Query psy12605
Match_columns 845
No_of_seqs 326 out of 3010
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 23:33:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166|consensus 100.0 1.3E-70 2.7E-75 579.4 45.8 487 1-845 22-514 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 1.8E-70 3.9E-75 530.9 35.2 485 1-837 25-520 (526)
3 PLN03200 cellulose synthase-in 100.0 5.8E-54 1.3E-58 516.8 62.4 661 44-819 13-770 (2102)
4 PLN03200 cellulose synthase-in 100.0 9.3E-53 2E-57 506.4 64.0 690 43-815 143-862 (2102)
5 COG5064 SRP1 Karyopherin (impo 100.0 1.6E-46 3.5E-51 364.4 20.9 303 326-634 72-378 (526)
6 KOG0166|consensus 100.0 2.1E-41 4.5E-46 358.1 33.7 372 327-819 68-442 (514)
7 KOG4224|consensus 100.0 5.8E-30 1.3E-34 251.5 28.1 475 90-822 49-531 (550)
8 KOG4224|consensus 100.0 6.9E-29 1.5E-33 244.0 22.2 361 89-488 86-448 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.5E-21 3.2E-26 219.9 48.2 511 89-809 124-645 (708)
10 PF05804 KAP: Kinesin-associat 99.9 4E-21 8.6E-26 216.5 39.6 386 58-488 262-651 (708)
11 KOG1048|consensus 99.8 2.2E-18 4.7E-23 189.2 23.4 395 41-442 230-683 (717)
12 KOG1048|consensus 99.8 2.3E-17 5E-22 181.2 25.0 411 284-772 234-689 (717)
13 KOG4500|consensus 99.7 5.7E-15 1.2E-19 149.7 32.1 425 102-634 55-499 (604)
14 KOG0168|consensus 99.7 5.1E-16 1.1E-20 169.1 24.0 262 45-337 168-438 (1051)
15 KOG2171|consensus 99.7 3.6E-13 7.8E-18 153.6 42.5 505 44-781 4-518 (1075)
16 KOG4199|consensus 99.7 5.5E-14 1.2E-18 138.4 30.0 325 86-445 102-446 (461)
17 KOG1241|consensus 99.7 1.7E-13 3.8E-18 148.5 33.6 415 48-487 5-478 (859)
18 COG5215 KAP95 Karyopherin (imp 99.7 1.8E-12 3.8E-17 136.0 38.0 628 55-780 15-724 (858)
19 PF10508 Proteasom_PSMB: Prote 99.7 6E-13 1.3E-17 149.7 37.7 390 257-812 54-461 (503)
20 PF10508 Proteasom_PSMB: Prote 99.7 3.9E-13 8.5E-18 151.2 35.8 398 50-483 43-462 (503)
21 KOG4500|consensus 99.7 1.7E-13 3.7E-18 139.1 29.2 329 85-446 84-434 (604)
22 PF01602 Adaptin_N: Adaptin N 99.6 5.5E-14 1.2E-18 162.5 28.6 358 52-487 11-370 (526)
23 KOG1293|consensus 99.6 8.6E-13 1.9E-17 141.6 34.5 503 91-772 13-538 (678)
24 KOG2171|consensus 99.6 2E-12 4.4E-17 147.6 36.3 463 46-636 38-527 (1075)
25 KOG2122|consensus 99.6 1.1E-13 2.4E-18 157.9 25.3 361 48-446 201-604 (2195)
26 PTZ00429 beta-adaptin; Provisi 99.6 3.8E-11 8.2E-16 138.3 45.6 383 46-511 34-417 (746)
27 KOG2023|consensus 99.6 1.4E-13 3.1E-18 146.6 23.6 280 131-443 128-463 (885)
28 KOG1222|consensus 99.6 2.1E-12 4.5E-17 132.8 29.5 370 40-453 299-673 (791)
29 KOG4199|consensus 99.6 4.2E-12 9.1E-17 125.3 28.9 321 130-487 103-445 (461)
30 KOG1293|consensus 99.6 3.7E-12 7.9E-17 136.9 30.0 403 52-488 16-492 (678)
31 KOG1241|consensus 99.5 4E-12 8.7E-17 138.1 25.9 632 42-811 170-853 (859)
32 KOG2122|consensus 99.5 2.4E-12 5.1E-17 147.4 24.7 378 92-614 201-603 (2195)
33 KOG2023|consensus 99.5 3.3E-11 7.1E-16 128.9 30.1 623 45-772 129-822 (885)
34 PRK09687 putative lyase; Provi 99.5 1.9E-12 4.2E-17 133.4 20.1 255 89-440 24-279 (280)
35 KOG1222|consensus 99.4 1.1E-10 2.5E-15 120.2 28.6 362 82-488 298-665 (791)
36 PRK09687 putative lyase; Provi 99.4 1.2E-11 2.7E-16 127.5 21.5 255 131-482 23-278 (280)
37 PF01602 Adaptin_N: Adaptin N 99.4 4.6E-10 9.9E-15 129.8 32.9 314 102-485 19-332 (526)
38 PTZ00429 beta-adaptin; Provisi 99.4 3.9E-08 8.5E-13 113.7 47.6 366 45-488 69-435 (746)
39 PF04826 Arm_2: Armadillo-like 99.3 3.9E-11 8.5E-16 120.7 18.2 197 84-313 8-206 (254)
40 PRK13800 putative oxidoreducta 99.3 1.6E-10 3.4E-15 139.8 26.7 276 44-440 621-896 (897)
41 PF04826 Arm_2: Armadillo-like 99.3 1.4E-10 2.9E-15 116.8 19.8 199 280-489 9-208 (254)
42 cd00020 ARM Armadillo/beta-cat 99.3 4E-11 8.6E-16 108.4 14.5 119 83-203 2-120 (120)
43 PRK13800 putative oxidoreducta 99.3 4.5E-10 9.7E-15 135.9 27.7 276 87-482 620-895 (897)
44 cd00020 ARM Armadillo/beta-cat 99.2 2.3E-10 5E-15 103.4 14.0 117 321-442 3-119 (120)
45 cd00256 VATPase_H VATPase_H, r 99.2 4.9E-09 1.1E-13 112.4 25.9 327 88-443 53-425 (429)
46 KOG0946|consensus 99.2 4.2E-07 9.1E-12 100.0 38.8 340 42-411 20-409 (970)
47 KOG0168|consensus 99.2 6.4E-09 1.4E-13 114.7 24.6 251 337-637 180-438 (1051)
48 KOG0946|consensus 99.2 3.8E-07 8.1E-12 100.4 37.9 359 132-551 23-419 (970)
49 cd00256 VATPase_H VATPase_H, r 99.1 2.3E-08 4.9E-13 107.3 22.3 300 45-354 102-425 (429)
50 COG5215 KAP95 Karyopherin (imp 99.0 3.5E-07 7.5E-12 97.0 29.7 482 41-569 173-710 (858)
51 KOG1824|consensus 99.0 1.9E-06 4.2E-11 96.6 33.3 488 55-612 580-1095(1233)
52 KOG1824|consensus 99.0 1.5E-06 3.3E-11 97.5 32.4 296 46-354 49-402 (1233)
53 KOG2160|consensus 98.9 3.1E-08 6.7E-13 101.0 16.9 190 99-312 93-282 (342)
54 KOG0213|consensus 98.9 1.3E-05 2.9E-10 87.7 34.2 555 100-815 564-1144(1172)
55 KOG1059|consensus 98.8 3E-06 6.6E-11 92.6 28.7 398 47-517 147-566 (877)
56 KOG2160|consensus 98.8 2E-07 4.3E-12 95.2 18.5 183 257-443 99-282 (342)
57 KOG1062|consensus 98.7 8.1E-05 1.8E-09 83.0 36.1 289 133-490 109-418 (866)
58 KOG2759|consensus 98.7 4.8E-07 1E-11 93.4 17.6 297 46-354 116-438 (442)
59 KOG1060|consensus 98.7 2.8E-05 6.1E-10 86.1 30.8 288 46-403 37-352 (968)
60 KOG0213|consensus 98.7 1.7E-05 3.8E-10 86.9 28.8 424 132-616 473-916 (1172)
61 KOG1062|consensus 98.7 6.2E-06 1.4E-10 91.6 25.4 368 47-478 145-573 (866)
62 KOG2759|consensus 98.7 9.6E-06 2.1E-10 84.0 24.9 321 89-443 66-438 (442)
63 KOG4413|consensus 98.6 1.7E-05 3.8E-10 78.9 24.2 377 52-483 89-481 (524)
64 KOG1789|consensus 98.6 0.00091 2E-08 76.4 39.0 594 63-749 1402-2141(2235)
65 KOG1789|consensus 98.6 0.00012 2.6E-09 83.2 31.0 353 61-426 1741-2142(2235)
66 PF03224 V-ATPase_H_N: V-ATPas 98.5 2.3E-06 4.9E-11 91.0 16.9 228 174-433 56-304 (312)
67 KOG1061|consensus 98.5 0.00023 5.1E-09 79.6 32.6 381 45-488 50-455 (734)
68 PF03224 V-ATPase_H_N: V-ATPas 98.5 2.8E-06 6.1E-11 90.3 17.3 229 133-393 57-306 (312)
69 KOG1059|consensus 98.5 0.00018 3.9E-09 79.2 30.3 337 90-488 146-492 (877)
70 PF05536 Neurochondrin: Neuroc 98.5 0.00021 4.6E-09 81.0 32.1 408 45-488 6-495 (543)
71 KOG1517|consensus 98.4 1.2E-05 2.5E-10 91.5 19.6 268 61-363 452-741 (1387)
72 KOG1242|consensus 98.4 0.00059 1.3E-08 74.8 31.9 264 132-443 56-324 (569)
73 PF01749 IBB: Importin beta bi 98.4 8.9E-08 1.9E-12 81.0 1.2 66 1-67 23-96 (97)
74 KOG4413|consensus 98.4 2.7E-05 5.8E-10 77.6 18.0 338 285-630 84-457 (524)
75 KOG3678|consensus 98.3 4.4E-05 9.5E-10 79.5 19.6 241 407-809 173-448 (832)
76 KOG1061|consensus 98.3 0.0013 2.8E-08 73.9 30.6 377 52-509 20-396 (734)
77 PF05536 Neurochondrin: Neuroc 98.3 0.0019 4.2E-08 73.3 32.9 236 132-401 6-261 (543)
78 COG5369 Uncharacterized conser 98.3 3.8E-06 8.1E-11 88.8 9.6 142 299-445 405-547 (743)
79 KOG3678|consensus 98.3 2.9E-05 6.4E-10 80.7 15.8 185 277-470 174-362 (832)
80 TIGR02270 conserved hypothetic 98.2 0.00012 2.5E-09 79.7 21.2 244 89-445 55-298 (410)
81 KOG1060|consensus 98.2 0.00088 1.9E-08 74.7 26.6 356 99-518 153-523 (968)
82 KOG0212|consensus 98.2 0.00022 4.7E-09 76.6 21.2 347 86-488 82-446 (675)
83 PF00514 Arm: Armadillo/beta-c 98.2 3.5E-06 7.5E-11 59.1 4.8 40 120-159 1-40 (41)
84 KOG1242|consensus 98.1 0.0047 1E-07 68.0 30.6 396 46-508 98-501 (569)
85 COG5181 HSH155 U2 snRNP splice 98.1 0.003 6.5E-08 68.6 27.9 149 368-526 605-759 (975)
86 TIGR02270 conserved hypothetic 98.1 0.00032 6.9E-09 76.3 21.0 243 45-403 55-298 (410)
87 COG5369 Uncharacterized conser 98.1 4.3E-05 9.3E-10 81.1 13.6 268 148-441 406-739 (743)
88 KOG0915|consensus 98.1 0.0053 1.2E-07 73.6 31.5 341 50-433 823-1191(1702)
89 KOG0211|consensus 98.1 0.0035 7.5E-08 72.6 29.7 337 57-443 171-508 (759)
90 KOG0212|consensus 98.1 0.00034 7.4E-09 75.1 19.8 332 130-509 83-425 (675)
91 KOG1058|consensus 98.1 0.0035 7.6E-08 69.8 27.4 375 48-515 24-412 (948)
92 COG1413 FOG: HEAT repeat [Ener 98.0 0.0012 2.5E-08 71.5 23.5 214 44-349 43-268 (335)
93 PRK14707 hypothetical protein; 98.0 0.1 2.2E-06 65.1 39.9 359 90-485 165-529 (2710)
94 COG5181 HSH155 U2 snRNP splice 98.0 0.00043 9.4E-09 74.8 17.9 267 132-446 605-873 (975)
95 KOG1077|consensus 98.0 0.013 2.8E-07 64.9 29.3 416 94-574 80-516 (938)
96 KOG0915|consensus 98.0 0.0014 3E-08 78.3 23.4 213 260-520 976-1193(1702)
97 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0049 1.1E-07 66.4 25.6 303 136-485 30-363 (371)
98 KOG4646|consensus 97.9 0.00016 3.5E-09 62.8 10.9 115 88-205 16-130 (173)
99 COG1413 FOG: HEAT repeat [Ener 97.9 0.0014 3E-08 70.9 21.2 264 88-445 43-306 (335)
100 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0026 5.6E-08 68.5 22.2 317 47-400 28-363 (371)
101 COG5240 SEC21 Vesicle coat com 97.8 0.02 4.3E-07 62.0 27.7 253 132-446 66-335 (898)
102 KOG2973|consensus 97.8 0.0025 5.4E-08 63.8 19.6 302 91-444 6-316 (353)
103 KOG1943|consensus 97.8 0.0095 2.1E-07 69.3 26.5 267 131-443 341-611 (1133)
104 PF13646 HEAT_2: HEAT repeats; 97.8 5E-05 1.1E-09 63.9 6.3 88 90-199 1-88 (88)
105 PF00514 Arm: Armadillo/beta-c 97.8 5.2E-05 1.1E-09 53.1 4.8 41 403-443 1-41 (41)
106 KOG1943|consensus 97.7 0.024 5.1E-07 66.2 28.3 384 41-485 338-746 (1133)
107 KOG0211|consensus 97.7 0.012 2.5E-07 68.4 26.2 359 104-518 97-456 (759)
108 KOG4646|consensus 97.6 0.00069 1.5E-08 59.0 10.9 131 46-180 18-148 (173)
109 PRK14707 hypothetical protein; 97.6 0.39 8.5E-06 60.3 40.1 404 45-486 206-614 (2710)
110 PF10165 Ric8: Guanine nucleot 97.6 0.015 3.3E-07 64.7 23.9 254 81-357 15-340 (446)
111 KOG1058|consensus 97.6 0.094 2E-06 59.0 28.6 204 283-520 134-338 (948)
112 PF12460 MMS19_C: RNAPII trans 97.6 0.064 1.4E-06 59.6 28.5 348 47-449 2-400 (415)
113 KOG2259|consensus 97.6 0.004 8.7E-08 68.4 17.8 283 136-447 203-515 (823)
114 COG5231 VMA13 Vacuolar H+-ATPa 97.5 0.0032 7E-08 63.1 14.8 259 54-352 158-426 (432)
115 KOG2259|consensus 97.5 0.031 6.7E-07 61.8 23.1 250 215-518 197-465 (823)
116 PF12348 CLASP_N: CLASP N term 97.4 0.0014 3.1E-08 66.4 12.4 187 55-274 17-210 (228)
117 KOG4535|consensus 97.4 0.024 5.2E-07 60.1 20.8 110 53-162 55-181 (728)
118 KOG2734|consensus 97.4 0.025 5.4E-07 59.5 20.8 233 80-334 117-370 (536)
119 KOG1240|consensus 97.4 0.0053 1.1E-07 72.0 17.3 299 89-443 423-725 (1431)
120 KOG1517|consensus 97.4 0.0063 1.4E-07 70.2 17.6 234 62-322 487-742 (1387)
121 KOG2973|consensus 97.4 0.05 1.1E-06 54.8 21.6 287 46-352 5-313 (353)
122 PF09759 Atx10homo_assoc: Spin 97.4 0.00093 2E-08 56.4 8.2 68 105-172 2-71 (102)
123 smart00185 ARM Armadillo/beta- 97.4 0.00042 9.2E-09 48.4 5.3 39 121-159 2-40 (41)
124 KOG1991|consensus 97.4 0.51 1.1E-05 55.2 34.8 264 302-612 391-671 (1010)
125 COG5096 Vesicle coat complex, 97.4 0.49 1.1E-05 54.9 35.1 169 182-402 28-196 (757)
126 PF13646 HEAT_2: HEAT repeats; 97.3 0.00044 9.6E-09 58.1 5.8 87 285-397 1-88 (88)
127 PF13513 HEAT_EZ: HEAT-like re 97.3 0.0004 8.6E-09 52.3 4.5 55 103-158 1-55 (55)
128 COG5096 Vesicle coat complex, 97.2 0.66 1.4E-05 53.8 33.0 169 54-246 28-196 (757)
129 KOG1240|consensus 97.2 0.0081 1.8E-07 70.5 15.5 265 42-355 460-726 (1431)
130 PF13513 HEAT_EZ: HEAT-like re 97.2 0.00058 1.2E-08 51.4 4.4 55 386-441 1-55 (55)
131 KOG1078|consensus 97.2 0.48 1E-05 53.9 28.3 176 284-487 246-422 (865)
132 KOG0567|consensus 97.1 0.022 4.8E-07 56.1 15.8 92 327-443 189-280 (289)
133 KOG2734|consensus 97.1 0.15 3.3E-06 53.8 22.4 240 110-377 105-371 (536)
134 KOG1077|consensus 97.0 0.94 2E-05 50.9 34.8 95 189-316 126-220 (938)
135 COG5240 SEC21 Vesicle coat com 97.0 0.053 1.2E-06 58.8 18.0 289 132-485 265-554 (898)
136 KOG1991|consensus 96.9 1.3 2.9E-05 51.9 30.3 414 58-512 431-875 (1010)
137 PF12348 CLASP_N: CLASP N term 96.9 0.0067 1.4E-07 61.5 10.8 188 184-407 17-212 (228)
138 KOG2062|consensus 96.8 0.15 3.2E-06 57.3 20.7 99 585-769 556-655 (929)
139 PF12460 MMS19_C: RNAPII trans 96.8 0.33 7E-06 54.0 24.2 355 133-528 1-397 (415)
140 KOG2274|consensus 96.8 0.55 1.2E-05 54.3 25.3 239 141-416 460-704 (1005)
141 COG5231 VMA13 Vacuolar H+-ATPa 96.8 0.069 1.5E-06 53.9 15.9 295 104-442 123-427 (432)
142 smart00185 ARM Armadillo/beta- 96.8 0.0037 8.1E-08 43.5 5.4 38 405-442 3-40 (41)
143 PF10165 Ric8: Guanine nucleot 96.7 0.099 2.2E-06 58.3 18.8 197 257-454 48-290 (446)
144 KOG0414|consensus 96.7 2.3 5E-05 51.0 40.6 140 584-812 920-1063(1251)
145 PF09759 Atx10homo_assoc: Spin 96.6 0.013 2.8E-07 49.7 8.5 67 388-454 2-70 (102)
146 KOG0567|consensus 96.6 0.072 1.6E-06 52.6 14.7 91 327-442 38-128 (289)
147 PF12755 Vac14_Fab1_bd: Vacuol 96.6 0.023 4.9E-07 48.2 10.0 94 711-812 2-95 (97)
148 KOG1078|consensus 96.6 2 4.4E-05 49.2 30.0 247 135-447 68-315 (865)
149 KOG2062|consensus 96.6 0.065 1.4E-06 60.1 15.6 289 89-466 414-707 (929)
150 PF05918 API5: Apoptosis inhib 96.5 0.21 4.4E-06 56.1 19.2 118 93-231 28-148 (556)
151 KOG0414|consensus 96.4 2.8 6E-05 50.4 28.3 59 705-770 1008-1067(1251)
152 KOG1020|consensus 96.2 2.4 5.2E-05 52.1 26.7 126 257-399 832-958 (1692)
153 KOG2274|consensus 96.1 1.7 3.6E-05 50.6 23.5 314 56-404 461-783 (1005)
154 KOG4151|consensus 96.1 0.16 3.4E-06 58.0 15.6 175 283-462 541-718 (748)
155 KOG4535|consensus 96.0 0.028 6.1E-07 59.6 8.8 190 294-485 402-602 (728)
156 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.023 4.9E-07 48.2 6.5 61 704-767 36-96 (97)
157 KOG1248|consensus 95.9 0.66 1.4E-05 55.4 20.1 234 92-354 657-898 (1176)
158 KOG1020|consensus 95.9 6.8 0.00015 48.5 34.5 109 88-206 816-924 (1692)
159 PF11698 V-ATPase_H_C: V-ATPas 95.8 0.015 3.2E-07 50.7 4.7 71 89-159 44-114 (119)
160 KOG4151|consensus 95.7 0.22 4.9E-06 56.8 15.0 246 157-438 488-736 (748)
161 PF08045 CDC14: Cell division 95.7 0.7 1.5E-05 46.6 16.8 101 105-205 107-209 (257)
162 KOG3036|consensus 95.7 0.34 7.3E-06 47.4 13.9 150 339-488 92-249 (293)
163 PF05004 IFRD: Interferon-rela 95.6 0.69 1.5E-05 48.8 17.6 183 44-233 43-245 (309)
164 KOG1967|consensus 95.6 0.077 1.7E-06 61.1 10.8 188 132-348 816-1018(1030)
165 PF07814 WAPL: Wings apart-lik 95.6 0.71 1.5E-05 50.0 18.1 287 132-447 22-359 (361)
166 PF11841 DUF3361: Domain of un 95.6 0.19 4.1E-06 46.3 11.4 124 317-444 3-132 (160)
167 KOG1967|consensus 95.6 0.095 2.1E-06 60.4 11.2 218 144-398 787-1021(1030)
168 PF04078 Rcd1: Cell differenti 95.4 1.2 2.7E-05 44.5 17.1 190 257-453 11-227 (262)
169 PF13764 E3_UbLigase_R4: E3 ub 95.4 2.4 5.2E-05 50.3 22.3 239 127-424 113-385 (802)
170 PF11698 V-ATPase_H_C: V-ATPas 95.4 0.067 1.5E-06 46.6 7.4 71 738-812 43-114 (119)
171 PF12717 Cnd1: non-SMC mitotic 95.2 0.64 1.4E-05 44.8 14.4 93 102-205 1-94 (178)
172 KOG3665|consensus 95.1 0.88 1.9E-05 53.5 17.6 178 437-634 494-676 (699)
173 PF06025 DUF913: Domain of Unk 95.0 1.7 3.7E-05 47.2 18.5 108 257-365 125-243 (379)
174 PF12717 Cnd1: non-SMC mitotic 94.9 1.2 2.5E-05 43.0 15.5 93 58-161 1-93 (178)
175 KOG2956|consensus 94.9 0.75 1.6E-05 49.4 14.7 183 48-269 290-476 (516)
176 PF06371 Drf_GBD: Diaphanous G 94.8 0.09 1.9E-06 51.3 7.5 112 44-159 66-186 (187)
177 KOG3036|consensus 94.8 4.7 0.0001 39.8 19.4 148 299-453 95-256 (293)
178 PF02985 HEAT: HEAT repeat; I 94.6 0.044 9.5E-07 35.4 3.2 28 133-160 2-29 (31)
179 PF11864 DUF3384: Domain of un 94.5 6.2 0.00013 44.5 22.2 288 59-400 4-329 (464)
180 PF05004 IFRD: Interferon-rela 94.5 1.1 2.3E-05 47.4 15.0 190 135-352 47-255 (309)
181 PF05918 API5: Apoptosis inhib 94.3 10 0.00022 43.0 22.6 137 45-203 24-162 (556)
182 KOG4653|consensus 94.3 0.54 1.2E-05 54.1 12.6 192 285-489 729-921 (982)
183 PF08569 Mo25: Mo25-like; Int 94.2 0.95 2.1E-05 48.1 13.9 225 125-379 70-309 (335)
184 PF11841 DUF3361: Domain of un 93.9 1.3 2.8E-05 41.0 12.3 120 43-165 10-136 (160)
185 KOG1820|consensus 93.9 1.7 3.8E-05 51.4 16.4 169 52-231 260-429 (815)
186 PF04078 Rcd1: Cell differenti 93.9 0.36 7.8E-06 48.2 9.2 143 345-488 70-220 (262)
187 PF12719 Cnd3: Nuclear condens 93.7 1.4 3.1E-05 46.5 14.1 172 46-229 28-210 (298)
188 PF02985 HEAT: HEAT repeat; I 93.6 0.11 2.4E-06 33.5 3.5 28 416-443 2-29 (31)
189 KOG3665|consensus 93.4 8.1 0.00018 45.7 20.9 179 264-467 494-678 (699)
190 KOG4653|consensus 93.4 1.5 3.3E-05 50.6 14.1 221 94-352 733-962 (982)
191 PF07814 WAPL: Wings apart-lik 93.1 6.1 0.00013 42.8 18.2 92 90-183 23-116 (361)
192 KOG2956|consensus 92.5 4 8.6E-05 44.1 14.9 144 174-352 330-475 (516)
193 PF08045 CDC14: Cell division 92.5 3.2 6.9E-05 41.9 13.7 100 386-485 105-206 (257)
194 PF11701 UNC45-central: Myosin 92.5 0.63 1.4E-05 43.7 8.4 147 174-351 4-156 (157)
195 KOG1788|consensus 92.4 30 0.00065 41.3 22.4 115 304-424 663-784 (2799)
196 PF12719 Cnd3: Nuclear condens 92.2 3.2 7E-05 43.8 14.3 175 215-425 25-208 (298)
197 COG5116 RPN2 26S proteasome re 91.9 4.9 0.00011 44.3 14.8 125 281-428 549-676 (926)
198 PF14668 RICTOR_V: Rapamycin-i 91.8 1 2.2E-05 35.8 7.3 66 106-173 4-70 (73)
199 KOG1832|consensus 91.7 4.3 9.4E-05 47.0 14.8 160 277-456 595-785 (1516)
200 PF12530 DUF3730: Protein of u 91.5 13 0.00029 37.5 17.2 201 292-513 10-217 (234)
201 PF11701 UNC45-central: Myosin 91.3 1.6 3.5E-05 41.0 9.6 147 285-440 5-156 (157)
202 PF13764 E3_UbLigase_R4: E3 ub 91.0 6.5 0.00014 46.8 16.1 223 278-509 112-386 (802)
203 PF14668 RICTOR_V: Rapamycin-i 91.0 1.4 3E-05 35.0 7.4 67 600-738 4-70 (73)
204 PF11865 DUF3385: Domain of un 90.8 2.6 5.5E-05 39.7 10.5 133 89-231 11-143 (160)
205 PF11864 DUF3384: Domain of un 90.7 21 0.00045 40.3 19.6 61 706-766 267-329 (464)
206 PF12530 DUF3730: Protein of u 90.6 17 0.00037 36.7 16.9 140 90-270 2-151 (234)
207 PF13251 DUF4042: Domain of un 90.6 5.7 0.00012 38.1 12.6 144 298-445 1-176 (182)
208 COG5098 Chromosome condensatio 90.2 1.9 4E-05 48.6 10.0 158 46-225 893-1054(1128)
209 PF06025 DUF913: Domain of Unk 90.1 13 0.00027 40.6 16.4 151 301-454 78-243 (379)
210 PF01603 B56: Protein phosphat 89.7 26 0.00055 38.8 18.8 246 125-406 127-375 (409)
211 PF11707 Npa1: Ribosome 60S bi 89.4 6.3 0.00014 42.2 13.5 180 577-814 51-238 (330)
212 PF08569 Mo25: Mo25-like; Int 89.3 34 0.00073 36.5 25.3 207 215-454 75-297 (335)
213 KOG1243|consensus 89.0 15 0.00032 42.1 16.0 252 52-352 261-513 (690)
214 COG5656 SXM1 Importin, protein 88.7 53 0.0012 38.0 21.9 156 42-206 365-531 (970)
215 KOG4464|consensus 88.7 37 0.00081 36.3 19.9 270 177-469 49-369 (532)
216 KOG2005|consensus 88.5 51 0.0011 37.6 29.0 155 41-199 45-228 (878)
217 COG5116 RPN2 26S proteasome re 88.4 1.9 4.1E-05 47.3 8.4 99 325-443 551-650 (926)
218 PF12031 DUF3518: Domain of un 88.1 1.3 2.7E-05 43.7 6.2 82 60-143 139-228 (257)
219 KOG2025|consensus 87.7 17 0.00037 41.6 15.2 106 87-199 84-189 (892)
220 KOG1243|consensus 87.1 4.7 0.0001 45.9 10.8 213 52-311 300-514 (690)
221 KOG1820|consensus 87.0 7.7 0.00017 46.2 13.0 183 134-352 256-441 (815)
222 PF12830 Nipped-B_C: Sister ch 86.8 23 0.0005 34.3 14.4 120 41-169 5-131 (187)
223 PF11707 Npa1: Ribosome 60S bi 86.6 49 0.0011 35.4 19.9 164 42-206 54-240 (330)
224 KOG2611|consensus 86.4 44 0.00095 36.5 16.7 197 136-355 16-226 (698)
225 COG5209 RCD1 Uncharacterized p 86.4 12 0.00026 36.4 11.5 101 298-404 115-221 (315)
226 KOG2032|consensus 86.2 59 0.0013 35.9 20.8 116 323-443 252-371 (533)
227 PF10363 DUF2435: Protein of u 86.1 2.8 6E-05 35.1 6.5 84 45-141 4-87 (92)
228 PF06371 Drf_GBD: Diaphanous G 86.1 2.1 4.6E-05 41.6 6.9 82 272-353 96-186 (187)
229 KOG4464|consensus 86.0 53 0.0012 35.2 17.9 88 338-425 110-198 (532)
230 PF04063 DUF383: Domain of unk 85.5 6 0.00013 38.4 9.4 93 132-226 53-157 (192)
231 smart00638 LPD_N Lipoprotein N 85.3 17 0.00038 42.4 15.2 95 283-399 442-543 (574)
232 COG5209 RCD1 Uncharacterized p 85.3 4.8 0.00011 38.9 8.3 142 344-486 119-268 (315)
233 PF04063 DUF383: Domain of unk 84.9 6.7 0.00014 38.0 9.4 119 257-377 11-157 (192)
234 KOG2137|consensus 84.7 9.3 0.0002 43.8 11.6 96 129-231 387-482 (700)
235 KOG2032|consensus 84.6 48 0.001 36.5 16.2 90 141-231 268-357 (533)
236 KOG2999|consensus 84.5 12 0.00025 41.5 11.7 155 285-444 85-243 (713)
237 PF14225 MOR2-PAG1_C: Cell mor 84.4 52 0.0011 33.8 16.4 66 282-352 187-252 (262)
238 PF13251 DUF4042: Domain of un 83.9 8.4 0.00018 36.9 9.5 97 257-356 56-176 (182)
239 COG5098 Chromosome condensatio 83.5 31 0.00067 39.4 14.6 158 52-231 860-1023(1128)
240 PRK09169 hypothetical protein; 82.6 1.8E+02 0.004 38.7 32.3 109 89-200 164-274 (2316)
241 KOG2025|consensus 82.1 57 0.0012 37.6 16.0 129 257-398 62-190 (892)
242 PF01603 B56: Protein phosphat 82.1 29 0.00062 38.4 14.2 257 65-360 110-376 (409)
243 PF04869 Uso1_p115_head: Uso1 81.8 61 0.0013 34.2 15.8 147 296-442 51-230 (312)
244 KOG2999|consensus 81.4 47 0.001 37.0 14.7 163 133-323 85-254 (713)
245 PF08167 RIX1: rRNA processing 81.2 13 0.00029 35.1 9.8 107 48-160 29-143 (165)
246 PF01347 Vitellogenin_N: Lipop 80.4 19 0.00041 42.5 13.1 94 283-398 486-586 (618)
247 PF10363 DUF2435: Protein of u 80.1 5.6 0.00012 33.3 6.0 70 257-336 19-88 (92)
248 KOG1566|consensus 78.6 80 0.0017 32.8 14.5 203 125-355 73-287 (342)
249 smart00288 VHS Domain present 78.5 28 0.00062 31.5 10.7 80 132-211 38-119 (133)
250 KOG2611|consensus 77.8 1.2E+02 0.0025 33.5 19.4 128 52-183 18-162 (698)
251 PF14500 MMS19_N: Dos2-interac 77.2 92 0.002 32.0 15.5 222 134-401 2-237 (262)
252 PF01347 Vitellogenin_N: Lipop 77.1 18 0.00038 42.8 11.5 123 90-231 433-575 (618)
253 PF11865 DUF3385: Domain of un 76.2 16 0.00034 34.4 8.5 138 367-518 10-147 (160)
254 smart00288 VHS Domain present 75.9 32 0.0007 31.1 10.2 84 415-498 38-123 (133)
255 PLN03076 ARF guanine nucleotid 75.9 1.4E+02 0.003 39.5 19.1 101 56-161 1148-1254(1780)
256 cd03569 VHS_Hrs_Vps27p VHS dom 75.7 45 0.00098 30.6 11.2 81 131-211 41-122 (142)
257 cd03568 VHS_STAM VHS domain fa 75.3 10 0.00023 34.8 6.9 72 46-118 39-110 (144)
258 cd03569 VHS_Hrs_Vps27p VHS dom 75.2 46 0.001 30.5 11.1 86 414-499 41-127 (142)
259 KOG2137|consensus 75.1 27 0.00058 40.3 11.2 207 84-337 308-520 (700)
260 cd03561 VHS VHS domain family; 74.8 43 0.00093 30.3 10.8 74 132-205 38-114 (133)
261 PLN03076 ARF guanine nucleotid 74.6 1.6E+02 0.0036 38.9 19.3 64 142-205 1148-1214(1780)
262 cd03568 VHS_STAM VHS domain fa 74.4 12 0.00025 34.5 7.0 76 738-816 37-113 (144)
263 PF00790 VHS: VHS domain; Int 73.9 34 0.00074 31.3 10.0 81 132-212 43-127 (140)
264 smart00638 LPD_N Lipoprotein N 73.1 32 0.00068 40.2 12.1 124 89-231 394-531 (574)
265 KOG1248|consensus 72.8 2.5E+02 0.0053 34.8 42.9 161 57-228 236-403 (1176)
266 PF08167 RIX1: rRNA processing 72.4 21 0.00047 33.7 8.5 112 326-445 26-145 (165)
267 PF08506 Cse1: Cse1; InterPro 72.3 1.5E+02 0.0033 32.2 18.2 236 256-519 111-366 (370)
268 COG5218 YCG1 Chromosome conden 72.1 36 0.00077 38.2 10.8 135 58-206 63-199 (885)
269 KOG0413|consensus 71.7 2.4E+02 0.0051 34.2 29.3 35 596-635 944-978 (1529)
270 PF04388 Hamartin: Hamartin pr 71.4 84 0.0018 37.2 14.8 138 44-204 4-141 (668)
271 COG5218 YCG1 Chromosome conden 71.1 36 0.00078 38.1 10.6 101 325-436 91-192 (885)
272 cd03561 VHS VHS domain family; 70.7 58 0.0013 29.5 10.6 75 415-489 38-115 (133)
273 cd03567 VHS_GGA VHS domain fam 70.0 53 0.0011 30.0 10.1 89 64-159 20-115 (139)
274 KOG2933|consensus 69.2 11 0.00025 38.6 6.0 143 133-311 90-233 (334)
275 PF12054 DUF3535: Domain of un 68.5 1.4E+02 0.0031 33.3 15.1 111 59-174 101-211 (441)
276 PF12031 DUF3518: Domain of un 68.4 13 0.00028 36.9 6.0 81 104-185 139-228 (257)
277 KOG1410|consensus 67.7 2.4E+02 0.0052 32.6 22.1 302 46-399 7-332 (1082)
278 KOG1566|consensus 67.0 1.7E+02 0.0036 30.6 18.3 205 276-488 72-288 (342)
279 PF00790 VHS: VHS domain; Int 65.6 46 0.00099 30.4 9.0 86 415-500 43-132 (140)
280 PF08324 PUL: PUL domain; Int 64.8 1E+02 0.0022 31.8 12.6 157 90-275 65-236 (268)
281 PF04821 TIMELESS: Timeless pr 64.2 42 0.0009 34.6 9.3 85 731-815 102-210 (266)
282 cd03567 VHS_GGA VHS domain fam 62.9 30 0.00065 31.6 7.1 72 46-118 40-116 (139)
283 PF08324 PUL: PUL domain; Int 61.6 24 0.00052 36.4 7.2 109 295-408 122-238 (268)
284 KOG1832|consensus 60.8 3.6E+02 0.0078 32.4 21.0 62 427-488 675-775 (1516)
285 PF14500 MMS19_N: Dos2-interac 60.6 2.1E+02 0.0045 29.5 18.1 224 52-313 6-238 (262)
286 KOG1949|consensus 60.1 2.2E+02 0.0047 33.2 14.0 136 91-233 177-319 (1005)
287 PF08767 CRM1_C: CRM1 C termin 59.3 1.6E+02 0.0036 31.2 13.0 203 598-823 42-254 (319)
288 KOG0413|consensus 59.0 54 0.0012 39.1 9.5 135 59-211 945-1081(1529)
289 KOG2933|consensus 58.9 49 0.0011 34.2 8.3 126 257-400 104-233 (334)
290 cd03572 ENTH_epsin_related ENT 57.8 1.4E+02 0.003 26.6 10.4 91 717-815 23-121 (122)
291 KOG1992|consensus 57.3 4E+02 0.0087 31.8 30.3 238 257-519 263-518 (960)
292 PF08506 Cse1: Cse1; InterPro 57.2 1.5E+02 0.0032 32.3 12.3 122 103-231 225-361 (370)
293 PF12074 DUF3554: Domain of un 55.9 2.1E+02 0.0046 30.6 13.5 229 105-378 3-255 (339)
294 PF14225 MOR2-PAG1_C: Cell mor 55.2 2.5E+02 0.0055 28.8 16.9 215 52-311 14-253 (262)
295 PF12231 Rif1_N: Rap1-interact 55.0 3.1E+02 0.0068 29.8 19.7 217 296-520 59-298 (372)
296 KOG2213|consensus 54.6 3.1E+02 0.0067 29.6 15.5 65 46-119 27-91 (460)
297 KOG0891|consensus 52.6 2.4E+02 0.0051 38.5 14.9 160 278-444 560-720 (2341)
298 PF12074 DUF3554: Domain of un 52.4 98 0.0021 33.2 10.2 92 85-182 19-112 (339)
299 PF12830 Nipped-B_C: Sister ch 52.3 2.3E+02 0.0049 27.4 12.7 147 326-488 9-169 (187)
300 PF12463 DUF3689: Protein of u 51.1 2.9E+02 0.0064 29.0 12.7 77 705-781 107-187 (303)
301 PF10521 DUF2454: Protein of u 50.9 1.6E+02 0.0034 30.7 11.1 138 89-229 120-278 (282)
302 KOG1822|consensus 49.9 4.1E+02 0.0089 34.9 15.5 115 44-163 876-991 (2067)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 49.9 63 0.0014 28.2 6.9 70 48-117 40-114 (115)
304 PF06685 DUF1186: Protein of u 48.8 3.1E+02 0.0067 27.9 13.6 89 86-181 71-161 (249)
305 cd00197 VHS_ENTH_ANTH VHS, ENT 47.6 84 0.0018 27.5 7.3 70 739-811 38-113 (115)
306 PF10274 ParcG: Parkin co-regu 46.7 1.6E+02 0.0034 28.3 9.1 81 214-320 36-117 (183)
307 PF12231 Rif1_N: Rap1-interact 46.5 4.2E+02 0.0092 28.9 23.3 139 144-311 59-203 (372)
308 PF10274 ParcG: Parkin co-regu 46.2 2.6E+02 0.0056 26.9 10.5 70 46-119 40-110 (183)
309 PF04388 Hamartin: Hamartin pr 45.4 3.7E+02 0.008 32.0 14.1 157 326-508 5-161 (668)
310 KOG0891|consensus 45.3 2E+02 0.0044 39.0 12.7 115 284-403 649-765 (2341)
311 smart00567 EZ_HEAT E-Z type HE 45.1 24 0.00053 22.1 2.5 28 104-142 2-29 (30)
312 PRK09169 hypothetical protein; 44.3 1E+03 0.022 32.5 36.0 41 726-766 740-780 (2316)
313 PF14726 RTTN_N: Rotatin, an a 43.8 1.3E+02 0.0029 25.5 7.4 64 281-345 28-91 (98)
314 cd03565 VHS_Tom1 VHS domain fa 43.0 2.7E+02 0.0058 25.5 10.8 70 90-159 40-114 (141)
315 PF12463 DUF3689: Protein of u 42.7 3.6E+02 0.0077 28.4 11.8 79 366-447 94-177 (303)
316 PF01365 RYDR_ITPR: RIH domain 42.5 51 0.0011 32.5 5.7 116 84-205 39-171 (207)
317 PF10521 DUF2454: Protein of u 42.1 2.5E+02 0.0054 29.2 11.0 70 368-442 120-202 (282)
318 PF12054 DUF3535: Domain of un 41.6 3.2E+02 0.0069 30.6 12.2 77 146-228 102-180 (441)
319 KOG2676|consensus 41.3 27 0.0006 36.5 3.4 64 109-172 376-441 (478)
320 cd03565 VHS_Tom1 VHS domain fa 40.7 2.9E+02 0.0063 25.3 10.3 76 739-817 39-119 (141)
321 PF09324 DUF1981: Domain of un 40.3 87 0.0019 25.8 5.8 66 86-156 15-84 (86)
322 PF09324 DUF1981: Domain of un 40.3 1.1E+02 0.0024 25.2 6.4 67 735-810 14-85 (86)
323 PF14726 RTTN_N: Rotatin, an a 39.2 2.4E+02 0.0052 24.0 8.7 67 86-154 28-94 (98)
324 KOG1949|consensus 38.6 5.3E+02 0.012 30.2 12.9 194 127-354 125-331 (1005)
325 PF08389 Xpo1: Exportin 1-like 38.1 34 0.00074 31.3 3.5 47 257-307 102-148 (148)
326 COG5110 RPN1 26S proteasome re 37.7 5.6E+02 0.012 29.0 12.6 146 40-187 43-221 (881)
327 KOG1848|consensus 37.6 5.7E+02 0.012 32.6 13.8 111 332-442 1004-1131(1610)
328 PF13001 Ecm29: Proteasome sta 36.5 7E+02 0.015 28.5 21.0 113 329-444 323-444 (501)
329 KOG1848|consensus 36.0 4.1E+02 0.0088 33.8 12.2 25 787-811 1106-1130(1610)
330 KOG1993|consensus 35.7 8.4E+02 0.018 29.2 23.6 280 45-364 527-822 (978)
331 KOG1822|consensus 35.1 1.2E+03 0.027 31.0 24.2 117 132-276 877-994 (2067)
332 PF04499 SAPS: SIT4 phosphatas 34.2 70 0.0015 36.0 5.6 65 705-769 73-150 (475)
333 PF14666 RICTOR_M: Rapamycin-i 34.2 2.5E+02 0.0054 28.1 8.9 83 713-813 141-225 (226)
334 PF03378 CAS_CSE1: CAS/CSE pro 33.0 7.3E+02 0.016 27.7 15.6 35 213-272 114-148 (435)
335 KOG2229|consensus 32.8 73 0.0016 35.2 5.1 57 741-806 103-159 (616)
336 PF06685 DUF1186: Protein of u 32.1 5.6E+02 0.012 26.1 15.9 64 130-205 72-144 (249)
337 PF12783 Sec7_N: Guanine nucle 31.7 3.4E+02 0.0073 25.5 9.3 81 81-163 66-149 (168)
338 PF08216 CTNNBL: Catenin-beta- 30.7 61 0.0013 28.0 3.3 41 108-149 65-105 (108)
339 KOG2549|consensus 30.3 7.9E+02 0.017 28.0 12.4 103 46-161 209-328 (576)
340 PF13001 Ecm29: Proteasome sta 29.9 7.3E+02 0.016 28.3 13.0 160 55-231 247-429 (501)
341 PF04869 Uso1_p115_head: Uso1 29.7 7E+02 0.015 26.4 14.3 70 102-171 51-137 (312)
342 PF08711 Med26: TFIIS helical 28.9 1.3E+02 0.0028 22.0 4.5 35 777-811 13-48 (53)
343 PF12397 U3snoRNP10: U3 small 28.8 3.5E+02 0.0075 23.8 8.2 68 326-403 7-76 (121)
344 KOG2199|consensus 28.6 2.2E+02 0.0048 30.5 7.6 81 132-212 46-127 (462)
345 KOG2199|consensus 28.6 4.8E+02 0.01 28.2 9.9 91 414-504 45-136 (462)
346 KOG0392|consensus 28.1 6.1E+02 0.013 32.0 11.8 238 42-314 75-327 (1549)
347 PF04499 SAPS: SIT4 phosphatas 27.6 1.5E+02 0.0033 33.4 6.9 40 80-119 54-93 (475)
348 PF12726 SEN1_N: SEN1 N termin 27.5 1.2E+03 0.025 28.3 30.8 99 711-811 497-606 (727)
349 KOG2140|consensus 27.4 3E+02 0.0065 30.9 8.5 19 818-836 375-393 (739)
350 cd01882 BMS1 Bms1. Bms1 is an 27.3 23 0.00049 35.6 0.3 24 3-26 10-33 (225)
351 PF08216 CTNNBL: Catenin-beta- 26.3 60 0.0013 28.0 2.6 42 714-757 65-106 (108)
352 KOG2038|consensus 26.1 5.5E+02 0.012 30.4 10.6 32 739-770 305-336 (988)
353 KOG0301|consensus 26.0 1.1E+03 0.024 27.6 16.3 69 102-172 557-628 (745)
354 PF11791 Aconitase_B_N: Aconit 25.6 1.6E+02 0.0035 27.1 5.2 44 106-160 80-123 (154)
355 KOG0392|consensus 25.5 8.1E+02 0.017 31.1 12.2 242 89-401 78-325 (1549)
356 PF11791 Aconitase_B_N: Aconit 25.3 2E+02 0.0043 26.5 5.7 43 299-352 79-121 (154)
357 PF14663 RasGEF_N_2: Rapamycin 24.6 1.2E+02 0.0026 26.7 4.3 39 131-170 8-46 (115)
358 KOG0301|consensus 24.3 1.2E+03 0.026 27.3 16.8 162 257-424 560-726 (745)
359 PF06012 DUF908: Domain of Unk 24.1 2.6E+02 0.0057 29.9 7.7 64 104-168 237-305 (329)
360 KOG1087|consensus 24.0 1.7E+02 0.0036 32.8 6.1 98 719-825 25-124 (470)
361 KOG1988|consensus 23.8 1.2E+03 0.025 28.3 12.7 158 52-231 31-190 (970)
362 PF07923 N1221: N1221-like pro 23.3 1.2E+02 0.0026 31.8 4.8 58 84-142 56-127 (293)
363 KOG2073|consensus 23.2 2.1E+02 0.0045 34.6 7.0 44 705-748 201-250 (838)
364 KOG2676|consensus 23.1 1.4E+02 0.003 31.5 4.9 61 303-363 376-438 (478)
365 PF04821 TIMELESS: Timeless pr 23.0 8.4E+02 0.018 25.1 15.9 38 277-314 172-210 (266)
366 PF01365 RYDR_ITPR: RIH domain 23.0 2.7E+02 0.0058 27.3 7.0 101 276-379 36-154 (207)
367 PF01417 ENTH: ENTH domain; I 22.9 1.3E+02 0.0028 26.8 4.3 94 710-813 18-121 (125)
368 KOG4524|consensus 22.9 3.4E+02 0.0073 33.0 8.4 95 85-182 800-898 (1014)
369 smart00509 TFS2N Domain in the 22.7 2.8E+02 0.006 22.2 5.7 51 756-811 19-69 (75)
370 KOG1525|consensus 22.4 1.8E+03 0.038 28.6 23.4 147 283-443 259-405 (1266)
371 KOG1988|consensus 22.2 6.5E+02 0.014 30.3 10.4 179 283-487 102-282 (970)
372 KOG2549|consensus 21.7 9.3E+02 0.02 27.4 11.1 100 295-399 259-368 (576)
373 PF13925 Katanin_con80: con80 21.5 5.8E+02 0.012 24.0 8.6 68 90-159 30-97 (164)
374 PF08389 Xpo1: Exportin 1-like 21.5 1.1E+02 0.0023 27.9 3.7 64 88-155 82-148 (148)
375 cd03572 ENTH_epsin_related ENT 21.5 5.8E+02 0.013 22.7 8.5 95 302-401 20-119 (122)
376 KOG2149|consensus 20.6 7.4E+02 0.016 27.0 9.8 68 705-773 109-176 (393)
377 PF03130 HEAT_PBS: PBS lyase H 20.6 1.5E+02 0.0032 18.1 2.9 21 711-734 1-21 (27)
378 PF08713 DNA_alkylation: DNA a 20.5 1.2E+02 0.0027 29.7 4.1 78 282-366 119-196 (213)
379 PF04510 DUF577: Family of unk 20.4 6.9E+02 0.015 23.7 8.4 91 89-186 4-97 (174)
380 KOG2085|consensus 20.4 7.3E+02 0.016 27.1 9.5 66 387-452 148-215 (457)
381 cd00183 TFIIS_I N-terminal dom 20.1 3.4E+02 0.0073 21.7 5.7 35 777-811 37-71 (76)
382 cd08050 TAF6 TATA Binding Prot 20.0 4.9E+02 0.011 28.0 8.7 102 46-160 180-297 (343)
No 1
>KOG0166|consensus
Probab=100.00 E-value=1.3e-70 Score=579.36 Aligned_cols=487 Identities=57% Similarity=0.909 Sum_probs=438.5
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCCCh--hhHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDE--DDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN 78 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~--~~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~ 78 (845)
|||||++..+||||+||+|.+.|||+..+.....+ ...+.. ....+..+ .++.+++++.+..++.+++++++.+.+
T Consensus 22 ~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~S~~~~~q~~a~~~~rkllS~~~~ 99 (514)
T KOG0166|consen 22 MRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELLSDSQSQ-ASNLELML-AALYSDDPQQQLTATQAFRKLLSKERN 99 (514)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHH-hhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHccCCC
Confidence 79999999999999999999999998322211111 111111 12266777 899999999999999999999999999
Q ss_pred ccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHh
Q psy12605 79 PPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158 (845)
Q Consensus 79 ~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nl 158 (845)
++++.++.+|++|.+|+.|+..+++.+|.+|+|+|+++|++++++.+.++++|++|.|++++.+++.+++++|+|+|||+
T Consensus 100 ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 100 PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNI 179 (514)
T ss_pred CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcc
Confidence 99999999999999999998778899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHH
Q psy12605 159 IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWL 238 (845)
