512 SEGFAFQVQDGAPGT-FNF 529
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 50/324 (15%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 216 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ--ILPTLVRLLHHND-PEVLADSC 272
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 273 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 332
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 333 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K WA++ T GG +QI ++ G++
Sbjct: 389 AD-------------------------FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIE 423
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 424 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 483
Query: 341 ICKEAVWFLSNITAGNQAQVQAVI 364
+ K ++ + + + + Q V+
Sbjct: 484 VYKASLNLIEKYFSVEEEEDQNVV 507
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 340 bits (871), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 187/431 (43%), Positives = 263/431 (61%), Gaps = 41/431 (9%)
Query: 23 KRRNVPLADSTDEDDIEKMAQVNLDML------VVEAARKDNPELQLLAVQSARKLLSSD 76
+R+++ D +DD + MA + + +V+ +N E QL A Q+ARKLLS +
Sbjct: 13 ERQHMDSPDLGTDDDDKAMADIGSGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSRE 72
Query: 77 KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136
K PPI+ +I +G++P V L ++D +QFE+AWALTNIASGTS QT+ VV GA+P F
Sbjct: 73 KQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF 132
Query: 137 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---SFLR 192
+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+ +LR
Sbjct: 133 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 192
Query: 193 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252
N+TW + NLCRNK+P P + + ++LP L L+HH+D V
Sbjct: 193 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV-------------------- 232
Query: 253 SKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312
L D+ WA+SYLTDG N++I+MV+ GVVP L+ LL E+ + T +LRA+GNIVT
Sbjct: 233 -----LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 287
Query: 313 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 372
GTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SNITAG Q Q+Q V++ GL+P +
Sbjct: 288 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 347
Query: 373 IANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 431
+ L K Q EAAWA+TN S GT Q +V G + + LL + + +
Sbjct: 348 VGVLSKADF-----KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 402
Query: 432 EQAVWALGNII 442
+ + A+ NI
Sbjct: 403 QVILDAISNIF 413
Score = 265 bits (677), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 246/465 (52%), Gaps = 86/465 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 74 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 129
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 130 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 189
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 190 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 230
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 231 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 267
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 268 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 314
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 315 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 356
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 357 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 416
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YF
Sbjct: 417 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 181 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ--ILPTLVRLLHHND-PEVLADSC 237
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 238 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 297
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 298 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 353
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 354 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 388
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 389 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 448
Query: 341 ICKEAV 346
+ K ++
Sbjct: 449 VYKASL 454
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 339 bits (870), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 192/443 (43%), Positives = 268/443 (60%), Gaps = 40/443 (9%)
Query: 18 EETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAARKDNPELQLLAVQSARKL 72
+E + KRRNV A S +++ VN + +V+ +N E QL A Q+ARKL
Sbjct: 1 DEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 60
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
LS +K PPI+ +I +G++P V L ++D +QFE+AWALTNIASGTS QT+ VV GA
Sbjct: 61 LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 120
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI--- 188
+P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 121 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 180
Query: 189 SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D V
Sbjct: 181 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV---------------- 224
Query: 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVG 308
L D+ WA+SYLTDG N++I+MV+ GVVP L+ LL E+ + T +LRA+G
Sbjct: 225 ---------LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 275
Query: 309 NIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGL 368
NIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SNITAG Q Q+Q V++ GL
Sbjct: 276 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 335
Query: 369 LPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPH 427
+P ++ L K Q EAAWA+TN S GT Q +V G + + LL +
Sbjct: 336 VPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 390
Query: 428 SNVCEQAVWALGNIIGDGPQLRD 450
+ + + + A+ NI +L +
Sbjct: 391 TKIIQVILDAISNIFQAAEKLGE 413
Score = 265 bits (676), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 246/465 (52%), Gaps = 86/465 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 66 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 121
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 122 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 181
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 182 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 222
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 223 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 259
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 260 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 306
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 307 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 348
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 349 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 408
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YF
Sbjct: 409 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 173 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 229
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 230 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 289
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 290 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 345
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 346 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 380
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 381 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 440
Query: 341 ICKEAV 346
+ K ++
Sbjct: 441 VYKASL 446
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 187/433 (43%), Positives = 263/433 (60%), Gaps = 43/433 (9%)
Query: 23 KRRNVPLADSTDEDDIEKMAQVNLDML--------VVEAARKDNPELQLLAVQSARKLLS 74
+R+++ D +DD + MA + + +V+ +N E QL A Q+ARKLLS
Sbjct: 27 ERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLS 86
Query: 75 SDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134
+K PPI+ +I +G++P V L ++D +QFE+AWALTNIASGTS QT+ VV GA+P
Sbjct: 87 REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP 146
Query: 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---SF 190
F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+ +
Sbjct: 147 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 206
Query: 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250
LRN+TW + NLCRNK+P P + + ++LP L L+HH+D V
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV------------------ 248
Query: 251 LVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI 310
L D+ WA+SYLTDG N++I+MV+ GVVP L+ LL E+ + T +LRA+GNI
Sbjct: 249 -------LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 311 VTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP 370
VTGTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SNITAG Q Q+Q V++ GL+P
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 361
Query: 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
++ L K Q EAAWA+TN S GT Q +V G + + LL + +
Sbjct: 362 FLVGVLSKADF-----KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 430 VCEQAVWALGNII 442
+ + + A+ NI
Sbjct: 417 IIQVILDAISNIF 429
Score = 278 bits (712), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 261/499 (52%), Gaps = 88/499 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 90 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 145
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 246
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 247 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 283
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 330
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 331 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 372
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492
Query: 827 DGGFELDQNPSIPNEGFKF 845
GF P F F
Sbjct: 493 SEGFAFQVQDGAPGT-FNF 510
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ--ILPTLVRLLHHND-PEVLADSC 253
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 314 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 370 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 404
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 464
Query: 341 ICKEAV 346
+ K ++
Sbjct: 465 VYKASL 470
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 338 bits (867), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 187/433 (43%), Positives = 263/433 (60%), Gaps = 43/433 (9%)
Query: 23 KRRNVPLADSTDEDDIEKMAQVNLDML--------VVEAARKDNPELQLLAVQSARKLLS 74
+R+++ D +DD + MA + + +V+ +N E QL A Q+ARKLLS
Sbjct: 13 ERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLS 72
Query: 75 SDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134
+K PPI+ +I +G++P V L ++D +QFE+AWALTNIASGTS QT+ VV GA+P
Sbjct: 73 REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP 132
Query: 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---SF 190
F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+ +
Sbjct: 133 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 192
Query: 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250
LRN+TW + NLCRNK+P P + + ++LP L L+HH+D V
Sbjct: 193 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV------------------ 234
Query: 251 LVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI 310
L D+ WA+SYLTDG N++I+MV+ GVVP L+ LL E+ + T +LRA+GNI
Sbjct: 235 -------LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 311 VTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP 370
VTGTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SNITAG Q Q+Q V++ GL+P
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 347
Query: 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
++ L K Q EAAWA+TN S GT Q +V G + + LL + +
Sbjct: 348 FLVGVLSKADF-----KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 430 VCEQAVWALGNII 442
+ + + A+ NI
Sbjct: 403 IIQVILDAISNIF 415
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 261/499 (52%), Gaps = 88/499 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 76 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 131
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 132 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 191
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 192 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 232
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 233 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 269
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 270 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 316
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 317 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 358
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 359 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 418
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 419 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 478
Query: 827 DGGFELDQNPSIPNEGFKF 845
GF P F F
Sbjct: 479 SEGFAFQVQDGAPGT-FNF 496
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 183 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ--ILPTLVRLLHHND-PEVLADSC 239
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 240 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 299
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 300 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 355
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 356 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 390
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 391 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 450
Query: 341 ICKEAV 346
+ K ++
Sbjct: 451 VYKASL 456
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 337 bits (865), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 186/424 (43%), Positives = 260/424 (61%), Gaps = 44/424 (10%)
Query: 32 STDEDDIEKMAQVNLDML--------VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEA 83
TD+DD+ MA + + +V+ +N E QL A Q+ARKLLS +K PPI+
Sbjct: 37 GTDDDDL-AMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN 95
Query: 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 143