Q Consensus 159 a~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~ 238 (845)
+++++.+|+.+++.|++++|+.++..+....+.++++|+|+|||++.+|.+.+.....++|.|..++++.|++
T Consensus 180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~------- 252 (514)
T KOG0166|consen 180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEE------- 252 (514)
T ss_pred ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHH-------
Confidence 9999999999999999999999999887778999999999999999999999999999999999999999999
Q ss_pred HHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhH
Q psy12605 239 SIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318 (845)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 318 (845)
+..+|||+++||+++.++.++++++.|+++.|+.+|.+.+..++.+|++++||++.+++.+.
T Consensus 253 ------------------Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QT 314 (514)
T KOG0166|consen 253 ------------------VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQT 314 (514)
T ss_pred ------------------HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 319 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 319 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
+.++++|+++.|..++..
T Consensus 315 q~vi~~~~L~~l~~ll~~-------------------------------------------------------------- 332 (514)
T KOG0166|consen 315 QVVINSGALPVLSNLLSS-------------------------------------------------------------- 332 (514)
T ss_pred HHHHhcChHHHHHHHhcc--------------------------------------------------------------
Confidence 877777666555444431
Q ss_pred HhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHH
Q psy12605 399 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT 478 (845)
Q Consensus 399 l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~ 478 (845)
T Consensus 333 -------------------------------------------------------------------------------- 332 (514)
T KOG0166|consen 333 -------------------------------------------------------------------------------- 332 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc
Q psy12605 479 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558 (845)
Q Consensus 479 ~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 558 (845)
T Consensus 333 -------------------------------------------------------------------------------- 332 (514)
T KOG0166|consen 333 -------------------------------------------------------------------------------- 332 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRS 638 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 638 (845)
++...++++|||+||||++|++++++.++++|++|.|+.++
T Consensus 333 -----------------------------------s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l---- 373 (514)
T KOG0166|consen 333 -----------------------------------SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL---- 373 (514)
T ss_pred -----------------------------------CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH----
Confidence 11224678899999999999999999999999999999998
Q ss_pred hhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHH
Q psy12605 639 CKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWA 718 (845)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 718 (845)
.++++++|+||+|+
T Consensus 374 ------------------------------------------------------------------~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 374 ------------------------------------------------------------------QTAEFDIRKEAAWA 387 (514)
T ss_pred ------------------------------------------------------------------hccchHHHHHHHHH
Confidence 56779999999999
Q ss_pred HHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHhChHHHHHhhhc
Q psy12605 719 ISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQV----ETLANMIEECGGLDKIEMLQN 794 (845)
Q Consensus 719 l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~----~~~~~~~~e~g~~~~L~~l~~ 794 (845)
++|++..|+++++..|++.|+|++|+++|...|.+++..++++|++|++.++... +.+..+++|+||.++++.|++
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~ 467 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS 467 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999998865 789999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q psy12605 795 HENVEIYKLAYDIIERYFSEVEDEDNLGPQVTDGGFELDQNPSIPNEGFKF 845 (845)
Q Consensus 795 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (845)
|+|+++|++|..++++||..+||++...|... +|.++++ .|.+||.|
T Consensus 468 hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~--~~~~~~~--~~~~~f~f 514 (514)
T KOG0166|consen 468 HENEEIYKKAYKIIDTYFSEEDDEDDQQPTTS--QFTFQVQ--APDGGFNF 514 (514)
T ss_pred cccHHHHHHHHHHHHHhcCCCccccccccccc--ccccCCC--CCCCCCCC
Confidence 99999999999999999999977776655443 7777777 68899998
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-70 Score=530.85 Aligned_cols=485 Identities=49% Similarity=0.793 Sum_probs=437.7
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCC-CCCCChh--hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPL-ADSTDED--DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDK 77 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~-~~~~~~~--~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~ 77 (845)
+||+|++.+++|||+||+|.|+|||++.+ .++..+. +.+..+...+|.+. ..+.|+|-+.+++|+..+|++++.+.
T Consensus 25 lRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt-~~l~SdDie~q~qav~kFR~~LS~E~ 103 (526)
T COG5064 25 LRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLT-QQLFSDDIEQQLQAVYKFRKLLSKET 103 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHH-HHHhhhHHHHHHHHHHHHHHHhcccc
Confidence 58999999999999999999999999933 2222111 23333444678998 89999999999999999999999999
Q ss_pred CccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHH
Q psy12605 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 157 (845)
Q Consensus 78 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~n 157 (845)
+++++.++++|++|++|+++........+.+|+|+|+++++++....+.+++.|++|.++++|.+++.+++++++|+|||
T Consensus 104 ~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGN 183 (526)
T COG5064 104 SPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGN 183 (526)
T ss_pred CCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhcc
Confidence 99999999999999999999656666789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHH
Q psy12605 158 IIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236 (845)
Q Consensus 158 la~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~ 236 (845)
++++++.+|+.+.++|++++++.++.++. +.++.+++.|+|+|||++.+|++....+..++|.|.+++.+.|++
T Consensus 184 iAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~e----- 258 (526)
T COG5064 184 IAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPE----- 258 (526)
T ss_pred ccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHH-----
Confidence 99999999999999999999999997654 479999999999999999999999999999999999999999999
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
+..+|||+++|++++..+.++.+++.|..++|+++|.+++..++.+|++.+||++.+++.
T Consensus 259 --------------------vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 259 --------------------VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred --------------------HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcc
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L 396 (845)
+.+.++++|+++.+..+|+++.+.+|++|||+++|+.+++.++++.+++.+++|+|+.+|... +.
T Consensus 319 QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-----e~---------- 383 (526)
T COG5064 319 QTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-----EY---------- 383 (526)
T ss_pred ceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-----HH----------
Confidence 999999999999999999999999999999999999999999999999999999998887653 11
Q ss_pred HHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHH
Q psy12605 397 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 476 (845)
Q Consensus 397 ~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~ 476 (845)
T Consensus 384 -------------------------------------------------------------------------------- 383 (526)
T COG5064 384 -------------------------------------------------------------------------------- 383 (526)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcc
Q psy12605 477 VTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMS 556 (845)
Q Consensus 477 ~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~ 556 (845)
T Consensus 384 -------------------------------------------------------------------------------- 383 (526)
T COG5064 384 -------------------------------------------------------------------------------- 383 (526)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 557 CQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 557 ~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
.++++|||+++|...+.
T Consensus 384 -----------------------------------------k~kKEACWAisNatsgg---------------------- 400 (526)
T COG5064 384 -----------------------------------------KIKKEACWAISNATSGG---------------------- 400 (526)
T ss_pred -----------------------------------------HHHHHHHHHHHhhhccc----------------------
Confidence 25567777777754320
Q ss_pred hhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHH
Q psy12605 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716 (845)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 716 (845)
T Consensus 401 -------------------------------------------------------------------------------- 400 (526)
T COG5064 401 -------------------------------------------------------------------------------- 400 (526)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHhChHHHH
Q psy12605 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ-------VETLANMIEECGGLDKI 789 (845)
Q Consensus 717 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~-------~~~~~~~~~e~g~~~~L 789 (845)
..-|+.++.|++.|+|++|+++|...|.++.+.+++++.++++.|+.. .+.|..+++++|+++.+
T Consensus 401 --------~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I 472 (526)
T COG5064 401 --------LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAI 472 (526)
T ss_pred --------cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHH
Confidence 123566788999999999999999999999999999999999988764 35688999999999999
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccCCCCC
Q psy12605 790 EMLQNHENVEIYKLAYDIIERYFSEVEDEDNLGPQVTDGGFELDQNPS 837 (845)
Q Consensus 790 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (845)
..++++.|..++.+|..++++||.++|.-|++.|+..+|.|.|-.++.
T Consensus 473 ~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~ 520 (526)
T COG5064 473 HGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN 520 (526)
T ss_pred HHhhhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCcc
Confidence 999999999999999999999999999999999999999999965543
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.8e-54 Score=516.78 Aligned_cols=661 Identities=19% Similarity=0.203 Sum_probs=549.4
Q ss_pred hcHHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHH-hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 44 VNLDMLVVEAARKD--NPELQLLAVQSARKLLSSDKNPPIEALI-HSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 44 ~~i~~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
..+..++ +.|.+. .++.+..|+..|+.+...+. .+...+. ..|.+|.|+.+| .++++.+|..|+.+|.+++.+
T Consensus 13 ~~v~~Lv-e~L~s~~ss~~~~~~Al~~Lr~Lak~~~-enR~~Ia~~aGaIP~LV~lL-~sg~~~vk~nAaaaL~nLS~~- 88 (2102)
T PLN03200 13 ASVAQCI-EQLRAKSSSPQEKELTTARLLELAKTRE-EARKAIGSHSQAMPLLVSLL-RSGTLGAKVNAAAVLGVLCKE- 88 (2102)
T ss_pred HHHHHHH-HHHHcccCCHHHHHHHHHHHHHHHhcCh-HHHHHHHHccCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcC-
Confidence 4567888 788866 78899999999999887653 3455555 489999999999 467889999999999999976
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC--hhhH-HHHHhcCChhhHHhhhcCCC--CHHHHHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG--PQLR-DYVINMGVVPPLLSFIKPDI--PISFLRNVT 195 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~--~~~r-~~i~~~g~i~~Lv~ll~~~~--~~~~~~~a~ 195 (845)
++++..++..|++|+|+.+|++++.+.++.|+++|.+|+.++ +.++ ..+...|++|.|+.++++.. +..+++.++
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av 168 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHH
Confidence 788999999999999999999999999999999999999875 4455 44568999999999998753 234678889
Q ss_pred HHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh
Q psy12605 196 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ 275 (845)
Q Consensus 196 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 275 (845)
.+|.|||...+.........|++|.++.++.++++. ++..|+++|.+++.+..+.
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~-------------------------lQ~eAa~aLa~Lass~ee~ 223 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSD-------------------------AQANAASLLARLMMAFESS 223 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHHcCChHH
Confidence 999999998865555556789999999999998888 8999999999998887777
Q ss_pred HHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc---------hhhHHHH
Q psy12605 276 IQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK---------EKICKEA 345 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~---------~~~~~~a 345 (845)
+..+++.|+++.|+++|.+ +++.++..|+.+|+||+.++++.++.+++.|+++.|+.++.+++ ..+++.|
T Consensus 224 ~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~A 303 (2102)
T PLN03200 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENA 303 (2102)
T ss_pred HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHH
Confidence 8888999999999999975 45689999999999999999999999999999999999997544 3468999
Q ss_pred HHHHHHhhcCChHHHHH-----------------------H-------------Hh-cCChHHHHHHhhhcccc------
Q psy12605 346 VWFLSNITAGNQAQVQA-----------------------V-------------ID-AGLLPKIIANLQKVGRI------ 382 (845)
Q Consensus 346 ~~~L~nl~~~~~~~~~~-----------------------l-------------~~-~~~i~~Lv~lL~~~~~~------ 382 (845)
.|+|+|+|.+....... + ++ ..+.+.|++++++..+.
T Consensus 304 vwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V 383 (2102)
T PLN03200 304 MGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERI 383 (2102)
T ss_pred HHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHH
Confidence 99999998753220000 0 11 11234455555432110
Q ss_pred -------------------------------cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHH
Q psy12605 383 -------------------------------VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 431 (845)
Q Consensus 383 -------------------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 431 (845)
..+.++|..++|+|.+++.++.+.++.+.+.|+++.|+++|.+++..++
T Consensus 384 ~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ 463 (2102)
T PLN03200 384 IEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQ 463 (2102)
T ss_pred HHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHH
Confidence 0246899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCC
Q psy12605 432 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 432 ~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
..|+|+|++++..+.+.+..+.++|+++.|+++|.+. +.++++.++|+++|++.+...........++++.|..++.+.
T Consensus 464 ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg 542 (2102)
T PLN03200 464 EYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG 542 (2102)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999999998988999999999999999999865 458999999999999985421111122247999999999999
Q ss_pred ChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccC---CChhhHHHHHhCCccc
Q psy12605 512 DTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP---GTDEQTQVILNCDALS 586 (845)
Q Consensus 512 d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~---~~~~~~~~l~~~~~l~ 586 (845)
+..+... +| +.++....+. ..++.++.++.+++..... .++.+++|+.. +++..++.....|+++
T Consensus 543 d~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv~LLlsdd~~~~~--~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~ 612 (2102)
T PLN03200 543 GPKGQEIAAKTLTKLVRTADA--------ATISQLTALLLGDLPESKV--HVLDVLGHVLSVASLEDLVREGSAANDALR 612 (2102)
T ss_pred CHHHHHHHHHHHHHHHhccch--------hHHHHHHHHhcCCChhHHH--HHHHHHHHHHhhcchhHHHHHhhhccccHH
Confidence 8888765 67 7777654332 2446788888887765433 36778887744 3333444455789999
Q ss_pred chHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHh
Q psy12605 587 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQN 666 (845)
Q Consensus 587 ~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (845)
.|..+++++++.+++.|+|+|+|++.+++.+++.++..|++|.++.+|
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-------------------------------- 660 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-------------------------------- 660 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred hHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhh
Q psy12605 667 VEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDL 746 (845)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~ 746 (845)
.+++.+++++++|+|.+++..++.++...+++.|++++|+++
T Consensus 661 --------------------------------------ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 661 --------------------------------------TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred --------------------------------------hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence 567778999999999999977788888888999999999999
Q ss_pred hccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhcCcccCCC
Q psy12605 747 LSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED 819 (845)
Q Consensus 747 L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 819 (845)
|+..|.+++..++.+|.+++..++. ...+.+.|++..|..++.+.+++.++-|.+.|.+......-+|
T Consensus 703 L~~~d~~v~e~Al~ALanLl~~~e~-----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 703 AKSSSIEVAEQAVCALANLLSDPEV-----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred HhCCChHHHHHHHHHHHHHHcCchH-----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 9999999999999999999998874 3556778999999999999999999999999998887776554
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.3e-53 Score=506.40 Aligned_cols=690 Identities=17% Similarity=0.191 Sum_probs=557.1
Q ss_pred hhcHHHHHHHHHcCCC---hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 43 QVNLDMLVVEAARKDN---PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~---~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
...++.++ ..+.+.+ ...+..|+.+|++++...+ .....+++.|++|.|+.+|+ ++++..|..|+++|.+++.+
T Consensus 143 ~GaVp~Lv-~lL~~gsk~d~~L~~~Av~AL~nLs~~~e-n~~~~IIeaGaVp~LV~LLs-S~d~~lQ~eAa~aLa~Lass 219 (2102)
T PLN03200 143 EGVVPSLW-DQLQPGNKQDKVVEGLLTGALRNLCGSTD-GFWSATLEAGGVDILVKLLS-SGNSDAQANAASLLARLMMA 219 (2102)
T ss_pred cCChHHHH-HHHhCCchhhHHHHHHHHHHHHHHhcCcc-chHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcC
Confidence 44578888 8888763 3355667889999877653 35577889999999999995 67899999999999999988
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC--------CHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI--------PISF 190 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~--------~~~~ 190 (845)
.++.+..+++.|+||.|+++|+++ ++.+|+.|+|+|+||+.+++++++.+++.|+++.|++++..+. ...+
T Consensus 220 ~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~L 299 (2102)
T PLN03200 220 FESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQAL 299 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHH
Confidence 788999999999999999999864 5699999999999999999999999999999999999997432 3467
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC-CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh-
Q psy12605 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH-DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL- 268 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l- 268 (845)
+++|+|+|+|+|.+. ..+++.|..++.+. |.. ...+++|++.|+
T Consensus 300 qe~AvwALsNIcgg~---------~~ll~~L~~ll~s~rd~~-------------------------~~ada~gALayll 345 (2102)
T PLN03200 300 QENAMGALANICGGM---------SALILYLGELSESPRSPA-------------------------PIADTLGALAYAL 345 (2102)
T ss_pred HHHHHHHHHHHhCCc---------hhhHHHHHHhhcccchHH-------------------------HHHHHHhhHHHHH
Confidence 999999999999875 46889999888764 444 778999999998
Q ss_pred --hcCChhhHHHHHhcCchhhHHhhccCCchh-hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHH
Q psy12605 269 --TDGGNDQIQMVIDSGVVPSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345 (845)
Q Consensus 269 --~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a 345 (845)
.+.+.+..+.+-...+++.|+.+++++++. ++..+..+|..+. ++...++.+.+.++++.|+.++...+.+++..+
T Consensus 346 ~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~-gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A 424 (2102)
T PLN03200 346 MVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY-GNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424 (2102)
T ss_pred HhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence 445544444332235669999999888666 4888899998874 557777888889999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 346 ~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
+|+|++++.++.+.++.+.+.|++|.|+++|.++ +..+|..|+|++++++.++.+.+..+++.|++|.|+++|.+
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999984 78999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHH
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 505 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~ 505 (845)
++..+++.|+|+|+|++.++++.+..+.++|+++.|+++|++. +.+.++.++|+|.|+..+.. .+.++.+.
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d--------~~~I~~Lv 570 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTAD--------AATISQLT 570 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccc--------hhHHHHHH
Confidence 9999999999999999999889999999999999999999876 45889999999999987653 23457778
Q ss_pred HhhcCCChhHHHHHH--HHhhhc---CchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHH
Q psy12605 506 ILIHHHDTSVSIYLW--LSIIEK---NPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVIL 580 (845)
Q Consensus 506 ~ll~~~d~~v~~~~~--l~~l~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~ 580 (845)
.++.+.++.+...+. +..+.. ..+.........+.++.|++++.+++..+ +..+..++.++..+...+.+.++
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~i--kk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEET--QEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHH--HHHHHHHHHHHhcCChHHHHHHH
Confidence 888888888777654 444322 22222222335689999999999987654 44467899999999999999999
Q ss_pred hCCcccchHHhhcCCChhHHHHHHHHHhhhccC-CHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHH
Q psy12605 581 NCDALSHFPALLTHPKEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQ 659 (845)
Q Consensus 581 ~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (845)
..|+++.++.++.+.+.+++++++|+|+|++.+ .+.++..+++.|++|.|+++|...+.+.. ...
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~--------------e~A 714 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA--------------EQA 714 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH--------------HHH
Confidence 999999999999999999999999999999964 44555677899999999999954322111 111
Q ss_pred HHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHH-H-HHHHHc
Q psy12605 660 MSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQ-V-AKLVQE 737 (845)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~-~~l~~~ 737 (845)
+..+.....+.-.. ..+..+|++ ..++.++.+++++.|+.|+|+|.++|...+.++ . ..+...
T Consensus 715 l~ALanLl~~~e~~--------~ei~~~~~I-------~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~ 779 (2102)
T PLN03200 715 VCALANLLSDPEVA--------AEALAEDII-------LPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCR 779 (2102)
T ss_pred HHHHHHHHcCchHH--------HHHHhcCcH-------HHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHh
Confidence 11111111100000 001111221 112344589999999999999999997666655 3 455588
Q ss_pred CCchHHhhhhccccHHHHHH--HHHHHHHHHHhhHHH---HHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhc
Q psy12605 738 GVIPPFCDLLSCKDAQVIQV--VLDGINNMLKMADAQ---VETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 738 ~~i~~L~~~L~~~d~~~~~~--al~~L~~l~~~~~~~---~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
|.+.+|+++|+..|.+.... ++++|..+.+..+.. .+++...++..+.+++|...+.++++.++++|.++|+++-
T Consensus 780 g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 780 GTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLC 859 (2102)
T ss_pred CcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999988887776 999999999975442 2457778899999999976669999999999999999987
Q ss_pred Ccc
Q psy12605 813 SEV 815 (845)
Q Consensus 813 ~~~ 815 (845)
+..
T Consensus 860 ~~~ 862 (2102)
T PLN03200 860 RDQ 862 (2102)
T ss_pred ccC
Confidence 654
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-46 Score=364.37 Aligned_cols=303 Identities=45% Similarity=0.701 Sum_probs=279.7
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHh-hcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNI-TAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl-~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
-+|.+.+-|.+.|-+.+..|..-+..+ +....+.++.++++|++|.++++|... ...-++.+|+|+|.|++++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~----q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI----QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc----chhHHHHHHHHHHhhhccCcc
Confidence 457788888888877777777766664 344556678999999999999999765 477889999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC-ChhHHHHHHHHHHH
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVN 483 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~~~~~~l~n 483 (845)
...+.+++.|++|.|+++|.+++.+|+++++|+|+|++++++.+|+.++++|++++++.++.+.. ...+.|++.|+|+|
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987544 47899999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHH-HHHH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVS-IYLW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~-~~~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
|||++.|+|+...+...+|.|..|+.+.|+++. ++|| ++||++++...+..+.+.|+.++|+++|.|++..+ +.++
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i--qtPa 305 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI--QTPA 305 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc--cCHH
Confidence 999999999999999999999999999999976 5599 99999999999999999999999999999988877 4568
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 634 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll 634 (845)
++.++|+..|++.+++.++++|+++++..+|++++..++++|||+|+|+++++.++++.+++.+++|.|+.+|
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>KOG0166|consensus
Probab=100.00 E-value=2.1e-41 Score=358.05 Aligned_cols=372 Identities=35% Similarity=0.566 Sum_probs=327.0
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCC-hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGN-QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
.+.++..+.+.+...+..+...+..+.+.. .+.+..++..|++|.+|++|... .++.++.+|+|+|.|+++++++
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~----~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD----DNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC----CChhHHHHHHHHHHHHhcCchh
Confidence 566777788888888888888888775532 24557777789999999999875 5799999999999999999999
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
..+.+++.|+++.|++++.+++.+|+++|+|+|+|++++++.+|+.++++|++++|+.++.......+.|+++|+++|||
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887889999999999999
Q ss_pred cCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccc
Q psy12605 486 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHS 563 (845)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~ 563 (845)
+++.|.+++..+..++|.|..++++.|++|... || ++||+++++..+.++.+.|++++|+.+|.+
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~------------- 290 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH------------- 290 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-------------
Confidence 999999999999999999999999999999765 89 999999888777666666666655555554
Q ss_pred ccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhh
Q psy12605 564 IYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILN 643 (845)
Q Consensus 564 ~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~ 643 (845)
+++.++..|+.+++|++.|++.+.+.++++|++|.|..++.
T Consensus 291 -------------------------------~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~-------- 331 (514)
T KOG0166|consen 291 -------------------------------SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS-------- 331 (514)
T ss_pred -------------------------------CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc--------
Confidence 44455667888888989999999999999999999998883
Q ss_pred hcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhc
Q psy12605 644 KYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723 (845)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~ 723 (845)
.+....+|++|||++.|++
T Consensus 332 -------------------------------------------------------------~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 332 -------------------------------------------------------------SSPKESIKKEACWTISNIT 350 (514)
T ss_pred -------------------------------------------------------------cCcchhHHHHHHHHHHHhh
Confidence 3555569999999999999
Q ss_pred ccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHH
Q psy12605 724 ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKL 803 (845)
Q Consensus 724 ~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~ 803 (845)
.|++++.++++++|+++.|+.+|+..+.++++-|.|++.|+...+... -..++-+.|.++.+.+|+.-.+..+...
T Consensus 351 -AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~---qi~yLv~~giI~plcdlL~~~D~~ii~v 426 (514)
T KOG0166|consen 351 -AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE---QIKYLVEQGIIKPLCDLLTCPDVKIILV 426 (514)
T ss_pred -cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH---HHHHHHHcCCchhhhhcccCCChHHHHH
Confidence 799999999999999999999999999999999999999999877643 3567889999999999998889889999
Q ss_pred HHHHHHHhcCcccCCC
Q psy12605 804 AYDIIERYFSEVEDED 819 (845)
Q Consensus 804 a~~~l~~~~~~~~~~~ 819 (845)
+.+.++.++..-+.+-
T Consensus 427 ~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEK 442 (514)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999998886665444
No 7
>KOG4224|consensus
Probab=99.97 E-value=5.8e-30 Score=251.51 Aligned_cols=475 Identities=21% Similarity=0.276 Sum_probs=372.7
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
+..+ ..|+.+++-..+..|+-+...+... ... -+.....+++.-+++++++.++..+..++||++-. .+++..+
T Consensus 49 lral-tvL~ySDnlnlqrsaalafAeitek---~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~li 122 (550)
T KOG4224|consen 49 LRAL-TVLKYSDNLNLQRSAALAFAEITEK---GVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLI 122 (550)
T ss_pred cchh-eeeeeccccccchHHHHHHHHHHHH---HHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEE
Confidence 4443 3445678888888888887777532 222 23446888999999999999999999999999954 4577777
Q ss_pred HhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHH
Q psy12605 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 249 (845)
Q Consensus 170 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~ 249 (845)
++.+++++|+.-+..+ ...++.
T Consensus 123 v~l~Gl~~Li~qmmtd-~vevqc--------------------------------------------------------- 144 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTD-GVEVQC--------------------------------------------------------- 144 (550)
T ss_pred EeccChHHHHHHhcCC-CcEEEe---------------------------------------------------------
Confidence 7777877776544433 123333
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccch
Q psy12605 250 ILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329 (845)
Q Consensus 250 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~ 329 (845)
.+..|+.+++..+++ +-.+...|++.++..+-++++..++.++.++|.|++.. .+.++.++..|++|.
T Consensus 145 ----------naVgCitnLaT~d~n-k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpv 212 (550)
T KOG4224|consen 145 ----------NAVGCITNLATFDSN-KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPV 212 (550)
T ss_pred ----------eehhhhhhhhccccc-hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchh
Confidence 444444444444322 34456889999999988899999999999999999654 667888999999999
Q ss_pred hhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC--ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 330 FPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG--LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 330 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~--~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
|+.++++++.+++..++.+++|++.. ...++.+.+.+ ++|.|+.++.++ ++.+|..|..+|.++++.. ++.
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~-----s~kvkcqA~lALrnlasdt-~Yq 285 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDG-----SDKVKCQAGLALRNLASDT-EYQ 285 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCC-----ChHHHHHHHHHHhhhcccc-hhh
Confidence 99999999999999999999999554 55567777766 999999999985 8999999999999998754 688
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 408 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 408 ~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
..+++.|++|.++++++++........+.|+.|++.+.- ..-.+.+.|.+.+|+++|...++++++.+++.+++||+..