+I +G++P V L ++D +QFE+AWALTNIASGTS QT+ VV GA+P F+ LL SP
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---SFLRNVTWVIV 199
H+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+ +LRN+TW +
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215
Query: 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
NLCRNK+P P + + ++LP L L+HH+D ++L
Sbjct: 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-------------------------EVLA 250
Query: 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQ 319
D+ WA+SYLTDG N++I+MV+ GVVP L+ LL E+ + T +LRA+GNIVTGTDEQTQ
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379
+++ AL+ FP+LLT+PK I KEA W +SNITAG Q Q+Q V++ GL+P ++ L K
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370
Query: 380 GRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438
Q EAAWA+TN S GT Q +V G + + LL + + + + + A+
Sbjct: 371 DF-----KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425
Query: 439 GNII 442
NI
Sbjct: 426 SNIF 429
Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 174/494 (35%), Positives = 259/494 (52%), Gaps = 87/494 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 90 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 145
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 246
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 247 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 283
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 330
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 331 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 372
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492
Query: 827 DGGFELDQNPSIPN 840
GF P
Sbjct: 493 SEGFAFQVQDGAPG 506
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ--ILPTLVRLLHHND-PEVLADSC 253
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 314 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 370 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 404
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 464
Query: 341 ICKEAV 346
+ K ++
Sbjct: 465 VYKASL 470
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 337 bits (864), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 186/424 (43%), Positives = 260/424 (61%), Gaps = 44/424 (10%)
Query: 32 STDEDDIEKMAQVNLDML--------VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEA 83
TD+DD+ MA + + +V+ +N E QL A Q+ARKLLS +K PPI+
Sbjct: 37 GTDDDDL-AMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN 95
Query: 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 143
+I +G++P V L ++D +QFE+AWALTNIASGTS QT+ VV GA+P F+ LL SP
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 155
Query: 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---SFLRNVTWVIV 199
H+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+ +LRN+TW +
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215
Query: 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
NLCRNK+P P + + ++LP L L+HH+D ++L
Sbjct: 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-------------------------EVLA 250
Query: 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQ 319
D+ WA+SYLTDG N++I+MV+ GVVP L+ LL E+ + T +LRA+GNIVTGTDEQTQ
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 310
Query: 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379
+++ AL+ FP+LLT+PK I KEA W +SNITAG Q Q+Q V++ GL+P ++ L K
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370
Query: 380 GRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438
Q EAAWA+TN S GT Q +V G + + LL + + + + + A+
Sbjct: 371 DF-----KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425
Query: 439 GNII 442
NI
Sbjct: 426 SNIF 429
Score = 278 bits (710), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 261/499 (52%), Gaps = 88/499 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 90 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 145
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 246
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 247 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 283
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 330
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 331 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 372
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 492
Query: 827 DGGFELDQNPSIPNEGFKF 845
GF P F F
Sbjct: 493 SEGFAFQVQDGAPGT-FNF 510
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ--ILPTLVRLLHHND-PEVLADSC 253
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 314 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 370 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 404
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 464
Query: 341 ICKEAV 346
+ K ++
Sbjct: 465 VYKASL 470
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 336 bits (862), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 198 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 232
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 233 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 347
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 348 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 393
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 261/499 (52%), Gaps = 88/499 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 46 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 101
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 102 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 161
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 162 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 202
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 203 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 239
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 240 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 286
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 287 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 328
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 389 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 448
Query: 827 DGGFELDQNPSIPNEGFKF 845
GF P F F
Sbjct: 449 SEGFAFQVQDGAPGT-FNF 466
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 153 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ--ILPTLVRLLHHND-PEVLADSC 209
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 210 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 269
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 270 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 325
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 326 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 360
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 361 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 420
Query: 341 ICKEAV 346
+ K ++
Sbjct: 421 VYKASL 426
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 336 bits (862), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 251/406 (61%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ N E QL A Q+ARKLLS +K PPI+ +I +G++P V L R+D +QFE+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 170 INMGVVPPLLSFIK-PD---IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G V PLL+ + PD + +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH D ++L DT WA+SYLTDG N++I MV+ +GVV
Sbjct: 193 HHDDP-------------------------EVLADTCWAISYLTDGPNERIGMVVKTGVV 227
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQV+++ AL+ FP+LLT+PK I KEA
Sbjct: 228 PQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEA 287
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P +++ L K Q EA WA+TN S GT
Sbjct: 288 TWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADF-----KTQKEAVWAVTNYTSGGTV 342
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + A+ NI +L +
Sbjct: 343 EQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGE 388
Score = 273 bits (698), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/499 (34%), Positives = 257/499 (51%), Gaps = 88/499 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L GR P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 41 QPPIDNIIRAGLIPKFVSFL---GRTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 96
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PD---IPIS 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G V PLL+ + PD +
Sbjct: 97 PAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACG 156
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH D
Sbjct: 157 YLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDP------------------- 197
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ +++ + LL
Sbjct: 198 ------EVLADTCWAISY-----------------LTDGPNERIGMVVKTGVVPQLVKLL 234
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 235 GASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKT------------- 281
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 282 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVSVLSKADF 323
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEA WA++N T G +Q+ LV G+I P +LL+ KD ++I V+LD I+N+ + A
Sbjct: 324 KTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAA 383
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQNHEN +YK + +IE+YFS E+ED N+ P+ T
Sbjct: 384 EKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEEDQNVVPETT 443
Query: 827 DGGFELDQNPSIPNEGFKF 845
G+ P F F
Sbjct: 444 SEGYTFQVQDGAPGT-FNF 461
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 336 bits (861), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 192 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 226
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 227 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 286
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 287 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 341
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 342 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 387
Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/499 (35%), Positives = 261/499 (52%), Gaps = 88/499 (17%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 40 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 95
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 96 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 155
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 196
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 197 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 233
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 234 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 280
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 281 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 322
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 323 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVT 826
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT 442
Query: 827 DGGFELDQNPSIPNEGFKF 845
GF P F F
Sbjct: 443 SEGFAFQVQDGAPGT-FNF 460
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 203
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 204 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 263
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 264 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 319
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 320 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 354
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 355 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 414
Query: 341 ICKEAV 346
+ K ++
Sbjct: 415 VYKASL 420
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 336 bits (861), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 187 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 221
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 222 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 281
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 282 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 336
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 337 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 382
Score = 266 bits (680), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 247/466 (53%), Gaps = 86/466 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 35 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 90
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 91 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 150
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 151 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 191
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 192 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 228
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 229 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 275
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 276 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 317
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 318 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 423
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 198
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 199 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 258
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 259 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 314
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 315 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 349
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 350 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 409
Query: 341 ICKEAV 346
+ K ++
Sbjct: 410 VYKASL 415
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 336 bits (861), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 191 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 225
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 226 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 285
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 286 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 340
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 341 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 386
Score = 266 bits (680), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 247/466 (53%), Gaps = 86/466 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 39 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 94
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 95 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 154
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 155 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 195
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 196 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 232
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 233 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 279
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 280 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 321
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 322 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 427
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 202
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 203 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 262
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 263 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 318
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 319 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 353
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 354 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 413
Query: 341 ICKEAV 346
+ K ++
Sbjct: 414 VYKASL 419
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 336 bits (861), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 192 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 226
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 227 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 286
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 287 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 341
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 342 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 387
Score = 266 bits (680), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 165/466 (35%), Positives = 247/466 (53%), Gaps = 86/466 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 40 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 95
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 96 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 155
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 196
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 197 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 233
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 234 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 280
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 281 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 322
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 323 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 428
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 203
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 204 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 263
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 264 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 319
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 320 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 354
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 355 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 414
Query: 341 ICKEAV 346
+ K ++
Sbjct: 415 VYKASL 420
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 335 bits (860), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 192 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 226
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 227 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 286
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 287 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 341
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 342 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 387
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 246/465 (52%), Gaps = 86/465 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 40 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 95
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 96 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 155
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 196
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 197 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 233
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 234 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 280
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 281 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 322
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 323 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YF
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 147 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 203
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 204 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 263
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 264 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 319
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 320 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 354
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 355 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 414
Query: 341 ICKEAV 346
+ K ++
Sbjct: 415 VYKASL 420
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 335 bits (860), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 191 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 225
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 226 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 285
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 286 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 340
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 341 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 386
Score = 264 bits (675), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 246/465 (52%), Gaps = 86/465 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 39 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 94
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 95 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 154
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 155 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 195
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 196 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 232
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 233 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 279
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 280 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 321
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 322 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YF
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 146 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 202
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 203 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 262
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 263 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 318
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 319 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 353
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 354 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 413
Query: 341 ICKEAV 346
+ K ++
Sbjct: 414 VYKASL 419
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 335 bits (860), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 170 INMGVVPPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D V L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 187 HHNDPEV-------------------------LADSCWAISYLTDGPNERIEMVVKKGVV 221
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 222 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 281
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 282 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTV 336
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 337 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 382
Score = 264 bits (674), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 246/465 (52%), Gaps = 86/465 (18%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
Q + +I AGL+PK ++ L G+ P +QFE+AWALTNIASGTS QT+ VV GA+
Sbjct: 35 QPPIDNIIRAGLIPKFVSFL---GKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAI 90
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPI---S 472
P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + PD+
Sbjct: 91 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 150
Query: 473 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 532
+LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 151 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------------------- 191
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+V + + +S+ ++ G +E+ ++++ + LL
Sbjct: 192 ------EVLADSCWAISY-----------------LTDGPNERIEMVVKKGVVPQLVKLL 228
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL---PKIIANLQKRSCKILNKYLDNN 649
+ I A+ + NI G Q Q VIDAG L P ++ N +
Sbjct: 229 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT------------- 275
Query: 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEF 709
N+ + + + N+ ++ ++ +V G + F + + +F
Sbjct: 276 -----NIQKEATWTMSNI------TAGRQDQIQQVVNHG-------LVPFLVGVLSKADF 317
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
+TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A
Sbjct: 318 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 377
Query: 770 D--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812
+ + E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YF
Sbjct: 378 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 131/306 (42%), Gaps = 50/306 (16%)
Query: 59 PELQLLAVQSARKL------LSSDKNP--PIEALIHSGILPVLVECLERSDRPNLQFEAA 110
P+L LA R L L +KNP P++A+ ILP LV L +D P + ++
Sbjct: 142 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV--EQILPTLVRLLHHND-PEVLADSC 198
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WA++ + G + + + VV G VP ++LL + + A+ A+GNI+ + VI
Sbjct: 199 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 258
Query: 171 NMG---VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227
+ G V P LL+ K +I + TW + N+ + L+P L ++
Sbjct: 259 DAGALAVFPSLLTNPKTNIQ----KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 314
Query: 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVP 286
D K + WA++ T GG +QI ++ G++
Sbjct: 315 AD-------------------------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 349
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTG------TDEQTQVILNCDALSHFPALLTHPKEK 340
L+ LLS K+ K+ L A+ NI T++ + +I C L AL H E
Sbjct: 350 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES 409
Query: 341 ICKEAV 346
+ K ++
Sbjct: 410 VYKASL 415
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 318 bits (814), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 196/456 (42%), Positives = 261/456 (57%), Gaps = 50/456 (10%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRN--------VPLADSTDEDDIEKMAQVNLDML--VV 51
RRRR + VE+RK++REE+L K+R VP + +T D L+ L ++
Sbjct: 28 RRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDK-------KLESLPAMI 80
Query: 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAW 111
D+ LQL A RKLLS +++PPIE +I SG++P V+ L R D P LQFEAAW
Sbjct: 81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAW 140
Query: 112 ALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN 171
ALTNIASGTS T+ V+ GAVP+F++LL S +V EQAVWALGN+ GD P+ RD V+
Sbjct: 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA 200
Query: 172 MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231
G + PLL+ + +S LRN TW + N CR K P PS LPAL LIH +D
Sbjct: 201 NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEE 259
Query: 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291
V L D WALSYL+DG ND+IQ VI++GV P L+ L
Sbjct: 260 V-------------------------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294
Query: 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP-KEKICKEAVWFLS 350
L H V +LR VGNIVTG D QTQ I++ AL +LLT K+ I KEA W +S
Sbjct: 295 LLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354
Query: 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS-AQTQE 409
NITAGN+ Q+QAVI+AG++ ++ LQ +++ EAAWA++N SG S Q +
Sbjct: 355 NITAGNKDQIQAVINAGIIGPLVNLLQTA-----EFDIKKEAAWAISNATSGGSHDQIKY 409
Query: 410 VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
+V+ G + LL+ P + + L NI+ G
Sbjct: 410 LVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445
Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 230/470 (48%), Gaps = 82/470 (17%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419
++ VI +G++P+ + L + P LQFEAAWALTNIASGTS T+ V+ GAVP+F
Sbjct: 110 IEEVIQSGVVPRFVQFLTREDF----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165
Query: 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 479
++LL S +V EQAVWALGN+ GD P+ RD V+ G + PLL+ + +S LRN TW
Sbjct: 166 VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225
Query: 480 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 539
+ N CR K P PS LPAL LIH +D +
Sbjct: 226 TLSNFCRGK-PQPSFEQTRPALPALARLIHSNDE-------------------------E 259
Query: 540 VCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKI 599
V + + LS+ +S GT+++ Q ++ LL HP +
Sbjct: 260 VLTDACWALSY-----------------LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 302