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 899999999999999999998899999999999997643 3456789999999999999988889999999999998753
Q ss_pred CCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccccccc
Q psy12605 488 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMC 567 (845)
Q Consensus 488 ~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~n 567 (845)
..
T Consensus 365 se------------------------------------------------------------------------------ 366 (550)
T KOG4224|consen 365 SE------------------------------------------------------------------------------ 366 (550)
T ss_pred hh------------------------------------------------------------------------------
Confidence 31
Q ss_pred ccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhccc
Q psy12605 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLD 647 (845)
Q Consensus 568 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~ 647 (845)
.....+.+.|++|.++.++-+..-+++.+.-.+++-++.+ +.....+.+.|++|.|+..+
T Consensus 367 ------~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t------------- 426 (550)
T KOG4224|consen 367 ------HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWT------------- 426 (550)
T ss_pred ------hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeeccc-------------
Confidence 1225677888999999999888889999999999988754 44467889999999988655
Q ss_pred CCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCC
Q psy12605 648 NNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGN 727 (845)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 727 (845)
.+.+.+++-.|+.+|+|++ .+
T Consensus 427 ---------------------------------------------------------~s~s~Ev~gNaAaAL~Nls--s~ 447 (550)
T KOG4224|consen 427 ---------------------------------------------------------GSESEEVRGNAAAALINLS--SD 447 (550)
T ss_pred ---------------------------------------------------------CccchhhcccHHHHHHhhh--hh
Confidence 5677899999999999998 56
Q ss_pred HHHHHHHHHc------CCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHH
Q psy12605 728 RDQVAKLVQE------GVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIY 801 (845)
Q Consensus 728 ~~~~~~l~~~------~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~ 801 (845)
.++...+++. |.-..|++++.+++-.+...+.+.+..|++.++. ++..+..+.+. +.
T Consensus 448 v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~----------------~~~~~i~~~dd-ii 510 (550)
T KOG4224|consen 448 VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL----------------PLTAFIQSSDD-II 510 (550)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc----------------cHHHHHhCchh-HH
Confidence 7777777654 5566788999999999999999999999876653 34444433333 55
Q ss_pred HHHHHHHHHhcCcccCCCCCC
Q psy12605 802 KLAYDIIERYFSEVEDEDNLG 822 (845)
Q Consensus 802 ~~a~~~l~~~~~~~~~~~~~~ 822 (845)
+.+..+++|.-..-+++|+.|
T Consensus 511 ~~~~~~~~r~~~~g~~~~~~g 531 (550)
T KOG4224|consen 511 ELLNDIVARDANNGEYEDGEG 531 (550)
T ss_pred HHHHHHHHHhccCCcccCCCC
Confidence 777788887665555555443
No 8
>KOG4224|consensus
Probab=99.97 E-value=6.9e-29 Score=243.97 Aligned_cols=361 Identities=19% Similarity=0.245 Sum_probs=313.5
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
...+..-++ .+.++.++..+..++++++- +.+++-.+++.+++.+|+.-+.++..++|..++.|++|++.. .+++..
T Consensus 86 s~epvl~ll-qs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~k 162 (550)
T KOG4224|consen 86 SNEPVLALL-QSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVK 162 (550)
T ss_pred hhhHHHHHH-hCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhh
Confidence 455556666 46788999999999999996 467888899999999999999999999999999999999977 579999
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
+...|++.++++ |.+..+..+++++..+|.|+....+..+. ....|.+|.|+.++.+.|++
T Consensus 163 iA~sGaL~pltr-LakskdirvqrnatgaLlnmThs~EnRr~-LV~aG~lpvLVsll~s~d~d----------------- 223 (550)
T KOG4224|consen 163 IARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRV-LVHAGGLPVLVSLLKSGDLD----------------- 223 (550)
T ss_pred hhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhh-hhccCCchhhhhhhccCChh-----------------
Confidence 999999999999 54445789999999999999998865444 45789999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC--chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG--VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++.+++.++.+++-.... ++.+++.+ +++.|+.++.+++++++..|..+|+|++...+. +..+.+.|.
T Consensus 224 --------vqyycttaisnIaVd~~~-Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~ 293 (550)
T KOG4224|consen 224 --------VQYYCTTAISNIAVDRRA-RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGS 293 (550)
T ss_pred --------HHHHHHHHhhhhhhhHHH-HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCC
Confidence 999999999999865444 45666777 999999999999999999999999999877544 556889999
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
+|.+++++.++.-....+...|+.|++-+.- ....+++.|++.+|+.+|... ++.++|..|..+|.+++..+...
T Consensus 294 lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~----dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 294 LPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAG----DNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred chHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcC----CchhhhhhHHHHHHHHhhhhhhh
Confidence 9999999998888888888999999977643 335678899999999999987 68889999999999999988899
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
.+.++++|+++.+..++.+....++.....|+..++... ..+..+.++|+++.|+.++.+.+ .+++-+++.++.|+|.
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSES-EEVRGNAAAALINLSS 446 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccc-hhhcccHHHHHHhhhh
Confidence 999999999999999999999999999999999988754 46889999999999999987654 5888889999999885
Q ss_pred CC
Q psy12605 487 NK 488 (845)
Q Consensus 487 ~~ 488 (845)
..
T Consensus 447 ~v 448 (550)
T KOG4224|consen 447 DV 448 (550)
T ss_pred hh
Confidence 44
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=1.5e-21 Score=219.95 Aligned_cols=511 Identities=16% Similarity=0.224 Sum_probs=368.8
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-cCChHHHHHhhCC---CChhHHHHHHHHHHHhcCCChh
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMS---PHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g~i~~L~~lL~s---~~~~v~~~a~~~L~nla~~~~~ 164 (845)
=++..+++|- ++. ..+..++..+..||.. +++-..++. .-++..|.+.|.. .+.++....+.+...++..+ +
T Consensus 124 ~~d~yiE~lY-e~~-~ek~~~~~~il~La~~-~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~-~ 199 (708)
T PF05804_consen 124 DLDEYIELLY-EDI-PEKIRGTSLILQLARN-PENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS-Q 199 (708)
T ss_pred HHHHHHHHHh-ccc-HHHHHHHHHHHHHhCC-cchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH-H
Confidence 3667788884 444 4478888999999975 777777665 5678888888855 36677777888888887543 3
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC--C-CCChhHHhhHHHHHHhhcccCCchhhHHHHHHHh
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD--P-PPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 241 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~ 241 (845)
+-..+....+-...++++.. ++++.-.|.=.-..+... . +............+-.++...
T Consensus 200 fH~~l~~~kiG~l~m~iie~----Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQ------------- 262 (708)
T PF05804_consen 200 FHPILAHYKIGSLCMEIIEH----ELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQ------------- 262 (708)
T ss_pred HHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHH-------------
Confidence 55555544333334455543 466655553211111100 0 000001111222222222222
Q ss_pred hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHH
Q psy12605 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i 321 (845)
..+...++..|.++++...... .+.+.|+++.|+.+|+.++.++...++.+|.+|+.. .+.+..+
T Consensus 263 -------------eqLlrv~~~lLlNLAed~~ve~-kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m 327 (708)
T PF05804_consen 263 -------------EQLLRVAFYLLLNLAEDPRVEL-KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEM 327 (708)
T ss_pred -------------HHHHHHHHHHHHHHhcChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 2255677888999998765544 456999999999999999999999999999999876 4568889
Q ss_pred hcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 322 LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
.+.|+++.|.+++.+++.+++..++.+|.|++. +++.+..+++.|++|.|+.++.+ +..+..+..+|.+++.
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d-------~~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKD-------PNFREVALKILYNLSM 399 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCC-------CchHHHHHHHHHHhcc
Confidence 999999999999999999999999999999954 56778999999999999999965 3455668888888877
Q ss_pred CChHhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHH
Q psy12605 402 GTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV 480 (845)
Q Consensus 402 ~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~ 480 (845)
. .+.+..+...++++.+++++.+ +++.+...+++.+.|++.+.... +.+.+.|+++.|++..-+..+ .....+
T Consensus 400 d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra~~~~D----~lLlKl 473 (708)
T PF05804_consen 400 D-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRALKTRD----PLLLKL 473 (708)
T ss_pred C-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHHHhccc----HHHHHH
Confidence 4 4667788888999999997654 66778888899999999877554 677788899999977644333 123346
Q ss_pred HHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccc
Q psy12605 481 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKK 560 (845)
Q Consensus 481 l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~ 560 (845)
++|++.+.++.. ....+
T Consensus 474 IRNiS~h~~~~k--~~f~~------------------------------------------------------------- 490 (708)
T PF05804_consen 474 IRNISQHDGPLK--ELFVD------------------------------------------------------------- 490 (708)
T ss_pred HHHHHhcCchHH--HHHHH-------------------------------------------------------------
Confidence 777776652100 01111
Q ss_pred cccccccccCCChhhHHHHHhCCcccchHHhhcC-CChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhh
Q psy12605 561 QHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSC 639 (845)
Q Consensus 561 ~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 639 (845)
++..|..++.. .+++..-+++++|+|+...+....+.+.+.+++|.+.++|..
T Consensus 491 -----------------------~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~--- 544 (708)
T PF05804_consen 491 -----------------------FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP--- 544 (708)
T ss_pred -----------------------HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC---
Confidence 12222233333 356788899999999997766666666678999999998842
Q ss_pred hhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHH
Q psy12605 640 KILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAI 719 (845)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 719 (845)
...++++.-+++.++
T Consensus 545 -----------------------------------------------------------------g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 545 -----------------------------------------------------------------GASEDDLLLEVVILL 559 (708)
T ss_pred -----------------------------------------------------------------CCCChHHHHHHHHHH
Confidence 334557899999999
Q ss_pred HhhcccCCHHHHHHHHHcCCchHHhhhhcc--ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCC
Q psy12605 720 SNLTISGNRDQVAKLVQEGVIPPFCDLLSC--KDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHEN 797 (845)
Q Consensus 720 ~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~--~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~ 797 (845)
+.++ .+++-...+++.|.++.|+.+|.. .|.+++.+.+.+++.++.+.+.. ...+.+.+++..|.+++++.|
T Consensus 560 gtla--~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr----~~ll~~~~~~~ylidL~~d~N 633 (708)
T PF05804_consen 560 GTLA--SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR----EVLLKETEIPAYLIDLMHDKN 633 (708)
T ss_pred HHHH--CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH----HHHHhccchHHHHHHHhcCCC
Confidence 9998 577777788899999999999987 58899999999999999987653 356688999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12605 798 VEIYKLAYDIIE 809 (845)
Q Consensus 798 ~~v~~~a~~~l~ 809 (845)
.++++.|...|.
T Consensus 634 ~~ir~~~d~~Ld 645 (708)
T PF05804_consen 634 AEIRKVCDNALD 645 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999887655554
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=4e-21 Score=216.50 Aligned_cols=386 Identities=17% Similarity=0.256 Sum_probs=307.0
Q ss_pred ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH
Q psy12605 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~ 137 (845)
.......++..|.++.... .....+.+.|+++.|+.+|+ .++.++...++.+|.+|+-. .+++..+.+.|+|+.|+
T Consensus 262 QeqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ld-r~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLD-RENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHH
Confidence 3444456666677765433 34567889999999999995 56789999999999999865 78999999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhH
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL 217 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 217 (845)
+++.+++.+++..++++|.|++.+ ++.|..+++.|++|.|+.++..+ ..+..+..+|.+++.+.+ ...+....++
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~-~r~~f~~Tdc 412 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDE-ARSMFAYTDC 412 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHh-hHHHHhhcch
Confidence 999999999999999999999955 67999999999999999999865 466779999999999874 4455566789
Q ss_pred HHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCc
Q psy12605 218 LPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296 (845)
Q Consensus 218 l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 296 (845)
+|.+++++.. +++. +...+.+.+.+++....+ .+.+++.++++.|+...-...
T Consensus 413 Ip~L~~~Ll~~~~~~-------------------------v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~ 466 (708)
T PF05804_consen 413 IPQLMQMLLENSEEE-------------------------VQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTR 466 (708)
T ss_pred HHHHHHHHHhCCCcc-------------------------ccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcc
Confidence 9999997654 4554 556678888888876544 577888889999988874433
Q ss_pred hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 297 ~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
.. ..++.++|++.+++..+..+. +.+..|+.++.. .+++...+++++|+|+...+.+..+.+.+.+++|.|...
T Consensus 467 D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~ 541 (708)
T PF05804_consen 467 DP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDL 541 (708)
T ss_pred cH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHH
Confidence 32 245799999988765555444 477777888866 468899999999999987766665555668999999999
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 453 (845)
|..+. ..+++..+++..++.++. ++.....+.+.|.++.|+.++.+ ++.++..+.++++.++..+.+.....+.
T Consensus 542 L~~g~---~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~ 617 (708)
T PF05804_consen 542 LKPGA---SEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK 617 (708)
T ss_pred hCCCC---CChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 98664 467899999999998875 66788888999999999999986 5688999999999999999765554445
Q ss_pred hCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 454 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 454 ~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.++...|+.++++.. .++++.|-.+|.-++...
T Consensus 618 ~~~~~~ylidL~~d~N-~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKN-AEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ccchHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhC
Confidence 6788888889887654 477777766666665433
No 11
>KOG1048|consensus
Probab=99.81 E-value=2.2e-18 Score=189.20 Aligned_cols=395 Identities=19% Similarity=0.222 Sum_probs=279.4
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
+.+.++++.+ .+|.+.++..|-.|...+.+++... +..+..+.+.|.|+.||.+| .+.+++++.+|+++|.||..++
T Consensus 230 w~d~~lpe~i-~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll-~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 230 WRDPTLPEVI-SMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALL-DHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccccccHHHH-HHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHh-cCCcHHHHHHHHHHHHhhhccc
Confidence 5677899999 9999999999999999999886644 55667888999999999999 5788999999999999999876
Q ss_pred hh--hHHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc--------CCCC--
Q psy12605 121 SA--QTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--------PDIP-- 187 (845)
Q Consensus 121 ~~--~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--------~~~~-- 187 (845)
.. ++-++.+.++|+.++++|.. .|.++++....+|+||++. +.++..++.. ++..|.+-+- ++.+
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccc
Confidence 55 88899999999999999986 6899999999999999965 4566655543 4555554432 1212
Q ss_pred ---HHHHHHHHHHHHHhhcC-CCCCCChhHHhhHHHHHHhhccc------CCch---hhHHHHHHHhhhC----hh-hHH
Q psy12605 188 ---ISFLRNVTWVIVNLCRN-KDPPPSMSTIIELLPALNILIHH------HDTS---VSIYLWLSIIEKN----PQ-ISK 249 (845)
Q Consensus 188 ---~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~------~~~~---~~~~~~~~l~~~~----~~-~~~ 249 (845)
.++..+++.+|.|++.. .+..+.+....|.+..|+..+.+ .|.. .-++.++++...- |+ ..+
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~ 464 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQ 464 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhh
Confidence 57888999999999984 34444555566888888776652 1221 2222222221100 00 000
Q ss_pred hhhh-h----HHHHHHHHHHHHHhhcC---------------ChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHH
Q psy12605 250 ILVS-K----MKILVDTVWALSYLTDG---------------GNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVG 308 (845)
Q Consensus 250 ~~~~-~----~~~~~~a~~~L~~l~~~---------------~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~ 308 (845)
..-. + .+-......|.....+. .+...+++....++..-..+| .+.+..+.++++++|.
T Consensus 465 ~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQ 544 (717)
T KOG1048|consen 465 VLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQ 544 (717)
T ss_pred HhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHh
Confidence 0000 0 00000000001100000 000112233334555545555 4567889999999999
Q ss_pred HHhcCCh----hhHHHH-hcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc-
Q psy12605 309 NIVTGTD----EQTQVI-LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI- 382 (845)
Q Consensus 309 nl~~~~~----~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~- 382 (845)
|++.+.. ..+..+ ....+++.|+.+|..+++.+...++.+|.|++.+... +.++...+++.|+..|.....+
T Consensus 545 NltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~ 622 (717)
T KOG1048|consen 545 NLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPST 622 (717)
T ss_pred hhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCc
Confidence 9997653 344444 6778999999999999999999999999999766432 5566689999999999887531
Q ss_pred cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCC-HHHHHHHHHHHHHhh
Q psy12605 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH-SNVCEQAVWALGNII 442 (845)
Q Consensus 383 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~nl~ 442 (845)
..+.++...+|.+|.++...+....+.+.+.++++.|+.+..+.. +.+.++|...|..|=
T Consensus 623 ~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 623 SLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred CchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 134788999999999999999999999999999999999998754 466777666666554
No 12
>KOG1048|consensus
Probab=99.78 E-value=2.3e-17 Score=181.19 Aligned_cols=411 Identities=15% Similarity=0.182 Sum_probs=297.2
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH--HHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA--QVQ 361 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~~ 361 (845)
-++..+.+|.+.++.++..|...+..+|.++...+..+.+.|+++.|+.+|.+...++++.||++|.|+..+... ..-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 356778888999999999999999999999999999999999999999999999999999999999999987666 666
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC--------------C
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--------------H 427 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--------------~ 427 (845)
.+.+.++++.++++++.. .+.+++..+..+|+||.+.+ ..+..+-..++..|...+-.+ .
T Consensus 314 ai~~~~Gv~~l~~~Lr~t----~D~ev~e~iTg~LWNLSS~D--~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHT----QDDEVRELITGILWNLSSND--ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred hhhhcCChHHHHHHHHhh----cchHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhhcccccccCCCCccccccc
Confidence 778899999999999986 48899999999999999873 333333334444444443321 3
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHhccC-----CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHH
Q psy12605 428 SNVCEQAVWALGNIIGDGPQLRDYVIN-MGVVPPLLSFIK-----PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 501 (845)
Q Consensus 428 ~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~-----~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l 501 (845)
.++...+..||.|++..+.+.|..+.+ .|.|..|+.+++ ...+.+-.++|+..+.|+.....- +.-....
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~----Evp~~~~ 463 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEA----EVPPKYR 463 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhh----hcCHhhh
Confidence 567889999999999998888888875 478899998876 344567889999999999875421 0001111
Q ss_pred HHHH---HhhcCCChhHHHHHH---HHh---------hhcC--chhhHHHHhhhhhhHHHHhhhccCCCCcccccccccc
Q psy12605 502 PALN---ILIHHHDTSVSIYLW---LSI---------IEKN--PQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI 564 (845)
Q Consensus 502 ~~l~---~ll~~~d~~v~~~~~---l~~---------l~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~ 564 (845)
+.+. ....-..+.-...|| ... +... +.....+.-+..++..-+.||. ...+..+..++..+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~-~s~n~~TlEasaGa 542 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLA-LSKNDNTLEASAGA 542 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHH-HhcchHHHHHhhhh
Confidence 1111 000000000011133 111 0000 0001112233344444444444 22223344567788
Q ss_pred cccccCCChh----hHHHH-HhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhh
Q psy12605 565 YMCVSPGTDE----QTQVI-LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSC 639 (845)
Q Consensus 565 l~nl~~~~~~----~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 639 (845)
+.|+..+... ....+ ....+++.|+.++..+++.|.+.++.+|.|++.+. ..+.++..++++.|++.|..+..
T Consensus 543 LQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 543 LQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGP 620 (717)
T ss_pred HhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCC
Confidence 8888665332 33333 68889999999999999999999999999998653 24556678899999988832100
Q ss_pred hhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHH
Q psy12605 640 KILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAI 719 (845)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 719 (845)
-.+.+.++-..+|.+|
T Consensus 621 ----------------------------------------------------------------~~~~sedtv~~vc~tl 636 (717)
T KOG1048|consen 621 ----------------------------------------------------------------STSLSEDTVRAVCHTL 636 (717)
T ss_pred ----------------------------------------------------------------CcCchHHHHHHHHHhH
Confidence 0345567888999999
Q ss_pred HhhcccCCHHHHHHHHHcCCchHHhhhhcc-ccHHHHHHHHHHHHHHHHhhHHH
Q psy12605 720 SNLTISGNRDQVAKLVQEGVIPPFCDLLSC-KDAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 720 ~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~-~d~~~~~~al~~L~~l~~~~~~~ 772 (845)
.|+. ..++++...+.+.++++.|+.+..+ .++++.++|-..|..|+.+.+-+
T Consensus 637 ~niv-~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh 689 (717)
T KOG1048|consen 637 NNIV-RKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH 689 (717)
T ss_pred HHHH-HHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 6789999999999999999999987 57899999999999999887654
No 13
>KOG4500|consensus
Probab=99.74 E-value=5.7e-15 Score=149.68 Aligned_cols=425 Identities=16% Similarity=0.149 Sum_probs=286.0
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHH----HHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhh
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQE----VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~----i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~ 177 (845)
+..++..++.++...+.. +-.+.. -+++++++.|.+..+|++.++-+++.++|||+|.++.++|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 346777888888888853 333333 356788999999999999999999999999999999999999999999888
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHH
Q psy12605 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKI 257 (845)
Q Consensus 178 Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (845)
+++.|+.-.. . +++. +.+.
T Consensus 134 vid~L~~~cs----------------~-----------------------d~~a----------------------ne~~ 152 (604)
T KOG4500|consen 134 VIDVLKPYCS----------------K-----------------------DNPA----------------------NEEY 152 (604)
T ss_pred hHhhhccccc----------------c-----------------------CCcc----------------------HHHH
Confidence 8888764311 0 0111 0014
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc--CCchhhHHHHHHHHHHHhcC-ChhhHHHHhcCCccchhhHhh
Q psy12605 258 LVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS--HKEVKVQTASLRAVGNIVTG-TDEQTQVILNCDALSHFPALL 334 (845)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~-~~~~~~~i~~~~~l~~L~~lL 334 (845)
..-++..|.+....+.+....+++.|+++.|...+. -.+...-+..+-..+|+.+- .+.......++...-.+++++
T Consensus 153 ~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll 232 (604)
T KOG4500|consen 153 SAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLL 232 (604)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 445666777777777777788889999999888773 34444444444444444321 122233445566666778888
Q ss_pred cC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCCh---hHHHHHHHHHHHHhcCChHhHHHH
Q psy12605 335 TH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP---NLQFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 335 ~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~---~v~~~a~~~L~~l~~~~~~~~~~l 410 (845)
.+ .++++++-+...+...+. ++...-.+.+.|.+..++.++++.....+.. ..-..++....-+..|+. ..+++
T Consensus 233 ~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L 310 (604)
T KOG4500|consen 233 PSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKL 310 (604)
T ss_pred HHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHH
Confidence 54 456777777777777644 3444456678899999999998742211111 122233444444445554 44455
Q ss_pred HHcC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC----CCChhHHHHHHHHHHHhh
Q psy12605 411 VAAG-AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP----DIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 411 ~~~g-~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~----~~~~~~~~~~~~~l~nL~ 485 (845)
...+ ..+.++.++.+.+.+....+..+|+|+++....+ ..+.+.|.+..|++++.. +.+.+.+..++.+++|+.
T Consensus 311 ~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 311 HADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred hcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 5554 8899999999999999999999999999987654 466788999999999853 334677778888999987
Q ss_pred cCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccccc
Q psy12605 486 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIY 565 (845)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l 565 (845)
--.. .+..+...|+.+.++..++...+++..+ .+..+
T Consensus 390 IPv~-----------------------------------------nka~~~~aGvteaIL~~lk~~~ppv~fk--llgTl 426 (604)
T KOG4500|consen 390 IPVS-----------------------------------------NKAHFAPAGVTEAILLQLKLASPPVTFK--LLGTL 426 (604)
T ss_pred ccCC-----------------------------------------chhhccccchHHHHHHHHHhcCCcchHH--HHHHH
Confidence 5332 1122333455556666666555555433 24444
Q ss_pred ccccCCChhhHHHH-HhCCcccchHHhhcCCCh-hHHHHHHHHHhhhccCC--HHHHHHHHHCCChHHHHHHh
Q psy12605 566 MCVSPGTDEQTQVI-LNCDALSHFPALLTHPKE-KICKEAVWFLSNITAGN--QAQVQAVIDAGLLPKIIANL 634 (845)
Q Consensus 566 ~nl~~~~~~~~~~l-~~~~~l~~L~~ll~~~~~-~v~~~a~~~Lsnl~~~~--~~~~~~~~~~~~l~~L~~ll 634 (845)
+.+..+.+.....+ -+...+..|+.|-++++- .+-.+.-+.++.+..++ ...+..+..+|++...+..+
T Consensus 427 rM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~ 499 (604)
T KOG4500|consen 427 RMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMF 499 (604)
T ss_pred HHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHH
Confidence 55555555433333 344578899999998874 58888889998888663 34556677899888887766
No 14
>KOG0168|consensus
Probab=99.73 E-value=5.1e-16 Score=169.09 Aligned_cols=262 Identities=21% Similarity=0.305 Sum_probs=218.9
Q ss_pred cHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~~-~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+.+++ ..+... |+..|.+|+..|+.++..........+--.-++|.|+.+|+...+.++...|+++|++++.--|+.
T Consensus 168 k~kkLL-~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLL-QGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHH-HhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 466777 777766 999999999999999997754444444455679999999988889999999999999999988999
Q ss_pred HHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 124 TQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
...+++.++||.|+.-|.. .--++.|+++.+|-.|+...+ ..+.++|++-..+.++.-- ....+|.|+.+.+|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999987765 456899999999999997644 5788999999988888654 5689999999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc---CChhhHHHH
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMV 279 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~ 279 (845)
+.- ....+..+..++|.|..++...|.+ .++.+|-++.++++ +..+..+.+
T Consensus 323 ksi-~sd~f~~v~ealPlL~~lLs~~D~k-------------------------~ies~~ic~~ri~d~f~h~~~kLdql 376 (1051)
T KOG0168|consen 323 KSI-RSDEFHFVMEALPLLTPLLSYQDKK-------------------------PIESVCICLTRIADGFQHGPDKLDQL 376 (1051)
T ss_pred hcC-CCccchHHHHHHHHHHHHHhhccch-------------------------hHHHHHHHHHHHHHhcccChHHHHHH
Confidence 987 4566677889999999999999998 88999999999876 466778888
Q ss_pred HhcCchhhHHhhccCC----chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC
Q psy12605 280 IDSGVVPSLIPLLSHK----EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP 337 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~ 337 (845)
...|++....++|.-. +..+....++.+..++.+++..+..+...++...+..+|...
T Consensus 377 ~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 377 CSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 8999999999999543 234667788999999988887777777888888888887543
No 15
>KOG2171|consensus
Probab=99.70 E-value=3.6e-13 Score=153.60 Aligned_cols=505 Identities=16% Similarity=0.180 Sum_probs=334.9
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..+..++ ..+.++|.+.+..|..++....... + +++.|..++..+.+|++|..|+..+++++..
T Consensus 4 ~~l~qLl-~~l~spDn~vr~~Ae~~l~~~~~~~-~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---- 67 (1075)
T KOG2171|consen 4 APLEQLL-QQLLSPDNEVRRQAEEALETLAKTE-P----------LLPALAHILATSADPQVRQLAAVLLRKLLTK---- 67 (1075)
T ss_pred hHHHHHH-HHhcCCCchHHHHHHHHHHHhhccc-c----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH----
Confidence 3467888 7888888888999999998764432 1 6899999998889999999999999988742
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
. ..+ -+.+.+..+. ..|+..+.+.+...+|...+.+++.+++
T Consensus 68 ---------------~---------------w~~---l~~e~~~sik-----s~lL~~~~~E~~~~vr~k~~dviAeia~ 109 (1075)
T KOG2171|consen 68 ---------------H---------------WSR---LSAEVQQSIK-----SSLLEIIQSETEPSVRHKLADVIAEIAR 109 (1075)
T ss_pred ---------------H---------------hhc---CCHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 0 001 1134444443 2345555555566899999999999998
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
+.-+. ...+.++.|.+..+++++. .++.|+..|..+...-.+..+.. -..
T Consensus 110 ~~l~e----~WPell~~L~q~~~S~~~~-------------------------~rE~al~il~s~~~~~~~~~~~~-~~~ 159 (1075)
T KOG2171|consen 110 NDLPE----KWPELLQFLFQSTKSPNPS-------------------------LRESALLILSSLPETFGNTLQPH-LDD 159 (1075)
T ss_pred hcccc----chHHHHHHHHHHhcCCCcc-------------------------hhHHHHHHHHhhhhhhccccchh-HHH
Confidence 77433 4568899999999999999 88889888888765433322211 113
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCCh---hhHHHHhcCCccchhhHhh----cCCchhhHHHHHHHHHHhhcCC
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD---EQTQVILNCDALSHFPALL----THPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~---~~~~~i~~~~~l~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
+.+.+.+.+.+++..|+..|+++++.++...+ .....+. ..+|.++..+ ..++.+....++.+|..++...
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 34555666677777799999999999986543 2233333 3556566555 4566777788899999988777
Q ss_pred hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHc--CChHHHHHhhCCCCHHHHHHH
Q psy12605 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAA--GAVPLFLRLLMSPHSNVCEQA 434 (845)
Q Consensus 357 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~v~~~a 434 (845)
+......+. .++....+...+.. .+..+|..|...+..++...+..++..... ..++.++.++.....+ .
T Consensus 238 pk~l~~~l~-~ii~~~l~Ia~n~~---l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D----~ 309 (1075)
T KOG2171|consen 238 PKLLRPHLS-QIIQFSLEIAKNKE---LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD----D 309 (1075)
T ss_pred hHHHHHHHH-HHHHHHHHHhhccc---ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc----h
Confidence 766554432 24555555555543 578999999999999988766555544432 2344444444433222 0
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChh
Q psy12605 435 VWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 514 (845)
Q Consensus 435 ~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~ 514 (845)
-| .. + .-+..+....-.+.+..++-.++.+-++.. .....++.+..++.+.+-.
T Consensus 310 ew-----~~-----------~-------d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~ 363 (1075)
T KOG2171|consen 310 EW-----SN-----------E-------DDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQSTEWK 363 (1075)
T ss_pred hh-----cc-----------c-------cccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhcCCCHH
Confidence 00 00 0 000111111123344445555555443222 2244556666666666554
Q ss_pred HHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcC
Q psy12605 515 VSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH 594 (845)
Q Consensus 515 v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 594 (845)
-+.+ ++.+++.++.|..+.... .-..+++++...+.+
T Consensus 364 ~R~A------------------------------------------aL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 364 ERHA------------------------------------------ALLALSVIAEGCSDVMIG-NLPKILPIVLNGLND 400 (1075)
T ss_pred HHHH------------------------------------------HHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCC
Confidence 4433 333444444444443333 122467788889999
Q ss_pred CChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhh
Q psy12605 595 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYS 674 (845)
Q Consensus 595 ~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (845)
++|.||-.||.+|+-++.+-+..++..-...+.|.|+..+.
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld--------------------------------------- 441 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD--------------------------------------- 441 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc---------------------------------------
Confidence 99999999999999999887777777777778888887763
Q ss_pred ccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHh-hhhccccHH
Q psy12605 675 SFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFC-DLLSCKDAQ 753 (845)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~-~~L~~~d~~ 753 (845)
...++.++..|+.++-|+..++....+...++ +.+.+++ .++.++.+.
T Consensus 442 ------------------------------~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 442 ------------------------------STQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPY 490 (1075)
T ss_pred ------------------------------ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchh
Confidence 56778999999999999997777776666665 5666344 455567889
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy12605 754 VIQVVLDGINNMLKMADAQVETLANMIE 781 (845)
Q Consensus 754 ~~~~al~~L~~l~~~~~~~~~~~~~~~~ 781 (845)
+++.++.+|.......+..|.+|++.+.
T Consensus 491 v~e~vvtaIasvA~AA~~~F~pY~d~~M 518 (1075)
T KOG2171|consen 491 VQEQAVTAIASVADAAQEKFIPYFDRLM 518 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 9999999999999988888888877654
No 16
>KOG4199|consensus
Probab=99.69 E-value=5.5e-14 Score=138.37 Aligned_cols=325 Identities=16% Similarity=0.177 Sum_probs=261.5
Q ss_pred hcCCHHHHHHhhc--cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC--CChhHHHHHHHHHHHhcCC
Q psy12605 86 HSGILPVLVECLE--RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 86 ~~g~i~~Lv~lL~--~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~nla~~ 161 (845)
..|..|.++.++. .+.+..+...++.+|..+..+.++ +++..+...++++|.. +++++....+.++..-|-.
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3466666665553 345667778888888888765544 6777899999999864 5778888888899988888
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh---------hHHhhHHHHHHhhccc-CCch
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM---------STIIELLPALNILIHH-HDTS 231 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---------~~~~~~l~~L~~ll~~-~~~~ 231 (845)
.+.+|+.+++.++.+.+...+.+.....+.+.+.|++.-|.-+++-...+ ....+++..|+..+.- -||+
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 88999999999999999988876666679999999999999887655543 3344566677776653 4566
Q ss_pred hhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-chh---hHHHHHHHH
Q psy12605 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-EVK---VQTASLRAV 307 (845)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~---v~~~al~~L 307 (845)
+...++.+|..++-. ++..+.+.+.|++..++.++.+. +.. ....++..|
T Consensus 258 -------------------------~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslL 311 (461)
T KOG4199|consen 258 -------------------------SLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLL 311 (461)
T ss_pred -------------------------HHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence 788889999988864 45667888999999999999763 333 445667777
Q ss_pred HHHhcCChhhHHHHhcCCccchhhHhh--cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCC
Q psy12605 308 GNIVTGTDEQTQVILNCDALSHFPALL--THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR 385 (845)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~lL--~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~ 385 (845)
+.++ +++..+..+++.|+.+.++.++ .+.+|.+..+++.+++-++-..++.-..+++.|+-...++.|+.++ ..
T Consensus 312 ralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP---~~ 387 (461)
T KOG4199|consen 312 RALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP---VA 387 (461)
T ss_pred HHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc---HH
Confidence 7774 6688899999999999999998 4578999999999999999999999999999999999999999875 46
Q ss_pred hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
..+|++|||.+.|++..+.+++..+... +++.|+..-...++.....+-.+|..+..+.
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 7899999999999999888888777765 5778888888888888888888888877653
No 17
>KOG1241|consensus
Probab=99.67 E-value=1.7e-13 Score=148.50 Aligned_cols=415 Identities=15% Similarity=0.161 Sum_probs=273.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHH-HhcCChhhHH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTN-IASGTSAQTQ 125 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~-la~~~~~~~~ 125 (845)
+++ ...-++|+..+..|-..|.++.+.+ ... .+-.|.+.|... .++..|..|--.|.| |.+.+++.+.
T Consensus 5 ~~l-e~tlSpD~n~~~~Ae~~l~~~~~~n----f~~-----F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 5 ELL-EKTLSPDQNVRKRAEKQLEQAQSQN----FPQ-----FLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHH-HHHcCCCcchHHHHHHHHHHHHhcc----HHH-----HHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 444 4566888888888888888875543 111 244555555333 234556555556665 4445444443
Q ss_pred HHHH----------cCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHH
Q psy12605 126 EVVA----------AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194 (845)
Q Consensus 126 ~i~~----------~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 194 (845)
...+ ..+=..+++-|.++.+.....|..+++.|+.- -|.++- .+.+..++.......+..+++.+
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~s 150 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESS 150 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHH
Confidence 3322 01112345566777777777777777777632 111111 13455666666555555789999
Q ss_pred HHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc--hhhHHHHHHHhhhChhhHHhhhh------------------h
Q psy12605 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT--SVSIYLWLSIIEKNPQISKILVS------------------K 254 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~~~~~~~~~l~~~~~~~~~~~~~------------------~ 254 (845)
+.+|..+|.+-++.........++..+++..+.+.+ .+++.+..+|+..=.-....|.. +
T Consensus 151 lealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d 230 (859)
T KOG1241|consen 151 LEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD 230 (859)
T ss_pred HHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc
Confidence 999999999887664444555778888888776544 45665555554321111112211 2
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhH---HHHhcC-------
Q psy12605 255 MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT---QVILNC------- 324 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~---~~i~~~------- 324 (845)
.+++..|+.||..+..-..+..+..+....+...+..+++++++|...+++.++++|...-+.. ....+.
T Consensus 231 ~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~ 310 (859)
T KOG1241|consen 231 EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSK 310 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhh
Confidence 6789999999999988777777777788888888899999999999999999999985432210 111111
Q ss_pred --------CccchhhHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHH
Q psy12605 325 --------DALSHFPALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQ 389 (845)
Q Consensus 325 --------~~l~~L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~ 389 (845)
+++|.|+++|... +-...+.|..||.-+ .......++|.++.+++.+-.+ ++++-+
T Consensus 311 ~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~--------A~~~~D~Iv~~Vl~Fiee~i~~-pdwr~r 381 (859)
T KOG1241|consen 311 YFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLF--------AQCVGDDIVPHVLPFIEENIQN-PDWRNR 381 (859)
T ss_pred HHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHH--------HHHhcccchhhhHHHHHHhcCC-cchhhh
Confidence 4667888888442 123445555555544 2334456777777777754322 478888
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCChHHHHhccCCC
Q psy12605 390 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR-DYVINMGVVPPLLSFIKPD 468 (845)
Q Consensus 390 ~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~~ 468 (845)
..|+.+++.+..+....+..-+..++++.++.++.++.-.++..+.|+|+.++...++.+ ....-.+.++.++.-+.+.
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC
Confidence 999999999999888888888889999999999999999999999999999998766432 2223344555566555543
Q ss_pred CChhHHHHHHHHHHHhhcC
Q psy12605 469 IPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 469 ~~~~~~~~~~~~l~nL~~~ 487 (845)
..+..++||++.+|+.+
T Consensus 462 --Prva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 462 --PRVASNVCWAFISLAEA 478 (859)
T ss_pred --chHHHHHHHHHHHHHHH
Confidence 36788999999999853
No 18
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.65 E-value=1.8e-12 Score=135.96 Aligned_cols=628 Identities=14% Similarity=0.125 Sum_probs=355.2
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc-CCChhHHHHHHHHHHH-HhcCChhhHHHHHH--c
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER-SDRPNLQFEAAWALTN-IASGTSAQTQEVVA--A 130 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~i~~~a~~~L~~-la~~~~~~~~~i~~--~ 130 (845)
-++|+..+..|-..|.++.+.+ ... .+..|++.|-. ..++.+|..|.-+|.| +...+++..+...+ .