Query: 600 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQ 659
A+ + NI G+ AQ Q +ID LP +++ L + K + K + N+
Sbjct: 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKK---EACWTISNITAG 359
Query: 660 MSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAI 719
+Q V I PL + EF +KEAAWAI
Sbjct: 360 NKDQIQAVINAGIIG------PL------------------VNLLQTAEFDIKKEAAWAI 395
Query: 720 SNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLK-------MADAQ 772
SN T G+ DQ+ LV EG I P CDLL C D +++ V L+G+ N+LK +A
Sbjct: 396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD 455
Query: 773 VETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDNLG 822
V + MI+E GL+KIE LQ+H+N EIY+ A I+E Y+ + ED D +G
Sbjct: 456 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED-DTMG 504
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 125/284 (44%), Gaps = 37/284 (13%)
Query: 498 IELLPALNILIHHHDTSVSI-----YLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNS 552
+E LPA+ ++ D ++ + + L IE++P I +++ S V R++ +L+
Sbjct: 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSG--VVPRFVQFLTRED 130
Query: 553 GPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
P Q + ++ GT E T+V+++ A+ F LL + + ++AVW L N+
Sbjct: 131 FPQ-LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG 189
Query: 613 GNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMI 672
+ V+ G L ++A L + + +L N +S F + +
Sbjct: 190 DSPKCRDLVLANGALLPLLAQLNEHT----------KLSMLRNATWTLSNFCRGKPQ--- 236
Query: 673 YSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVA 732
SF++T P A + +L+ E T +A WA+S L+ G D++
Sbjct: 237 -PSFEQTRP------------ALPALARLIHSNDEEVLT--DACWALSYLS-DGTNDKIQ 280
Query: 733 KLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETL 776
+++ GV P +LL V+ L + N++ DAQ + +
Sbjct: 281 AVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 317 bits (811), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 191/460 (41%), Positives = 258/460 (56%), Gaps = 47/460 (10%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRN-VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNP 59
+RRRR+ VELRK KR+E L KRRN +P D D D+ E + V+ D +++ P
Sbjct: 32 LRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDE-EDESSVSADQQFYSQLQQELP 90
Query: 60 EL-----------QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
++ QL A R++LS + PPI+ +I +G++P LVE + + LQ E
Sbjct: 91 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 150
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168
AAWALTNIASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDY
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210
Query: 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 228
V+ + P+L + P S +R TW + NLCR K P P S + + LP L LI+
Sbjct: 211 VLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 229 DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288
DT + LVD WA+SYL+DG + IQ VID + L
Sbjct: 270 DT-------------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304
Query: 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348
+ LLSH+ VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W
Sbjct: 305 VELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT 364
Query: 349 LSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ-- 406
+SNITAGN Q+QAVIDA L+P ++ L+ V + EA WA++N +SG +
Sbjct: 365 ISNITAGNTEQIQAVIDANLIPPLVKLLE-----VAEYKTKKEACWAISNASSGGLQRPD 419
Query: 407 -TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
+ +V+ G + LL + + E + AL NI+ G
Sbjct: 420 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 227/493 (46%), Gaps = 108/493 (21%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPN----LQFEAAWALTNIASGTSAQTQEVVAAGA 415
+ VI AG++P+++ +R N LQ EAAWALTNIASGTSAQT+ VV A A
Sbjct: 123 IDVVIQAGVVPRLVE--------FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
VPLF++LL + V EQA+WALGN+ GD RDYV+ + P+L + P S +R
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIR 233
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 535
TW + NLCR K P P S + + LP L LI+ DT + +I
Sbjct: 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI------------ 281
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595
YLS G E Q +++ LL+H
Sbjct: 282 ----------SYLSD--------------------GPQEAIQAVIDVRIPKRLVELLSHE 311
Query: 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI-------IANLQKRSCKILNKYLDN 648
+ A+ + NI GN Q Q VI+AG+LP + N++K +C ++
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
N + V ++ +I PL + E
Sbjct: 372 NTEQIQAV----------IDANLI-------PPL------------------VKLLEVAE 396
Query: 709 FQTQKEAAWAISNLTISG--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
++T+KEA WAISN + G D + LV +G I P CDLL D ++I+V LD + N+L
Sbjct: 397 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456
Query: 767 KMADAQVETL-------ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVED-- 817
KM +A E A+ IE+ GG++KI Q +EN +IY+ AY IIE YF E ED
Sbjct: 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 516
Query: 818 EDNLGPQVTDGGF 830
++ + PQ F
Sbjct: 517 DETMAPQNAGNTF 529
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 311 bits (798), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 185/400 (46%), Positives = 237/400 (59%), Gaps = 32/400 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLERSDRPNLQFE 108
++E +PE QL A Q RKLLS + NPPI+ +I + G++ VE L+R + LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168
+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +V EQAVWALGNI GD RDY
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 228
V++ ++PPLL ++ RN W + NLCR K PPP + + P LN+L
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS---PCLNVLS--- 195
Query: 229 DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288
WL + VS +L D WALSYL+DG ND+IQ VID+GV L
Sbjct: 196 --------WL-----------LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236
Query: 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348
+ LL H + KV + +LRAVGNIVTG D QTQVILNC AL LL+ PKE I KEA W
Sbjct: 237 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 296
Query: 349 LSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA-QT 407
+SNITAGN+AQ+Q VIDA + P +I+ LQ + EAAWA+TN SG SA Q
Sbjct: 297 ISNITAGNRAQIQTVIDANIFPALISILQTA-----EFRTRKEAAWAITNATSGGSAEQI 351
Query: 408 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ 447
+ +V G + LL S + + A+ L NI+ G Q
Sbjct: 352 KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 391
Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 227/467 (48%), Gaps = 96/467 (20%)
Query: 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
P ++A + + LQFE+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +
Sbjct: 60 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 119
Query: 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489
V EQAVWALGNI GD RDYV++ ++PPLL ++ RN W + NLCR K
Sbjct: 120 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 179
Query: 490 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLS 549
PPP + + P LN+L WL + VS V + + LS
Sbjct: 180 PPPEFAKVS---PCLNVLS-----------WL-----------LFVSDTDVLADACWALS 214
Query: 550 HNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609
+ +S G +++ Q +++ LL H K+ A+ + N
Sbjct: 215 Y-----------------LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 610 ITAGNQAQVQAVIDAGLL---------PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQM 660
I G+ Q Q +++ L PK +++K +C ++ N + V+
Sbjct: 258 IVTGDDIQTQVILNCSALQSLLHLLSSPK--ESIKKEACWTISNITAGNRAQIQTVI-DA 314
Query: 661 SVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAIS 720
++F A IS Q EF+T+KEAAWAI+
Sbjct: 315 NIFP-----------------------------ALISILQ-----TAEFRTRKEAAWAIT 340
Query: 721 NLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ-------V 773
N T G+ +Q+ LV+ G I P CDLL+ D++++QV L+G+ N+L++ + + +
Sbjct: 341 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI 400
Query: 774 ETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDN 820
+IEE GLDKIE LQ+HEN EIY+ A+D+IE YF EDED+
Sbjct: 401 NPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG-TEDEDS 446
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 32/255 (12%)
Query: 525 EKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDA 584
E NP I ++ +S V +R++ +L + Q + + ++ G QT++++ A
Sbjct: 48 EPNPPIDEV-ISTPGVVARFVEFLKRKEN-CTLQFESAWVLTNIASGNSLQTRIVIQAGA 105
Query: 585 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNK 644
+ F LL+ E + ++AVW L NI + V+D +LP ++ K+
Sbjct: 106 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ------- 158
Query: 645 YLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSP-LRVAATGGFTLFAFISRFQLMF 703
N + N + +S + + F K SP L V + F+S ++
Sbjct: 159 ---NRLTMTRNAVWALSNLCRG---KSPPPEFAKVSPCLNV-----LSWLLFVSDTDVL- 206
Query: 704 FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGIN 763
+A WA+S L+ G D++ ++ GV +LL D +V+ L +
Sbjct: 207 ---------ADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 256
Query: 764 NMLKMADAQVETLAN 778
N++ D Q + + N
Sbjct: 257 NIVTGDDIQTQVILN 271
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 311 bits (798), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 185/400 (46%), Positives = 237/400 (59%), Gaps = 32/400 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLERSDRPNLQFE 108
++E +PE QL A Q RKLLS + NPPI+ +I + G++ VE L+R + LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168
+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +V EQAVWALGNI GD RDY
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 228
V++ ++PPLL ++ RN W + NLCR K PPP + + P LN+L
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS---PCLNVLS--- 198
Query: 229 DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288
WL + VS +L D WALSYL+DG ND+IQ VID+GV L
Sbjct: 199 --------WL-----------LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Query: 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348
+ LL H + KV + +LRAVGNIVTG D QTQVILNC AL LL+ PKE I KEA W
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299
Query: 349 LSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA-QT 407
+SNITAGN+AQ+Q VIDA + P +I+ LQ + EAAWA+TN SG SA Q
Sbjct: 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-----EFRTRKEAAWAITNATSGGSAEQI 354
Query: 408 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ 447
+ +V G + LL S + + A+ L NI+ G Q
Sbjct: 355 KYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394
Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 227/467 (48%), Gaps = 96/467 (20%)
Query: 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
P ++A + + LQFE+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489
V EQAVWALGNI GD RDYV++ ++PPLL ++ RN W + NLCR K
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182
Query: 490 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLS 549
PPP + + P LN+L WL + VS V + + LS
Sbjct: 183 PPPEFAKVS---PCLNVLS-----------WL-----------LFVSDTDVLADACWALS 217
Query: 550 HNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609
+ +S G +++ Q +++ LL H K+ A+ + N
Sbjct: 218 Y-----------------LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 610 ITAGNQAQVQAVIDAGLL---------PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQM 660
I G+ Q Q +++ L PK +++K +C ++ N + V+
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSPK--ESIKKEACWTISNITAGNRAQIQTVI-DA 317
Query: 661 SVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAIS 720
++F A IS Q EF+T+KEAAWAI+
Sbjct: 318 NIFP-----------------------------ALISILQ-----TAEFRTRKEAAWAIT 343
Query: 721 NLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ-------V 773
N T G+ +Q+ LV+ G I P CDLL+ D++++QV L+G+ N+L++ + + +
Sbjct: 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI 403
Query: 774 ETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDN 820
+IEE GLDKIE LQ+HEN EIY+ A+D+IE YF EDED+
Sbjct: 404 NPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG-TEDEDS 449
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 108/255 (42%), Gaps = 32/255 (12%)
Query: 525 EKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDA 584
E NP I ++ +S V +R++ +L + Q + + ++ G QT++++ A
Sbjct: 51 EPNPPIDEV-ISTPGVVARFVEFLKRKEN-CTLQFESAWVLTNIASGNSLQTRIVIQAGA 108
Query: 585 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNK 644
+ F LL+ E + ++AVW L NI + V+D +LP ++ K+
Sbjct: 109 VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ------- 161
Query: 645 YLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSP-LRVAATGGFTLFAFISRFQLMF 703
N + N + +S + + F K SP L V + F+S ++
Sbjct: 162 ---NRLTMTRNAVWALSNLCRG---KSPPPEFAKVSPCLNV-----LSWLLFVSDTDVL- 209
Query: 704 FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGIN 763
+A WA+S L+ G D++ ++ GV +LL D +V+ L +
Sbjct: 210 ---------ADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259
Query: 764 NMLKMADAQVETLAN 778
N++ D Q + + N
Sbjct: 260 NIVTGDDIQTQVILN 274
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 246/426 (57%), Gaps = 34/426 (7%)
Query: 23 KRRNVPLADSTDEDDIEKMAQVNLDM-LVVEAARKDNPELQLLAVQSARKLLSSDKNPPI 81
+R+++ D +DD + MA + + ++ D+ LQL A RKLLS +++PPI
Sbjct: 13 ERQHMDSPDLGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPI 72
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
E +I SG++P V+ L R D P LQFEAAWALTNIASGTS T+ V+ GAVP+F++LL
Sbjct: 73 EEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG 132
Query: 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
S +V EQAVWALGN+ GD P+ RD V+ G + PLL+ + +S LRN TW + N
Sbjct: 133 SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 192
Query: 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261
CR K P PS LPAL LIH +D V L D
Sbjct: 193 CRGK-PQPSFEQTRPALPALARLIHSNDEEV-------------------------LTDA 226
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321
WALSYL+DG ND+IQ VI++GV P L+ LL H V +LR VGNIVTG D QTQ I
Sbjct: 227 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 286
Query: 322 LNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVG 380
++ AL +LLT K+ I KEA W +SNITAGN+ Q+QAVI+AG++ ++ LQ
Sbjct: 287 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA- 345
Query: 381 RIVLRPNLQFEAAWALTNIASGTS-AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439
+++ EAAWA++N SG S Q + +V+ G + LL+ P + + L
Sbjct: 346 ----EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLE 401
Query: 440 NIIGDG 445
NI+ G
Sbjct: 402 NILKVG 407
Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 163/470 (34%), Positives = 230/470 (48%), Gaps = 82/470 (17%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419
++ VI +G++P+ + L + P LQFEAAWALTNIASGTS T+ V+ GAVP+F
Sbjct: 72 IEEVIQSGVVPRFVQFLTREDF----PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 127
Query: 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 479
++LL S +V EQAVWALGN+ GD P+ RD V+ G + PLL+ + +S LRN TW
Sbjct: 128 VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 187
Query: 480 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 539
+ N CR K P PS LPAL LIH +D +
Sbjct: 188 TLSNFCRGK-PQPSFEQTRPALPALARLIHSNDE-------------------------E 221
Query: 540 VCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKI 599
V + + LS+ +S GT+++ Q ++ LL HP +
Sbjct: 222 VLTDACWALSY-----------------LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSV 264
Query: 600 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQ 659
A+ + NI G+ AQ Q +ID LP +++ L + K + K + N+
Sbjct: 265 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKK---EACWTISNITAG 321
Query: 660 MSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAI 719
+Q V I PL + EF +KEAAWAI
Sbjct: 322 NKDQIQAVINAGIIG------PL------------------VNLLQTAEFDIKKEAAWAI 357
Query: 720 SNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLK-------MADAQ 772
SN T G+ DQ+ LV EG I P CDLL C D +++ V L+G+ N+LK +A
Sbjct: 358 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGD 417
Query: 773 VETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDNLG 822
V + MI+E GL+KIE LQ+H+N EIY+ A I+E Y+ + ED D +G
Sbjct: 418 VNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED-DTMG 466
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 37/293 (12%)
Query: 489 DPPPSMSTIIELLPALNILIHHHDTSVSI-----YLWLSIIEKNPQISKILVSKMKVCSR 543
D +M+ I LPA+ ++ D ++ + + L IE++P I +++ S V R
Sbjct: 26 DDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSG--VVPR 83
Query: 544 YLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 603
++ +L+ P Q + ++ GT E T+V+++ A+ F LL + + ++A
Sbjct: 84 FVQFLTREDFPQ-LQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 142
Query: 604 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVF 663
VW L N+ + V+ G L ++A L + + +L N +S F
Sbjct: 143 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT----------KLSMLRNATWTLSNF 192
Query: 664 LQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723
+ + SF++T P A + +L+ E T +A WA+S L+
Sbjct: 193 CRGKPQ----PSFEQTRP------------ALPALARLIHSNDEEVLT--DACWALSYLS 234
Query: 724 ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETL 776
G D++ +++ GV P +LL V+ L + N++ DAQ + +
Sbjct: 235 -DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 286
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 224/392 (57%), Gaps = 34/392 (8%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EAAWALTNI
Sbjct: 13 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 72
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV+ +
Sbjct: 73 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 132
Query: 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236
P+L + P S +R TW + NLCR K P P S + + LP L LI+ DT
Sbjct: 133 PILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT------ 185
Query: 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296
+ LVD WA+SYL+DG + IQ VID + L+ LLSH+
Sbjct: 186 -------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 226
Query: 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356
VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +SNITAGN
Sbjct: 227 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 286
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAA 413
Q+QAVIDA L+P ++ L+ V + EA WA++N +SG + + +V+
Sbjct: 287 TEQIQAVIDANLIPPLVKLLE-----VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 341
Query: 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
G + LL + + E + AL NI+ G
Sbjct: 342 GCIKPLCDLLEIADNRIIEVTLDALENILKMG 373
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 154/473 (32%), Positives = 217/473 (45%), Gaps = 106/473 (22%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPN----LQFEAAWALTNIASGTSAQTQEVVAAGA 415
+ VI AG++P+++ +R N LQ EAAWALTNIASGTSAQT+ VV A A
Sbjct: 37 IDVVIQAGVVPRLVE--------FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
VPLF++LL + V EQA+WALGN+ GD RDYV+ + P+L + P S +R
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIR 147
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 535
TW + NLCR K P P S + + LP L LI+ DT +
Sbjct: 148 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV------------------ 189
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595
C Y +S G E Q +++ LL+H
Sbjct: 190 ---DACWAISY---------------------LSDGPQEAIQAVIDVRIPKRLVELLSHE 225
Query: 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI-------IANLQKRSCKILNKYLDN 648
+ A+ + NI GN Q Q VI+AG+LP + N++K +C ++
Sbjct: 226 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 285
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
N + V ++ +I PL + E
Sbjct: 286 NTEQIQAV----------IDANLI-------PPL------------------VKLLEVAE 310
Query: 709 FQTQKEAAWAISNLTISGNR--DQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
+T+KEA WAISN + G + D + LV +G I P CDLL D ++I+V LD + N+L
Sbjct: 311 DKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 370
Query: 767 KMADAQVETL-------ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812
KM +A E A+ IE+ GG++KI Q +EN +IY+ AY IIE YF
Sbjct: 371 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 168/392 (42%), Positives = 224/392 (57%), Gaps = 34/392 (8%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EAAWALTNI
Sbjct: 11 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 70
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV+ +
Sbjct: 71 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 130
Query: 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236
P+L + P S +R TW + NLCR K P P S + + LP L LI+ DT
Sbjct: 131 PILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT------ 183
Query: 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296
+ LVD WA+SYL+DG + IQ VID + L+ LLSH+
Sbjct: 184 -------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 224
Query: 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356
VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +SNITAGN
Sbjct: 225 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 284
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAA 413
Q+QAVIDA L+P ++ L+ V + EA WA++N +SG + + +V+
Sbjct: 285 TEQIQAVIDANLIPPLVKLLE-----VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 339
Query: 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
G + LL + + E + AL NII G
Sbjct: 340 GCIKPLCDLLEIADNRIIEVTLDALENIIKMG 371
Score = 218 bits (556), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 153/474 (32%), Positives = 218/474 (45%), Gaps = 106/474 (22%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPN----LQFEAAWALTNIASGTSAQTQEVVAAGA 415
+ VI AG++P+++ +R N LQ EAAWALTNIASGTSAQT+ VV A A
Sbjct: 35 IDVVIQAGVVPRLVE--------FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
VPLF++LL + V EQA+WALGN+ GD RDYV+ + P+L + P S +R
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIR 145
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 535
TW + NLCR K P P S + + LP L LI+ DT +
Sbjct: 146 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV------------------ 187
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595
C Y +S G E Q +++ LL+H
Sbjct: 188 ---DACWAISY---------------------LSDGPQEAIQAVIDVRIPKRLVELLSHE 223
Query: 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI-------IANLQKRSCKILNKYLDN 648
+ A+ + NI GN Q Q VI+AG+LP + N++K +C ++
Sbjct: 224 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 283
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
N + V ++ +I PL + E
Sbjct: 284 NTEQIQAV----------IDANLI-------PPL------------------VKLLEVAE 308
Query: 709 FQTQKEAAWAISNLTISGNR--DQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
++T+KEA WAISN + G + D + LV +G I P CDLL D ++I+V LD + N++
Sbjct: 309 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENII 368
Query: 767 KMADAQVETL-------ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
KM +A E A+ IE+ GG++KI Q +EN +IY+ AY IIE YF
Sbjct: 369 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 422
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 31/323 (9%)
Query: 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 226
D VI GVVP L+ F++ + P W + N+ + + +P L++
Sbjct: 36 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 95
Query: 227 HHDTSVS-IYLW----------------LSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
V +W L P + +K ++ W LS L
Sbjct: 96 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 155
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329
G Q + S +P+L L+ + + + A+ + G E Q +++
Sbjct: 156 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 215
Query: 330 FPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL---RP 386
LL+H + A+ + NI GN Q Q VI+AG+LP + R++L +
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL--------RLLLSSPKE 267
Query: 387 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446
N++ EA W ++NI +G + Q Q V+ A +P ++LL ++A WA+ N G
Sbjct: 268 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 327
Query: 447 QLRD---YVINMGVVPPLLSFIK 466
Q D Y+++ G + PL ++
Sbjct: 328 QRPDIIRYLVSQGCIKPLCDLLE 350
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 285 bits (730), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 224/392 (57%), Gaps = 34/392 (8%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EAAWALTNI
Sbjct: 13 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 72
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV+ +
Sbjct: 73 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 132
Query: 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236
P+L + P S +R TW + NLCR K P P S + + LP L LI+ DT
Sbjct: 133 PILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT------ 185
Query: 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296
+ LVD WA+SYL+DG + IQ VID + L+ LLSH+
Sbjct: 186 -------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 226
Query: 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356
VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +SNITAGN
Sbjct: 227 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 286
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAA 413
Q+QAVIDA L+P ++ L+ V + EA WA++N +SG + + +V+
Sbjct: 287 TEQIQAVIDANLIPPLVKLLE-----VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 341
Query: 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
G + LL + + E + AL NI+ G
Sbjct: 342 GCIKPLCDLLEIADNRIIEVTLDALENILKMG 373
Score = 217 bits (552), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 154/474 (32%), Positives = 216/474 (45%), Gaps = 106/474 (22%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPN----LQFEAAWALTNIASGTSAQTQEVVAAGA 415
+ VI AG++P+++ +R N LQ EAAWALTNIASGTSAQT+ VV A A
Sbjct: 37 IDVVIQAGVVPRLVE--------FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 88
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
VPLF++LL + V EQA+WALGN+ GD RDYV+ + P+L + P S +R
Sbjct: 89 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIR 147
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 535
TW + NLCR K P P S + + LP L LI+ DT +
Sbjct: 148 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV------------------ 189
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595
C Y +S G E Q +++ LL+H
Sbjct: 190 ---DACWAISY---------------------LSDGPQEAIQAVIDVRIPKRLVELLSHE 225
Query: 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI-------IANLQKRSCKILNKYLDN 648
+ A+ + NI GN Q Q VI+AG+LP + N++K +C ++
Sbjct: 226 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 285
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
N + V ++ +I PL + E
Sbjct: 286 NTEQIQAV----------IDANLI-------PPL------------------VKLLEVAE 310
Query: 709 FQTQKEAAWAISNLTISG--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
+T+KEA WAISN + G D + LV +G I P CDLL D ++I+V LD + N+L
Sbjct: 311 DKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 370
Query: 767 KMADAQVETL-------ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
KM +A E A+ IE+ GG++KI Q +EN +IY+ AY IIE YF
Sbjct: 371 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 424
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 285 bits (730), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 224/392 (57%), Gaps = 34/392 (8%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EAAWALTNI
Sbjct: 12 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 71
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV+ +
Sbjct: 72 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 131
Query: 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236
P+L + P S +R TW + NLCR K P P S + + LP L LI+ DT
Sbjct: 132 PILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT------ 184
Query: 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296
+ LVD WA+SYL+DG + IQ VID + L+ LLSH+
Sbjct: 185 -------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 225
Query: 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356
VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +SNITAGN
Sbjct: 226 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 285
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAA 413
Q+QAVIDA L+P ++ L+ V + EA WA++N +SG + + +V+