T Consensus 15 LspD~n~rl~aE~ql~~l~~~d----F~q-----f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~ 85 (858)
T COG5215 15 LSPDPNARLRAEAQLLELQSGD----FEQ-----FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWL 85 (858)
T ss_pred CCCCCCccccHHHHHHHhcccc----HHH-----HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhc
Confidence 3556666666666666653322 111 13444544421 1345566666555555 33333333322221 1
Q ss_pred C--------ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 131 G--------AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 131 g--------~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
| +=...++-|.++.+.+...|...++.|+.-. ...-. =.|.+..+++......+.+.+..++.++.++|
T Consensus 86 ~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E--lp~~~-wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 86 GMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME--LPNSL-WPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred cCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh--Ccccc-chHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 1 1112355678888888888888888887321 10000 01334455566666678899999999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhccc--CCchhhHHHHHHHhhhChhhHHhhhh------------------hHHHHHHHH
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHH--HDTSVSIYLWLSIIEKNPQISKILVS------------------KMKILVDTV 262 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~a~ 262 (845)
....|..-......++-.++..-.. ++..+++.++.+|+..--.++..|.- +.+++..+.
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aaf 242 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAF 242 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHH
Confidence 9886632223333455555554433 45567888887887655555544443 267888999
Q ss_pred HHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHh--------c--------CCc
Q psy12605 263 WALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVIL--------N--------CDA 326 (845)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~--------~--------~~~ 326 (845)
.||..+..-.....+.+.+.-+...+...+++++.++...|++.+..+|...-+..-... + ..+
T Consensus 243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dv 322 (858)
T COG5215 243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADV 322 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHH
Confidence 999988776666667777878888888999999999999999999999864322111111 1 137
Q ss_pred cchhhHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 327 LSHFPALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 327 l~~L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
+|.|+++|... +-.+...|..||.-. .++....++.+++.+....-.+ +++.-+..|..+++.+
T Consensus 323 lP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf--------aq~~gd~i~~pVl~FvEqni~~-~~w~nreaavmAfGSv 393 (858)
T COG5215 323 LPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF--------AQLKGDKIMRPVLGFVEQNIRS-ESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHHHhcCCCccccccchhhhHHHHHHHH--------HHHhhhHhHHHHHHHHHHhccC-chhhhHHHHHHHhhhh
Confidence 88899999542 224455555555443 2222333555666666544322 4778889999999999
Q ss_pred hcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc--CCCCChhHHHHH
Q psy12605 400 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI--KPDIPISFLRNV 477 (845)
Q Consensus 400 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll--~~~~~~~~~~~~ 477 (845)
..+..+.+..-+-..++|.+..++.++.--++..++||++.|+.+- ...+-.+|.+...++.. .-.+......++
T Consensus 394 m~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 394 MHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred hcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhh
Confidence 9887777777777889999999999989999999999999998643 34455566555554332 223344677899
Q ss_pred HHHHHHhhcCCCCCC----C--hhHHHhHHHHHHHhhc--CCChhHHHHHH--HHhhh-cCchhhHH--------HHhhh
Q psy12605 478 TWVIVNLCRNKDPPP----S--MSTIIELLPALNILIH--HHDTSVSIYLW--LSIIE-KNPQISKI--------LVSKM 538 (845)
Q Consensus 478 ~~~l~nL~~~~~~~~----~--~~~~~~~l~~l~~ll~--~~d~~v~~~~~--l~~l~-~~~~~~~~--------~~~~~ 538 (845)
+|.+-|+..+..+.. + ......++..|...-. .++...+...+ +.-|- -.++..-. ...+-
T Consensus 471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl 550 (858)
T COG5215 471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKL 550 (858)
T ss_pred HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 999999988764322 1 1222233333332221 23333333322 11111 01111000 01111
Q ss_pred hhhHHHHh-hhccCCCC-c-ccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCCh-hHHHHHHHHHhhhccCC
Q psy12605 539 KVCSRYLY-YLSHNSGP-M-SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE-KICKEAVWFLSNITAGN 614 (845)
Q Consensus 539 ~~~~~L~~-ll~~~~~~-~-~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~~Lsnl~~~~ 614 (845)
+-+-.+.. .+...+.. . ..+...+.++..++-....-.+ -.+.-++..+.+++++.++ .+...+..+|++++.+-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie-~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE-DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 11100000 00000000 0 0000000011111000000000 0000123455666666543 45566777777777654
Q ss_pred HHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhh
Q psy12605 615 QAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFA 694 (845)
Q Consensus 615 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (845)
.+..+.... .++|.+.+-|
T Consensus 630 ~e~Fe~y~~-~fiPyl~~al------------------------------------------------------------ 648 (858)
T COG5215 630 EERFEQYAS-KFIPYLTRAL------------------------------------------------------------ 648 (858)
T ss_pred HHHHHHHHh-hhhHHHHHHh------------------------------------------------------------
Confidence 444433332 3455554433
Q ss_pred hhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc--cHHHHHHHHHHHHHHHHhhHHH
Q psy12605 695 FISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK--DAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~--d~~~~~~al~~L~~l~~~~~~~ 772 (845)
...|..+-..|...++.++. .-..... .........|+++|.++ +.+++-+.+.+...|.-.-+..
T Consensus 649 ----------n~~d~~v~~~avglvgdlan-tl~~df~-~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~ 716 (858)
T COG5215 649 ----------NCTDRFVLNSAVGLVGDLAN-TLGTDFN-IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGAN 716 (858)
T ss_pred ----------cchhHHHHHHHHHHHHHHHH-HhhhhHH-HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhh
Confidence 55667788888888888872 1122222 22336777899999884 6689999999999998776666
Q ss_pred HHHHHHHH
Q psy12605 773 VETLANMI 780 (845)
Q Consensus 773 ~~~~~~~~ 780 (845)
|+.|.+.+
T Consensus 717 F~~YL~~i 724 (858)
T COG5215 717 FESYLDMI 724 (858)
T ss_pred HHHHHHHH
Confidence 77665543
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.65 E-value=6e-13 Score=149.70 Aligned_cols=390 Identities=17% Similarity=0.170 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
....+|.+|..+.....- ..+ ..+..+.+...|.++++.|+..+++.|+++..+++...+.+.+.++++.++.++.+
T Consensus 54 ~v~~~~~iL~~~l~~~~~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 54 QVELICDILKRLLSALSP--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred HHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 556777777776553221 111 45677889999999999999999999999998888878888899999999999999
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCCh
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i 416 (845)
++..+...|..+|.+++.+.. ..+.++..++++.|..++... ++.+|..+..++.++++.+++....+.+.|.+
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~-----~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll 204 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQS-----SDIVRCRVYELLVEIASHSPEAAEAVVNSGLL 204 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhcc-----CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHH
Confidence 999999999999999987654 446788888899999999773 67889999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChh-H----HHHHHHHHHHhhcCCCCC
Q psy12605 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPIS-F----LRNVTWVIVNLCRNKDPP 491 (845)
Q Consensus 417 ~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~-~----~~~~~~~l~nL~~~~~~~ 491 (845)
+.++..+.++|.-++..++..|..++. .+...+.+.+.|+++.|..++.+....+ . .-.....+++++...
T Consensus 205 ~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~--- 280 (503)
T PF10508_consen 205 DLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS--- 280 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC---
Confidence 999999999999999999999999999 6777889999999999999997544322 1 111112233333211
Q ss_pred CChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCC
Q psy12605 492 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPG 571 (845)
Q Consensus 492 ~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~ 571 (845)
...+.. ..
T Consensus 281 --------------------~~~v~~----------------------~~------------------------------ 288 (503)
T PF10508_consen 281 --------------------PQEVLE----------------------LY------------------------------ 288 (503)
T ss_pred --------------------hHHHHH----------------------HH------------------------------
Confidence 000000 00
Q ss_pred ChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHH-HHC-CChHHHHHHhhhhhhhhhhhcccCC
Q psy12605 572 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV-IDA-GLLPKIIANLQKRSCKILNKYLDNN 649 (845)
Q Consensus 572 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~-~~~-~~l~~L~~ll~~~~~~~~~~~~~~~ 649 (845)
..++..+..++++.++..+..|+-+++.++...+ -.+.+ ... +.++..++....
T Consensus 289 ----------p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~-G~~~L~~~~~~~~~~~l~~~~~------------- 344 (503)
T PF10508_consen 289 ----------PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE-GKQLLLQKQGPAMKHVLKAIGD------------- 344 (503)
T ss_pred ----------HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH-HHHHHHhhcchHHHHHHHHHHH-------------
Confidence 0122344456677788888889999999985543 33333 332 234444433210
Q ss_pred chhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCH-
Q psy12605 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNR- 728 (845)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~- 728 (845)
...++..++|..+..+++++.....+
T Consensus 345 -----------------------------------------------------~~~~~~~~lk~r~l~al~~il~~~~~~ 371 (503)
T PF10508_consen 345 -----------------------------------------------------AIKSGSTELKLRALHALASILTSGTDR 371 (503)
T ss_pred -----------------------------------------------------HhcCCchHHHHHHHHHHHHHHhcCCCC
Confidence 01456667888888888888533332
Q ss_pred --HHHHH-------HHHcCCch-HHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH
Q psy12605 729 --DQVAK-------LVQEGVIP-PFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV 798 (845)
Q Consensus 729 --~~~~~-------l~~~~~i~-~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~ 798 (845)
+++.. .+..+... .++.+++.+=++++.+++..|..|+.+.-.. ..+....|+++.|.+-....+.
T Consensus 372 ~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~----~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 372 QDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ----REICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH----HHHHhCccHHhhhcCCCCCCCH
Confidence 22222 22334555 7778888878999999999999999775432 3466678888888766655666
Q ss_pred HHHHHHHHHHHHhc
Q psy12605 799 EIYKLAYDIIERYF 812 (845)
Q Consensus 799 ~v~~~a~~~l~~~~ 812 (845)
+.+++=.+++.++.
T Consensus 448 ~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 448 EGKEAKYDIIKALA 461 (503)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555445555444
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.65 E-value=3.9e-13 Score=151.17 Aligned_cols=398 Identities=17% Similarity=0.180 Sum_probs=291.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 50 v~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
++..+++.+.+....+...|.+++.... ...+ ..++.+.|...| .++++.+|..+++.|.+++.++......+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~---~~~l-~~~~~~~L~~gL-~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS---PDSL-LPQYQPFLQRGL-THPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC---HHHH-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 4488998888888888999999887442 1222 567889999999 5788999999999999999877666777888
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.+.++.++.++.+++..+...|+.+|.+++...+ ..+.+++.+.+..|..++.+++ ..+|..+..++.++++..+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999997654 5566878888999999998753 3678889999999998775555
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
......|+++.++..+.++|.- ++.+++..+..++. .+...+.+.+.|+++.|.
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiL-------------------------vqlnalell~~La~-~~~g~~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDIL-------------------------VQLNALELLSELAE-TPHGLQYLEQQGIFDKLS 249 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHH-------------------------HHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHH
Confidence 5556678999999999987777 88899999999998 556678888999999999
Q ss_pred hhccCCc--h---hhH-HHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 290 PLLSHKE--V---KVQ-TASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 290 ~lL~~~~--~---~v~-~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
.++.+.. + .+. ...++..++++...+....... ..++..+..++.+.|+..+..|..+++.++. +.+....+
T Consensus 250 ~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L 327 (503)
T PF10508_consen 250 NLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLL 327 (503)
T ss_pred HHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHH
Confidence 9994432 2 223 3445888888874322111111 1344556667788899999999999999964 44554555
Q ss_pred -Hh-cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH--------hHHHH---HHcCChH-HHHHhhCCCCHH
Q psy12605 364 -ID-AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--------QTQEV---VAAGAVP-LFLRLLMSPHSN 429 (845)
Q Consensus 364 -~~-~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--------~~~~l---~~~g~i~-~Lv~lL~~~~~~ 429 (845)
.. .+.++..+..+...... ...++|..+..++.++....++ ..... ...+... .+..+++.+=++
T Consensus 328 ~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e 406 (503)
T PF10508_consen 328 LQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE 406 (503)
T ss_pred HhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH
Confidence 33 33455555444332110 2568999999999999543221 12222 2234445 788899999999
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCC--hhHHHHHHHHHHH
Q psy12605 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP--ISFLRNVTWVIVN 483 (845)
Q Consensus 430 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~--~~~~~~~~~~l~n 483 (845)
+|..+...|..++......+......|.++.+++--...+. .+.+..++.++.+
T Consensus 407 lr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 407 LRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999987778777777777777654433222 2334444444443
No 21
>KOG4500|consensus
Probab=99.65 E-value=1.7e-13 Score=139.09 Aligned_cols=329 Identities=16% Similarity=0.128 Sum_probs=236.0
Q ss_pred HhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC-------ChhHHHHHHHHHHH
Q psy12605 85 IHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP-------HSNVCEQAVWALGN 157 (845)
Q Consensus 85 ~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~-------~~~v~~~a~~~L~n 157 (845)
+.++.+..|.+.. ++++.++..++.++|+|+|+.+.|++.++.+.||-..++++|+.. +++.-.-+...|.|
T Consensus 84 I~a~~le~Lrq~p-sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 84 IDAEALELLRQTP-SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred hHHHHHHHHHhCC-CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 5678888889888 567789999999999999999999999999999988888888642 34566678889999
Q ss_pred hcCCChhhHHHHHhcCChhhHHhhhcCC-CCHHHHHHHHH----HHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCch
Q psy12605 158 IIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTW----VIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTS 231 (845)
Q Consensus 158 la~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~----~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~ 231 (845)
..-++.+.+..+.+.|+++.|...+.-+ .+....+.... .++-.|+.. .++.......-.+++++.. ..++
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~---~~~~~d~sl~~~l~~ll~~~v~~d 239 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML---YPFCKDCSLVFMLLQLLPSMVRED 239 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh---hhhhccchHHHHHHHHHHHhhccc
Confidence 9999999999999999999888776422 22222222222 222222211 1111222333344444432 2333
Q ss_pred hhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-Cch-------hhHHHH
Q psy12605 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEV-------KVQTAS 303 (845)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~-------~v~~~a 303 (845)
+.+.++..+++.++.+.-. -.+++.|.+..++.+++. +.. .....+
T Consensus 240 -------------------------~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~ 293 (604)
T KOG4500|consen 240 -------------------------IDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRI 293 (604)
T ss_pred -------------------------hhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHhh
Confidence 5667778888888765433 345688999999998854 221 122334
Q ss_pred HHHHHHHhcCChhhHHHHhcCC-ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc
Q psy12605 304 LRAVGNIVTGTDEQTQVILNCD-ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI 382 (845)
Q Consensus 304 l~~L~nl~~~~~~~~~~i~~~~-~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 382 (845)
+....-+..+++. .+.+...+ +++.+...+.+.|.+....+.-+++|+++.+. ....+++.+++..|++++......
T Consensus 294 ~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~v 371 (604)
T KOG4500|consen 294 AELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDV 371 (604)
T ss_pred hhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444445556444 44455544 88899999999999999999999999977654 457788999999999999875444
Q ss_pred cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 383 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+.+.+++..++.+|.|++--- .++..+...|..+.++..+....|.+...-+.++.-+....+
T Consensus 372 dgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 372 DGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred CccchhHHHHHHHHHhccccC-CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 457788999999999987532 345678889999999999999999999888888876655444
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.64 E-value=5.5e-14 Score=162.48 Aligned_cols=358 Identities=16% Similarity=0.208 Sum_probs=255.8
Q ss_pred HHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 52 EAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 52 ~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
+.+++. +...+..++..+..+...+.+. .-+.+..++++. +++...++-+--++..+...+++....
T Consensus 11 ~~~~~~~~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~l--- 79 (526)
T PF01602_consen 11 KILNSFKIDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLIL--- 79 (526)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHHH---
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHHH---
Confidence 566666 7778888888888776666442 257888899995 788999999999999998876663322
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
++..+.+-|.++++.++..|+++|++++ +++..+.+ ++.+.+++.++.+ .+|+.|+.++..+.+..+.
T Consensus 80 --~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~~p~-- 147 (526)
T PF01602_consen 80 --IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IPDVIKLLSDPSP-YVRKKAALALLKIYRKDPD-- 147 (526)
T ss_dssp --HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HHHHHHHHHSSSH-HHHHHHHHHHHHHHHHCHC--
T ss_pred --HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HHHHHHHhcCCch-HHHHHHHHHHHHHhccCHH--
Confidence 6788889999999999999999999998 34554443 6778888887754 8999999999999986521
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
..... .++.+.+++.+.++. ++..|+.++..+ ..++.....+ -...+..|.
T Consensus 148 -~~~~~-~~~~l~~lL~d~~~~-------------------------V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~ 198 (526)
T PF01602_consen 148 -LVEDE-LIPKLKQLLSDKDPS-------------------------VVSAALSLLSEI-KCNDDSYKSL-IPKLIRILC 198 (526)
T ss_dssp -CHHGG-HHHHHHHHTTHSSHH-------------------------HHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHH
T ss_pred -HHHHH-HHHHHhhhccCCcch-------------------------hHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhh
Confidence 11122 799999999888888 888899888888 3333211111 224455666
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
.++..+++-.+..+++++..++...+..... ...++.+..++.+.++.+..+++.++..+..... .-..++
T Consensus 199 ~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~ 269 (526)
T PF01602_consen 199 QLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAI 269 (526)
T ss_dssp HHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHH
T ss_pred hcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhH
Confidence 6667889999999999999998766554421 3467888888888889999999999998854432 234467
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
+.|+.++.+ .++.++..++.++..++...+. .+. .....+..+..+++..++..++..|..++... ...
T Consensus 270 ~~L~~lL~s-----~~~nvr~~~L~~L~~l~~~~~~----~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-n~~ 338 (526)
T PF01602_consen 270 NPLIKLLSS-----SDPNVRYIALDSLSQLAQSNPP----AVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES-NVK 338 (526)
T ss_dssp HHHHHHHTS-----SSHHHHHHHHHHHHHHCCHCHH----HHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH-HHH
T ss_pred HHHHHHhhc-----ccchhehhHHHHHHHhhcccch----hhh-hhhhhhheecCCCChhHHHHHHHHHhhccccc-chh
Confidence 889999985 4889999999999999876522 222 22222333444889999999999999998532 122
Q ss_pred HHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 450 ~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
. +++.|...+.+..+.++++.++..++.++..
T Consensus 339 ~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 339 E------ILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp H------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred h------HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 2 4667777775444556777777777776643
No 23
>KOG1293|consensus
Probab=99.64 E-value=8.6e-13 Score=141.63 Aligned_cols=503 Identities=14% Similarity=0.101 Sum_probs=314.0
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 91 PVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 91 ~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
..+..++ ..+|+....|..-..+++.++++.+..+++.|++|.|+.+++.. ..+.+....-+++..+....+....
T Consensus 13 ~~l~~L~--~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~s 90 (678)
T KOG1293|consen 13 DLLYRLL--HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDS 90 (678)
T ss_pred HHHHhhh--cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHH
Confidence 3344554 34567778888888898888888888899999999999999875 4566667777888888777788888
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC--hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS--MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
+.+.+.++.++.++.+..+..++.....++.++....+.... .......++.+..+...+...
T Consensus 91 vL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~--------------- 155 (678)
T KOG1293|consen 91 VLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKY--------------- 155 (678)
T ss_pred HHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhh---------------
Confidence 999999999999998876578999999999999887743332 223334555554444422222
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHH---HHhcCChhhHH----
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVG---NIVTGTDEQTQ---- 319 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~---nl~~~~~~~~~---- 319 (845)
+...-+...++++... +....+.++|+.+.+.-++..-+...+.+|+.+++ ++...++....
T Consensus 156 ----------~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~ 224 (678)
T KOG1293|consen 156 ----------ISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLG 224 (678)
T ss_pred ----------hhhhhhhhhccccccc-hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHH
Confidence 2223333334444333 45566778899999999988888999999999999 77776655433
Q ss_pred HHhcCCccc--hhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh----cCChHH-----HHHHhhhcccccCChhH
Q psy12605 320 VILNCDALS--HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID----AGLLPK-----IIANLQKVGRIVLRPNL 388 (845)
Q Consensus 320 ~i~~~~~l~--~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~----~~~i~~-----Lv~lL~~~~~~~~~~~v 388 (845)
...+.|+.+ .+..++.+++...+..++.++.++...+.+....+.. ..+-.. .+.++.+++ ...
T Consensus 225 ~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~-----~s~ 299 (678)
T KOG1293|consen 225 LLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG-----LST 299 (678)
T ss_pred HHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc-----eee
Confidence 344556666 5667778888888888999998886655222111111 111001 111111211 111
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC-
Q psy12605 389 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP- 467 (845)
Q Consensus 389 ~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~- 467 (845)
-..++...+.++.--+.......+....+...+++. +-..++...+..|..+.+...+..-...-..
T Consensus 300 l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf------------~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i 367 (678)
T KOG1293|consen 300 LDHTNVLFCILARFASKLQLPQHEEATLKTTTELLF------------ICASLAASDEKYRLILLNETLILNHLEYGLEI 367 (678)
T ss_pred hhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHH------------HHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence 122233333333222233333344444444444432 2223333334444444333222111111000
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhh
Q psy12605 468 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYY 547 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 547 (845)
....++.. ......+..+....|.+...++.+.+ ..+++.+..
T Consensus 368 ~~~k~~l~----------------------~~t~~~l~~~~~~kd~~~~aaa~l~~---------------~s~srsV~a 410 (678)
T KOG1293|consen 368 SLKKEILE----------------------TTTESHLMCLPPIKDHDFVAAALLCL---------------KSFSRSVSA 410 (678)
T ss_pred hHHHHHHH----------------------HHHHHHHccccccccHHHHHHHHHHH---------------HHHHHHHHH
Confidence 00001111 11111122222234444443322111 112233333
Q ss_pred hccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCCh
Q psy12605 548 LSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627 (845)
Q Consensus 548 l~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l 627 (845)
|.+. +-...+...|++++..|...|...+.++|.|++..-......|+.+|++
T Consensus 411 L~tg---------------------------~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 411 LRTG---------------------------LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred HHcC---------------------------CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 3332 1123456788899999999999999999999998877788899999999
Q ss_pred HHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCC
Q psy12605 628 PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQG 707 (845)
Q Consensus 628 ~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (845)
..+...+ .+.
T Consensus 464 d~l~s~~----------------------------------------------------------------------~~~ 473 (678)
T KOG1293|consen 464 DILESML----------------------------------------------------------------------TDP 473 (678)
T ss_pred HHHHHHh----------------------------------------------------------------------cCC
Confidence 9999877 678
Q ss_pred CccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHH
Q psy12605 708 EFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 708 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~ 772 (845)
++.+|..+.|+|.|+...++.+....+...=.-..+..+..++|+.|++.++..|.|+.....+.
T Consensus 474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 89999999999999996666666666666556666777888899999999999999998765554
No 24
>KOG2171|consensus
Probab=99.61 E-value=2e-12 Score=147.57 Aligned_cols=463 Identities=17% Similarity=0.197 Sum_probs=298.7
Q ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 46 LDMLVVEAA-RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 46 i~~lv~~~l-~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
++.+. ..+ .+.||+.+..|+.-+|+++..--+ ....=....+-..|+..+.++..+.+|...+.++..+++..-..
T Consensus 38 l~~L~-~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~-~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 38 LPALA-HILATSADPQVRQLAAVLLRKLLTKHWS-RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred HHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 33444 444 467899999999999999874211 11222233455666777767778899999999999998742211
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
-=.++++.|.+..+|+++..|+.|+.+|.++...-.. .+..+.+ ..+.+.+.+..++. .+|..++.++..+..
T Consensus 115 ---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 ---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTMTDPSS-PVRVAAVRALGAFAE 188 (1075)
T ss_pred ---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhccCCcc-hHHHHHHHHHHHHHH
Confidence 0024566666777899999999999999998743211 1111111 23444455555545 499999999999888
Q ss_pred CCC-CCCChhHHhhHHHHHHhhcc----cCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 204 NKD-PPPSMSTIIELLPALNILIH----HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 204 ~~~-~~~~~~~~~~~l~~L~~ll~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
..+ ...........+|.++..+. ..|.+ ....++.+|..++...+...+.
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~-------------------------~a~~~l~~l~El~e~~pk~l~~ 243 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDD-------------------------AAKSALEALIELLESEPKLLRP 243 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchH-------------------------HHHHHHHHHHHHHhhchHHHHH
Confidence 763 33334455567776666554 34444 5677888888887766654443
Q ss_pred HHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCChhhHHHH--hcCCccchhhHhhcCC--c--------------
Q psy12605 279 VIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGTDEQTQVI--LNCDALSHFPALLTHP--K-------------- 338 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~i--~~~~~l~~L~~lL~~~--~-------------- 338 (845)
... .+++.......+ -+..+|..|+.+|..++..-+...+.. .-...++.++.++... |
T Consensus 244 ~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~ 322 (1075)
T KOG2171|consen 244 HLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDE 322 (1075)
T ss_pred HHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccc
Confidence 322 345555555544 367899999999999986633222211 2223455555555321 1
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHH
Q psy12605 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL 418 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~ 418 (845)
+.-...|..+|-.++.+-+. .-+.|.+++.+...-.+ .++.-|..+..+++.++.|+.+...... ...++.
T Consensus 323 ~~~~~~A~~~lDrlA~~L~g-------~~v~p~~~~~l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~ 393 (1075)
T KOG2171|consen 323 ETPYRAAEQALDRLALHLGG-------KQVLPPLFEALEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI 393 (1075)
T ss_pred cCcHHHHHHHHHHHHhcCCh-------hhehHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence 11334555666666554331 12445544444322111 4889999999999999999988776643 357888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHH
Q psy12605 419 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 498 (845)
Q Consensus 419 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~ 498 (845)
.+..|+++++.||..|+.+++.++.+-..--..-...-+.+.|+..+.+..+..+..+++.++-|++.... ...+.
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~----~~~l~ 469 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD----KSILE 469 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc----HHHHH
Confidence 99999999999999999999999987544444445556778899999888888899999988888876542 12222
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHH
Q psy12605 499 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQV 578 (845)
Q Consensus 499 ~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~ 578 (845)
++++.+. +
T Consensus 470 pYLd~lm----------------------------------------~-------------------------------- 477 (1075)
T KOG2171|consen 470 PYLDGLM----------------------------------------E-------------------------------- 477 (1075)
T ss_pred HHHHHHH----------------------------------------H--------------------------------
Confidence 2222111 0
Q ss_pred HHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 579 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 579 l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
+.+..+++++++.+++.++.+|+.++...+....+..+ .++|.|.+.|++
T Consensus 478 -------~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d-~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 478 -------KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD-RLMPLLKNFLQN 527 (1075)
T ss_pred -------HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH-HHHHHHHHHHhC
Confidence 13445567788899999999999998655544444444 367777777753
No 25
>KOG2122|consensus
Probab=99.61 E-value=1.1e-13 Score=157.89 Aligned_cols=361 Identities=18% Similarity=0.189 Sum_probs=274.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC---CChhHHHHHHHHHHHHhcCChhhH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS---DRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.++ .++...|++.. .+.|..+.++. ...-.+..+|.+|.|+++| .. ++.+.+..|-.+|.+|....++.+
T Consensus 201 sll-sml~t~D~ee~---ar~fLemSss~--esCaamR~SgCLpLLvQil-H~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLL-SMLGTDDEEEM---ARTFLEMSSSP--ESCAAMRRSGCLPLLVQIL-HGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHh-hhcccCCHHHH---HHHHHHhccCc--hhhHHHHhccchHHHHHHh-hCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 445 56666666533 44555554433 2245677899999999999 33 245789999999999997666654
Q ss_pred HHHHHcCChHHHHHh----------hCCC-------ChhHHH-HHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC--
Q psy12605 125 QEVVAAGAVPLFLRL----------LMSP-------HSNVCE-QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP-- 184 (845)
Q Consensus 125 ~~i~~~g~i~~L~~l----------L~s~-------~~~v~~-~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~-- 184 (845)
..=.+.-+++.|=+. ++.. ..+-+. +|+.+|.+++. +++.|+.+.+.|++..+-+++.-
T Consensus 274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh 352 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDH 352 (2195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 433332233333221 1221 112233 78889999984 57899999999999998887741
Q ss_pred ---------CCCHHHHHHHHHHHHHhhcCCCC-CCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 185 ---------DIPISFLRNVTWVIVNLCRNKDP-PPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 185 ---------~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
.....+|+.|..+|.||.-+... ...+....|++..+|..+.+...+
T Consensus 353 ~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pee----------------------- 409 (2195)
T KOG2122|consen 353 EMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEE----------------------- 409 (2195)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHH-----------------------
Confidence 12458999999999999998743 334566779999999988877666
Q ss_pred HHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcC-Cccchhh
Q psy12605 255 MKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNC-DALSHFP 331 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~-~~l~~L~ 331 (845)
+.+..+..|.+|+=. +.+..+.+.+.|-+..|+..- ....+....+.+.+|.||+.+..+++..|... |++..|+
T Consensus 410 --L~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLV 487 (2195)
T KOG2122|consen 410 --LLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLV 487 (2195)
T ss_pred --HHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHH
Confidence 667777788888633 344556777778888887765 55677788999999999999888777777655 8899999
Q ss_pred HhhcCC----chhhHHHHHHHHHHhhc---CChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 332 ALLTHP----KEKICKEAVWFLSNITA---GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 332 ~lL~~~----~~~~~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.+|+.. .-.+.+.+-++|.|++. ...++++.+.+.+.+..|++.|+++ +-.+..++|.+|+||...++
T Consensus 488 g~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-----SLTiVSNaCGTLWNLSAR~p 562 (2195)
T KOG2122|consen 488 GTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-----SLTIVSNACGTLWNLSARSP 562 (2195)
T ss_pred hhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-----ceEEeecchhhhhhhhcCCH
Confidence 999653 35677888888888654 4667778888899999999999996 67788999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+..+.+++.|+++.|..++.+.+.++.+-++.+|.|+..+-+
T Consensus 563 ~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 563 EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999986543
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=99.60 E-value=3.8e-11 Score=138.27 Aligned_cols=383 Identities=13% Similarity=0.097 Sum_probs=267.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.++- +.|++.+...+..|+..+..+...+.+ . +.+.+..++++ .+++.++|+.....|.+++..+++..-
T Consensus 34 ~~ELr-~~L~s~~~~~kk~alKkvIa~mt~G~D--v-----S~LF~dVvk~~-~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 34 GAELQ-NDLNGTDSYRKKAAVKRIIANMTMGRD--V-----SYLFVDVVKLA-PSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred HHHHH-HHHHCCCHHHHHHHHHHHHHHHHCCCC--c-----hHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 34555 788898888889999988888776644 1 23577888888 577889999999999999876666543
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
. ++..|.+-++++++.+|-.|+++|++|-. ++.-+.+ ++.+.+.+.+. +..+|+.|+.++..+.+..
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l-----~~~lkk~L~D~-~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYT-----LEPLRRAVADP-DPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHH-----HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC
Confidence 2 67888999999999999999999999863 3333332 45667777766 4589999999999998755
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+ ......+.++.|..++.+.|+. ++.+|+.+|..+...+++... ...+.+
T Consensus 172 p---elv~~~~~~~~L~~LL~D~dp~-------------------------Vv~nAl~aL~eI~~~~~~~l~--l~~~~~ 221 (746)
T PTZ00429 172 M---QLFYQQDFKKDLVELLNDNNPV-------------------------VASNAAAIVCEVNDYGSEKIE--SSNEWV 221 (746)
T ss_pred c---ccccccchHHHHHHHhcCCCcc-------------------------HHHHHHHHHHHHHHhCchhhH--HHHHHH
Confidence 2 2233457888899999999998 899999999988766544332 234556
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCC-hHHHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN-QAQVQAVI 364 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~l~ 364 (845)
..++..|.+-++..+...+++|......++... ..++..+...|.+.++.+.-+|+.++.++.... ++..+...
T Consensus 222 ~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~ 296 (746)
T PTZ00429 222 NRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT 296 (746)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 777777777778888888888866432222211 135677888888999999999999999986542 23222221
Q ss_pred hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
..+.++++.++. .++++|..+...+..++...+.. +.. -+..+.-..+++. .|+...+..|..++..
T Consensus 297 -~rl~~pLv~L~s------s~~eiqyvaLr~I~~i~~~~P~l----f~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane 363 (746)
T PTZ00429 297 -VRVNTALLTLSR------RDAETQYIVCKNIHALLVIFPNL----LRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTP 363 (746)
T ss_pred -HHHHHHHHHhhC------CCccHHHHHHHHHHHHHHHCHHH----HHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCc
Confidence 223356666643 26899999998888887765532 222 1344444444444 5899999999999864
Q ss_pred ChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCC
Q psy12605 445 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 445 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
.. ... ++..|..+.. +.+.++.+.++.+++.++...+ .....++..|..++...
T Consensus 364 ~N-v~~------IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~-----~~a~~cV~~Ll~ll~~~ 417 (746)
T PTZ00429 364 SV-APE------ILKELAEYAS-GVDMVFVVEVVRAIASLAIKVD-----SVAPDCANLLLQIVDRR 417 (746)
T ss_pred cc-HHH------HHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCC
Confidence 42 222 2355555554 3456899999999999986542 23455666666666543
No 27
>KOG2023|consensus
Probab=99.60 E-value=1.4e-13 Score=146.57 Aligned_cols=280 Identities=19% Similarity=0.208 Sum_probs=199.8
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhc----CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM----GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
.++|.|..+|.+++....+-|..+|.+|+.++++.-+.-.-. -.+|.++.+.+++.+ .+|..|+.++..+....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp-kiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP-KIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh-hHHHHHHhhhhheeecC-
Confidence 378999999999999999999999999999887653331111 258889999999855 89999999998877655
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchh
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 286 (845)
+..-+......+..+..+-.+++++ ++...|.++.+|.+...+....- =.++++
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~e-------------------------VRk~vC~alv~Llevr~dkl~ph-l~~Ive 259 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPE-------------------------VRKNVCRALVFLLEVRPDKLVPH-LDNIVE 259 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHH-------------------------HHHHHHHHHHHHHHhcHHhcccc-hHHHHH
Confidence 3444556778888888888888888 99999999999987665532221 125667
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC--CccchhhHhhcCC--chhhHH-------------------
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC--DALSHFPALLTHP--KEKICK------------------- 343 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~~lL~~~--~~~~~~------------------- 343 (845)
.++..-.+.++.|...|++.+..++... -.+..+... ..+|.|++-+... |..+.+
T Consensus 260 yML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRf 338 (885)
T KOG2023|consen 260 YMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRF 338 (885)
T ss_pred HHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchh
Confidence 7777778888999999999999998654 222222211 3455555433111 100000
Q ss_pred ---------------------------HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHH
Q psy12605 344 ---------------------------EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396 (845)
Q Consensus 344 ---------------------------~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L 396 (845)
..-|-|+.+++..-+....+....+++.++.+++..-.. +++.+|+.+..++
T Consensus 339 hksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~-~~W~vrEagvLAl 417 (885)
T KOG2023|consen 339 HKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS-EEWKVREAGVLAL 417 (885)
T ss_pred hhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc-chhhhhhhhHHHH
Confidence 012555555554445555566677888888887754222 5789999999999
Q ss_pred HHHhcCChHhHHHHHHc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 397 TNIASGTSAQTQEVVAA--GAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 397 ~~l~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+.++.|+... ++.+ ..+|.|+.+|.+..+-||.-++|+|+..+.
T Consensus 418 GAIAEGcM~g---~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 418 GAIAEGCMQG---FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHHhhh---cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 9999876432 2222 368889999999999999999999999874
No 28
>KOG1222|consensus
Probab=99.58 E-value=2.1e-12 Score=132.77 Aligned_cols=370 Identities=15% Similarity=0.161 Sum_probs=274.7
Q ss_pred HHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 40 KMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 40 ~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
+|....+-.++...|+..+.+.....+..|.++.-..+ ++..+.+.|+|..|++++ ....|+++...+..|.+++.+
T Consensus 299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e--NK~~M~~~~iveKL~klf-p~~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE--NKIVMEQNGIVEKLLKLF-PIQHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc--chHHHHhccHHHHHHHhc-CCCCHHHHHHHHHHhhhcccc
Confidence 45555555544378888888877777888888765553 467888999999999999 678899999999999999864
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
...+..++..|.+|.|..+|.+... ...|+..|..++.++ +.+..+....+|+.+...+-.+....+-...+...-
T Consensus 376 -~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci 451 (791)
T KOG1222|consen 376 -SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI 451 (791)
T ss_pred -ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH
Confidence 6788899999999999999987643 356888888998764 578888888899999987766555555555566667
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHh-hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNI-LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
|+|-+..+.+-.. ....+..|.. .++..|+- ....+.+++.++.....+
T Consensus 452 Nl~lnkRNaQlvc-eGqgL~~LM~ra~k~~D~l-----------------------------LmK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 452 NLCLNKRNAQLVC-EGQGLDLLMERAIKSRDLL-----------------------------LMKVVRNISQHEGATQNM 501 (791)
T ss_pred HHHhccccceEEe-cCcchHHHHHHHhcccchH-----------------------------HHHHHHHhhhccchHHHH
Confidence 8888775544433 3445555554 34445543 234466777776644444
Q ss_pred HHhcCchhhHHhhcc-CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC--chhhHHHHHHHHHHhhcC
Q psy12605 279 VIDSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP--KEKICKEAVWFLSNITAG 355 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~ 355 (845)
+++ .+..|...++ +.+++....++++++|+...+-+..+.+.+...+|.+-..|..+ ..++.-.....++.++..
T Consensus 502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d 579 (791)
T KOG1222|consen 502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD 579 (791)
T ss_pred HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence 443 4555566554 45667888999999999887777788888889999999999653 345666666666666443
Q ss_pred ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHH-HcCChHHHHHhhCCCCHHHHHHH
Q psy12605 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVV-AAGAVPLFLRLLMSPHSNVCEQA 434 (845)
Q Consensus 356 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~v~~~a 434 (845)
..+...+..+++++.++++|+... .+.+......+.+..+..+. ..+..++ +...-..++.++.+.+.++|+.|
T Consensus 580 -~~cA~Lla~a~~i~tlieLL~a~Q---eDDEfV~QiiyVF~Q~l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVC 654 (791)
T KOG1222|consen 580 -LDCARLLAPAKLIDTLIELLQACQ---EDDEFVVQIIYVFLQFLKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVC 654 (791)
T ss_pred -hHHHHHhCccccHHHHHHHHHhhc---ccchHHHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHH
Confidence 455566677999999999998764 56778888889999888873 3344444 45667789999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHH
Q psy12605 435 VWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 435 ~~~L~nl~~~~~~~~~~l~ 453 (845)
-.+|--++.++.+..+.+.