Sbjct: 286 TEQIQAVIDANLIPPLVKLLE-----VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 340
Query: 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
G + LL + + E + AL NI+ G
Sbjct: 341 GCIKPLCDLLEIADNRIIEVTLDALENILKMG 372
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 160/493 (32%), Positives = 225/493 (45%), Gaps = 108/493 (21%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPN----LQFEAAWALTNIASGTSAQTQEVVAAGA 415
+ VI AG++P+++ +R N LQ EAAWALTNIASGTSAQT+ VV A A
Sbjct: 36 IDVVIQAGVVPRLVE--------FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 87
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
VPLF++LL + V EQA+WALGN+ GD RDYV+ + P+L + P S +R
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIR 146
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 535
TW + NLCR K P P S + + LP L LI+ DT +
Sbjct: 147 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV------------------ 188
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595
C Y +S G E Q +++ LL+H
Sbjct: 189 ---DACWAISY---------------------LSDGPQEAIQAVIDVRIPKRLVELLSHE 224
Query: 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI-------IANLQKRSCKILNKYLDN 648
+ A+ + NI GN Q Q VI+AG+LP + N++K +C ++
Sbjct: 225 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 284
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
N + V ++ +I PL + E
Sbjct: 285 NTEQIQAV----------IDANLI-------PPL------------------VKLLEVAE 309
Query: 709 FQTQKEAAWAISNLTISG--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
+T+KEA WAISN + G D + LV +G I P CDLL D ++I+V LD + N+L
Sbjct: 310 DKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 369
Query: 767 KMADAQVETL-------ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVED-- 817
KM +A E A+ IE+ GG++KI Q +EN +IY+ AY IIE YF E ED
Sbjct: 370 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 429
Query: 818 EDNLGPQVTDGGF 830
++ + PQ F
Sbjct: 430 DETMAPQNAGNTF 442
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 285 bits (729), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 224/392 (57%), Gaps = 34/392 (8%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EAAWALTNI
Sbjct: 12 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 71
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV+ +
Sbjct: 72 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 131
Query: 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236
P+L + P S +R TW + NLCR K P P S + + LP L LI+ DT
Sbjct: 132 PILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT------ 184
Query: 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296
+ LVD WA+SYL+DG + IQ VID + L+ LLSH+
Sbjct: 185 -------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 225
Query: 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356
VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +SNITAGN
Sbjct: 226 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 285
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAA 413
Q+QAVIDA L+P ++ L+ V + EA WA++N +SG + + +V+
Sbjct: 286 TEQIQAVIDANLIPPLVKLLE-----VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQ 340
Query: 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
G + LL + + E + AL NI+ G
Sbjct: 341 GCIKPLCDLLEIADNRIIEVTLDALENILKMG 372
Score = 226 bits (576), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 164/508 (32%), Positives = 230/508 (45%), Gaps = 111/508 (21%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPN----LQFEAAWALTNIASGTSAQTQEVVAAGA 415
+ VI AG++P+++ +R N LQ EAAWALTNIASGTSAQT+ VV A A
Sbjct: 36 IDVVIQAGVVPRLVE--------FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 87
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
VPLF++LL + V EQA+WALGN+ GD RDYV+ + P+L + P S +R
Sbjct: 88 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIR 146
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 535
TW + NLCR K P P S + + LP L LI+ DT +
Sbjct: 147 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV------------------ 188
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595
C Y +S G E Q +++ LL+H
Sbjct: 189 ---DACWAISY---------------------LSDGPQEAIQAVIDVRIPKRLVELLSHE 224
Query: 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI-------IANLQKRSCKILNKYLDN 648
+ A+ + NI GN Q Q VI+AG+LP + N++K +C ++
Sbjct: 225 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 284
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
N + V ++ +I PL + E
Sbjct: 285 NTEQIQAV----------IDANLI-------PPL------------------VKLLEVAE 309
Query: 709 FQTQKEAAWAISNLTISG--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
+T+KEA WAISN + G D + LV +G I P CDLL D ++I+V LD + N+L
Sbjct: 310 DKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 369
Query: 767 KMADAQVETL-------ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVED-- 817
KM +A E A+ IE+ GG++KI Q +EN +IY+ AY IIE YF E ED
Sbjct: 370 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 429
Query: 818 EDNLGPQVTDGGFELDQNPSIPNEGFKF 845
++ + PQ F N N+ F F
Sbjct: 430 DETMAPQNAGNTFGFGSN---VNQQFNF 454
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 167/392 (42%), Positives = 224/392 (57%), Gaps = 34/392 (8%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EAAWALTNI
Sbjct: 11 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNI 70
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV+ +
Sbjct: 71 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 130
Query: 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236
P+L + P S +R TW + NLCR K P P S + + LP L LI+ DT
Sbjct: 131 PILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT------ 183
Query: 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296
+ LVD WA+SYL+DG + IQ VID + L+ LLSH+
Sbjct: 184 -------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 224
Query: 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356
VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +SNITAGN
Sbjct: 225 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 284
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAA 413
Q+QAVIDA L+P ++ L+ V + EA WA++N +SG + + +V+
Sbjct: 285 TEQIQAVIDANLIPPLVKLLE-----VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQ 339
Query: 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
G + LL + + E + AL NI+ G
Sbjct: 340 GCIKPLCDLLEIADNRIIEVTLDALENILKMG 371
Score = 219 bits (557), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 154/474 (32%), Positives = 218/474 (45%), Gaps = 106/474 (22%)
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPN----LQFEAAWALTNIASGTSAQTQEVVAAGA 415
+ VI AG++P+++ +R N LQ EAAWALTNIASGTSAQT+ VV A A
Sbjct: 35 IDVVIQAGVVPRLVE--------FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 86
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
VPLF++LL + V EQA+WALGN+ GD RDYV+ + P+L + P S +R
Sbjct: 87 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIR 145
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 535
TW + NLCR K P P S + + LP L LI+ DT +
Sbjct: 146 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV------------------ 187
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595
C Y +S G E Q +++ LL+H
Sbjct: 188 ---DACWAISY---------------------LSDGPQEAIQAVIDVRIPKRLVELLSHE 223
Query: 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI-------IANLQKRSCKILNKYLDN 648
+ A+ + NI GN Q Q VI+AG+LP + N++K +C ++
Sbjct: 224 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 283
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
N + V ++ +I PL + E
Sbjct: 284 NTEQIQAV----------IDANLI-------PPL------------------VKLLEVAE 308
Query: 709 FQTQKEAAWAISNLTISGNR--DQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
++T+KEA WAISN + G + D + LV +G I P CDLL D ++I+V LD + N+L
Sbjct: 309 YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 368
Query: 767 KMADAQVETL-------ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
KM +A E A+ IE+ GG++KI Q +EN +IY+ AY IIE YF
Sbjct: 369 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 422
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 133/323 (41%), Gaps = 31/323 (9%)
Query: 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 226
D VI GVVP L+ F++ + P W + N+ + + +P L++
Sbjct: 36 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 95
Query: 227 HHDTSVS-IYLW----------------LSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
V +W L P + +K ++ W LS L
Sbjct: 96 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 155
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329
G Q + S +P+L L+ + + + A+ + G E Q +++
Sbjct: 156 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 215
Query: 330 FPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL---RP 386
LL+H + A+ + NI GN Q Q VI+AG+LP + R++L +
Sbjct: 216 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL--------RLLLSSPKE 267
Query: 387 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446
N++ EA W ++NI +G + Q Q V+ A +P ++LL ++A WA+ N G
Sbjct: 268 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 327
Query: 447 QLRD---YVINMGVVPPLLSFIK 466
Q D Y+++ G + PL ++
Sbjct: 328 QRPDIIRYLVSQGCIKPLCDLLE 350
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 245 PQISKILVSK-MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
PQ+++ L S M+ + S + GN+QIQ VID+G +P+L+ LLS ++ +
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
L A+ NI +G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAV
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQF--EAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421
IDAG LP ++ +++ PN Q EA WAL+NIASG + Q Q V+ AGA+P ++
Sbjct: 135 IDAGALPALV-------QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 187
Query: 422 LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 461
LL SP+ + ++A+WAL NI G + + V G + L
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 227
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 114/185 (61%), Gaps = 9/185 (4%)
Query: 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315
+IL + +WALS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI +G +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 316 EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375
EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG LP ++
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-- 186
Query: 376 LQKVGRIVLRPNLQF--EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQ 433
+++ PN Q EA WAL+NIASG + Q Q V AGA+ +L + + ++
Sbjct: 187 -----QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 434 AVWAL 438
A AL
Sbjct: 242 AQEAL 246
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 12/234 (5%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344
+P + L+ +++ Q ++ R I++ +EQ Q +++ AL LL+ P E+I +E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF--EAAWALTNIASG 402
A+W LSNI +G Q+QAVIDAG LP ++ +++ PN Q EA WAL+NIASG
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALV-------QLLSSPNEQILQEALWALSNIASG 126
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 462
+ Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Query: 463 SFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515
+ P+ I L+ W + N+ + L L L H + +
Sbjct: 187 QLLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 30/252 (11%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A + ++LS D N I+A+I +G LP LV+ L + LQ EA WAL+NI
Sbjct: 24 DDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNI 81
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+ G +P
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 177 PLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 235
L+ + P+ I L+ W + N+ + LPAL L+ +
Sbjct: 142 ALVQLLSSPNEQI--LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE----- 194
Query: 236 LWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295
+IL + +WALS + GGN+Q Q V ++G + L L SH+
Sbjct: 195 --------------------QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234
Query: 296 EVKVQTASLRAV 307
K+Q + A+
Sbjct: 235 NEKIQKEAQEAL 246
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 126/263 (47%), Gaps = 33/263 (12%)
Query: 551 NSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 610
NS M Q + + +EQ Q +++ AL LL+ P E+I +EA+W LSNI
Sbjct: 22 NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81
Query: 611 TAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEER 670
+G Q+QAVIDAG LP ++ L + +IL + L L N+ + +Q V
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL----WALSNIASGGNEQIQAV--- 134
Query: 671 MIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQ 730
A + QL+ P Q +EA WA+SN+ SG +Q
Sbjct: 135 -------------------IDAGALPALVQLLSSP--NEQILQEALWALSNIA-SGGNEQ 172
Query: 731 VAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIE 790
+ ++ G +P LLS + Q++Q L ++N+ + Q + ++E G L+K+E
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA----VKEAGALEKLE 228
Query: 791 MLQNHENVEIYKLAYDIIERYFS 813
LQ+HEN +I K A + +E+ S
Sbjct: 229 QLQSHENEKIQKEAQEALEKLQS 251
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 45/243 (18%)
Query: 389 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 448
Q A + I S + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G +
Sbjct: 29 QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 449 RDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNIL 507
VI+ G +P L+ + P+ I L+ W + N+ + LPAL L
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 508 IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMC 567
+ + ++ L+ LS+
Sbjct: 147 LSSPNE-------------------------QILQEALWALSN----------------- 164
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627
++ G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q QAV +AG L
Sbjct: 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 224
Query: 628 PKI 630
K+
Sbjct: 225 EKL 227
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 9/179 (5%)
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
LS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI +G +EQ Q +++
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG LP ++ +++
Sbjct: 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-------QLLS 148
Query: 385 RPNLQF--EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
PN Q EA WAL+NIASG + Q Q V AGA P +L SP+ + ++A AL I
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKI 207
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 107/179 (59%), Gaps = 9/179 (5%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344
+P ++ L+ + + ++LR + I +G +EQ Q +++ AL LL+ P E+I +E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF--EAAWALTNIASG 402
A+W LSNI +G Q+QAVIDAG LP ++ +++ PN Q EA WAL+NIASG
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALV-------QLLSSPNEQILQEALWALSNIASG 126
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 461
+ Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + + V G P L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPAL 185
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 9/148 (6%)
Query: 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315
+IL + +WALS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI +G +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 316 EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375
EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q QAV +AG P +
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPAL--- 185
Query: 376 LQKVGRIVLRPN--LQFEAAWALTNIAS 401
++ PN +Q EA AL I S
Sbjct: 186 ----EQLQSSPNEKIQKEAQEALEKIQS 209
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Query: 328 SHFPAL---LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
S P + L P ++ + A+ LS I +G Q+QAVIDAG LP ++ +++
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV-------QLLS 64
Query: 385 RPNLQF--EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442
PN Q EA WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 443 GDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKD 489
G + VI+ G +P L+ + P+ I L+ W + N+ +
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGN 170
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 11/147 (7%)
Query: 66 VQSA-RKL--LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQF--EAAWALTNIASGT 120
+QSA RKL ++S N I+A+I +G LP LV+ L PN Q EA WAL+NIASG
Sbjct: 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGG 85
Query: 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
+ Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 181 FI-KPDIPISFLRNVTWVIVNLCRNKD 206
+ P+ I L+ W + N+ +
Sbjct: 146 LLSSPNEQI--LQEALWALSNIASGGN 170
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQF--EAAWALTNIASGTSAQTQEVVAA 130
++S N I+A+I +G LP LV+ L PN Q EA WAL+NIASG + Q Q V+ A
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GA+P ++LL SP+ + ++A+WAL NI G + + V G P L
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPAL 185
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 30/189 (15%)
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627
++ G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG L
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 628 PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAAT 687
P ++ L + +IL + L L N+ + +Q V
Sbjct: 99 PALVQLLSSPNEQILQEAL----WALSNIASGGNEQIQAV-------------------- 134
Query: 688 GGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLL 747
A + QL+ P Q +EA WA+SN+ GN + A V+E P + L
Sbjct: 135 --IDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQA--VKEAGAEPALEQL 188
Query: 748 SCKDAQVIQ 756
+ IQ
Sbjct: 189 QSSPNEKIQ 197
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 586 SHFPAL---LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKIL 642
S P + L P ++ + A+ LS I +G Q+QAVIDAG LP ++ L + +IL
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 643 NKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLM 702
+ L L N+ + +Q V A + QL+
Sbjct: 72 QEAL----WALSNIASGGNEQIQAV----------------------IDAGALPALVQLL 105
Query: 703 FFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGI 762
P Q +EA WA+SN+ SG +Q+ ++ G +P LLS + Q++Q L +
Sbjct: 106 SSP--NEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 763 NNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
+N+ + Q + ++E G +E LQ+ N +I K A + +E+ S
Sbjct: 163 SNIASGGNEQKQA----VKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQS 209
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 45/218 (20%)
Query: 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
L+ IASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 456 GVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 514
G +P L+ + P+ I L+ W + N+ + LPAL L+ +
Sbjct: 96 GALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE- 152
Query: 515 VSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDE 574
++ L+ LS+ ++ G +E
Sbjct: 153 ------------------------QILQEALWALSN-----------------IASGGNE 171
Query: 575 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
Q Q + A L + P EKI KEA L I +
Sbjct: 172 QKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQS 209
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQF--EAAWALTNIASGTSAQTQEVVAA 130
++S N I+A+I +G LP LV+ L PN Q EA WAL+NIASG + Q Q V A
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQKQAVKEA 179
Query: 131 GAVPLFLRLLMSPHSNVCEQAVWALGNI 158
GA P +L SP+ + ++A AL I
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 107/176 (60%), Gaps = 9/176 (5%)
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
LS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI +G +EQ Q +++
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG LP ++ +++
Sbjct: 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV-------QLLS 148
Query: 385 RPNLQF--EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438
PN Q EA WAL+NIASG + Q Q V AGA+ +L + + ++A AL
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 9/179 (5%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344
+P ++ L+ + + ++LR + I +G +EQ Q +++ AL LL+ P E+I +E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF--EAAWALTNIASG 402
A+W LSNI +G Q+QAVIDAG LP ++ +++ PN Q EA WAL+NIASG
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALV-------QLLSSPNEQILQEALWALSNIASG 126
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 461
+ Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + + V G + L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 77/117 (65%)
Query: 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315
+IL + +WALS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI +G +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 316 EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 372
EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q QAV +AG L K+
Sbjct: 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 328 SHFPAL---LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
S P + L P ++ + A+ LS I +G Q+QAVIDAG LP ++ +++
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV-------QLLS 64
Query: 385 RPNLQF--EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442
PN Q EA WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 443 GDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 501
G + VI+ G +P L+ + P+ I L+ W + N+ + L
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGAL 182
Query: 502 PALNILIHHHDTSV 515
L L H + +
Sbjct: 183 EKLEQLQSHENEKI 196
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
LP +V+ L D+ LQ A L+ IASG + Q Q V+ AGA+P ++LL SP+ + +
Sbjct: 14 LPQMVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPP 208
+A+WAL NI G + VI+ G +P L+ + P+ I L+ W + N+ +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQ 130
Query: 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268
LPAL L+ + +IL + +WALS +
Sbjct: 131 IQAVIDAGALPALVQLLSSPNE-------------------------QILQEALWALSNI 165
Query: 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAV 307
GGN+Q Q V ++G + L L SH+ K+Q + A+
Sbjct: 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Query: 66 VQSA-RKL--LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQF--EAAWALTNIASGT 120
+QSA RKL ++S N I+A+I +G LP LV+ L PN Q EA WAL+NIASG
Sbjct: 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGG 85
Query: 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
+ Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+
Sbjct: 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 181 FI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 232
+ P+ I L+ W + N+ + L L L H + +
Sbjct: 146 LLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFL 191
+P ++ L SP + A+ L I G + VI+ G +P L+ + P+ I L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI--L 71
Query: 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 251
+ W + N+ + LPAL L+ +
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--------------------- 110
Query: 252 VSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311
+IL + +WALS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI
Sbjct: 111 ----QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166
Query: 312 TGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
+G +EQ Q + AL L +H EKI KEA
Sbjct: 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 36/231 (15%)
Query: 586 SHFPAL---LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKIL 642
S P + L P ++ + A+ LS I +G Q+QAVIDAG LP ++ L + +IL
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 643 NKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLM 702
+ L L N+ + +Q V A + QL+
Sbjct: 72 QEAL----WALSNIASGGNEQIQAV----------------------IDAGALPALVQLL 105
Query: 703 FFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGI 762
P Q +EA WA+SN+ SG +Q+ ++ G +P LLS + Q++Q L +
Sbjct: 106 SSP--NEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162
Query: 763 NNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
+N+ + Q + ++E G L+K+E LQ+HEN +I K A + +E+ S
Sbjct: 163 SNIASGGNEQKQA----VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 45/209 (21%)
Query: 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
L+ IASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+
Sbjct: 36 LSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95
Query: 456 GVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 514
G +P L+ + P+ I L+ W + N+ + LPAL L+ +
Sbjct: 96 GALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE- 152
Query: 515 VSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDE 574
++ L+ LS+ ++ G +E
Sbjct: 153 ------------------------QILQEALWALSN-----------------IASGGNE 171
Query: 575 QTQVILNCDALSHFPALLTHPKEKICKEA 603
Q Q + AL L +H EKI KEA
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627
++ G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG L
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140
Query: 628 PKIIANLQKRSCKILNKYL 646
P ++ L + +IL + L
Sbjct: 141 PALVQLLSSPNEQILQEAL 159
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 87/216 (40%), Gaps = 45/216 (20%)
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFL 474
+P ++ L SP + A+ L I G + VI+ G +P L+ + P+ I L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI--L 71
Query: 475 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 534
+ W + N+ + LPAL L+ +
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--------------------- 110
Query: 535 VSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH 594
++ L+ LS+ ++ G +EQ Q +++ AL LL+
Sbjct: 111 ----QILQEALWALSN-----------------IASGGNEQIQAVIDAGALPALVQLLSS 149
Query: 595 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630
P E+I +EA+W LSNI +G Q QAV +AG L K+
Sbjct: 150 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQF--EAAWALTNIASGTSAQTQEVVAA 130
++S N I+A+I +G LP LV+ L PN Q EA WAL+NIASG + Q Q V A
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQKQAVKEA 179
Query: 131 GAVPLFLRLLMSPHSNVCEQAVWAL 155
GA+ +L + + ++A AL
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEAL 204
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 126 bits (316), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 9/179 (5%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344
+P + L+ +++ Q ++ R I++ +EQ Q +++ AL LL+ P E+I +E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF--EAAWALTNIASG 402
A+W LSNI +G Q+QAVIDAG LP ++ +++ PN Q EA WAL+NIASG
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALV-------QLLSSPNEQILQEALWALSNIASG 126
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 461
+ Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + + V G + L
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 115/197 (58%), Gaps = 10/197 (5%)
Query: 245 PQISKILVSK-MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
PQ+++ L S M+ + S + GN+QIQ VID+G +P+L+ LLS ++ +
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
L A+ NI +G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAV
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQF--EAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421
IDAG LP ++ +++ PN Q EA WAL+NIASG + Q Q V AGA+ +
Sbjct: 135 IDAGALPALV-------QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187
Query: 422 LLMSPHSNVCEQAVWAL 438
L + + ++A AL
Sbjct: 188 LQSHENEKIQKEAQEAL 204
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 5/177 (2%)
Query: 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116
D+ + QL A + ++LS D N I+A+I +G LP LV+ L + LQ EA WAL+NI
Sbjct: 24 DDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNI 81
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 176
ASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+ G +P
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 177 PLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 232
L+ + P+ I L+ W + N+ + L L L H + +
Sbjct: 142 ALVQLLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 13/171 (7%)
Query: 348 FLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF--EAAWALTNIASGTSA 405
F ++ GN+ Q+QAVIDAG LP ++ +++ PN Q EA WAL+NIASG +