T Consensus 655 Dn~LdIiae~d~EWAKrI~ 673 (791)
T KOG1222|consen 655 DNALDIIAEHDKEWAKRIA 673 (791)
T ss_pred HHHHHHHHHhhHHHHHHHh
Confidence 9999999998887776654
No 29
>KOG4199|consensus
Probab=99.57 E-value=4.2e-12 Score=125.29 Aligned_cols=321 Identities=14% Similarity=0.209 Sum_probs=248.2
Q ss_pred cCChHHHHHhh---CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHHhhcCC
Q psy12605 130 AGAVPLFLRLL---MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 130 ~g~i~~L~~lL---~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~l~~~~ 205 (845)
.|+.+.++-++ .+++..+..+++.+|..+....|+ ++++.+...++.+|.... +.++--.....+..-|...
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 46666555544 466788888999999998866664 456677888999886443 4456666677777777777
Q ss_pred CCCCChhHHhhHHHHHHhhcccC-CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC---------hhh
Q psy12605 206 DPPPSMSTIIELLPALNILIHHH-DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG---------NDQ 275 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~---------~~~ 275 (845)
+.........++++.+.+.+..+ ..+ +...++|+++.|...+ .+.
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~-------------------------~VRel~~a~r~l~~dDDiRV~fg~ah~h 233 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTR-------------------------TVRELYDAIRALLTDDDIRVVFGQAHGH 233 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccH-------------------------HHHHHHHHHHHhcCCCceeeecchhhHH
Confidence 66666667778999998777653 334 7788899999886533 345
Q ss_pred HHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC-ch---hhHHHHHHHHH
Q psy12605 276 IQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP-KE---KICKEAVWFLS 350 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~-~~---~~~~~a~~~L~ 350 (845)
.+.+...|++..|++.+.- -++.+...++.+|+.++.. ++..+.+.+.|++..++.++.+. +. .+.+.++..|+
T Consensus 234 Ar~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 234 ARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLR 312 (461)
T ss_pred HHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHH
Confidence 6788888999999999943 3578889999999999876 66788899999999999999773 33 35578888898
Q ss_pred HhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCC--H
Q psy12605 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH--S 428 (845)
Q Consensus 351 nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~--~ 428 (845)
.+ +++++....+++.|+.+.++.++..+. ++|.+..+++.+++-++-..+++...+++.|+-...++.+.... .
T Consensus 313 al-AG~DsvKs~IV~~gg~~~ii~l~~~h~---~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a 388 (461)
T KOG4199|consen 313 AL-AGSDSVKSTIVEKGGLDKIITLALRHS---DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAA 388 (461)
T ss_pred HH-hCCCchHHHHHHhcChHHHHHHHHHcC---CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHH
Confidence 88 566778899999999999999998876 68999999999999999999999999999999999999998654 4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC-CCCChhHHHHHHHHHHHhhcC
Q psy12605 429 NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 429 ~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~~~~~~~~~~l~nL~~~ 487 (845)
.++.+++|++.|++..+.+.+..++..|+ +.|+..-. ++. .....+-.+|+.|...
T Consensus 389 ~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~h~--tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 389 QVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKANHE--TCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhcCc--cHHHHHHHHHHhcCcc
Confidence 68999999999999999999998888774 55554443 332 3334444456655443
No 30
>KOG1293|consensus
Probab=99.56 E-value=3.7e-12 Score=136.88 Aligned_cols=403 Identities=15% Similarity=0.114 Sum_probs=242.2
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
..+.+.||+....|....+..+...+ +....++..|.++.|..++... ..++.+.+.+.++..+..+..+....+.+.
T Consensus 16 ~~L~~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~ 94 (678)
T KOG1293|consen 16 YRLLHLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRI 94 (678)
T ss_pred HhhhcCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHH
Confidence 45667888888889999988877654 4566899999999999999533 345777888889999998888889999999
Q ss_pred CChHHHHHhhCCCC-hhHHHHHHHHHHHhcCCChhh-------------------------------------------H
Q psy12605 131 GAVPLFLRLLMSPH-SNVCEQAVWALGNIIGDGPQL-------------------------------------------R 166 (845)
Q Consensus 131 g~i~~L~~lL~s~~-~~v~~~a~~~L~nla~~~~~~-------------------------------------------r 166 (845)
+.++.|+++|++++ ..+++.+++++.++-..++.. +
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq 174 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQ 174 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhh
Confidence 99999999999998 889999999999997655311 0
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH---HhhcCCCCCCChhH-----HhhHHH--HHHhhcccCCchhhHHH
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV---NLCRNKDPPPSMST-----IIELLP--ALNILIHHHDTSVSIYL 236 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~-----~~~~l~--~L~~ll~~~~~~~~~~~ 236 (845)
..+...|+.+.+.-++.. .+...|.+|..+++ ++..+++. ..+.. ..+..+ .+.+++++++..
T Consensus 175 ~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~-~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s----- 247 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPL-GSMFLLGLLKDKGVNIRCVVTRLLKDPDFS----- 247 (678)
T ss_pred heeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCch-hHHHHHHHHhccccchhhhhhhhhhCCCcc-----
Confidence 111111222222111111 13456666777777 55555422 11111 112222 233444555554
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH-----HhcC--c-hh-hHHhhccCCchhhHHHHHHHH
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV-----IDSG--V-VP-SLIPLLSHKEVKVQTASLRAV 307 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~g--~-i~-~Lv~lL~~~~~~v~~~al~~L 307 (845)
.+..++.++.++-..+.+....+ .+.| . ++ ..+.++..|-......++...
T Consensus 248 --------------------~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~ 307 (678)
T KOG1293|consen 248 --------------------ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLF 307 (678)
T ss_pred --------------------HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhH
Confidence 44556666665544332111111 1111 0 00 111112222222222223333
Q ss_pred HHHhcCChhhHHHHhcCCccchhhHhhc------CCchhhHHHHHH---HHHHhhcCC-hHHHHHHHhcCChHHHHHHhh
Q psy12605 308 GNIVTGTDEQTQVILNCDALSHFPALLT------HPKEKICKEAVW---FLSNITAGN-QAQVQAVIDAGLLPKIIANLQ 377 (845)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~lL~------~~~~~~~~~a~~---~L~nl~~~~-~~~~~~l~~~~~i~~Lv~lL~ 377 (845)
+.++.--........+...++.+++++. ..++..+.-++. .+...+.+. ...++.+.+.-....+.....
T Consensus 308 c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~ 387 (678)
T KOG1293|consen 308 CILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPP 387 (678)
T ss_pred HHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccc
Confidence 3332211223334445556666666663 233433332221 122222221 122233333222222222222
Q ss_pred hcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCC
Q psy12605 378 KVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV 457 (845)
Q Consensus 378 ~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~ 457 (845)
. .+......|+.++-+++..-...+..+-...+.++|++++..++..|...++.+|+|+.-+-...+..+++.|+
T Consensus 388 ~-----kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 388 I-----KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred c-----ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 2 35677777777777776543334444555678999999999999999999999999999988889999999999
Q ss_pred hHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 458 VPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 458 l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
++.+.+++.+.+. ..+....|+|+++..+.
T Consensus 463 Id~l~s~~~~~~~-n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 463 IDILESMLTDPDF-NSRANSLWVLRHLMFNC 492 (678)
T ss_pred HHHHHHHhcCCCc-hHHHHHHHHHHHHHhcc
Confidence 9999999986654 67788999999987655
No 31
>KOG1241|consensus
Probab=99.52 E-value=4e-12 Score=138.13 Aligned_cols=632 Identities=14% Similarity=0.153 Sum_probs=347.3
Q ss_pred hhhcHHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcC-CHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q psy12605 42 AQVNLDMLVVEAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSG-ILPVLVECLERSDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~ 118 (845)
.+.-+..++ .....+ +..+++.|+.+|...+...+. +...=.+.+ ++...++.- .+++.+++..|..+|.++.+
T Consensus 170 sN~iLtaIv-~gmrk~e~s~~vRLaa~~aL~nsLef~~~-nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 170 SNDILTAIV-QGMRKEETSAAVRLAALNALYNSLEFTKA-NFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HhHHHHHHH-hhccccCCchhHHHHHHHHHHHHHHHHHH-hhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHH
Confidence 444444555 444443 456899999999887764321 111112223 344444554 56788999999999999998
Q ss_pred CChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH---HhcCChhhHHhhhcCCCCHHHHHHHH
Q psy12605 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV---INMGVVPPLLSFIKPDIPISFLRNVT 195 (845)
Q Consensus 119 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i---~~~g~i~~Lv~ll~~~~~~~~~~~a~ 195 (845)
-..+....-+.....+.-+.-++++++++..++.....++|.+.-+..... .+.|.- + .-..
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p-----------~~~~--- 311 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-P-----------SSKY--- 311 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-c-----------hhhH---
Confidence 778888777777788888888999999999999999999995432221111 111111 1 0000
Q ss_pred HHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh
Q psy12605 196 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ 275 (845)
Q Consensus 196 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 275 (845)
+.+ ......+|.|..++...|++-..--| | .-..|-.||.-.+.
T Consensus 312 -----fa~--------~a~~~v~P~Ll~~L~kqde~~d~DdW------n------------p~kAAg~CL~l~A~----- 355 (859)
T KOG1241|consen 312 -----FAR--------QALQDVVPVLLELLTKQDEDDDDDDW------N------------PAKAAGVCLMLFAQ----- 355 (859)
T ss_pred -----HHH--------HHHhHhhHHHHHHHHhCCCCcccccC------c------------HHHHHHHHHHHHHH-----
Confidence 000 12456778888887653222000000 0 22233333333332
Q ss_pred HHHHHhcCchhhHHhhc----cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHH
Q psy12605 276 IQMVIDSGVVPSLIPLL----SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~n 351 (845)
.+...++++.++++ ++++..-+.+|.-++|.+-.+.+..+..-+-.+++|.++.++.++.-.++..+.|+++.
T Consensus 356 ---~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 356 ---CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGR 432 (859)
T ss_pred ---HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHH
Confidence 22344555555555 67889999999999999988876666555666899999999999888999999999999
Q ss_pred hhcCChHHHHH-HHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHH-----HHHc---CChHHHHHh
Q psy12605 352 ITAGNQAQVQA-VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE-----VVAA---GAVPLFLRL 422 (845)
Q Consensus 352 l~~~~~~~~~~-l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-----l~~~---g~i~~Lv~l 422 (845)
++.+.++.+.. ......++.+++-|.+ .|.+-.++||++.+++.+..+.... .... ..+..|++.
T Consensus 433 I~d~l~e~~~n~~~l~~~l~~l~~gL~D------ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 433 IADFLPEAIINQELLQSKLSALLEGLND------EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHhhchhhcccHhhhhHHHHHHHHHhhh------CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 98877644322 2234566677777765 6899999999999998543321110 1111 112223333
Q ss_pred hCC---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCC---ChHHHHh-----ccCCCC---ChhHHHHHHHHHHHhhcCC
Q psy12605 423 LMS---PHSNVCEQAVWALGNIIGDGPQLRDYVINMG---VVPPLLS-----FIKPDI---PISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 423 L~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g---~l~~L~~-----ll~~~~---~~~~~~~~~~~l~nL~~~~ 488 (845)
-+. .....|..|..+|+.+...+++........- .+..|-. .+...+ -.+++...|.+|..+-+..
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~ 586 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKV 586 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 222 3457999999999999987765433332211 1111111 222111 1356667788888877766
Q ss_pred CCCCChhHHHhHHHHHHHhhcCCChhHH-HHHH------HHhhhcCchhhHHHHhhhhhhHHHHhhhccC---CCCcccc
Q psy12605 489 DPPPSMSTIIELLPALNILIHHHDTSVS-IYLW------LSIIEKNPQISKILVSKMKVCSRYLYYLSHN---SGPMSCQ 558 (845)
Q Consensus 489 ~~~~~~~~~~~~l~~l~~ll~~~d~~v~-~~~~------l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~~~~~ 558 (845)
.+ ........++..+.+++.+.+..+. ..++ ...|..+-. ...+.+..||... ..+-++-
T Consensus 587 ~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~---------kym~~f~pyL~~gL~n~~e~qVc 656 (859)
T KOG1241|consen 587 GS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA---------KYMPAFKPYLLMGLSNFQEYQVC 656 (859)
T ss_pred cc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH---------HHHHHHHHHHHHHhhcchHHHHH
Confidence 43 2233345678888888888444322 2221 222221110 1223333333221 1111112
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCC--ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
.++...++.++-.=+.. -.....+++..|+..|+++ +.+++..++.+++.|+..-..+.+...+ .++-+++.
T Consensus 657 ~~aVglVgdl~raL~~~-i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~-----~vm~llq~ 730 (859)
T KOG1241|consen 657 AAAVGLVGDLARALEDD-ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLE-----MVMPLLQQ 730 (859)
T ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHH
Confidence 22333333332100000 0112334556777778876 5688888999998887543333333332 22222221
Q ss_pred hhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHH
Q psy12605 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716 (845)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 716 (845)
.+. -+..+.-..+ ...-.++|+.+.
T Consensus 731 as~-----------------------------------~~~d~~~~~~--------------------~dYvd~LRe~~l 755 (859)
T KOG1241|consen 731 ASS-----------------------------------VQTDPADDSM--------------------VDYVDELREGIL 755 (859)
T ss_pred HHh-----------------------------------ccCCCCcccH--------------------HHHHHHHHHHHH
Confidence 100 0000000000 111124666666
Q ss_pred HHHHhhcccCCHHHHHHHHHcCCchHHhhhhcc------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hChHHHH
Q psy12605 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSC------KDAQVIQVVLDGINNMLKMADAQVETLANMIEE-CGGLDKI 789 (845)
Q Consensus 717 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~------~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e-~g~~~~L 789 (845)
.+-..+... -..+.....-.-.++.++.+++. .++.+...|+..|..|....+++. .+.+.. .-..+.|
T Consensus 756 eay~gi~qg-lk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~---~~~~~~~~~i~~~L 831 (859)
T KOG1241|consen 756 EAYTGIIQG-LKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGV---IKLFLDEDWIKDFL 831 (859)
T ss_pred HHHHHHHHH-hhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccch---hhhhcchHHHHHHH
Confidence 555555411 11111122223466677776653 235677888888999987766542 122222 3334455
Q ss_pred HhhhcCCCHHHHHHHHHHHHHh
Q psy12605 790 EMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 790 ~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
..-..+.+...++.|.|..+..
T Consensus 832 ~~~~k~~~~~tK~~A~wa~e~i 853 (859)
T KOG1241|consen 832 NEGRKSSTQKTKDLARWATEEI 853 (859)
T ss_pred HHhhhhhhhhhHHHHHHHHHHH
Confidence 5444556666777777776654
No 32
>KOG2122|consensus
Probab=99.51 E-value=2.4e-12 Score=147.36 Aligned_cols=378 Identities=17% Similarity=0.177 Sum_probs=267.5
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC---ChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP---HSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~---~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.|..+|. .++ +...+..|..++. +++....++..|.+|.|+++|--+ +.+.+..|-.+|.||.-..++-+..
T Consensus 201 sllsml~-t~D---~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~ 275 (2195)
T KOG2122|consen 201 SLLSMLG-TDD---EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG 275 (2195)
T ss_pred HHhhhcc-cCC---HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence 5555553 233 4566677888875 578888899999999999999765 4577888999999998766654433
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
=.+..+++ +|. .++..+..+-.-+-...+... ......
T Consensus 276 RRE~kvL~----lLe-----QIraYC~~~~~~lqar~~~~a-----------------pa~~~H---------------- 313 (2195)
T KOG2122|consen 276 RREKKVLH----LLE-----QIRAYCETCWTWLQARGPAIA-----------------PASDEH---------------- 313 (2195)
T ss_pred HHHHHHHH----HHH-----HHHHHHHHHHHHHHhcCCCCC-----------------Ccccch----------------
Confidence 33322232 221 333333222222222221000 001111
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC------------CchhhHHHHHHHHHHHhcCChh
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH------------KEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~------------~~~~v~~~al~~L~nl~~~~~~ 316 (845)
-...|..+|..++. +.+.+..+.+-|+++.+.+||.- ....++.+|..+|.||+.++..
T Consensus 314 --------~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~ 384 (2195)
T KOG2122|consen 314 --------QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVA 384 (2195)
T ss_pred --------hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc
Confidence 22345555555554 45667777788998888887721 1235899999999999999877
Q ss_pred hHHHHhc-CCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH-HhcCChHHHHHHhhhcccccCChhHHHHHHH
Q psy12605 317 QTQVILN-CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV-IDAGLLPKIIANLQKVGRIVLRPNLQFEAAW 394 (845)
Q Consensus 317 ~~~~i~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l-~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~ 394 (845)
.+..+.. .|++..++..|.+..+++....+.+|.||+=..+...+.+ -+.|-+..|..+.... .....-...+.
T Consensus 385 NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~----~kEsTLKavLS 460 (2195)
T KOG2122|consen 385 NKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN----KKESTLKAVLS 460 (2195)
T ss_pred chhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh----cccchHHHHHH
Confidence 6666554 3889999999999888898889999999975544444444 5578888888877665 35566678899
Q ss_pred HHHHHhcCChHhHHHHHHc-CChHHHHHhhCCCC----HHHHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHHhccC
Q psy12605 395 ALTNIASGTSAQTQEVVAA-GAVPLFLRLLMSPH----SNVCEQAVWALGNIIG---DGPQLRDYVINMGVVPPLLSFIK 466 (845)
Q Consensus 395 ~L~~l~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~----~~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~ 466 (845)
+|+||+.++.++...|+.- |++..|+.+|.... -.+.+.+-..|.|.+. ..+.+|+.+.+...+..|++.|+
T Consensus 461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence 9999999999999888876 88999999998663 3688899999999876 46778888888888888888887
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHh
Q psy12605 467 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLY 546 (845)
Q Consensus 467 ~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 546 (845)
+++- .++-++|.+|+||
T Consensus 541 S~SL-TiVSNaCGTLWNL-------------------------------------------------------------- 557 (2195)
T KOG2122|consen 541 SHSL-TIVSNACGTLWNL-------------------------------------------------------------- 557 (2195)
T ss_pred hcce-EEeecchhhhhhh--------------------------------------------------------------
Confidence 6542 4444555555554
Q ss_pred hhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCC
Q psy12605 547 YLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 614 (845)
Q Consensus 547 ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~ 614 (845)
+..+.+-.+.+.+.|++++|..++.+.+..+.+.++.+|-|+...-
T Consensus 558 ----------------------SAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 558 ----------------------SARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ----------------------hcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 4445555678888999999999999999999999999999998764
No 33
>KOG2023|consensus
Probab=99.49 E-value=3.3e-11 Score=128.90 Aligned_cols=623 Identities=16% Similarity=0.176 Sum_probs=335.3
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHH-HHh---cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEA-LIH---SGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~-i~~---~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
.++.++ ++|.++|...+..|..+|.+++.-... ..+. ... .-.+|+++++.+ +.+|.+|..|..++..+--..
T Consensus 129 lLp~L~-~~L~s~d~n~~EgA~~AL~KIcEDsa~-~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 129 LLPQLC-ELLDSPDYNTCEGAFGALQKICEDSAQ-FLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred HHHHHH-HHhcCCcccccchhHHHHHHHHhhhHH-HHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheeecC
Confidence 478888 899999999999999999998763211 1111 000 125999999995 678999999999998876432
Q ss_pred hhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCCCCHHHHHHHHHH
Q psy12605 121 SAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWV 197 (845)
Q Consensus 121 ~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~~a~~~ 197 (845)
+.. ..+. ...++.+..+-.+.++++|.+.+.+|..+-...+ +.+.- .++++.++...+.. ++++...|+..
T Consensus 206 ~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---dkl~phl~~IveyML~~tqd~-dE~VALEACEF 279 (885)
T KOG2023|consen 206 TQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---DKLVPHLDNIVEYMLQRTQDV-DENVALEACEF 279 (885)
T ss_pred cHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---HhcccchHHHHHHHHHHccCc-chhHHHHHHHH
Confidence 221 1221 2456777777788999999999999999874433 22221 13455555544444 55788889999
Q ss_pred HHHhhcCCCCCCC-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhCh----------hhHHhhhhh-H----------
Q psy12605 198 IVNLCRNKDPPPS-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNP----------QISKILVSK-M---------- 255 (845)
Q Consensus 198 L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~-~---------- 255 (845)
...++....+... .......+|.|+.-+...+.+. .|...+. -|...+... .
T Consensus 280 wla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~------~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~e 353 (885)
T KOG2023|consen 280 WLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI------ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDE 353 (885)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH------HHhcCccccccCCchhhhccchhhhchhccCccccccc
Confidence 9999987733222 1244577788877665444331 1111000 000000000 0
Q ss_pred --------HHHHHHHHHHHHhhcCChhhHHHHHhcCchhh----HHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 256 --------KILVDTVWALSYLTDGGNDQIQMVIDSGVVPS----LIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 256 --------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~----Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
+=-...-|.|+..+...-+...-+....+++. |-+.|.+++..++++++-++|.++.|. .+-++.
T Consensus 354 DdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p 430 (885)
T KOG2023|consen 354 DDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVP 430 (885)
T ss_pred cccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhccc
Confidence 00000112222222111111122223334444 444556778899999999999998653 222333
Q ss_pred C--CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 324 C--DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 324 ~--~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
+ ..+|.++.+|+++.+-+|.-.||+|+..+..-...- -+.-+.|.|-.+++.--+ .+.+||+.||.++.-+-.
T Consensus 431 ~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD--~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 431 HLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLD--SNKKVQEAACSAFATLEE 505 (885)
T ss_pred chHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence 2 367888999999999999999999998643211000 001123333333332211 378999999999998764
Q ss_pred CCh-HhHHHHHHcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCC---hHHHHHHHhCCChHHHHhcc---CCCCC-
Q psy12605 402 GTS-AQTQEVVAAGAVPLFLRLL---MSPHSNVCEQAVWALGNIIGDG---PQLRDYVINMGVVPPLLSFI---KPDIP- 470 (845)
Q Consensus 402 ~~~-~~~~~l~~~g~i~~Lv~lL---~~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~g~l~~L~~ll---~~~~~- 470 (845)
... +....+ ...+..|+..+ +..+--+...|+.+|+.-+++. +.+.+. .+++|+.-. +++++
T Consensus 506 ~A~~eLVp~l--~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiqi-----LmPPLi~KW~~lsd~DKd 578 (885)
T KOG2023|consen 506 EAGEELVPYL--EYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQI-----LMPPLIEKWELLSDSDKD 578 (885)
T ss_pred hccchhHHHH--HHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHH-----hccHHHHHHHhcCcccch
Confidence 321 111100 01122222222 2345557778888888766532 333332 467777543 33332
Q ss_pred -hhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHH---HHhhcC--CChhHH--------HHH-HHHhhhcCchh-hHHH
Q psy12605 471 -ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPAL---NILIHH--HDTSVS--------IYL-WLSIIEKNPQI-SKIL 534 (845)
Q Consensus 471 -~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l---~~ll~~--~d~~v~--------~~~-~l~~l~~~~~~-~~~~ 534 (845)
..+++.....-+-|-.++.|.. ......++..+ .+++.. .|+.+. .++ +++-|..+-.. ...+
T Consensus 579 LfPLLEClSsia~AL~~gF~P~~-~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~L 657 (885)
T KOG2023|consen 579 LFPLLECLSSIASALGVGFLPYA-QPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPL 657 (885)
T ss_pred HHHHHHHHHHHHHHHhccccccC-HHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHH
Confidence 2334444444444555554322 22223333322 222221 222211 111 13333332221 2234
Q ss_pred HhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCC
Q psy12605 535 VSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 614 (845)
Q Consensus 535 ~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~ 614 (845)
+..+++...++.++......+. ..+...+|.+.....+.. .=...++++.+-.-+...+-++...|+|+++.++..-
T Consensus 658 va~snl~~lll~C~~D~~peVR--QS~FALLGDltk~c~~~v-~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~ 734 (885)
T KOG2023|consen 658 VAQSNLLDLLLQCLQDEVPEVR--QSAFALLGDLTKACFEHV-IPNLADFLPILGANLNPENISVCNNAIWAIGEIALKM 734 (885)
T ss_pred hhhccHHHHHHHHhccCChHHH--HHHHHHHHHHHHHHHHhc-cchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHh
Confidence 4555666666677666554432 233444444432211100 0001133444444444456789999999999998432
Q ss_pred HHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhh
Q psy12605 615 QAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFA 694 (845)
Q Consensus 615 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (845)
....+..+. .++..|+.++.
T Consensus 735 g~~~~~~v~-~vl~~L~~iin----------------------------------------------------------- 754 (885)
T KOG2023|consen 735 GLKMKQYVS-PVLEDLITIIN----------------------------------------------------------- 754 (885)
T ss_pred chhhhhHHH-HHHHHHHHHhc-----------------------------------------------------------
Confidence 111111111 11222222221
Q ss_pred hhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhcc-ccHHHHHHHHHHHHHHHHhhHHH
Q psy12605 695 FISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSC-KDAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~-~d~~~~~~al~~L~~l~~~~~~~ 772 (845)
.......+-+..+.+++.+. ..+|+....-.+ .++.+-+..|.. .|.+-+..|..++++++...+.+
T Consensus 755 ---------~~~~~~tllENtAITIGrLg-~~~Pe~vAp~l~-~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~ 822 (885)
T KOG2023|consen 755 ---------RQNTPKTLLENTAITIGRLG-YICPEEVAPHLD-SFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSG 822 (885)
T ss_pred ---------ccCchHHHHHhhhhhhhhhh-ccCHHhcchhHH-HHHHHHHHHhcccccchhHHHHHHHHHHheeeCchh
Confidence 03344456667788888887 456665555444 455666665655 67888899999999999876654
No 34
>PRK09687 putative lyase; Provisional
Probab=99.49 E-value=1.9e-12 Score=133.43 Aligned_cols=255 Identities=17% Similarity=0.113 Sum_probs=198.9
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
-++.|+.+| .+++..+|..|+++|..+... .+++.+..++.++++.+|..|+++|+.+..... .
T Consensus 24 ~~~~L~~~L-~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 24 NDDELFRLL-DDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred cHHHHHHHH-hCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 377889999 577889999999999988632 377888899999999999999999999974321 1
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
...+++.|..++.++.+..++..|+.+|.+++...... ...++..+...+.++++.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~----------------- 143 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTN----------------- 143 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHH-----------------
Confidence 11246777777656556789999999999997544211 123556666777777777
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccc
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~ 328 (845)
++..++++|..+. +...++.|+.+|.++++.|+..|+.+|+.+..+++ .+++
T Consensus 144 --------VR~~a~~aLg~~~-----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~ 195 (280)
T PRK09687 144 --------VRFAVAFALSVIN-----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIRE 195 (280)
T ss_pred --------HHHHHHHHHhccC-----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHH
Confidence 8889999997553 22457889999999999999999999999833322 3567
Q ss_pred hhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH
Q psy12605 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ 408 (845)
Q Consensus 329 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (845)
.|+.++.+.+..+|..|.+.|+.+- + ...+|.|++.+.++ .++..++.+|+++-..
T Consensus 196 ~L~~~L~D~~~~VR~~A~~aLg~~~--~---------~~av~~Li~~L~~~-------~~~~~a~~ALg~ig~~------ 251 (280)
T PRK09687 196 AFVAMLQDKNEEIRIEAIIGLALRK--D---------KRVLSVLIKELKKG-------TVGDLIIEAAGELGDK------ 251 (280)
T ss_pred HHHHHhcCCChHHHHHHHHHHHccC--C---------hhHHHHHHHHHcCC-------chHHHHHHHHHhcCCH------
Confidence 7999999999999999999999862 1 24789999999763 3778899999988642
Q ss_pred HHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHH
Q psy12605 409 EVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGN 440 (845)
Q Consensus 409 ~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~n 440 (845)
.+++.|.+++. .++..++..+.++|..
T Consensus 252 -----~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -----TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -----hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 37899999997 8899999999998753
No 35
>KOG1222|consensus
Probab=99.44 E-value=1.1e-10 Score=120.22 Aligned_cols=362 Identities=14% Similarity=0.171 Sum_probs=261.1
Q ss_pred HHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC
Q psy12605 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 82 ~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
..+....++..||+.|.. ++.++.......|.+++-. .+++..+.+.|.|+.|++++...+++++...++.|.|++.+
T Consensus 298 lKMrrkniV~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 298 LKMRRKNIVAMLVKALDR-SNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHHhHHHHHHHHHcc-cchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc
Confidence 346678899999999964 4567778888889999865 67888899999999999999999999999999999999977
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHH
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSI 240 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l 240 (845)
+ ..|..++..|.+|.+..++.+++. ..-|+..+..++.+. ....+.....+++.+.+.+-. .+.+
T Consensus 376 ~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~--------- 441 (791)
T KOG1222|consen 376 S-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSE--------- 441 (791)
T ss_pred c-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCce---------
Confidence 5 689999999999999999988754 344677788887766 345566777899998876543 4444
Q ss_pred hhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHH
Q psy12605 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQ 319 (845)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~ 319 (845)
+-........+++-... +.+.+++..++..|+..- +..++ --++.++|++++....+.
T Consensus 442 ----------------vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn 500 (791)
T KOG1222|consen 442 ----------------VDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN 500 (791)
T ss_pred ----------------ecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence 22222212223433222 234555655666665543 33333 235678899888776666
Q ss_pred HHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 320 VILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 320 ~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
.+++ .+..|...++. .++....+++++++|+.....+-.+.+-+..++|.+-..|..+. ...++..+..-+++.
T Consensus 501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga---~eddLvL~~vi~~GT 575 (791)
T KOG1222|consen 501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA---DEDDLVLQIVIACGT 575 (791)
T ss_pred HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc---cchhhhhHHHHHhhh
Confidence 6664 45556666654 45677889999999998776666566667899999988888764 456777777777776
Q ss_pred HhcCChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHhccCCCCChhHHH
Q psy12605 399 IASGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVIN-MGVVPPLLSFIKPDIPISFLR 475 (845)
Q Consensus 399 l~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~ 475 (845)
++.. ......+..+|.++.|+++|+. .+.+...+.+++...+..+.. .|..+.+ ...-..|+.++... +.++++
T Consensus 576 ~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~-tr~~miket~~~AylIDLMHDk-N~eiRk 652 (791)
T KOG1222|consen 576 MARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL-TRRLMIKETALGAYLIDLMHDK-NAEIRK 652 (791)
T ss_pred hhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHhcc-cHHHHH
Confidence 6653 3456677788999999999985 577888999999999998844 4555544 44445677777654 347777
Q ss_pred HHHHHHHHhhcCC
Q psy12605 476 NVTWVIVNLCRNK 488 (845)
Q Consensus 476 ~~~~~l~nL~~~~ 488 (845)
.|-.++--++.+.
T Consensus 653 VCDn~LdIiae~d 665 (791)
T KOG1222|consen 653 VCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHHHHhh
Confidence 7777776666443
No 36
>PRK09687 putative lyase; Provisional
Probab=99.43 E-value=1.2e-11 Score=127.48 Aligned_cols=255 Identities=15% Similarity=0.063 Sum_probs=198.6
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
-.++.|..+|.+++..++..++++|+.+.... +++.+..++.++ +..+|..++++|..+-.....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~-----------~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQD-----------VFRLAIELCSSK-NPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcch-----------HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc---
Confidence 36889999999999999999999999986321 356677777666 558999999999998653311
Q ss_pred hhHHhhHHHHHHhh-cccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 211 MSTIIELLPALNIL-IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 211 ~~~~~~~l~~L~~l-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
...+++.|..+ ++++++. ++..|+.+|.++....... ...+++.+.
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~-------------------------VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~ 134 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSAC-------------------------VRASAINATGHRCKKNPLY-----SPKIVEQSQ 134 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHhccccccccc-----chHHHHHHH
Confidence 34677888877 5667777 8999999999885433211 123456677
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
..+.++++.|+..++.+|+.+-. ..+++.|+.++.++++.+|..|+.+|+.+..+++ ..+
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~ 194 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIR 194 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHH
Confidence 88888899999999999987631 1367899999999999999999999999844333 356
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
+.|+..+.+ .++.|+..|+++|+.+-.. .+++.|++.+.+++ ++..++.+|+++...
T Consensus 195 ~~L~~~L~D-----~~~~VR~~A~~aLg~~~~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----- 251 (280)
T PRK09687 195 EAFVAMLQD-----KNEEIRIEAIIGLALRKDK-----------RVLSVLIKELKKGT--VGDLIIEAAGELGDK----- 251 (280)
T ss_pred HHHHHHhcC-----CChHHHHHHHHHHHccCCh-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-----
Confidence 778888877 4899999999999986432 47999999999876 778899999998753
Q ss_pred HHHHhCCChHHHHhccCCCCChhHHHHHHHHHH
Q psy12605 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 482 (845)
Q Consensus 450 ~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~ 482 (845)
..++.|..++..+.+..+.+.+.|++.
T Consensus 252 ------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 ------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 257888899986667788888888765
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.38 E-value=4.6e-10 Score=129.84 Aligned_cols=314 Identities=17% Similarity=0.174 Sum_probs=223.4
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhh
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 181 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~l 181 (845)
++.-+..++.-|..+...+.+.. .+.+..++++.+.+...+.-+.-++..+...+++..-. ++..+.+=
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kd 87 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKD 87 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHh
Confidence 44555655555554443222222 58899999999999999999999999999877763222 35666666
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
+.++ +..++..|+.++++++. .......++.+.+++.++++. ++..|
T Consensus 88 l~~~-n~~~~~lAL~~l~~i~~-------~~~~~~l~~~v~~ll~~~~~~-------------------------VRk~A 134 (526)
T PF01602_consen 88 LNSP-NPYIRGLALRTLSNIRT-------PEMAEPLIPDVIKLLSDPSPY-------------------------VRKKA 134 (526)
T ss_dssp HCSS-SHHHHHHHHHHHHHH-S-------HHHHHHHHHHHHHHHHSSSHH-------------------------HHHHH
T ss_pred hcCC-CHHHHHHHHhhhhhhcc-------cchhhHHHHHHHHHhcCCchH-------------------------HHHHH
Confidence 7766 45789999999999872 234567888899999998887 99999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhh
Q psy12605 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKI 341 (845)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~ 341 (845)
+.++..+....++... .. +++.+..+|.++++.++.+|+.++..+ ..++.....+. ...+..|.+++...++-.
T Consensus 135 ~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~ 208 (526)
T PF01602_consen 135 ALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWL 208 (526)
T ss_dssp HHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHH
Confidence 9999988876665322 22 688999999999999999999999999 33332211111 134556666667889999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHH
Q psy12605 342 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421 (845)
Q Consensus 342 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~ 421 (845)
+...+.++..++...+..... ..+++.+..++.+. ++.+..+++.++..+..... .-..+++.|..
T Consensus 209 q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-----~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~ 274 (526)
T PF01602_consen 209 QIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-----SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIK 274 (526)
T ss_dssp HHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-----ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHH
Confidence 999999999987776655321 45677888888864 78999999999998876543 33457889999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 422 LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 422 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
++.+++++++..++.+|..++...+. .+ . .....+..+..+++..+++.+...+..++
T Consensus 275 lL~s~~~nvr~~~L~~L~~l~~~~~~---~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 275 LLSSSDPNVRYIALDSLSQLAQSNPP---AV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHTSSSHHHHHHHHHHHHHHCCHCHH---HH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred HhhcccchhehhHHHHHHHhhcccch---hh-h--hhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 99999999999999999999987622 11 1 12223334444555566666666666665
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.38 E-value=3.9e-08 Score=113.70 Aligned_cols=366 Identities=12% Similarity=0.102 Sum_probs=242.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
-++.++ .++.++|.+.+.-....+..+....++ .-.+ .+..+.+=+ .+++|.+|..|+++|+++-. ++..
T Consensus 69 LF~dVv-k~~~S~d~elKKLvYLYL~~ya~~~pe--lalL----aINtl~KDl-~d~Np~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 69 LFVDVV-KLAPSTDLELKKLVYLYVLSTARLQPE--KALL----AVNTFLQDT-TNSSPVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHH-HHhCCCCHHHHHHHHHHHHHHcccChH--HHHH----HHHHHHHHc-CCCCHHHHHHHHHHHHcCCc--HHHH
Confidence 366777 788899998888887777776543322 1111 366777777 46789999999999988853 3333
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
.. .++.+.+.+.+.++.||..|+.++.++-..+++ .+.+.|.++.|.+++... +..+..+|+.+|..++..
T Consensus 139 e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHh
Confidence 33 567788899999999999999999999866553 344567788899988765 458999999999999875
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
.+ ..+....+.+..|...+..-+++ .+...+..|....-.+.. + ...+
T Consensus 210 ~~--~~l~l~~~~~~~Ll~~L~e~~EW-------------------------~Qi~IL~lL~~y~P~~~~--e---~~~i 257 (746)
T PTZ00429 210 GS--EKIESSNEWVNRLVYHLPECNEW-------------------------GQLYILELLAAQRPSDKE--S---AETL 257 (746)
T ss_pred Cc--hhhHHHHHHHHHHHHHhhcCChH-------------------------HHHHHHHHHHhcCCCCcH--H---HHHH
Confidence 52 22334455556666666666777 333444444332111111 1 1245
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+..+.+.|.+.++.|...|++++.++.... +.....+.. ...+.++.+ .+.+++++..++..+.-+....+..
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~l---- 331 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNL---- 331 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHH----
Confidence 677888899999999999999999997542 222221111 233556666 4567789988888777775554432
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+... +..+.-... +...++.....+|..++..+. ... .+.-|.++..+.+.+++..++.+++.++.
T Consensus 332 f~~~-~~~Ff~~~~------Dp~yIK~~KLeIL~~Lane~N--v~~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 332 LRTN-LDSFYVRYS------DPPFVKLEKLRLLLKLVTPSV--APE-----ILKELAEYASGVDMVFVVEVVRAIASLAI 397 (746)
T ss_pred HHHH-HHhhhcccC------CcHHHHHHHHHHHHHHcCccc--HHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 2211 222222222 345789999999999986442 222 23556677778899999999999999997
Q ss_pred CChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 444 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 444 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
..+...+ ..+..|++++.... ++...++-++.++.+..