Sbjct: 36 FSQILSDGNE-QIQAVIDAGALPALV-------QLLSSPNEQILQEALWALSNIASGGNE 87
Query: 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 465
Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+ +
Sbjct: 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 466 -KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515
P+ I L+ W + N+ + L L L H + +
Sbjct: 148 SSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 104/263 (39%), Gaps = 75/263 (28%)
Query: 551 NSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 610
NS M Q + + +EQ Q +++ AL LL+ P E+I +EA+W LSNI
Sbjct: 22 NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81
Query: 611 TAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEER 670
+G Q+QAVIDAG LP ++ L + +IL + L L N+ + +Q V
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL----WALSNIASGGNEQIQAV--- 134
Query: 671 MIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQ 730
A + QL+ P Q +EA WA+SN+ GN +
Sbjct: 135 -------------------IDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQK 173
Query: 731 VAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIE 790
A ++E G L+K+E
Sbjct: 174 QA-----------------------------------------------VKEAGALEKLE 186
Query: 791 MLQNHENVEIYKLAYDIIERYFS 813
LQ+HEN +I K A + +E+ S
Sbjct: 187 QLQSHENEKIQKEAQEALEKLQS 209
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 45/216 (20%)
Query: 389 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 448
Q A + I S + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G +
Sbjct: 29 QLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 449 RDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNIL 507
VI+ G +P L+ + P+ I L+ W + N+ + LPAL L
Sbjct: 89 IQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 508 IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMC 567
+ + ++ L+ LS+
Sbjct: 147 LSSPNE-------------------------QILQEALWALSN----------------- 164
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 603
++ G +EQ Q + AL L +H EKI KEA
Sbjct: 165 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
++S N I+A+I +G LP LV+ L + LQ EA WAL+NIASG + Q Q V AGA
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGA 181
Query: 133 VPLFLRLLMSPHSNVCEQAVWAL 155
+ +L + + ++A AL
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEAL 204
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 95.9 bits (237), Expect = 9e-20, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Query: 264 ALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323
AL+ + G ++ I+ ++D+G V L+ LL+ + +VQ + RA+ NI +G DE + I++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 324 CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIV 383
+ LLT ++ KEA L+NI +G ++A++DAG + ++ L V
Sbjct: 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 186
Query: 384 LRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443
Q EAA AL NIASG ++ + +V AG V + +LL S S V ++A AL NI
Sbjct: 187 -----QKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241
Query: 444 DG 445
G
Sbjct: 242 GG 243
Score = 94.0 bits (232), Expect = 4e-19, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 6/182 (3%)
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
L+ + G I+ ++D+G V L+ LL+ + +VQ + RA+ NI +G DE + I++
Sbjct: 26 LAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
+ LLT ++ KEA L+NI +G ++A++DAG + ++ L V
Sbjct: 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV- 144
Query: 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444
Q EAA AL NIASG + +V AG V + ++LL S S V ++A AL N I
Sbjct: 145 ----QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN-IAS 199
Query: 445 GP 446
GP
Sbjct: 200 GP 201
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 5/181 (2%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344
V L+ LL+ + + Q + R + I +G + I++ + LLT ++ KE
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404
A L+NI +G ++A++DAG + ++ L V Q EAA AL NIASG
Sbjct: 64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV-----QKEAARALANIASGPD 118
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 464
+ +V AG V + ++LL S S V ++A AL NI + +++ G V L+
Sbjct: 119 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178
Query: 465 I 465
+
Sbjct: 179 L 179
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 27/263 (10%)
Query: 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 152
LV+ L +D Q EAA L IASG ++ + +V AG V + ++LL S S V ++A
Sbjct: 7 LVKLLTSTDSET-QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 65
Query: 153 WALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212
AL NI + +++ G V L+ + + + N+ D
Sbjct: 66 RALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPD------ 118
Query: 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG 272
A+ ++ V + L S + ++ K + AL+ + G
Sbjct: 119 ------EAIKAIVDAGGVEVLVKLLTS---TDSEVQK----------EAARALANIASGP 159
Query: 273 NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA 332
++ I+ ++D+G V L+ LL+ + +VQ + RA+ NI +G + I++ +
Sbjct: 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQK 219
Query: 333 LLTHPKEKICKEAVWFLSNITAG 355
LLT ++ KEA L NI +G
Sbjct: 220 LLTSTDSEVQKEAQRALENIKSG 242
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 67 QSARKL--LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124
++AR L ++S I+A++ +G + VLV+ L +D +Q EAA AL NIASG
Sbjct: 21 EAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAI 79
Query: 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP 184
+ +V AG V + ++LL S S V ++A AL NI + +++ G V L+ +
Sbjct: 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT- 138
Query: 185 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKN 244
+ + N+ D A+ ++ V + L S +
Sbjct: 139 STDSEVQKEAARALANIASGPD------------EAIKAIVDAGGVEVLVKLLTS---TD 183
Query: 245 PQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASL 304
++ K + AL+ + G I+ ++D+G V L LL+ + +VQ +
Sbjct: 184 SEVQK----------EAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233
Query: 305 RAVGNIVTG 313
RA+ NI +G
Sbjct: 234 RALENIKSG 242
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 67 QSARKL--LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124
++AR L ++S + I+A++ +G + VLV+ L +D +Q EAA AL NIASG ++
Sbjct: 147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPTSAI 205
Query: 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162
+ +V AG V + +LL S S V ++A AL NI G
Sbjct: 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 33/242 (13%)
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627
++ G + I++ + LLT ++ KEA L+NI +G ++A++DAG
Sbjct: 29 IASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG-- 86
Query: 628 PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAAT 687
++L K L + + V + + L N+ +S + +
Sbjct: 87 ----------GVEVLVKLLTSTD---SEVQKEAARALANI------ASGPDEAIKAIVDA 127
Query: 688 GGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLL 747
GG + + + + QKEAA A++N+ SG + + +V G + LL
Sbjct: 128 GGVEVL-------VKLLTSTDSEVQKEAARALANIA-SGPDEAIKAIVDAGGVEVLVKLL 179
Query: 748 SCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDI 807
+ D++V + + N+ + ++ I + GG++ ++ L + E+ K A
Sbjct: 180 TSTDSEVQKEAARALANIASGPTSAIKA----IVDAGGVEVLQKLLTSTDSEVQKEAQRA 235
Query: 808 IE 809
+E
Sbjct: 236 LE 237
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 558 QKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 617
QK+ ++ G DE + I++ + LLT ++ KEA L+NI +G +
Sbjct: 145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204
Query: 618 VQAVIDAG---LLPKIIANLQKRSCKILNKYLDN 648
++A++DAG +L K++ + K + L+N
Sbjct: 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 558 QKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 617
QK+ ++ G DE + I++ + LLT ++ KEA L+NI +G
Sbjct: 61 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 120
Query: 618 VQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQ 677
++A++DAG ++L K L + + V + + L N+ +S
Sbjct: 121 IKAIVDAG------------GVEVLVKLLTSTD---SEVQKEAARALANI------ASGP 159
Query: 678 KTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQE 737
+ + GG + + + + QKEAA A++N+ SG + +V
Sbjct: 160 DEAIKAIVDAGGVEVL-------VKLLTSTDSEVQKEAARALANIA-SGPTSAIKAIVDA 211
Query: 738 GVIPPFCDLLSCKDAQVIQVVLDGINNM 765
G + LL+ D++V + + N+
Sbjct: 212 GGVEVLQKLLTSTDSEVQKEAQRALENI 239
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNV 27
MRRRR EV VELRK K+++ + KRRNV
Sbjct: 17 MRRRRIEVNVELRKAKKDDQMLKRRNV 43
>pdb|1QGR|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 27
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNV 27
RRRR EV VELRK K+++ + KRRNV
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNV 26
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQV-ILNCDALSHFPALLTHPKE---- 339
+P L+ LL H + +V + A+ NI G D+ ++ I NCD + LL ++
Sbjct: 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151
Query: 340 KICKEAVWFLSN 351
++ +W LS+
Sbjct: 152 EVITGTLWNLSS 163
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 81 IEALI-HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 139
IE L+ S IL ++ +C++ P ++ ++++AL + Q + A +P+
Sbjct: 634 IEQLVARSNILTLMYQCMQ-DKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTN 691
Query: 140 LMSPHSNVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWV 197
L +VC A WA+G I I G +++ Y+ V+ L+ I +P+ P + L N
Sbjct: 692 LNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAIT 749
Query: 198 IVNL 201
I L
Sbjct: 750 IGRL 753
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 81 IEALI-HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 139
IE L+ S IL ++ +C++ P ++ ++++AL + Q + A +P+
Sbjct: 659 IEQLVARSNILTLMYQCMQ-DKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTN 716
Query: 140 LMSPHSNVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWV 197
L +VC A WA+G I I G +++ Y+ V+ L+ I +P+ P + L N
Sbjct: 717 LNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAIT 774
Query: 198 IVNL 201
I L
Sbjct: 775 IGRL 778
>pdb|2I9B|E Chain E, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|F Chain F, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|G Chain G, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|H Chain H, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 279
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
SRYL +S S MSC++ +H C SP
Sbjct: 92 SRYLECISCGSSDMSCERGRHQSLQCRSP 120
>pdb|2FD6|U Chain U, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar
Antibody At 1.9 A
Length = 276
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
SRYL +S S MSC++ +H C SP
Sbjct: 91 SRYLECISCGSSDMSCERGRHQSLQCRSP 119
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 81 IEALI-HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 139
IE L+ S IL ++ +C++ P ++ ++++AL + Q + A +P+
Sbjct: 621 IEQLVARSNILTLMYQCMQ-DKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTN 678
Query: 140 LMSPHSNVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWV 197
L +VC A WA+G I I G +++ Y+ V+ L+ I +P+ P + L N
Sbjct: 679 LNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAIT 736
Query: 198 IVNL 201
I L
Sbjct: 737 IGRL 740
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 152 VWALGNIIGDGPQLRDYVINMGVVPPLLSFI 182
+W+LG+I+G GP+ R+ V + V+ P +S I
Sbjct: 32 IWSLGDIVGYGPRPRECVELVRVLAPNISVI 62
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 435 VWALGNIIGDGPQLRDYVINMGVVPPLLSFI 465
+W+LG+I+G GP+ R+ V + V+ P +S I
Sbjct: 32 IWSLGDIVGYGPRPRECVELVRVLAPNISVI 62
>pdb|1YWH|A Chain A, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|C Chain C, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|E Chain E, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|G Chain G, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|I Chain I, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|K Chain K, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|M Chain M, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
pdb|1YWH|O Chain O, Crystal Structure Of Urokinase Plasminogen Activator
Receptor
Length = 313
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
SRYL +S S MSC++ +H C SP
Sbjct: 90 SRYLECISCGSSDMSCERGRHQSLQCRSP 118
>pdb|3U73|U Chain U, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
pdb|3U74|U Chain U, Crystal Structure Of Stabilized Human Upar Mutant
Length = 283
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
SRYL +S S MSC++ +H C SP
Sbjct: 90 SRYLECISCGSSDMSCERGRHQSLQCRSP 118
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 43/220 (19%), Positives = 94/220 (42%), Gaps = 15/220 (6%)
Query: 222 NILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVI- 280
N+L+H +++ L + + ++K V + I D + L+Y GN + +++I
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY----GNQESKLIIL 179
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
SG +L+ ++ + + V +++ I+ + LT P ++
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 239
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400
+ + +W L N++ + A Q ++ GLL ++ Q +G + N+ AA L+N+
Sbjct: 240 LVQNCLWTLRNLS--DAATKQEGME-GLLGTLV---QLLGSDDI--NVVTCAAGILSNLT 291
Query: 401 SGTSAQTQEVVAAGAVPLFLRLLM--SPHSNVCEQAVWAL 438
V G + +R ++ ++ E A+ AL
Sbjct: 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331
>pdb|3BT1|U Chain U, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|U Chain U, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 283
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
SRYL +S S MSC++ +H C SP
Sbjct: 92 SRYLECISCGSSDMSCERGRHQSLQCRSP 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,330,037
Number of Sequences: 62578
Number of extensions: 967974
Number of successful extensions: 3548
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2295
Number of HSP's gapped (non-prelim): 399
length of query: 845
length of database: 14,973,337
effective HSP length: 107
effective length of query: 738
effective length of database: 8,277,491
effective search space: 6108788358
effective search space used: 6108788358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)