T Consensus 398 k~~~~a~-----~cV~~Ll~ll~~~~--~~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 398 KVDSVAP-----DCANLLLQIVDRRP--ELLPQVVTAAKDIVRKY 435 (746)
T ss_pred hChHHHH-----HHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHC
Confidence 6554333 34667888886533 34556777888887654
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.35 E-value=3.9e-11 Score=120.72 Aligned_cols=197 Identities=19% Similarity=0.214 Sum_probs=162.2
Q ss_pred HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh
Q psy12605 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 163 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~ 163 (845)
+++.+-+..|+.+|+.+.+|.++..|..++.+.+.. +.+...+.+.|+++.+..+|+++++.+++.|+++|.|++.+ .
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-D 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-h
Confidence 356677899999998788999999999999998864 78889999999999999999999999999999999999965 4
Q ss_pred hhHHHHHhcCChhhHHhhh-cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhh
Q psy12605 164 QLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIE 242 (845)
Q Consensus 164 ~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~ 242 (845)
+++..+-. .++.+++.+ ..+-+..++..++.+|.||+...+... .....+|.++.++..++..
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~---~l~~~i~~ll~LL~~G~~~----------- 149 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH---MLANYIPDLLSLLSSGSEK----------- 149 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh---hHHhhHHHHHHHHHcCChH-----------
Confidence 57776643 466666654 334456889999999999987664322 2456899999999998888
Q ss_pred hChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-chhhHHHHHHHHHHHhcC
Q psy12605 243 KNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-EVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~ 313 (845)
++..++++|.+|+..... .+.++.++++..++.++... +.++...++..+.|+..+
T Consensus 150 --------------~k~~vLk~L~nLS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 150 --------------TKVQVLKVLVNLSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred --------------HHHHHHHHHHHhccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 899999999999986554 45555888999999999664 678899999999999643
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.35 E-value=1.6e-10 Score=139.77 Aligned_cols=276 Identities=17% Similarity=0.157 Sum_probs=212.2
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..++.++ +.|.++|+.++..|+..|..... .+.++.|++.| .++++.+|..|+.+|..+....
T Consensus 621 ~~~~~L~-~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~--- 683 (897)
T PRK13800 621 PSVAELA-PYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVL--- 683 (897)
T ss_pred hhHHHHH-HHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcc---
Confidence 3567788 89999999999999999987532 22589999999 5778899999999998885321
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
...+.|...|+++++.+|..|+.+|+.+...+ ...++..|..+ +..+|..|+.+|..+-.
T Consensus 684 -------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~-d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 684 -------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDP-DHRVRIEAVRALVSVDD 743 (897)
T ss_pred -------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCC-CHHHHHHHHHHHhcccC
Confidence 13467888899999999999999999875322 23456667666 55899999999987521
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
.+.|..++.++++. ++..++.+|..+... ...
T Consensus 744 --------------~~~l~~~l~D~~~~-------------------------VR~~aa~aL~~~~~~---------~~~ 775 (897)
T PRK13800 744 --------------VESVAGAATDENRE-------------------------VRIAVAKGLATLGAG---------GAP 775 (897)
T ss_pred --------------cHHHHHHhcCCCHH-------------------------HHHHHHHHHHHhccc---------cch
Confidence 13355677888887 888999999877543 223
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
.++.|..+++++++.++..|+.+|+.+... . ...+.+...|.+.+..+|..|+++|..+..
T Consensus 776 ~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~--~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--------- 836 (897)
T PRK13800 776 AGDAVRALTGDPDPLVRAAALAALAELGCP--P--------DDVAAATAALRASAWQVRQGAARALAGAAA--------- 836 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--c--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---------
Confidence 367888999999999999999999988432 1 123557888999999999999999998732
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
...++.|+.+|.+ .++.||..|+++|..+. +++ ...+.|...+++++.+|+..|..+|..
T Consensus 837 --~~a~~~L~~~L~D-----~~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 837 --DVAVPALVEALTD-----PHLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred --cchHHHHHHHhcC-----CCHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2356889999987 48999999999999972 222 246778899999999999999998863
No 41
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.32 E-value=1.4e-10 Score=116.85 Aligned_cols=199 Identities=19% Similarity=0.247 Sum_probs=162.2
Q ss_pred HhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH
Q psy12605 280 IDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
.+++-++.|+.+|+. .++.+++.|+.++++.+.. +..+..+.+.|+++.+..++.++++.+|..|+++|.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 467778999999974 6899999999999998654 67788899999999999999999999999999999999766544
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
. ..+ + ..++.+++.+.+.. .+..+|..+..+|.+++..+ +....+. +.++.|+++|.+++..++.+++.+|
T Consensus 88 ~-~~I-k-~~i~~Vc~~~~s~~---lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 88 Q-EQI-K-MYIPQVCEETVSSP---LNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred H-HHH-H-HHHHHHHHHHhcCC---CCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHHHHH
Confidence 3 333 2 25777777665542 47899999999999997643 2333333 4799999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 439 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 439 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
.|++.+... ...++.++++..++.++....+.++...+.+.+.|+..+..
T Consensus 159 ~nLS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 159 VNLSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHhccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 999987554 45556667999999999998888999999999999977654
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.31 E-value=4e-11 Score=108.38 Aligned_cols=119 Identities=36% Similarity=0.571 Sum_probs=109.4
Q ss_pred HHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 83 ALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 83 ~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.+++.|+++.|+++|. ++++.++..++++|.+++..+++....+++.|++|.++++|.+++++++..|+++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4568899999999995 667899999999999999988889999999999999999999999999999999999999888
Q ss_pred hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 163 ~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
+..+..+.+.|+++.++++++.+ +..+++.++|+|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 78888889999999999999877 66899999999999873
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.31 E-value=4.5e-10 Score=135.88 Aligned_cols=276 Identities=20% Similarity=0.185 Sum_probs=208.3
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+.++.|++.| .++++.+|..|+.+|..+.. .+.++.|++.|+++++.+|..|+.+|+.+....+
T Consensus 620 ~~~~~~L~~~L-~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYL-ADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHh-cCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 44688999999 57889999999999998853 2478999999999999999999999998853222
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..+.+...|.++ +..+|..|+..|..+.... ...|...+.++|+.
T Consensus 685 -------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~--------------- 729 (897)
T PRK13800 685 -------PAPALRDHLGSP-DPVVRAAALDVLRALRAGD------------AALFAAALGDPDHR--------------- 729 (897)
T ss_pred -------chHHHHHHhcCC-CHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHH---------------
Confidence 124566667665 5589999998888764221 23566778888888
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++..|+.+|..+.. .+.|..++.++++.|+..++.+|+.+..... ..
T Consensus 730 ----------VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~ 776 (897)
T PRK13800 730 ----------VRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PA 776 (897)
T ss_pred ----------HHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hh
Confidence 88889988876521 2346778899999999999999999854311 23
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
++.|..+++++++.+|..|+.+|.++.... ..++.++..+.+ +++.+|..|+++|..+...
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d-----~d~~VR~~Aa~aL~~l~~~---- 837 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRA-----SAWQVRQGAARALAGAAAD---- 837 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcC-----CChHHHHHHHHHHHhcccc----
Confidence 677889999999999999999999983221 123567778877 4789999999999987532
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHH
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 482 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~ 482 (845)
..++.|+.+|.+++..||..|+++|+.+.. .+.. .+.|...+++. +..+++.+..+|.
T Consensus 838 -------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-~~~a---------~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 838 -------VAVPALVEALTDPHLDVRKAAVLALTRWPG-DPAA---------RDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred -------chHHHHHHHhcCCCHHHHHHHHHHHhccCC-CHHH---------HHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 357999999999999999999999999732 2222 34555666643 4567777776654
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.22 E-value=2.3e-10 Score=103.36 Aligned_cols=117 Identities=34% Similarity=0.570 Sum_probs=110.1
Q ss_pred HhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 321 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.+.|+++.+++++.+.+..++..++++|.+++.+.++....+++.++++.+++++.+ .++.++..++|+|++++
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-----EDEEVVKAALWALRNLA 77 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-----CCHHHHHHHHHHHHHHc
Confidence 5677999999999999999999999999999999988888999999999999999987 38999999999999999
Q ss_pred cCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 401 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 401 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.+.+.....+.+.|+++.+++++.+.+..++..++++|++++
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 998888888999999999999999999999999999999986
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.21 E-value=4.9e-09 Score=112.36 Aligned_cols=327 Identities=13% Similarity=0.138 Sum_probs=228.9
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHc-----CChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA-----GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~-----g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.++..++.+|+...++++....+..+..+...++.....+.+. ....+++.+|..++.-+...|+..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4688889999777788888899999999988877777777764 57788899999999999999999999998665
Q ss_pred hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhh
Q psy12605 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIE 242 (845)
Q Consensus 163 ~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~ 242 (845)
+.........-.++.+...+....+...+..++.+|..+.+.++.. ......++++.|+.+++.....+|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Q--------- 202 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQ--------- 202 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHH---------
Confidence 4321111100123345555555445678888999999999887544 334455688999998875332211
Q ss_pred hChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-CCchhhHHHHHHHHHHHhcCC------h
Q psy12605 243 KNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGT------D 315 (845)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~------~ 315 (845)
++..++.++.-++.... ....+...++++.++.+++ +..+++.+-++.+|.|+...+ .
T Consensus 203 --------------l~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 203 --------------LQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKK 267 (429)
T ss_pred --------------HHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhh
Confidence 66666666666665433 4455667799999999995 467889999999999998743 2
Q ss_pred hhHHHHhcCCccchhhHhhcC--CchhhHHHHHH-------HHHHhhc------------------C-C----hHHHHHH
Q psy12605 316 EQTQVILNCDALSHFPALLTH--PKEKICKEAVW-------FLSNITA------------------G-N----QAQVQAV 363 (845)
Q Consensus 316 ~~~~~i~~~~~l~~L~~lL~~--~~~~~~~~a~~-------~L~nl~~------------------~-~----~~~~~~l 363 (845)
.....++++|+.+.+-.+... .|+++....-. .+..++. | + .++...+
T Consensus 268 ~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf 347 (429)
T cd00256 268 TAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRL 347 (429)
T ss_pred hHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHH
Confidence 234566776665544444432 35554432211 1111110 1 0 1111222
Q ss_pred Hhc--CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 364 IDA--GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 364 ~~~--~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
-+. .++..|+++|... .++.+..-||.=++.++.+.|..+..+-+.|+=..+.+++.+++++|+..|+.|+..+
T Consensus 348 ~~~~~~llk~L~~iL~~s----~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 348 NEKNYELLKILIHLLETS----VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HhcchHHHHHHHHHHhcC----CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 222 2578899999654 4778888899999999999999999898999999999999999999999999999877
Q ss_pred hc
Q psy12605 442 IG 443 (845)
Q Consensus 442 ~~ 443 (845)
..
T Consensus 424 m~ 425 (429)
T cd00256 424 MV 425 (429)
T ss_pred HH
Confidence 53
No 46
>KOG0946|consensus
Probab=99.18 E-value=4.2e-07 Score=100.04 Aligned_cols=340 Identities=15% Similarity=0.200 Sum_probs=253.6
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCC
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~ 120 (845)
..+.|+.++-+.-+++-++.|..|+..|+.+.. ..+.-+.+.++++|++.|+++ .++++-..++.++..+..++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr-----kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR-----KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH-----HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 346788888444466788999999999988743 235555666789999999655 57889999999999988754
Q ss_pred h------h----------hHHHHH-HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-ChhhHHHHHhc-CChhhHHhh
Q psy12605 121 S------A----------QTQEVV-AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQLRDYVINM-GVVPPLLSF 181 (845)
Q Consensus 121 ~------~----------~~~~i~-~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~~r~~i~~~-g~i~~Lv~l 181 (845)
. + ....++ ..+.|..|+..+...+-.||..++..|.++-.. .++.++.+... -+|..++.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 2 1 122233 368899999999999999999999999988654 45678877754 579999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC---CchhhHHHHHHHhhhChhhHHhhhhhHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH---DTSVSIYLWLSIIEKNPQISKILVSKMKIL 258 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (845)
|... .+-+|-.++..|..+.+++...++....++++..|+.++..+ |..+ +.
T Consensus 175 L~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgI------------------------Vv 229 (970)
T KOG0946|consen 175 LRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGI------------------------VV 229 (970)
T ss_pred Hhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcc------------------------hH
Confidence 9876 446888999999999999988888899999999999999754 2322 88
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC---Cc----------hhhHHHHHHHHHHHhcCC-h-----hhHH
Q psy12605 259 VDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH---KE----------VKVQTASLRAVGNIVTGT-D-----EQTQ 319 (845)
Q Consensus 259 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~---~~----------~~v~~~al~~L~nl~~~~-~-----~~~~ 319 (845)
.+|+..|.++-..+..+...+.+.+.+|+|.++|.. .+ ..-...++.+++.++... . ..+.
T Consensus 230 eDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk 309 (970)
T KOG0946|consen 230 EDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQK 309 (970)
T ss_pred HHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999998888888999999999999988832 12 112346777888777532 1 2345
Q ss_pred HHhcCCccchhhHhhcCC--chhhHHHHHHHHHHhhcCChHHHHHHHhcCC------hHHHHHHhhhcccccCChhHHHH
Q psy12605 320 VILNCDALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAGL------LPKIIANLQKVGRIVLRPNLQFE 391 (845)
Q Consensus 320 ~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~------i~~Lv~lL~~~~~~~~~~~v~~~ 391 (845)
.+..++++..|..++-++ ..+++..+..+++++.+++......+.+..+ .|.++-++.........+..|..
T Consensus 310 ~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcA 389 (970)
T KOG0946|consen 310 ALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCA 389 (970)
T ss_pred HHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHH
Confidence 777888999999998776 4678899999999999998887777754321 22233222221111156788999
Q ss_pred HHHHHHHHhcCChHhHHHHH
Q psy12605 392 AAWALTNIASGTSAQTQEVV 411 (845)
Q Consensus 392 a~~~L~~l~~~~~~~~~~l~ 411 (845)
..+++......+.+....++
T Consensus 390 v~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 390 VLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred HHHHHHHHHhcchhhHHHHH
Confidence 99999998877666555443
No 47
>KOG0168|consensus
Probab=99.17 E-value=6.4e-09 Score=114.69 Aligned_cols=251 Identities=20% Similarity=0.265 Sum_probs=188.3
Q ss_pred CchhhHHHHHHHHHH-hhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCC
Q psy12605 337 PKEKICKEAVWFLSN-ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 415 (845)
Q Consensus 337 ~~~~~~~~a~~~L~n-l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~ 415 (845)
.|+..+.+|+.-|+. |..++.+....+--..++|.|+.+|+.. .+.++...||+||.+++.--|.....+++.++
T Consensus 180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E----~n~DIMl~AcRaltyl~evlP~S~a~vV~~~a 255 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE----HNFDIMLLACRALTYLCEVLPRSSAIVVDEHA 255 (1051)
T ss_pred CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHhhccchhheeecccc
Confidence 367777777666665 3445555544444456899999999987 58999999999999999999999999999999
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 416 VPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 494 (845)
Q Consensus 416 i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~ 494 (845)
||.|+.-|. -+..+|-++++.+|..|++..+. +++++|++-..+.++.- .+...+|.+..+..|+|..- +...+
T Consensus 256 IPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDF-FSi~aQR~AlaiaaN~Cksi-~sd~f 330 (1051)
T KOG0168|consen 256 IPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDF-FSIHAQRVALAIAANCCKSI-RSDEF 330 (1051)
T ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC-CCccc
Confidence 999886554 56789999999999999987764 68899999999988853 34578999999999999877 45678
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCC
Q psy12605 495 STIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGT 572 (845)
Q Consensus 495 ~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~ 572 (845)
..+.+.+|.|..+++..|...+.+ |. +.++.++... .
T Consensus 331 ~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-----------------------------------------~ 369 (1051)
T KOG0168|consen 331 HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-----------------------------------------G 369 (1051)
T ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-----------------------------------------C
Confidence 899999999999999999887665 43 4444432111 1
Q ss_pred hhhHHHHHhCCcccchHHhhcCC----ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhh
Q psy12605 573 DEQTQVILNCDALSHFPALLTHP----KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKR 637 (845)
Q Consensus 573 ~~~~~~l~~~~~l~~L~~ll~~~----~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 637 (845)
++..+++...|++.-...++.-. +..+......+++-++.+.+-..+.+...++...+-.+++..
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 22224444444444444444322 235666778888888888888888888888888888887543
No 48
>KOG0946|consensus
Probab=99.17 E-value=3.8e-07 Score=100.41 Aligned_cols=359 Identities=15% Similarity=0.198 Sum_probs=242.4
Q ss_pred ChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 132 AVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 132 ~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.|+.|+.-+.++ -.+=|..|+++|-.++ ..+|..+...| ++++++.|..+. +.++...+..++.++..+.+...
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~s---rkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFS---RKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHH---HHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 455555555443 3456899999999987 46888887765 788888886553 56778888888888877664211
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
.+ .++ .. .-.-..|.-- .++-..+.|..++
T Consensus 99 v~--------------dds-~q-------------------------sdd~g~~iae----------~fik~qd~I~lll 128 (970)
T KOG0946|consen 99 VM--------------DDS-TQ-------------------------SDDLGLWIAE----------QFIKNQDNITLLL 128 (970)
T ss_pred hc--------------ccc-hh-------------------------hhHHHHHHHH----------HHHcCchhHHHHH
Confidence 11 000 01 1122333211 2334558889999
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCCh-hhHHHHh-cCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTD-EQTQVIL-NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG 367 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~ 367 (845)
.++...+-.||.+++..|.++.+..+ +.++.++ ..-++..++.+|.+..+.+|.++...|..++.+++...+.+.=.+
T Consensus 129 ~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFEN 208 (970)
T KOG0946|consen 129 QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFEN 208 (970)
T ss_pred HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHH
Confidence 99999999999999999999976543 4455444 346899999999999999999999999999999888777777789
Q ss_pred ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC---CCHHH----------HHHH
Q psy12605 368 LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS---PHSNV----------CEQA 434 (845)
Q Consensus 368 ~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~---~~~~v----------~~~a 434 (845)
+...|+.++...+.. +..-|...+...+.|+...+..+...+.+.+.+|.|.++|.- .+.++ ...+
T Consensus 209 aFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~ 287 (970)
T KOG0946|consen 209 AFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEA 287 (970)
T ss_pred HHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHH
Confidence 999999999887533 344677889999999999999999999999999999988863 23211 1234
Q ss_pred HHHHHHhhcC------ChHHHHHHHhCCChHHHHhccCCC-CChhHHHHHHHHHHHhhcCCCCCCC---------hhHHH
Q psy12605 435 VWALGNIIGD------GPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPS---------MSTII 498 (845)
Q Consensus 435 ~~~L~nl~~~------~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~~~~~~~~---------~~~~~ 498 (845)
+.++..+..- ...+.+.+..++++..|..++-+. -+.+++....-++++..|+....+. .+--+
T Consensus 288 Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 288 LQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPR 367 (970)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCc
Confidence 4444444431 234556788999999999887654 6667777777788888876532111 11001
Q ss_pred hHHHHH-HHhhcCC-ChhHHH---HHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccC
Q psy12605 499 ELLPAL-NILIHHH-DTSVSI---YLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHN 551 (845)
Q Consensus 499 ~~l~~l-~~ll~~~-d~~v~~---~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 551 (845)
+.+-.+ ..+..+. ....+. +|+.+|+.++.+.+.. ++.+++..-.+.
T Consensus 368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~------~l~tllp~~~ns 419 (970)
T KOG0946|consen 368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK------FLKTLLPSSTNS 419 (970)
T ss_pred cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH------HHHHHhhhhccc
Confidence 122222 2333332 223333 3557888887766554 344555544443
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.06 E-value=2.3e-08 Score=107.30 Aligned_cols=300 Identities=14% Similarity=0.133 Sum_probs=200.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+..++ +.|+.+|.-.+..|...+..+.+.+... .......-+++.|...|+..++.+.+..|+.+|..+... ++.+
T Consensus 102 ~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R 178 (429)
T cd00256 102 TWEPFF-NLLNRQDQFIVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYR 178 (429)
T ss_pred chHHHH-HHHcCCchhHHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHH
Confidence 355667 7888888889999999999888754321 111111124567777775445567788889999999865 6788
Q ss_pred HHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 125 QEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
..+.+.++++.|+.+|+.. +..++.+++-|++-++.+. +..+.....+.|+.++++++....+.+.|.++.+|.|+.
T Consensus 179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 8899999999999999763 4588899999999999664 466666678999999999998888899999999999999
Q ss_pred cCCCCCC---C--hhHHh-hHHHHHHhhccc--CCchhh--HHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH-Hh---
Q psy12605 203 RNKDPPP---S--MSTII-ELLPALNILIHH--HDTSVS--IYLWLSIIEKNPQISKILVSKMKILVDTVWALS-YL--- 268 (845)
Q Consensus 203 ~~~~~~~---~--~~~~~-~~l~~L~~ll~~--~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~-~l--- 268 (845)
....... . ..... +.++.+-.+... .|+++. +..+......+-+ .... .-++...... .|
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k--~lts----fD~Y~~El~sg~L~WS 331 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ--DLSS----FDEYKSELRSGRLHWS 331 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH--HcCC----HHHHHHHHhcCCccCC
Confidence 8542111 1 11222 444444444433 355421 0111000000000 0000 0000000000 00
Q ss_pred hcCC-----hhhHHHHHhc--CchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchh
Q psy12605 269 TDGG-----NDQIQMVIDS--GVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340 (845)
Q Consensus 269 ~~~~-----~~~~~~~~~~--g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~ 340 (845)
.-|. .++...+-+. .++..|+.+| .+.++.+..-||.=||.++...+..+..+.+.|+-..++.++.++|++
T Consensus 332 p~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~ 411 (429)
T cd00256 332 PVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPN 411 (429)
T ss_pred CCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHH
Confidence 0011 1233444333 3567889999 456788888999999999998888888888889999999999999999
Q ss_pred hHHHHHHHHHHhhc
Q psy12605 341 ICKEAVWFLSNITA 354 (845)
Q Consensus 341 ~~~~a~~~L~nl~~ 354 (845)
+|.+|+.++..+..
T Consensus 412 Vr~eAL~avQklm~ 425 (429)
T cd00256 412 VRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988743
No 50
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.04 E-value=3.5e-07 Score=96.99 Aligned_cols=482 Identities=15% Similarity=0.116 Sum_probs=282.4
Q ss_pred HhhhcHHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCCccHHHHHh---cC-CHHHHHHhhccCCChhHHHHHHHHHH
Q psy12605 41 MAQVNLDMLVVEAARK--DNPELQLLAVQSARKLLSSDKNPPIEALIH---SG-ILPVLVECLERSDRPNLQFEAAWALT 114 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~---~g-~i~~Lv~lL~~~~~~~i~~~a~~~L~ 114 (845)
+.+.-+..++ ..-.+ ++..+++.|+.+|..-+-.-+ ..+-. .+ ++...++.- .+++.+++..|..||.
T Consensus 173 ~sN~il~aiv-~ga~k~et~~avRLaaL~aL~dsl~fv~----~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~ 246 (858)
T COG5215 173 MSNVILFAIV-MGALKNETTSAVRLAALKALMDSLMFVQ----GNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLN 246 (858)
T ss_pred HhhHHHHHHH-HhhcccCchHHHHHHHHHHHHHHHHHHH----Hhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHH
Confidence 3444444444 33333 355678888888877433110 11111 11 233334444 4577899999999999
Q ss_pred HHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh----------------cCChhhH
Q psy12605 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN----------------MGVVPPL 178 (845)
Q Consensus 115 ~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~----------------~g~i~~L 178 (845)
++-.-..+..+...+.-......+.++++++++..+|+.....+|.+.-+..-.+.. .+++|.|
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 998877777788888778888889999999999999999998888653322211111 1367777
Q ss_pred HhhhcCCC------CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhh
Q psy12605 179 LSFIKPDI------PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252 (845)
Q Consensus 179 v~ll~~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (845)
+++|.+.. +=...-.|..||--++..... ....+.+..+-+-+.+++..
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~--------------------- 381 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWA--------------------- 381 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhh---------------------
Confidence 77775411 112222333333333222110 12233444444445555554
Q ss_pred hhHHHHHHHHHHHHHhhcCChhh-HHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhh
Q psy12605 253 SKMKILVDTVWALSYLTDGGNDQ-IQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFP 331 (845)
Q Consensus 253 ~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~ 331 (845)
-++.+..++..+..+..+. ...+ -...+|.+...+.++.-.++..+.+|++.++.+ ....+-.+|.++..+
T Consensus 382 ----nreaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~v 453 (858)
T COG5215 382 ----NREAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEV 453 (858)
T ss_pred ----hHHHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHH
Confidence 6677777887777665443 3333 446777888888877788999999999999743 444555566666555
Q ss_pred HhhcC---CchhhHHHHHHHHHHhhcCChHHHHHH--HhcCChHHHHHHhhhccccc-CChhHHHHHHHHHHHHhcCChH
Q psy12605 332 ALLTH---PKEKICKEAVWFLSNITAGNQAQVQAV--IDAGLLPKIIANLQKVGRIV-LRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 332 ~lL~~---~~~~~~~~a~~~L~nl~~~~~~~~~~l--~~~~~i~~Lv~lL~~~~~~~-~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
....- ..+.+..+++|..-|++.+-++..... .-....+.++..|-...... -+...|..+-.+|+.+...+++
T Consensus 454 sa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 454 SASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD 533 (858)
T ss_pred HHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence 54422 346677889999999987765544211 11223333333332211000 2456666666677776655444
Q ss_pred hHHHHHH----------cCChHHHHHhhCCCC----HHHHHHHHHHHHHhhcCC----hHHHHHHHhCCChHHHHhccCC
Q psy12605 406 QTQEVVA----------AGAVPLFLRLLMSPH----SNVCEQAVWALGNIIGDG----PQLRDYVINMGVVPPLLSFIKP 467 (845)
Q Consensus 406 ~~~~l~~----------~g~i~~Lv~lL~~~~----~~v~~~a~~~L~nl~~~~----~~~~~~l~~~g~l~~L~~ll~~ 467 (845)
....+.. ...+..+-+.+..++ ++++.+-+..|..+.... +...+. .+..+++++++
T Consensus 534 ~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~-----lm~Lf~r~les 608 (858)
T COG5215 534 AVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQ-----LMELFIRILES 608 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH-----HHHHHHHHHhc
Confidence 3222211 023333444444333 456667777777666422 222232 35677888887
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCC-hhHHHhHHHHHHHhhcCCChhHHHHHH--HHhhhcCchhhHHHHhhhhhhHHH
Q psy12605 468 DIPISFLRNVTWVIVNLCRNKDPPPS-MSTIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISKILVSKMKVCSRY 544 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~~~~~~-~~~~~~~l~~l~~ll~~~d~~v~~~~~--l~~l~~~~~~~~~~~~~~~~~~~L 544 (845)
..+......+..++++|+..-. .. ......++|++.+-++..|..+...+. +.-|+..- ..+...........|
T Consensus 609 ~~~t~~~~dV~~aIsal~~sl~--e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl-~~df~~y~d~~ms~L 685 (858)
T COG5215 609 TKPTTAFGDVYTAISALSTSLE--ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL-GTDFNIYADVLMSSL 685 (858)
T ss_pred cCCchhhhHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 7665666677778888876331 11 134466888888888877877766543 33333211 112223445677889
Q ss_pred HhhhccCCCCccccccccccccccc
Q psy12605 545 LYYLSHNSGPMSCQKKQHSIYMCVS 569 (845)
Q Consensus 545 ~~ll~~~~~~~~~~~~~l~~l~nl~ 569 (845)
+++|.++......+.+.+++++.|+
T Consensus 686 vQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 686 VQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHhcChhhccccchHHHHHHHHHH
Confidence 9999999888888877888777654
No 51
>KOG1824|consensus
Probab=98.97 E-value=1.9e-06 Score=96.63 Aligned_cols=488 Identities=14% Similarity=0.172 Sum_probs=265.1
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChH
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~ 134 (845)
++.|.++++.|+.++..++..-.+..... -...++.+++-| .+.-.|..|+.+|+.++...-.....-+-..+++
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~e--L~~~L~il~eRl---~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~ 654 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNE--LPRTLPILLERL---GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILP 654 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHH---hchhHHHHHHHHHHHHHhccceeehhhhHHHHHH
Confidence 45678899999999998877543211111 113455666666 3456789999999999865333332333356889
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhH
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 213 (845)
.+...+......++...+.++-.+...... ......+. ++.-+..++... +..+-..|+.+|..+.... +......
T Consensus 655 ~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lises-dlhvt~~a~~~L~tl~~~~-ps~l~~~ 731 (1233)
T KOG1824|consen 655 ELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISES-DLHVTQLAVAFLTTLAIIQ-PSSLLKI 731 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcc-cHHHHHH
Confidence 999999888788888877777766533211 11111111 122233333333 5567778888888888876 3333455
Q ss_pred HhhHHHHHHhhcccCCchh-hHHHH----HHH-hhhChhhHHhhhhh-----------HHHHHHH----HHHHHHhhcCC
Q psy12605 214 IIELLPALNILIHHHDTSV-SIYLW----LSI-IEKNPQISKILVSK-----------MKILVDT----VWALSYLTDGG 272 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~-~~~~~----~~l-~~~~~~~~~~~~~~-----------~~~~~~a----~~~L~~l~~~~ 272 (845)
....++.+..+++++--.. -..++ .++ ....|..-...+.. -.+-..| +.|.+.++...
T Consensus 732 ~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~ 811 (1233)
T KOG1824|consen 732 SNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCAC 811 (1233)
T ss_pred hhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhc
Confidence 6678888888887654321 11111 111 11222111000000 0011112 22222222211
Q ss_pred hhhHHHHHhcCchhhHHhhcc--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHH
Q psy12605 273 NDQIQMVIDSGVVPSLIPLLS--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLS 350 (845)
Q Consensus 273 ~~~~~~~~~~g~i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 350 (845)
.+. .......++.-+. ..+..++.-|+-.+|.+-.+.+... ..+.-..++..+.+++++++.+|..+|+
T Consensus 812 ~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 812 PQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred ccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 111 1122233333333 3356688888888888865533221 1234457888999999999999999999
Q ss_pred HhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHhhCCCCHH
Q psy12605 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSN 429 (845)
Q Consensus 351 nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~ 429 (845)
+++.++-+. .+|.+++.+.+. +.=|+--...|..+.. .+.+..+ -.-...+..|.+-.....+.
T Consensus 883 sl~vgnl~~--------yLpfil~qi~sq------pk~QyLLLhSlkevi~~~svd~~~-~~v~~IW~lL~k~cE~~eeg 947 (1233)
T KOG1824|consen 883 SLAVGNLPK--------YLPFILEQIESQ------PKRQYLLLHSLKEVIVSASVDGLK-PYVEKIWALLFKHCECAEEG 947 (1233)
T ss_pred hhhcCchHh--------HHHHHHHHHhcc------hHhHHHHHHHHHHHHHHhccchhh-hhHHHHHHHHHHhcccchhh
Confidence 998876543 466666666553 3334444444443322 1111111 01112334455555566777
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 430 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
.|.-.+.|||.++...|+. .++.|-..+.+..+ ..+..++.++. +.-...|++--..+.+.+..+..+++
T Consensus 948 tR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~-~~rs~vvsavK-fsisd~p~~id~~lk~~ig~fl~~~~ 1017 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEAS-NTRSSVVSAVK-FSISDQPQPIDPLLKQQIGDFLKLLR 1017 (1233)
T ss_pred hHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCc-chhhhhhheee-eeecCCCCccCHHHHHHHHHHHHHHh
Confidence 8899999999999876642 34455444444332 22222222222 22222344555677889999999999
Q ss_pred CCChhHHHHHH--HH-hhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCccc
Q psy12605 510 HHDTSVSIYLW--LS-IIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALS 586 (845)
Q Consensus 510 ~~d~~v~~~~~--l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~ 586 (845)
+.|.+|+..++ ++ .....|.-.+ ++.+.|+..+-+.+.-- .+ .-.-++.|-+.
T Consensus 1018 dpDl~VrrvaLvv~nSaahNKpslIr------DllpeLLp~Ly~eTkvr-----------------ke-lIreVeMGPFK 1073 (1233)
T KOG1824|consen 1018 DPDLEVRRVALVVLNSAAHNKPSLIR------DLLPELLPLLYSETKVR-----------------KE-LIREVEMGPFK 1073 (1233)
T ss_pred CCchhHHHHHHHHHHHHHccCHhHHH------HHHHHHHHHHHHhhhhh-----------------Hh-hhhhhcccCcc
Confidence 99999987755 32 3333333222 45666666654432210 00 01123445443
Q ss_pred chHHhhcCCChhHHHHHHHHHhhhcc
Q psy12605 587 HFPALLTHPKEKICKEAVWFLSNITA 612 (845)
Q Consensus 587 ~L~~ll~~~~~~v~~~a~~~Lsnl~~ 612 (845)
+.+ +..-++|+.|+.++..+..
T Consensus 1074 H~V----DdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1074 HTV----DDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred ccc----cchHHHHHHHHHHHHHHHH
Confidence 322 1234788888888877653
No 52
>KOG1824|consensus
Probab=98.96 E-value=1.5e-06 Score=97.45 Aligned_cols=296 Identities=18% Similarity=0.216 Sum_probs=164.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-------------------------------------cC
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-------------------------------------SG 88 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-------------------------------------~g 88 (845)
+..++ +.|.+.++++|..|++++.-+.+.-+......+++ ..
T Consensus 49 v~~lL-klL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 49 VKMLL-KLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHH-HHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 44556 78899999999999999985544321111111111 11
Q ss_pred ----CHHHHHHhhcc-CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh
Q psy12605 89 ----ILPVLVECLER-SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 163 (845)
Q Consensus 89 ----~i~~Lv~lL~~-~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~ 163 (845)
+.|.|++.+.. .+...++..++..+..+-+.-...... ++.+....++..|.++...++..|+.+|+.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 23333333321 123347777777777665432222222 456677788888899999999999999999986543
Q ss_pred hhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhc---ccCCchhhHHHHHH-
Q psy12605 164 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI---HHHDTSVSIYLWLS- 239 (845)
Q Consensus 164 ~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~~~~~~~~- 239 (845)
+.... +.+..+++-|.+.......+.-+.+|..+|+.... +.-......+|.+.+.. +..+.+.+.+++.+
T Consensus 207 --~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQal 281 (1233)
T KOG1824|consen 207 --RDLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQAL 281 (1233)
T ss_pred --HHHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHH
Confidence 22222 35777777777777777888889999999987632 22234567788888887 55666655555532
Q ss_pred --HhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC-------hhhHHHHHhcC-chhhHHhhccC--CchhhHHHHHHHH
Q psy12605 240 --IIEKNPQISKILVSKMKILVDTVWALSYLTDGG-------NDQIQMVIDSG-VVPSLIPLLSH--KEVKVQTASLRAV 307 (845)
Q Consensus 240 --l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g-~i~~Lv~lL~~--~~~~v~~~al~~L 307 (845)
....+|.--. .--.++..-+ +.|++-.+ .+-...+.+.+ --+.-=++=++ -++.||.+|++|+
T Consensus 282 e~fl~rcp~ei~--p~~pei~~l~---l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl 356 (1233)
T KOG1824|consen 282 ESFLRRCPKEIL--PHVPEIINLC---LSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCL 356 (1233)
T ss_pred HHHHHhChhhhc--ccchHHHHHH---HHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHH
Confidence 2223331100 0001122222 33333211 11111111110 00000001011 1356999999999
Q ss_pred HHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 308 GNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
..+.....+.-..+.+ ..-|.++.-++...+.++.....+...+..
T Consensus 357 ~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 357 EAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLK 402 (1233)
T ss_pred HHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9987665443333332 244777777777777777666655555433
No 53
>KOG2160|consensus
Probab=98.94 E-value=3.1e-08 Score=100.96 Aligned_cols=190 Identities=19% Similarity=0.287 Sum_probs=158.8
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhH
Q psy12605 99 RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178 (845)
Q Consensus 99 ~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~L 178 (845)
++.+++-+..|..-|..++. +-++...+...|++++++..+++++..+|+.|+|+++..+..+|..++.+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 34567888999999999985 58899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHH
Q psy12605 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKIL 258 (845)
Q Consensus 179 v~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (845)
+..+..+.+...+..|.++++.+.++..+........+....|...+.+.+.+++ .+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~-----------------------lk 228 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVK-----------------------LK 228 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchH-----------------------HH
Confidence 9999988888999999999999999998888777777778899999988544421 66
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 259 VDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 259 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
..++..+.++..........+...+....+..+....+.++.+.++.++..+..
T Consensus 229 rK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 229 RKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777888888876554444444444666667777777788888888888877654
No 54
>KOG0213|consensus
Probab=98.86 E-value=1.3e-05 Score=87.70 Aligned_cols=555 Identities=13% Similarity=0.114 Sum_probs=293.0
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHH
Q psy12605 100 SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179 (845)
Q Consensus 100 ~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv 179 (845)
+.+..+|..++.+|..++....-..-..++ .++.+|-+-..+........-+.++|.++-....--.-.+...++-.++
T Consensus 564 De~qkVR~itAlalsalaeaa~Pygie~fD-sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~ 642 (1172)
T KOG0213|consen 564 DEQQKVRTITALALSALAEAATPYGIEQFD-SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILI 642 (1172)
T ss_pred ccchhhhhHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHH
Confidence 356678888888888887532222221111 1334444444444555666778888888855432212222212233333
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHH
Q psy12605 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259 (845)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (845)
+-.+++ +++++...+..+..+|........+ .....+|.++..+-..... ...+-+. ...
T Consensus 643 rEf~sP-DeemkkivLKVv~qcc~t~Gv~~~y-~r~dilp~ff~~fw~rrmA----------~drr~yk--------qlv 702 (1172)
T KOG0213|consen 643 REFGSP-DEEMKKIVLKVVKQCCATDGVEPAY-IRFDILPEFFFSFWGRRMA----------LDRRNYK--------QLV 702 (1172)
T ss_pred HhhCCC-hHHHHHHHHHHHHHHhcccCCCHHH-HhhhhhHHHHhhhhhhhhh----------ccccchh--------hHH
Confidence 333444 5678888889999988876443333 3455666665544321110 0000000 111
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh--hhHHHHhcCCccchhhHhhcCC
Q psy12605 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD--EQTQVILNCDALSHFPALLTHP 337 (845)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~i~~~~~l~~L~~lL~~~ 337 (845)
+..- +....+-....+..++.=+.+.++..+..++.++..+...-+ +. ..-.+...+..++..+.+.
T Consensus 703 ~ttv----------~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di-derleE~lidgil~Afqeq 771 (1172)
T KOG0213|consen 703 DTTV----------EIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI-DERLEERLIDGILYAFQEQ 771 (1172)
T ss_pred HHHH----------HHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHhc
Confidence 1111 111222233445666666777777777777666666543211 11 0111123445555555443
Q ss_pred c--hhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH--hHHHHHH
Q psy12605 338 K--EKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--QTQEVVA 412 (845)
Q Consensus 338 ~--~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~ 412 (845)
+ ..+--....++.+-... ..... ..++..++..|++ .++.++..|+..++.++.--.. .-+.+-.
T Consensus 772 tt~d~vml~gfg~V~~~lg~r~kpyl-----pqi~stiL~rLnn-----ksa~vRqqaadlis~la~Vlktc~ee~~m~~ 841 (1172)
T KOG0213|consen 772 TTEDSVMLLGFGTVVNALGGRVKPYL-----PQICSTILWRLNN-----KSAKVRQQAADLISSLAKVLKTCGEEKLMGH 841 (1172)
T ss_pred ccchhhhhhhHHHHHHHHhhccccch-----HHHHHHHHHHhcC-----CChhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 2 22333444444432111 01111 1133445556666 4789999999999888641111 1112222
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC------ChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 413 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD------GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 413 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~------~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
.--.|.+.|....+++....+.+|..|... .+.. .+.++.|.-+|++.. .+++++++..++.+|.
T Consensus 842 --lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi------~dllPrltPILknrh-eKVqen~IdLvg~Iad 912 (1172)
T KOG0213|consen 842 --LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI------KDLLPRLTPILKNRH-EKVQENCIDLVGTIAD 912 (1172)
T ss_pred --hhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh------hhhcccchHhhhhhH-HHHHHHHHHHHHHHHh
Confidence 223478889999999998888887776531 1211 356788888887654 4899999999999999
Q ss_pred CCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc-ccccc
Q psy12605 487 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ-KKQHS 563 (845)
Q Consensus 487 ~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~--l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~-~~~l~ 563 (845)
..+..........+.--|..+|.+...+++.++. +.|++.. +.-.+++..|+.-|+..+-...+. .-++.
T Consensus 913 rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIa 985 (1172)
T KOG0213|consen 913 RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIA 985 (1172)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhh
Confidence 7765556566666666667777777888887755 6666642 122244445555554432211110 00111
Q ss_pred ccccccCCChhhHHHHHhCCcccchHHhhc---CCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhh
Q psy12605 564 IYMCVSPGTDEQTQVILNCDALSHFPALLT---HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCK 640 (845)
Q Consensus 564 ~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 640 (845)
++ ---+|.+.+|-.++. .|+..|+..++.+++-+-....+.-...+ .-..|.|...
T Consensus 986 IV-------------aE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi-yav~PlleDA------- 1044 (1172)
T KOG0213|consen 986 IV-------------AETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI-YAVTPLLEDA------- 1044 (1172)
T ss_pred hh-------------hhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH-HHhhHHHHHh-------
Confidence 11 112455555555554 46677777777777765321110000000 0112222221
Q ss_pred hhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHH
Q psy12605 641 ILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAIS 720 (845)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 720 (845)
+.+.|+--|.-|+.++.
T Consensus 1045 ---------------------------------------------------------------lmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 1045 ---------------------------------------------------------------LMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred ---------------------------------------------------------------hccccHHHHHHHHHHHH
Confidence 25667777888888888
Q ss_pred hhcccCCHHHHHHHHHcCCchHHhhhhc-------cccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhh
Q psy12605 721 NLTISGNRDQVAKLVQEGVIPPFCDLLS-------CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQ 793 (845)
Q Consensus 721 ~l~~~~~~~~~~~l~~~~~i~~L~~~L~-------~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~ 793 (845)
+++.. .+ -.|....++.+|. +..+.++.+...++.-+-..-. -.-....+.+=+
T Consensus 1062 Hl~Lg-~~-------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg-----------~~~~~~Y~~QGL 1122 (1172)
T KOG0213|consen 1062 HLALG-VP-------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG-----------PQAMLKYCLQGL 1122 (1172)
T ss_pred HHhcC-CC-------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc-----------hHHHHHHHHHhc
Confidence 88733 11 1245555555554 3567777777777665543211 111223334446
Q ss_pred cCCCHHHHHHHHHHHHHhcCcc
Q psy12605 794 NHENVEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 794 ~~~~~~v~~~a~~~l~~~~~~~ 815 (845)
.|+...|++.--.+++..|-..
T Consensus 1123 FHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1123 FHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred cCcHHHHHHHHHHHHHhHhhcc
Confidence 7888888888777777665444
No 55
>KOG1059|consensus
Probab=98.84 E-value=3e-06 Score=92.63 Aligned_cols=398 Identities=16% Similarity=0.196 Sum_probs=245.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
..++ .++++.-|-++..|+..+.++.-.-++ ++ ...+|+|++-| .+++|.++..|..+++.||..+|.+--.
T Consensus 147 ~Dv~-tLL~sskpYvRKkAIl~lykvFLkYPe----Al--r~~FprL~EkL-eDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 147 DDVF-TLLNSSKPYVRKKAILLLYKVFLKYPE----AL--RPCFPRLVEKL-EDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHH-HHHhcCchHHHHHHHHHHHHHHHhhhH----hH--hhhHHHHHHhc-cCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 3555 889999999999998888877543322 22 23589999999 5788999999999999999988876543
Q ss_pred HHHcCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 127 VVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.-|.+.++|-++ +-=+-...+...++|+--.|..... .+++|.+++.+....++...++.++.......
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 568888887654 4456677788888888666665555 47899999988766777777776665443333
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+.........-++..|..++.+.|+. .+.-++.+++.+....+..++.. -
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqN-------------------------LKYlgLlam~KI~ktHp~~Vqa~-----k 338 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQN-------------------------LKYLGLLAMSKILKTHPKAVQAH-----K 338 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCcc-------------------------HHHHHHHHHHHHhhhCHHHHHHh-----H
Confidence 22344456677888888889999998 88888999988887665544332 3
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
+.++..|.+.+++++..|+..+.-++.. +.... ++..|+..+.. .....|.+.+.-+..+|+.+. .+.+.
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e------IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn--Y~~It 409 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVSK-KNLME------IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN--YQYIT 409 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh--hhhhh
Confidence 4678889999999999999999998754 22222 33445555533 334777777776666654322 22232
Q ss_pred hcC-ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-----------CCHHHHH
Q psy12605 365 DAG-LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-----------PHSNVCE 432 (845)
Q Consensus 365 ~~~-~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~v~~ 432 (845)
+-. .+..|+++.+-.+ .+.-...+.-+.+++-.-+..+.. .+..+..++.+ .-.+|..
T Consensus 410 dFEWYlsVlveLa~l~~-----~~~G~~I~eQi~Dv~iRV~~iR~f-----sV~~m~~Ll~~~~~~~s~q~n~~l~eVL~ 479 (877)
T KOG1059|consen 410 DFEWYLSVLVELARLEG-----TRHGSLIAEQIIDVAIRVPSIRPF-----SVSQMSALLDDPLLAGSAQINSQLCEVLY 479 (877)
T ss_pred hHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHheechhhhHh-----HHHHHHHHHhchhhccchhhccchhHHHH
Confidence 211 2344555544321 111111222233332211111111 12223333332 1357889
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc----CCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHh----HHHHH
Q psy12605 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI----KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE----LLPAL 504 (845)
Q Consensus 433 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll----~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~----~l~~l 504 (845)
+|+|++|..+....+..+ .+..+++-- ..+...-+..++...++++|....+...++.+.. .+..|
T Consensus 480 AaaWi~GEyse~ven~~~------~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l 553 (877)
T KOG1059|consen 480 AAAWILGEYSEFVENPND------TLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFL 553 (877)
T ss_pred HHHHHHHHHHHHhhCHHH------HHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHh
Confidence 999999999875443222 223333211 1111123455667788888887766555444433 33444
Q ss_pred HHhhcCCChhHHH
Q psy12605 505 NILIHHHDTSVSI 517 (845)
Q Consensus 505 ~~ll~~~d~~v~~ 517 (845)
-++..+.|-+|+.
T Consensus 554 ~qf~~s~d~EvQE 566 (877)
T KOG1059|consen 554 EQFSGSSDLEVQE 566 (877)
T ss_pred hcccCccchhHHH
Confidence 4555567777754
No 56
>KOG2160|consensus
Probab=98.84 E-value=2e-07 Score=95.17 Aligned_cols=183 Identities=16% Similarity=0.204 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
-+..|+.-|.++...-+ +...++..|+..+++.++.+++..+|..|+++|+.++..++..+..+++.|+++.|+..+++
T Consensus 99 ~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~ 177 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS 177 (342)
T ss_pred HHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc
Confidence 66788888888776533 44566788999999999999999999999999999999999999999999999999999976
Q ss_pred C-chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCC
Q psy12605 337 P-KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 415 (845)
Q Consensus 337 ~-~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~ 415 (845)
. +..+|..|+.+++.+..+.+.....+...++...|..++.+.+ .+..++..+...+..+...+......+...++
T Consensus 178 ~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 178 DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 4 5678899999999999999999999999999999999999864 57899999999999999888777777888889
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 416 VPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 416 i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
...+..+....+.++.+.++.++.....
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 9999999999999999999988876654
No 57
>KOG1062|consensus
Probab=98.74 E-value=8.1e-05 Score=83.02 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=161.0
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 212 (845)
...|.+=|++++.-++-.|+.+||+++.. +-.|+ ..|.+.+++++. +..+|+.|+.|...+.+..+ .
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i~s~-Emard------lapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P-----~ 175 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNICSP-EMARD------LAPEVERLLQHR-DPYIRKKAALCAVRFIRKVP-----D 175 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhccCCH-HHhHH------hhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCc-----h
Confidence 34455567778888888899999999732 22222 356677777775 45788888888888877552 2
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL 292 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 292 (845)
..+.+++...+++.+.+.. +...++..+..+...+++....+.+ .++-++..|
T Consensus 176 l~e~f~~~~~~lL~ek~hG-------------------------VL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iL 228 (866)
T KOG1062|consen 176 LVEHFVIAFRKLLCEKHHG-------------------------VLIAGLHLITELCKISPDALSYFRD--LVPSLVKIL 228 (866)
T ss_pred HHHHhhHHHHHHHhhcCCc-------------------------eeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHH
Confidence 3556777777777776666 4444444455555554444444422 344444444
Q ss_pred c---------------CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc------hhhHHHHHHHHHH
Q psy12605 293 S---------------HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK------EKICKEAVWFLSN 351 (845)
Q Consensus 293 ~---------------~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~------~~~~~~a~~~L~n 351 (845)
+ -++|-++...++.|+-+-.++.+....+- ..|-+.....+ ..+..++..++..
T Consensus 229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~ 303 (866)
T KOG1062|consen 229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMD 303 (866)
T ss_pred HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHh
Confidence 1 13455677777777766655444333322 12333332111 2233333333333
Q ss_pred hhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHH
Q psy12605 352 ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 431 (845)
Q Consensus 352 l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 431 (845)
+-.. ...+. -++..|-++|.+ .+..+|+-|...|......++...+.= =..+++.|++++..++
T Consensus 304 I~~~-~~Lrv-----lainiLgkFL~n-----~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIk 367 (866)
T KOG1062|consen 304 IRSN-SGLRV-----LAINILGKFLLN-----RDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIK 367 (866)
T ss_pred ccCC-chHHH-----HHHHHHHHHhcC-----CccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHH
Confidence 3111 11100 022333334433 244555555555555554444322211 1236788888999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCC
Q psy12605 432 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 490 (845)
Q Consensus 432 ~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~ 490 (845)
..|+..+..|.-.+ +++. .++.|+.+|... +.+++..++.-+..++....|
T Consensus 368 rralELs~~lvn~~-Nv~~------mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 368 RRALELSYALVNES-NVRV------MVKELLEFLESS-DEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHHhccc-cHHH------HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCC
Confidence 98888888777543 2332 356677777766 557777777777777665543
No 58
>KOG2759|consensus
Probab=98.74 E-value=4.8e-07 Score=93.41 Aligned_cols=297 Identities=14% Similarity=0.116 Sum_probs=194.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
.+.++ .++...|.-....+...+.++...+... ..-..-.=....|..+++++.+++....|+++|..+... ++.+.
T Consensus 116 ~~~fl-~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 116 WLSFL-NLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred hHHHH-HHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence 45666 6777777777776666666666554321 100000002444566666667778888999999999876 78999
Q ss_pred HHHHcCChHHHHHhhCC--CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 126 EVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
.++..+++..++..+.+ .+-.++.+.+.|++-+... +...+.+...+.|+.|..+++++..+.+.|.++.++.|++.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999953 3668899999999999965 44556667778999999999999888999999999999998
Q ss_pred CCCCCCCh------hHHhhHHHHHHhhccc---CCchh--hHHHHH-HHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC
Q psy12605 204 NKDPPPSM------STIIELLPALNILIHH---HDTSV--SIYLWL-SIIEKNPQISKILVSKMKILVDTVWALSYLTDG 271 (845)
Q Consensus 204 ~~~~~~~~------~~~~~~l~~L~~ll~~---~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 271 (845)
..+..... ....++.+.+ +.+.. .|+++ .+..+. .+-.... .+...+ ++......-.-..
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l-~~L~~rkysDEDL~~di~~L~e~L~~svq---~LsSFD----eY~sEl~sG~L~W 343 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTL-QSLEERKYSDEDLVDDIEFLTEKLKNSVQ---DLSSFD----EYKSELRSGRLEW 343 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHH---hhccHH----HHHHHHHhCCcCC
Confidence 76322221 1122333333 33332 34431 011110 0000000 000000 0000000000000
Q ss_pred C---------hhhHHHHHhc--CchhhHHhhccCC-chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 272 G---------NDQIQMVIDS--GVVPSLIPLLSHK-EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 272 ~---------~~~~~~~~~~--g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
+ .++...+-+. .++..|+.+|+.. ++.+...|+.=|+..+...+..+..+.+.|+-..++++++++|+
T Consensus 344 SP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDP 423 (442)
T ss_pred CccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCc
Confidence 0 1233333332 4678899999655 58888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhc
Q psy12605 340 KICKEAVWFLSNITA 354 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~ 354 (845)
++|.+|+.++..+..
T Consensus 424 ~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 424 EVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999998887643
No 59
>KOG1060|consensus
Probab=98.70 E-value=2.8e-05 Score=86.12 Aligned_cols=288 Identities=13% Similarity=0.140 Sum_probs=176.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
-..+. ++|+++....+..|+.-+..+...+++ + +.++|..|+.. .+.+.++++..-.-|...|..+++...
T Consensus 37 ~~dL~-~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNV-askn~EVKkLVyvYLlrYAEeqpdLAL 107 (968)
T KOG1060|consen 37 HDDLK-QLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNV-ASKNIEVKKLVYVYLLRYAEEQPDLAL 107 (968)
T ss_pred hHHHH-HHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHh-hccCHHHHHHHHHHHHHHhhcCCCcee
Confidence 44677 899999999999999999988887765 2 34689999999 578899999998888888876554332
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
. -|..+-+-|+++++.+|..|+++|..|=-. ..... ++-.+-++.... ..-+|..|+.++-.+-.-.
T Consensus 108 L-----SIntfQk~L~DpN~LiRasALRvlSsIRvp--~IaPI-----~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 108 L-----SINTFQKALKDPNQLIRASALRVLSSIRVP--MIAPI-----MLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred e-----eHHHHHhhhcCCcHHHHHHHHHHHHhcchh--hHHHH-----HHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCC
Confidence 2 577888899999999999999999876321 11110 011122233333 5589999999998887654
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
. ......+..+-.++.+.++- +.-.|+.+.-.++ +++.+.+ .+-.
T Consensus 175 ~-----e~k~qL~e~I~~LLaD~spl-------------------------VvgsAv~AF~evC---PerldLI--Hkny 219 (968)
T KOG1060|consen 175 P-----EQKDQLEEVIKKLLADRSPL-------------------------VVGSAVMAFEEVC---PERLDLI--HKNY 219 (968)
T ss_pred h-----hhHHHHHHHHHHHhcCCCCc-------------------------chhHHHHHHHHhc---hhHHHHh--hHHH
Confidence 2 22346677777788888887 4444444443332 3333333 2334
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCC---hhhHHHHhc-CC------------------------ccchhhHhhcCC
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGT---DEQTQVILN-CD------------------------ALSHFPALLTHP 337 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~---~~~~~~i~~-~~------------------------~l~~L~~lL~~~ 337 (845)
..+..+|.+-++--|...++.|..-+... +.......+ .| .+...-.++.+.
T Consensus 220 rklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~ 299 (968)
T KOG1060|consen 220 RKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR 299 (968)
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence 55555655544444555555554443211 100000000 00 122333345566
Q ss_pred chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 338 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 338 ~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
++.+..+++.+...++.... ...++.+|+++|+. ++.+|.-....+..++...
T Consensus 300 n~sVVmA~aql~y~lAP~~~-------~~~i~kaLvrLLrs------~~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQ-------VTKIAKALVRLLRS------NREVQYVVLQNIATISIKR 352 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHH-------HHHHHHHHHHHHhc------CCcchhhhHHHHHHHHhcc
Confidence 77777777777777744321 12346778888876 4566666666666555443
No 60
>KOG0213|consensus
Probab=98.70 E-value=1.7e-05 Score=86.86 Aligned_cols=424 Identities=13% Similarity=0.106 Sum_probs=219.1
Q ss_pred ChHHHHHhhC----CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc----CCCCHHHHHHHHHHHHHhhc
Q psy12605 132 AVPLFLRLLM----SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK----PDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 132 ~i~~L~~lL~----s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~----~~~~~~~~~~a~~~L~~l~~ 203 (845)
++...+.-+. +.++-++....++.+-.++. =++|.|+.+|+ +..+-+-|...+.+...+|.
T Consensus 473 Gla~mistmrpDidn~deYVRnttarafavvasa-----------lgip~llpfLkavc~SkkSwqaRhTgIkivqqIai 541 (1172)
T KOG0213|consen 473 GLATMISTMRPDIDNKDEYVRNTTARAFAVVASA-----------LGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAI 541 (1172)
T ss_pred hhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHH-----------hCcHHHHHHHHHHhccccchhhhchhhHHHHHHHH
Confidence 4444444443 34677888888877776632 13555555552 22233455566666666665
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh-hHHHHHhc
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND-QIQMVIDS 282 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~ 282 (845)
-.. +..+....+.+..+-+.+.++... ++..++.+++++++...- .++.+ .
T Consensus 542 l~G-csvlphl~~lv~ii~~gl~De~qk-------------------------VR~itAlalsalaeaa~Pygie~f--D 593 (1172)
T KOG0213|consen 542 LSG-CSVLPHLKPLVKIIEHGLKDEQQK-------------------------VRTITALALSALAEAATPYGIEQF--D 593 (1172)
T ss_pred Hhc-chhhhhhHHHHHHHHHhhcccchh-------------------------hhhHHHHHHHHHHHhcCCcchHHH--H
Confidence 432 222334445555555555555555 778888888888765332 22222 1
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
.++.+|.+-+.........+-+++++.++-..+..........++-.++.=..++|++.++..+.++..+|...... ..
T Consensus 594 sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~ 672 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PA 672 (1172)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HH
Confidence 34455555555555566777788999988655544444444445566777778899999999999999987653221 33
Q ss_pred HHhcCChHHHHHHhhhcc-cc-cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 363 VIDAGLLPKIIANLQKVG-RI-VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~-~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
.+..+++|.++...-... .. ..+..........+++ ++-....+..++.=+.++.+..|.-++.+..+
T Consensus 673 y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~----------KvG~~~~v~R~v~~lkde~e~yrkm~~etv~r 742 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA----------KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSR 742 (1172)
T ss_pred HHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH----------HhCchHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 345566666665443210 00 0011111111111111 11111234445555667777666666655555
Q ss_pred hhcCChH-HHHHHHhCCChHHHHhccCCC-CChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH
Q psy12605 441 IIGDGPQ-LRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518 (845)
Q Consensus 441 l~~~~~~-~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~ 518 (845)
+...-.. --+.-...-.+..++..+..+ ....+.-.+..++.|=.-+. .......++..+.+.|++..+.++..
T Consensus 743 i~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r----~kpylpqi~stiL~rLnnksa~vRqq 818 (1172)
T KOG0213|consen 743 IVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR----VKPYLPQICSTILWRLNNKSAKVRQQ 818 (1172)
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc----cccchHHHHHHHHHHhcCCChhHHHH
Confidence 4431100 000111222334444444433 23344445555555433221 01234556777777888777777654
Q ss_pred HH--HHhhhcCch--hhHHHHhhhhhhHHHHhhhccCCCCcccccccccc---cccccCCChhhHHHHHhCCcccchHHh
Q psy12605 519 LW--LSIIEKNPQ--ISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI---YMCVSPGTDEQTQVILNCDALSHFPAL 591 (845)
Q Consensus 519 ~~--l~~l~~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~---l~nl~~~~~~~~~~l~~~~~l~~L~~l 591 (845)
+. .+.+..--. ....++.+.|++ |.++|....+.+. ...+.+ +.|...-+.. .-=-.+++|.|..+
T Consensus 819 aadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvL--gsILgAikaI~nvigm~km---~pPi~dllPrltPI 891 (1172)
T KOG0213|consen 819 AADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVL--GSILGAIKAIVNVIGMTKM---TPPIKDLLPRLTPI 891 (1172)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHH--HHHHHHHHHHHHhcccccc---CCChhhhcccchHh
Confidence 32 222221000 001122222322 4455554433321 112222 2222100000 00013789999999
Q ss_pred hcCCChhHHHHHHHHHhhhccCCHH
Q psy12605 592 LTHPKEKICKEAVWFLSNITAGNQA 616 (845)
Q Consensus 592 l~~~~~~v~~~a~~~Lsnl~~~~~~ 616 (845)
|++.+..|+..+...++.|+...++
T Consensus 892 LknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 892 LKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999976654
No 61
>KOG1062|consensus
Probab=98.69 E-value=6.2e-06 Score=91.58 Aligned_cols=368 Identities=12% Similarity=0.149 Sum_probs=229.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
|++. ++++..++-.+.+|+.+..++....++ ..+. +++.-.++| .+.+..+-..++..+..+|..+++....
T Consensus 145 peVe-~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e~-----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 145 PEVE-RLLQHRDPYIRKKAALCAVRFIRKVPD-LVEH-----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred HHHH-HHHhCCCHHHHHHHHHHHHHHHHcCch-HHHH-----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence 4444 788999999999999999888775543 2233 477778888 4667788888999999999988877776
Q ss_pred HHHcCChHHHHHhhCC---------------CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC-----CC
Q psy12605 127 VVAAGAVPLFLRLLMS---------------PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP-----DI 186 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s---------------~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~-----~~ 186 (845)
+.+ .++.|+..|+. ++|-+|...++.|+-+...+++..+.+.+ .|-+...+ +.
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence 666 77777777642 36789999999999999888777666543 22233321 11
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH
Q psy12605 187 PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266 (845)
Q Consensus 187 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~ 266 (845)
-..+...++.++..+-.+. ....-++..|-+.+.+.|.. ++.-++.+|.
T Consensus 290 GnAILYE~V~TI~~I~~~~------~LrvlainiLgkFL~n~d~N-------------------------irYvaLn~L~ 338 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNS------GLRVLAINILGKFLLNRDNN-------------------------IRYVALNMLL 338 (866)
T ss_pred hhHHHHHHHHHHHhccCCc------hHHHHHHHHHHHHhcCCccc-------------------------eeeeehhhHH
Confidence 2356666666666554333 23455667777777777766 6777777777
Q ss_pred HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHH
Q psy12605 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV 346 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~ 346 (845)
+....+++..+.- =..+++.|++++..++..|++.+..++..+ +... .+..++..|.+.+++.+....
T Consensus 339 r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 339 RVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESSDEDFKADIA 406 (866)
T ss_pred hhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhccHHHHHHHH
Confidence 7766655543332 134677778888888888888888776432 1121 345577777766777777766
Q ss_pred HHHHHhhcCChH----HHHH----------HHhcCChHHHHHHhhhcccc--------------------cCChhHHHHH
Q psy12605 347 WFLSNITAGNQA----QVQA----------VIDAGLLPKIIANLQKVGRI--------------------VLRPNLQFEA 392 (845)
Q Consensus 347 ~~L~nl~~~~~~----~~~~----------l~~~~~i~~Lv~lL~~~~~~--------------------~~~~~v~~~a 392 (845)
.-+..++..-.+ .++. ++..+++..++.++.+..+- -+.+.+...|
T Consensus 407 s~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa 486 (866)
T KOG1062|consen 407 SKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVA 486 (866)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 666655432111 1111 12223455566665544110 0244556778
Q ss_pred HHHHHHHh----cC-ChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc
Q psy12605 393 AWALTNIA----SG-TSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 465 (845)
Q Consensus 393 ~~~L~~l~----~~-~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll 465 (845)
.|+++.-. .+ +.+.-..+.+..++..+..++.+ .+..++..|+.+|..++..-... ..-++.++.-+
T Consensus 487 ~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~------~~ri~~lI~~~ 560 (866)
T KOG1062|consen 487 SWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS------SERIKQLISSY 560 (866)
T ss_pred HHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc------HHHHHHHHHHh
Confidence 88888743 11 12222234445667778777764 45778899999999998643222 11234455555
Q ss_pred CCCCChhHHHHHH
Q psy12605 466 KPDIPISFLRNVT 478 (845)
Q Consensus 466 ~~~~~~~~~~~~~ 478 (845)
...-+.+++..+.
T Consensus 561 ~~s~~~elQQRa~ 573 (866)
T KOG1062|consen 561 KSSLDTELQQRAV 573 (866)
T ss_pred cccccHHHHHHHH
Confidence 5555556655543
No 62
>KOG2759|consensus
Probab=98.68 E-value=9.6e-06 Score=84.03 Aligned_cols=321 Identities=12% Similarity=0.135 Sum_probs=212.3
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH------cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA------AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~------~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.+..++.+++....++....++..+..+-+.+......+-+ .-..++.+.+|...+.-+.+.+.+++..++..+
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 46677777765555666666666666665543333222211 234788999999999999999999999988665
Q ss_pred hhhH---HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc--CCchhhHHHH
Q psy12605 163 PQLR---DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH--HDTSVSIYLW 237 (845)
Q Consensus 163 ~~~r---~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~ 237 (845)
...- +.-+. ...|-..+++..+......++.||..+.+-++....+. ....+..++..+.+ .+-+
T Consensus 146 ~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v-~adg~~~l~~~l~s~~~~~Q------ 215 (442)
T KOG2759|consen 146 NCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV-IADGVSLLIRILASTKCGFQ------ 215 (442)
T ss_pred cccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee-ecCcchhhHHHHhccCcchh------
Confidence 4221 11111 23344555555556788889999999998875544443 33444555555432 2333
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCCh-
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTD- 315 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~- 315 (845)
++...+.|+.-|+..+ ...+.+..-+.++.|...+++ ..++|..-.+.++.|+....+
T Consensus 216 -------------------lQYqsifciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 216 -------------------LQYQSIFCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred -------------------HHHHHHHHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 6666666666666543 344666667999999999954 578899999999999987663
Q ss_pred -----hhHHHHhcCCccchhhHhhcC--CchhhHHHHHHHHHHh-------hcC--------------C---------hH
Q psy12605 316 -----EQTQVILNCDALSHFPALLTH--PKEKICKEAVWFLSNI-------TAG--------------N---------QA 358 (845)
Q Consensus 316 -----~~~~~i~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~nl-------~~~--------------~---------~~ 358 (845)
.....++.+++.+.+-.+-.. .|+++....-..-..+ +.- + .+
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 334556666655544444432 3555544332222211 110 0 11
Q ss_pred HHHHHHh--cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHH
Q psy12605 359 QVQAVID--AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVW 436 (845)
Q Consensus 359 ~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~ 436 (845)
+...+.+ -.++..|+++|... .+|.+-.-||.=++..+.+.|+....+.+.|+=+.+.+++++++++|+..|+.
T Consensus 356 Na~rlnennyellkiL~~lLe~s----~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETS----NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALL 431 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcC----CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHH
Confidence 1122222 12688999999886 47888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy12605 437 ALGNIIG 443 (845)
Q Consensus 437 ~L~nl~~ 443 (845)
|+-.+..
T Consensus 432 avQ~lm~ 438 (442)
T KOG2759|consen 432 AVQKLMV 438 (442)
T ss_pred HHHHHHh
Confidence 8876643
No 63
>KOG4413|consensus
Probab=98.63 E-value=1.7e-05 Score=78.89 Aligned_cols=377 Identities=12% Similarity=0.132 Sum_probs=233.2
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccH---HHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPI---EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV 128 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~ 128 (845)
..|..+|..++..+...+..++.......+ ..++++|+.+.++.++. ..+.++-..|...+..++.. +.....++
T Consensus 89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrialf-paaleaiF 166 (524)
T KOG4413|consen 89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIALF-PAALEAIF 166 (524)
T ss_pred hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhc-HHHHHHhc
Confidence 577788999999999999998876542222 44558999999999994 56678999999999999865 77777888
Q ss_pred HcCChHHH--HHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 129 AAGAVPLF--LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 129 ~~g~i~~L--~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
+.+....+ ..+--..+.-.|...+..+-.|.+-+++........|.+..|..-+....+.-++.+++.....+....
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete- 245 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE- 245 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-
Confidence 77766554 333334455678888888999998899888888899999988888876556667777888888887655
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchh--hHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh--cCChhhHHHHHhc
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSV--SIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT--DGGNDQIQMVIDS 282 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~ 282 (845)
....+....+.+..+...+...|.+. ..+++. .....+.+.+ +...+ .+++.
T Consensus 246 HgreflaQeglIdlicnIIsGadsdPfekfralm---------------------gfgkffgkeaimdvsee---aicea 301 (524)
T KOG4413|consen 246 HGREFLAQEGLIDLICNIISGADSDPFEKFRALM---------------------GFGKFFGKEAIMDVSEE---AICEA 301 (524)
T ss_pred hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHH---------------------HHHHHhcchHHhhcCHH---HHHHH
Confidence 34556667889999998887655541 111110 0000011100 00010 11110
Q ss_pred --CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc--cchhhHhhcCC-chhhHHHHHHHHHHhhcCCh
Q psy12605 283 --GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA--LSHFPALLTHP-KEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 283 --g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~--l~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~ 357 (845)
-.+....+++...++..+..|+.++|-+-+. .+..+.+.+.|- ...++.-..+. ...-+..+..+|.+++....
T Consensus 302 liiaidgsfEmiEmnDpdaieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 302 LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcccc
Confidence 1233445566778899999999999988544 344555555542 22333222222 23344556677777744321
Q ss_pred HHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHH
Q psy12605 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA 437 (845)
Q Consensus 358 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 437 (845)
..-..+.+.. ...+.... .+...+.. ....-...+...++.+.++++..+..+
T Consensus 381 lkpeqitDgk------------------aeerlrcl-ifdaaaqs--------tkldPleLFlgilqQpfpEihcAalkt 433 (524)
T KOG4413|consen 381 LKPEQITDGK------------------AEERLRCL-IFDAAAQS--------TKLDPLELFLGILQQPFPEIHCAALKT 433 (524)
T ss_pred CChhhccccH------------------HHHHHHHH-HHHHHhhc--------cCCChHHHHHHHHcCCChhhHHHHHHH
Confidence 1111111100 11111111 11111111 112345668888999999999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCC--hhHHHHHHHHHHH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP--ISFLRNVTWVIVN 483 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~--~~~~~~~~~~l~n 483 (845)
+..++......+..+...|.+..+++--..+.. .+-+-.++.++.+
T Consensus 434 fTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 434 FTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 999998877677777777777776665443322 3334455555543
No 64
>KOG1789|consensus
Probab=98.60 E-value=0.00091 Score=76.35 Aligned_cols=594 Identities=16% Similarity=0.168 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CCh--hHHHHHHHHHHHHhcCChhhHHHHHH-
Q psy12605 63 LLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRP--NLQFEAAWALTNIASGTSAQTQEVVA- 129 (845)
Q Consensus 63 ~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~--~i~~~a~~~L~~la~~~~~~~~~i~~- 129 (845)
+.|+..|..+-.....-+.+++...|++..|...+++. +++ .+....+.++.-.+.. ++.+..+.+
T Consensus 1402 L~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQF-E~cR~~~~Em 1480 (2235)
T KOG1789|consen 1402 LSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQF-EACRQRLMEM 1480 (2235)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHH-HHHHHHHhhh
Confidence 44555555443333345678999999999999988543 222 3445566666666653 566666776
Q ss_pred cCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC--------------CCC-----HH
Q psy12605 130 AGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP--------------DIP-----IS 189 (845)
Q Consensus 130 ~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~--------------~~~-----~~ 189 (845)
...|.-|+.++.= .-+.+...++.++...+-+ +..+..+.++|++=.++.+|-+ +.+ .+
T Consensus 1481 PSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd-~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNs 1559 (2235)
T KOG1789|consen 1481 PSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVD-TLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANS 1559 (2235)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHhhh-HHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHH
Confidence 4677778887763 3678889999999999954 6789999999998888877621 111 23
Q ss_pred HHHHHHHHHHHhhcCC---CCCCChh----HHhh-HHHHHHhhcccCCchhhHHHHHHHhhhChhhH-------Hh--hh
Q psy12605 190 FLRNVTWVIVNLCRNK---DPPPSMS----TIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQIS-------KI--LV 252 (845)
Q Consensus 190 ~~~~a~~~L~~l~~~~---~~~~~~~----~~~~-~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~-------~~--~~ 252 (845)
..+.++.+|+.|.... ..-+... ...+ .-|.+.+.++.+..+--++ ..+-.-.+|.+- .+ |.
T Consensus 1560 lA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk-~LNsN~E~Py~IWNn~TRaELLeFv 1638 (2235)
T KOG1789|consen 1560 LARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLK-TLNSNMENPYMIWNNGTRAELLEFV 1638 (2235)
T ss_pred HHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHH-HhhcCCCCceeeecCccHHHHHHHH
Confidence 4445666676665432 1111111 1111 2244444443322110000 000011112110 00 01
Q ss_pred hh----------------------------------------------HHHHHHHHHHHHHhhcCChhhHHHHHhcCch-
Q psy12605 253 SK----------------------------------------------MKILVDTVWALSYLTDGGNDQIQMVIDSGVV- 285 (845)
Q Consensus 253 ~~----------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i- 285 (845)
+. .+-..-|...|.|+..+........ +...+
T Consensus 1639 e~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~-~~~~~s 1717 (2235)
T KOG1789|consen 1639 ERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAP-KPKAIS 1717 (2235)
T ss_pred HHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCC-Cccccc
Confidence 00 0000011111112111100000000 00000
Q ss_pred hhHHhh---c---cC----CchhhHHHHHHHHHHHhcCChhhHHHHhcC----CccchhhHhhc-CCchhhHHHHHHHHH
Q psy12605 286 PSLIPL---L---SH----KEVKVQTASLRAVGNIVTGTDEQTQVILNC----DALSHFPALLT-HPKEKICKEAVWFLS 350 (845)
Q Consensus 286 ~~Lv~l---L---~~----~~~~v~~~al~~L~nl~~~~~~~~~~i~~~----~~l~~L~~lL~-~~~~~~~~~a~~~L~ 350 (845)
.-++.+ . .+ +.+.-...++.+|.|+...+++....+-.. |.++.+...+. ++++.++.-|+.++.
T Consensus 1718 ~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~ 1797 (2235)
T KOG1789|consen 1718 DDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL 1797 (2235)
T ss_pred cchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH
Confidence 000000 0 00 122345678999999998887655444322 66677777774 467889999999888
Q ss_pred HhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh-CCCCHH
Q psy12605 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL-MSPHSN 429 (845)
Q Consensus 351 nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~ 429 (845)
-+.+. .++...+.+.+.+..|+.+|.+ -|..+..+...|..+++. ++..+...++|++..+..++ .+.++.
T Consensus 1798 ~~Tan-~~Cv~~~a~~~vL~~LL~lLHS------~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~Q 1869 (2235)
T KOG1789|consen 1798 LATAN-KECVTDLATCNVLTTLLTLLHS------QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQ 1869 (2235)
T ss_pred HHhcc-cHHHHHHHhhhHHHHHHHHHhc------ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHH
Confidence 77554 5667888889999999999976 478888888888888765 46777788888887777666 566788
Q ss_pred HHHHHHHHHHHhhcC---ChHHHHHH-----------HhCCChHHHHhccCCCC-C------hhHHHHHHHHH----HHh
Q psy12605 430 VCEQAVWALGNIIGD---GPQLRDYV-----------INMGVVPPLLSFIKPDI-P------ISFLRNVTWVI----VNL 484 (845)
Q Consensus 430 v~~~a~~~L~nl~~~---~~~~~~~l-----------~~~g~l~~L~~ll~~~~-~------~~~~~~~~~~l----~nL 484 (845)
.|.+++..++.+..+ +|.++-.+ ++.|- +..++.++... + ..........+ +.+
T Consensus 1870 qRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~ 1948 (2235)
T KOG1789|consen 1870 QRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKL 1948 (2235)
T ss_pred HHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHH
Confidence 999999999999864 23222111 11122 45555554322 1 11111122222 222
Q ss_pred hcCC--CCCCChhHHHhHHHHHHHhhcCCChhHHHH-HHH-HhhhcCch----hhHHHHhhhhhhHHHHhhhccCCCCcc
Q psy12605 485 CRNK--DPPPSMSTIIELLPALNILIHHHDTSVSIY-LWL-SIIEKNPQ----ISKILVSKMKVCSRYLYYLSHNSGPMS 556 (845)
Q Consensus 485 ~~~~--~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~l-~~l~~~~~----~~~~~~~~~~~~~~L~~ll~~~~~~~~ 556 (845)
.+.. .|......-++.. .....+.+.... .++ .|+.+ |. ..+.+. .+.++.+++++..++....
T Consensus 1949 y~~QQk~p~~~W~~PEqsA-----g~~Ea~~E~aVGG~~~R~Fi~~-P~f~LR~Pk~FL--~~LLek~lelm~~~~peqh 2020 (2235)
T KOG1789|consen 1949 YEQQQKDPTVKWNTPEQSA-----GTSEADKECAVGGSINREFVVG-PGFNLRHPKLFL--TELLEKVLELMSRPTPEQH 2020 (2235)
T ss_pred HHHhccCCcccccCchhhc-----chhhhccCcccchhhhHHHhhC-CCCcccCHHHHH--HHHHHHHHHHhcCCCcccc
Confidence 2211 1111100000000 000001110000 011 11111 11 111121 2667777888876665543
Q ss_pred cccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 557 CQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 557 ~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
...-...++-++....+.....+-..|.+|.++.-+...+..+-+.|.++|-.++.+ +-..+.+.....+..++..+.+
T Consensus 2021 ~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK 2099 (2235)
T KOG1789|consen 2021 ELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK 2099 (2235)
T ss_pred hhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh
Confidence 322222233344444555556667778899999888888877778899999888764 3344555544444445554421
Q ss_pred hhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHH
Q psy12605 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716 (845)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 716 (845)
. +..---|+
T Consensus 2100 ~-----------------------------------------------------------------------~~~~GLA~ 2108 (2235)
T KOG1789|consen 2100 Q-----------------------------------------------------------------------PSLMGLAA 2108 (2235)
T ss_pred c-----------------------------------------------------------------------chHHHHHH
Confidence 0 11222466
Q ss_pred HHHHhhcccCCHHHHHHHHHcCCchHHhhhhcc
Q psy12605 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSC 749 (845)
Q Consensus 717 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~ 749 (845)
.++..+......+-....++.|.++.|.++|++
T Consensus 2109 EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2109 EALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 677776644455666777789999999999986
No 65
>KOG1789|consensus
Probab=98.56 E-value=0.00012 Score=83.15 Aligned_cols=353 Identities=17% Similarity=0.227 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHcCCCCcc---HHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH
Q psy12605 61 LQLLAVQSARKLLSSDKNPP---IEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137 (845)
Q Consensus 61 ~~~~a~~~l~~ll~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~ 137 (845)
..+.++.+|+++++.+++-. .....--|.++.+..+|....++.++..|+.++..+.. +.+....+++.|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 45678999999998765311 12233347899999999777888999999999988876 478889999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh-hHHhh
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM-STIIE 216 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~ 216 (845)
.+|.+. +..|+.++.+|..+++. ++......+.|++..+..++-..++...|.+++..+..+..+.-..+.. .....
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 998764 78899999999999954 5677777888999888888877767788999999999998765322211 11112
Q ss_pred HHHH-H-----------Hhhccc--CCchhhHHHH-HHH-hhhChhhHHhhhhhHHHHH---HHHHHHH-----------
Q psy12605 217 LLPA-L-----------NILIHH--HDTSVSIYLW-LSI-IEKNPQISKILVSKMKILV---DTVWALS----------- 266 (845)
Q Consensus 217 ~l~~-L-----------~~ll~~--~~~~~~~~~~-~~l-~~~~~~~~~~~~~~~~~~~---~a~~~L~----------- 266 (845)
.+|. + ++++.. ++|+. .| .+. ...+-.|..-..+.-+-++ .+-|-+-
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPEL---iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPEL---IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCccc---ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 2222 2 233322 22221 00 000 0000000000000000000 0000000
Q ss_pred HhhcCChhhHHHHHhc------------CchhhHHhhccCCch--hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhH
Q psy12605 267 YLTDGGNDQIQMVIDS------------GVVPSLIPLLSHKEV--KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA 332 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~------------g~i~~Lv~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~ 332 (845)
.++-+..-.+..+.+. +.++.+.+++..+++ .....-..++-.+....+.....+-..|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 0000011111122221 345666666644332 22222233344444555677777778899999999
Q ss_pred hhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHH
Q psy12605 333 LLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVV 411 (845)
Q Consensus 333 lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~ 411 (845)
.+...+..+-..|..+|-.++.+ ..+.+.+.....+..++..++.. +...--|+.++..+.. ...+......
T Consensus 2055 Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~------~~~~GLA~EalkR~~~r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ------PSLMGLAAEALKRLMKRNTGELVAQML 2127 (2235)
T ss_pred HHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc------chHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 99887777778888999998655 45557777777777788888763 4555678888888764 5566777888
Q ss_pred HcCChHHHHHhhCCC
Q psy12605 412 AAGAVPLFLRLLMSP 426 (845)
Q Consensus 412 ~~g~i~~Lv~lL~~~ 426 (845)
+.|.++.|+++|+..
T Consensus 2128 K~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2128 KCGLVPYLLQLLDSS 2142 (2235)
T ss_pred ccCcHHHHHHHhccc
Confidence 899999999999864
No 66
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.55 E-value=2.3e-06 Score=91.02 Aligned_cols=228 Identities=14% Similarity=0.190 Sum_probs=156.0
Q ss_pred ChhhHHhhhcCC-CCHHHHHHHHHHHHHhhcCCCCCCChhHH------hhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 174 VVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTI------IELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 174 ~i~~Lv~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
....++.+++.- .+.++.+.+...+..++...+........ ......+.+++.++|.-
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~--------------- 120 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSF--------------- 120 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHH---------------
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHH---------------
Confidence 355566666554 56789999999999999887543333222 11345566677777777
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC----CchhhHHHHHHHHHHHhcCChhhHHHHh
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH----KEVKVQTASLRAVGNIVTGTDEQTQVIL 322 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~i~ 322 (845)
+...++..|..+....+...... ..+.++.++.++.+ ++..++..++.+|.++... +..+..+.
T Consensus 121 ----------i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~ 188 (312)
T PF03224_consen 121 ----------IQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFW 188 (312)
T ss_dssp ----------HHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHH
Confidence 88889999998887765543332 24667777777754 4556789999999999754 77889999
Q ss_pred cCCccchhhHhh------cC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 323 NCDALSHFPALL------TH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 323 ~~~~l~~L~~lL------~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
+.++++.+..++ .+ .+..+..+++.+++-++. +++..+.+...++++.|+++++.. ....+.+-+..+
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~----~KEKvvRv~la~ 263 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDS----IKEKVVRVSLAI 263 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH------SHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhc----ccchHHHHHHHH
Confidence 999999999999 22 357888999999999954 466678888888999999999987 578999999999
Q ss_pred HHHHhcCChH-hHHHHHHcCChHHHHHhhCC--CCHHHHHH
Q psy12605 396 LTNIASGTSA-QTQEVVAAGAVPLFLRLLMS--PHSNVCEQ 433 (845)
Q Consensus 396 L~~l~~~~~~-~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~ 433 (845)
+.|++...+. ....++..|+++.+-.+... +|+++.+.
T Consensus 264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 9999986654 67777777777776666654 46666653
No 67
>KOG1061|consensus
Probab=98.54 E-value=0.00023 Score=79.61 Aligned_cols=381 Identities=13% Similarity=0.136 Sum_probs=228.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
-+++++ ......|.+.+...-..+.......++ . ..+.++.++.=. .+.+|.+|..|.+.++.+--+ +..
T Consensus 50 lF~dvv-k~~~T~dlelKKlvyLYl~nYa~~~P~---~---a~~avnt~~kD~-~d~np~iR~lAlrtm~~l~v~--~i~ 119 (734)
T KOG1061|consen 50 LFPDVV-KCMQTRDLELKKLVYLYLMNYAKGKPD---L---AILAVNTFLKDC-EDPNPLIRALALRTMGCLRVD--KIT 119 (734)
T ss_pred hhHHHH-hhcccCCchHHHHHHHHHHHhhccCch---H---HHhhhhhhhccC-CCCCHHHHHHHhhceeeEeeh--HHH
Confidence 366777 677777776665555666655444322 1 123455656555 457889999888877766432 222
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
. ..+.++.+.+++.++.+|..++-+..++-..+ .+...+.|.++.|.+++..+++ .+..+|+.+|..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p-~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNP-MVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCc-hHHHHHHHHHHHHHHh
Confidence 2 26789999999999999999999999987443 4566788999999999985544 7899999999999887
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
.............+..+...+...+.. -+...+.++.+-.-.++ .+. ..+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW-------------------------~qi~IL~~l~~y~p~d~--~ea---~~i 240 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEW-------------------------GQIFILDCLAEYVPKDS--REA---EDI 240 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhh-------------------------hHHHHHHHHHhcCCCCc--hhH---HHH
Confidence 743232223334444444444444444 22222233322111111 111 134
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH---
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ--- 361 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~--- 361 (845)
+..+.+.|.+.++.+...+...+..+...-..... ..-...-+.++.++++.. +++--++.-+.-+..+.+....
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~ 318 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEI 318 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHh
Confidence 66777888888888888888888877654333222 222245566777776654 4443333222222222111100
Q ss_pred ----------------------HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHH
Q psy12605 362 ----------------------AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419 (845)
Q Consensus 362 ----------------------~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L 419 (845)
.+....-++.++.-+.... ...+.+.-.++.+++++++..-.+. +++++.|
T Consensus 319 ~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYa-tevD~~fvrkaIraig~~aik~e~~------~~cv~~l 391 (734)
T KOG1061|consen 319 KVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYA-TEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSIL 391 (734)
T ss_pred HeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhh-hhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHH
Confidence 0011111222221111110 0136677788999999987643322 6789999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 420 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+++++.....+...+...+..+....|..-+. ++..+..-+.+-++.+.+....|.++.-+..-
T Consensus 392 Lell~~~~~yvvqE~~vvi~dilRkyP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i 455 (734)
T KOG1061|consen 392 LELLETKVDYVVQEAIVVIRDILRKYPNKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAERI 455 (734)
T ss_pred HHHHhhcccceeeehhHHHHhhhhcCCCchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence 99999888888888888888888766654332 23444444455556788889999998766443
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.53 E-value=2.8e-06 Score=90.25 Aligned_cols=229 Identities=16% Similarity=0.235 Sum_probs=156.5
Q ss_pred hHHHHHhhC--CCChhHHHHHHHHHHHhcCCChhhHHHHHhc------CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 133 VPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQLRDYVINM------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 133 i~~L~~lL~--s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
...++.+|+ ++++++....+..+..+..+++...+.+... ....++++++.++ +..+...|+.+|..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHc
Confidence 445555554 4688999999999999998888777666542 2577888877776 778999999999999987
Q ss_pred CCCCCChhHHhhHHHHHHhhccc----CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy12605 205 KDPPPSMSTIIELLPALNILIHH----HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVI 280 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 280 (845)
.+..... ...+.++.++..+.+ .+.+ .+..++.+|..+.. .+..+..+.
T Consensus 136 ~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~-------------------------~~~~av~~L~~LL~-~~~~R~~f~ 188 (312)
T PF03224_consen 136 GPKRSEK-LVKEALPKLLQWLSSQLSSSDSE-------------------------LQYIAVQCLQNLLR-SKEYRQVFW 188 (312)
T ss_dssp TTT--HH-HHHHHHHHHHHHHH-TT-HHHH----------------------------HHHHHHHHHHHT-SHHHHHHHH
T ss_pred CCccccc-hHHHHHHHHHHHHHHhhcCCCcc-------------------------hHHHHHHHHHHHhC-cchhHHHHH
Confidence 7443332 225666777776654 2222 56778888998875 455677888
Q ss_pred hcCchhhHHhhc-----c--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHh
Q psy12605 281 DSGVVPSLIPLL-----S--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNI 352 (845)
Q Consensus 281 ~~g~i~~Lv~lL-----~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl 352 (845)
+.++++.+...+ . ..+..++..++-|+.-++.. +.....+.+.+.++.++++++. ..+.+.+-++.++.|+
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999999 2 23567888999999999766 5666778888899999999954 6789999999999999
Q ss_pred hcCChH-HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHH
Q psy12605 353 TAGNQA-QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAA 393 (845)
Q Consensus 353 ~~~~~~-~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~ 393 (845)
.....+ ....++..++++.+-.+..... .|+++....-
T Consensus 268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~---~Dedl~edl~ 306 (312)
T PF03224_consen 268 LSKAPKSNIELMVLCGLLKTLQNLSERKW---SDEDLTEDLE 306 (312)
T ss_dssp TSSSSTTHHHHHHHH-HHHHHHHHHSS-----SSHHHHHHHH
T ss_pred HhccHHHHHHHHHHccHHHHHHHHhcCCC---CCHHHHHHHH
Confidence 877664 6677777777666665555443 4666655443
No 69
>KOG1059|consensus
Probab=98.52 E-value=0.00018 Score=79.21 Aligned_cols=337 Identities=14% Similarity=0.163 Sum_probs=170.4
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
.+-++.+| ++.-|-+|..|..+|..+.-..++..+. ++|.|..-|.++|+.++.+|+.+++.||..+|.+--.
T Consensus 146 a~Dv~tLL-~sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 146 ADDVFTLL-NSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHH-hcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 44445555 2344555555555555555443333222 4555555555566666666666666655554432111
Q ss_pred HhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHH
Q psy12605 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 249 (845)
Q Consensus 170 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~ 249 (845)
.-|.+..++...++.-+....+..+.+|.--. | ......++.|..++++...-
T Consensus 219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-P----RLgKKLieplt~li~sT~Am------------------ 271 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-P----RLGKKLIEPITELMESTVAM------------------ 271 (877)
T ss_pred ----ccHHHHHHHhccCCCeehHHHHHHHhhccccC-c----hhhhhhhhHHHHHHHhhHHH------------------
Confidence 22344444443333344444444444444322 0 12234455555554443221
Q ss_pred hhhhhHHHHHHHHHHHH--HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 250 ILVSKMKILVDTVWALS--YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 250 ~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
-+...+..++. +++.+.++.-..+ .-.++.|-.++.+.++.++.-++-+++.+...++...+. .-
T Consensus 272 ------SLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~k 338 (877)
T KOG1059|consen 272 ------SLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HK 338 (877)
T ss_pred ------HHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hH
Confidence 13333333332 2222222211111 123667777888899999999999999998766553332 34
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
+.++++|++.|+.+|-.|+..|..++.. ++... ++..|+..+... +....+-+.+.-+..+|+.+.-
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVsk--kNl~e-----IVk~LM~~~~~a----e~t~yrdell~~II~iCS~snY-- 405 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVSK--KNLME-----IVKTLMKHVEKA----EGTNYRDELLTRIISICSQSNY-- 405 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhh--hhHHH-----HHHHHHHHHHhc----cchhHHHHHHHHHHHHhhhhhh--
Confidence 6789999999999999999988877432 22221 344555555443 3446777777777777764421
Q ss_pred HHHHHcC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHh--cc-----CCCCChhHHHHHHH
Q psy12605 408 QEVVAAG-AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS--FI-----KPDIPISFLRNVTW 479 (845)
Q Consensus 408 ~~l~~~g-~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~--ll-----~~~~~~~~~~~~~~ 479 (845)
..+.+-. .+..++++..-+....=.....-+-.++..-+..|...... +..|+. ++ .+..-.+++..++|
T Consensus 406 ~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~--m~~Ll~~~~~~~s~q~n~~l~eVL~AaaW 483 (877)
T KOG1059|consen 406 QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQ--MSALLDDPLLAGSAQINSQLCEVLYAAAW 483 (877)
T ss_pred hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHH--HHHHHhchhhccchhhccchhHHHHHHHH
Confidence 1122211 13445555443332222222223333333333333322111 111111 11 11222578899999
Q ss_pred HHHHhhcCC
Q psy12605 480 VIVNLCRNK 488 (845)
Q Consensus 480 ~l~nL~~~~ 488 (845)
+++..+...
T Consensus 484 i~GEyse~v 492 (877)
T KOG1059|consen 484 ILGEYSEFV 492 (877)
T ss_pred HHHHHHHHh
Confidence 999887544
No 70
>PF05536 Neurochondrin: Neurochondrin
Probab=98.50 E-value=0.00021 Score=80.98 Aligned_cols=408 Identities=13% Similarity=0.135 Sum_probs=243.4
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCcc--HHHHHhcCCHHHHHHhhccC------CChhHHHHHHHHHHHH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP--IEALIHSGILPVLVECLERS------DRPNLQFEAAWALTNI 116 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~--~~~i~~~g~i~~Lv~lL~~~------~~~~i~~~a~~~L~~l 116 (845)
.+++-+ .+|++.+.+.++.++.-+.+++..++... .+.+.++=+.+-|-.+|++. +....+..|+.+|+.+
T Consensus 6 ~l~~c~-~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCL-SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHH-HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 456667 89999998889999999999988654211 23466776677888888542 2346788899999999
Q ss_pred hcCChhhH--HHHHHcCChHHHHHhhCCCCh-hHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHH
Q psy12605 117 ASGTSAQT--QEVVAAGAVPLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 193 (845)
Q Consensus 117 a~~~~~~~--~~i~~~g~i~~L~~lL~s~~~-~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 193 (845)
|. .++.+ ..++ +-||.|+..+.+++. .+...|+.+|..++ ..++.++.+++.|+++.|++.+.+.. .....
T Consensus 85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~~--~~~E~ 158 (543)
T PF05536_consen 85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQS--FQMEI 158 (543)
T ss_pred cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhCc--chHHH
Confidence 97 45554 3344 489999999988877 99999999999999 66889999999999999999987742 46778
Q ss_pred HHHHHHHhhcCCCCCC---ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 194 VTWVIVNLCRNKDPPP---SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 194 a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
|..++.+++....... ........++.+...+...... .+...+..|..+-.
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~-------------------------~kfell~~L~~~L~ 213 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGE-------------------------DKFELLEFLSAFLP 213 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccc-------------------------hHHHHHHHHHHhcC
Confidence 8888888877553111 1122234445555444433222 34455666655543
Q ss_pred CChhh-HHHHHhcCch----hhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcC-----CccchhhHhh-----
Q psy12605 271 GGNDQ-IQMVIDSGVV----PSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNC-----DALSHFPALL----- 334 (845)
Q Consensus 271 ~~~~~-~~~~~~~g~i----~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~-----~~l~~L~~lL----- 334 (845)
..+.. .......... .-+..+|.+ ..+.-|.+++.+.+.+...-+. .-.+.+. .++-.++++.
T Consensus 214 ~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~-~wl~~~~~~~~~~F~~Llv~l~~VEir 292 (543)
T PF05536_consen 214 RSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP-EWLFADDKKSGKKFLLLLVNLACVEIR 292 (543)
T ss_pred cCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh-HhhcCCCCCCcccHHHHHHHHHHHHHH
Confidence 33110 1111122223 333344433 3556677777776666532110 0001111 1222222221
Q ss_pred ----------cCCch---hhHHHHHH-H----HHHhhc--------CChHHHHHHHh--cCChHHHHHHhhhccc-ccCC
Q psy12605 335 ----------THPKE---KICKEAVW-F----LSNITA--------GNQAQVQAVID--AGLLPKIIANLQKVGR-IVLR 385 (845)
Q Consensus 335 ----------~~~~~---~~~~~a~~-~----L~nl~~--------~~~~~~~~l~~--~~~i~~Lv~lL~~~~~-~~~~ 385 (845)
+.+.. .-+-.+|. + +..++. -.++...++.. .+.+..++++|++..+ ...+
T Consensus 293 ~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d 372 (543)
T PF05536_consen 293 MSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKD 372 (543)
T ss_pred HHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 11110 01111221 1 112222 02233333332 4567778888876542 1133
Q ss_pred hhHHHHHHHHHHHHhcCCh-HhHHHHHHcCChHHHHHhhCCCCH----------HHHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 386 PNLQFEAAWALTNIASGTS-AQTQEVVAAGAVPLFLRLLMSPHS----------NVCEQAVWALGNIIGDGPQLRDYVIN 454 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~----------~v~~~a~~~L~nl~~~~~~~~~~l~~ 454 (845)
+..-..+.++|+.....++ ..++.+ .|.++.++.+...+.. +.+...+-+|+.++.. +..|+.+..
T Consensus 373 ~~~vlAsvR~L~~WLaEe~~~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e-~~gr~~l~~ 449 (543)
T PF05536_consen 373 PDFVLASVRVLGAWLAEETSALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE-EEGRKILLS 449 (543)
T ss_pred hHHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc-HHHHHHHHh
Confidence 4477778888888665444 445555 4889999999886533 4566677777777764 567889999
Q ss_pred CCChHHHHhccC----CCC---C----h-hHHHHHHHHHHHhhcCC
Q psy12605 455 MGVVPPLLSFIK----PDI---P----I-SFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 455 ~g~l~~L~~ll~----~~~---~----~-~~~~~~~~~l~nL~~~~ 488 (845)
.|+.+.+.+.+- ... + . .-...+|.++.|+.-..
T Consensus 450 ~~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~e 495 (543)
T PF05536_consen 450 NGGWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVTE 495 (543)
T ss_pred CCcHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhcc
Confidence 999877775542 211 0 1 13456778888887655
No 71
>KOG1517|consensus
Probab=98.44 E-value=1.2e-05 Score=91.49 Aligned_cols=268 Identities=20% Similarity=0.204 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhh
Q psy12605 61 LQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 140 (845)
Q Consensus 61 ~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL 140 (845)
.|+.|.+.-...-+..++++-+ +|..++.|- + +--|..|+..|+.+-.-.+-....-..-|+.|+.++||
T Consensus 452 eQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLL-S--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLL 521 (1387)
T KOG1517|consen 452 EQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLL-S--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLL 521 (1387)
T ss_pred HHHHHHHHHHHhccccCCChHh-------cchHHHHHH-H--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHh
Confidence 4444544444443333333322 666777773 2 23477888999988776677777777889999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC--CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHH
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD--IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 218 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 218 (845)
+++..+++-.-+.+...|-.-++.++..+++.++-..+++.|..+ .+.+-+..|+.+|+.++++....++.....+.+
T Consensus 522 QS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li 601 (1387)
T KOG1517|consen 522 QSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLI 601 (1387)
T ss_pred ccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHH
Confidence 999999999999999988877788998899887788888888762 245778889999999999886666666666777
Q ss_pred HHHHhhcccC-CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCch
Q psy12605 219 PALNILIHHH-DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297 (845)
Q Consensus 219 ~~L~~ll~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 297 (845)
..-...+.++ .+- .++-+|-+|..|-+...+.+-.-++.++.+.|..+|.++-+
T Consensus 602 ~iCle~lnd~~~pL-------------------------LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vp 656 (1387)
T KOG1517|consen 602 GICLEHLNDDPEPL-------------------------LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVP 656 (1387)
T ss_pred HHHHHHhcCCccHH-------------------------HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccH
Confidence 7666666664 333 77888888988877666655555677899999999999999
Q ss_pred hhHHHHHHHHHHHhcCC----hhhHHHH------------hcCCcc---chhhHhhcCCchhhHHHHHHHHHHhhcCChH
Q psy12605 298 KVQTASLRAVGNIVTGT----DEQTQVI------------LNCDAL---SHFPALLTHPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 298 ~v~~~al~~L~nl~~~~----~~~~~~i------------~~~~~l---~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
+|+.+|+-+|+.+.... ++....+ ++.-.. ..++.++++..+-+|.+..-+|+.++.+...
T Consensus 657 EVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 657 EVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred HHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 99999999999998642 2222211 121112 3566777888888999888888888776655
Q ss_pred HHHHH
Q psy12605 359 QVQAV 363 (845)
Q Consensus 359 ~~~~l 363 (845)
....+
T Consensus 737 ~~~~v 741 (1387)
T KOG1517|consen 737 HLKVV 741 (1387)
T ss_pred HhHHH
Confidence 54433
No 72
>KOG1242|consensus
Probab=98.44 E-value=0.00059 Score=74.82 Aligned_cols=264 Identities=16% Similarity=0.113 Sum_probs=164.6
Q ss_pred ChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 132 AVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
..|-.-+.|++. +..+++..+-..+.++.+-......+. .++..+..-+..+ ..++++....+|..+.-....
T Consensus 56 l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~--~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~--- 129 (569)
T KOG1242|consen 56 LKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPI--SIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSKG--- 129 (569)
T ss_pred HHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchh--HHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhc---
Confidence 344444555543 455666666666666655432221111 1355566666655 457888888888776654322
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
.....+.+.+.+++...+.. .+..+.+.++.+..+.. +..+.+.+++..+..
T Consensus 130 -~~~~~~l~~l~~ll~~~~~~-------------------------~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ 181 (569)
T KOG1242|consen 130 -LSGEYVLELLLELLTSTKIA-------------------------ERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSK 181 (569)
T ss_pred -cCHHHHHHHHHHHhccccHH-------------------------HHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHH
Confidence 12456677777777766665 67778888888776533 455667788888988
Q ss_pred hccCCchhhHHH-HHHHHHHHhcCChhhHHHHhcCC---ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 291 LLSHKEVKVQTA-SLRAVGNIVTGTDEQTQVILNCD---ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 291 lL~~~~~~v~~~-al~~L~nl~~~~~~~~~~i~~~~---~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
.+.+.+...+.. ++-+.-..+..-. ...+.. .+|.++....+..+.+|..|..+...+....+... -.
T Consensus 182 ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK 253 (569)
T KOG1242|consen 182 AIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VK 253 (569)
T ss_pred HhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hh
Confidence 887766554443 2222222221111 111222 44555555567788899888777776644433221 12
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.++|.++.-+... .++.+..++..++.++...+.. -...-...+|.+.+.|.+.+++++.++..++.+++.
T Consensus 254 ~llpsll~~l~~~-----kWrtK~aslellg~m~~~ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 254 LLLPSLLGSLLEA-----KWRTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HhhhhhHHHHHHH-----hhhhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2455665555552 6788999999999887766543 345566899999999999999999999999998875
No 73
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=98.39 E-value=8.9e-08 Score=81.04 Aligned_cols=66 Identities=48% Similarity=0.692 Sum_probs=45.6
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCCChh---hHH-----HHhhhcHHHHHHHHHcCCChHHHHHHHH
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDED---DIE-----KMAQVNLDMLVVEAARKDNPELQLLAVQ 67 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~~---~~~-----~~~~~~i~~lv~~~l~~~~~~~~~~a~~ 67 (845)
||+||++..++|||+||+|.|.|||++......... ... .-....++.+| ..+.|+|+..++.|+.
T Consensus 23 ~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v-~~v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 23 MRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMV-AGVNSDDPEVQLEATQ 96 (97)
T ss_dssp HHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHH-HHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHH-HhcCCCCHHHHHHhhC
Confidence 699999999999999999999999999654322111 111 11345677888 8999999999999875
No 74
>KOG4413|consensus
Probab=98.37 E-value=2.7e-05 Score=77.60 Aligned_cols=338 Identities=15% Similarity=0.169 Sum_probs=217.3
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChh--h--HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE--Q--TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~--~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
.+.|-.-|..++..|+.-++..++.+..+.+. . ...+++++.++.++.++...+.++.+.|...+..++.. +...
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHH
Confidence 34455555678889999999999999877662 2 24455889999999999999999999999999999554 5555
Q ss_pred HHHHhcCChHHH--HHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKI--IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWA 437 (845)
Q Consensus 361 ~~l~~~~~i~~L--v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~ 437 (845)
..+++++....+ ..+-.. .++-++......+..+.+-+++.......+|.+..|..-+.. .+.-|+..++..
T Consensus 163 eaiFeSellDdlhlrnlaak-----cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciEl 237 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAK-----CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIEL 237 (524)
T ss_pred HHhcccccCChHHHhHHHhh-----hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHH
Confidence 777777766554 233233 256677788888899999999999999999999999988887 666788888888
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhH--HHHHH---HHHHHhhcCC-CCCCChhHHHhHHHHHHHhhcCC
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF--LRNVT---WVIVNLCRNK-DPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~--~~~~~---~~l~nL~~~~-~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
...++... ..|+.+-+.|.++.+..++...++..+ .|... ..+++..-.. .+....+...-++.....++..+
T Consensus 238 vteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn 316 (524)
T KOG4413|consen 238 VTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence 88887642 357788899999999999975544332 33222 2333333222 11111122222333444566678
Q ss_pred ChhHHHHHH--HHhhhcCchhhHHHHhh-hhhhHHHHhhhccCCCCcccccccccccccccC-----------CChh--h
Q psy12605 512 DTSVSIYLW--LSIIEKNPQISKILVSK-MKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP-----------GTDE--Q 575 (845)
Q Consensus 512 d~~v~~~~~--l~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~-----------~~~~--~ 575 (845)
|++....+. +..|.++......+... ....+.++.-..+.+.+.. +.+++.++.+|+. |..+ .
T Consensus 317 DpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak-qeaaihaLaaIagelrlkpeqitDgkaeerl 395 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK-QEAAIHALAAIAGELRLKPEQITDGKAEERL 395 (524)
T ss_pred CchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch-HHHHHHHHHHhhccccCChhhccccHHHHHH
Confidence 888777655 66666555443333222 2245555554444443322 2234555555532 1111 1
Q ss_pred HHHHHh-------CCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHH
Q psy12605 576 TQVILN-------CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630 (845)
Q Consensus 576 ~~~l~~-------~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L 630 (845)
+..+.+ .+-+..+..+++.|.|+++..+..++..+++..=.....+-..+++..+
T Consensus 396 rclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiV 457 (524)
T KOG4413|consen 396 RCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIV 457 (524)
T ss_pred HHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeee
Confidence 111111 1334566777888999999999999999987654444444455555444
No 75
>KOG3678|consensus
Probab=98.35 E-value=4.4e-05 Score=79.48 Aligned_cols=241 Identities=16% Similarity=0.253 Sum_probs=152.6
Q ss_pred HHHHHHcCChHHHHHhhCCCCHH--HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHh
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSN--VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 484 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~--v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL 484 (845)
+..+...|+++.|++++..++-+ |+..|...|..+... +.++.+.+-| +..++.+-+...+.+..+..+..+.+|
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 44566779999999999998765 588999999888653 4566666655 455555555555556666666666665
Q ss_pred hcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccc
Q psy12605 485 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI 564 (845)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~ 564 (845)
+.+.
T Consensus 250 FKHS---------------------------------------------------------------------------- 253 (832)
T KOG3678|consen 250 FKHS---------------------------------------------------------------------------- 253 (832)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 5443
Q ss_pred cccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccC-CHHHHHHHHHCCChHHHHHHhhhhhhhhhh
Q psy12605 565 YMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKRSCKILN 643 (845)
Q Consensus 565 l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~ 643 (845)
++.++.++..|+++++..+....+|.+.+.|+.+|+|++-. .+...+.+++..+-.-|+-+.
T Consensus 254 --------eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA--------- 316 (832)
T KOG3678|consen 254 --------EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA--------- 316 (832)
T ss_pred --------HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh---------
Confidence 23346788889999999999999999999999999999854 334444555544333222111
Q ss_pred hcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhc
Q psy12605 644 KYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723 (845)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~ 723 (845)
.+.|.-+|..||.+++.++
T Consensus 317 -------------------------------------------------------------~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 317 -------------------------------------------------------------FSKDELLRLHACLAVAVLA 335 (832)
T ss_pred -------------------------------------------------------------cchHHHHHHHHHHHHhhhh
Confidence 2335556667777777776
Q ss_pred ccCCHHHHHHHH-HcC---CchHHh----------------------------hhhccccHHHHHHHHHHHHHHHHhhHH
Q psy12605 724 ISGNRDQVAKLV-QEG---VIPPFC----------------------------DLLSCKDAQVIQVVLDGINNMLKMADA 771 (845)
Q Consensus 724 ~~~~~~~~~~l~-~~~---~i~~L~----------------------------~~L~~~d~~~~~~al~~L~~l~~~~~~ 771 (845)
+.+.....+ +.| .+++|+ -+|++.--+. .++.+.+-.++..-+
T Consensus 336 ---t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EA--q~i~AF~l~~EAaIK 410 (832)
T KOG3678|consen 336 ---TNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEA--QCIGAFYLCAEAAIK 410 (832)
T ss_pred ---hhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhh--hhhHHHHHHHHHHHH
Confidence 222222232 222 333333 3444322222 333444444433333
Q ss_pred HHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHH
Q psy12605 772 QVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIE 809 (845)
Q Consensus 772 ~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~ 809 (845)
..+.-.++|.+.|++..|..+.+++++--.+.|.+.|.
T Consensus 411 s~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 411 SLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred HhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 33334678999999999999999888866666766665
No 76
>KOG1061|consensus
Probab=98.29 E-value=0.0013 Score=73.89 Aligned_cols=377 Identities=18% Similarity=0.233 Sum_probs=225.2
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG 131 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g 131 (845)
..+.+.-+..+..|++.......-+.+ -+++.|-++.... ..+-+.+...-.-|.+.+...++... +
T Consensus 20 s~l~s~~~~kr~~a~kkvIa~Mt~G~D-------vSslF~dvvk~~~-T~dlelKKlvyLYl~nYa~~~P~~a~-----~ 86 (734)
T KOG1061|consen 20 SQLNSQSKEKRKDAVKKVIAYMTVGKD-------VSSLFPDVVKCMQ-TRDLELKKLVYLYLMNYAKGKPDLAI-----L 86 (734)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCccCcc-------hHhhhHHHHhhcc-cCCchHHHHHHHHHHHhhccCchHHH-----h
Confidence 455555556677776666554444433 1456888899985 45578888888888898887665443 5
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
++..+++=..++++.+|..|++.++.+-.+ ...+. .+.++.+.++...+ -+|+.++-+..++-..+ .+.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey-----~~~Pl~~~l~d~~~-yvRktaa~~vakl~~~~---~~~ 155 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEY-----LCDPLLKCLKDDDP-YVRKTAAVCVAKLFDID---PDL 155 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHH-----HHHHHHHhccCCCh-hHHHHHHHHHHHhhcCC---hhh
Confidence 788899999999999999999999988633 23222 36788888887744 68888888888877654 445
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhh
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 291 (845)
....|.++.|..++.+.++. +...|+.+|..+.+.+.+.-........+..++..
T Consensus 156 ~~~~gl~~~L~~ll~D~~p~-------------------------VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a 210 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSNPM-------------------------VVANALAALSEIHESHPSVNLLELNPQLINKLLEA 210 (734)
T ss_pred ccccchhHHHHHHhcCCCch-------------------------HHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH
Confidence 56789999999999988888 99999999998887655311111122334455555
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
+..-++--+...+.++.+-...++.... .++..+...|.+.+..+...+...+.++...... .....-...-++
T Consensus 211 l~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~p 284 (734)
T KOG1061|consen 211 LNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPP 284 (734)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhccc
Confidence 5555555666677777766544332222 2345566667777777777777777766444333 222333455667
Q ss_pred HHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12605 372 IIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451 (845)
Q Consensus 372 Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 451 (845)
++.++... ++++..+..=+.-+....++..+. ..--.++++ .+...++..=+.++..++.... ..+
T Consensus 285 l~tlls~~------~e~qyvaLrNi~lil~~~p~~~~~----~~~~Ff~ky--nDPiYvK~eKleil~~la~~~n-l~q- 350 (734)
T KOG1061|consen 285 LVTLLSSE------SEIQYVALRNINLILQKRPEILKV----EIKVFFCKY--NDPIYVKLEKLEILIELANDAN-LAQ- 350 (734)
T ss_pred ceeeeccc------chhhHHHHhhHHHHHHhChHHHHh----HhHeeeeec--CCchhhHHHHHHHHHHHhhHhH-HHH-
Confidence 77776653 366666555444444444332110 000001111 1122344444445544443221 111
Q ss_pred HHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 452 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 452 l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
++..+... ..+.+.++.+.+++++++++.-.. ...+++..|..++.
T Consensus 351 -----vl~El~eY-atevD~~fvrkaIraig~~aik~e------~~~~cv~~lLell~ 396 (734)
T KOG1061|consen 351 -----VLAELKEY-ATEVDVDFVRKAVRAIGRLAIKAE------QSNDCVSILLELLE 396 (734)
T ss_pred -----HHHHHHHh-hhhhCHHHHHHHHHHhhhhhhhhh------hhhhhHHHHHHHHh
Confidence 11111111 133446777888888888875442 11455555555555
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=98.28 E-value=0.0019 Score=73.32 Aligned_cols=236 Identities=15% Similarity=0.196 Sum_probs=160.1
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh---hHHHHHhcCChhhHHhhhcCC------CCHHHHHHHHHHHHHhh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPD------IPISFLRNVTWVIVNLC 202 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~---~r~~i~~~g~i~~Lv~ll~~~------~~~~~~~~a~~~L~~l~ 202 (845)
.+..-+.+|++.+.+-+-.++-.+.++...++. .++.+.+.=+.+-+-++|+.. .+...+.-|+.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 455667788888877777788888888866553 344577765577777888652 24678888999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhcccCCc-hhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHHHDT-SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
..++. .......+.+|.|+..+...+. . +..+++.+|..++. .++..+.+++
T Consensus 86 ~~~~~-a~~~~~~~~IP~Lle~l~~~s~~~-------------------------~v~dalqcL~~Ias-~~~G~~aLl~ 138 (543)
T PF05536_consen 86 RDPEL-ASSPQMVSRIPLLLEILSSSSDLE-------------------------TVDDALQCLLAIAS-SPEGAKALLE 138 (543)
T ss_pred CChhh-hcCHHHHHHHHHHHHHHHcCCchh-------------------------HHHHHHHHHHHHHc-CcHhHHHHHh
Confidence 96533 2335577899999999987666 6 88999999999994 4555677889
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh-----HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCC
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ-----TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
.|.++.|++.+.+ .+.....|+.+|.+++...+.. .+.+ ..+++.+-..+.......+-+.+..|..+....
T Consensus 139 ~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 139 SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 9999999999977 6667889999999987654311 1111 134455666666666777888899999886655
Q ss_pred hHH-HHHHHh----cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 357 QAQ-VQAVID----AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 357 ~~~-~~~l~~----~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
+.. ....-. ..+...+-.++.+. ..+.-|..+......+..
T Consensus 216 ~~~~~~~~~~~~W~~~l~~gl~~iL~sr----~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 216 PILPLESPPSPKWLSDLRKGLRDILQSR----LTPSQRDPALNLAASLLD 261 (543)
T ss_pred CccccccCChhhhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHH
Confidence 211 111111 22334444455443 355556666555555543
No 78
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=3.8e-06 Score=88.84 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~ 378 (845)
-..+++.+|.+++..-...+.-+.+..+.+.|+++|+.++..+.-.+...++|......+....+++.+++..|+..+.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 45577888998887767778888888999999999999888888888999999988888888899999999999999986
Q ss_pred cccccCChhHHHHHHHHHHHHhcCChHh-HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 379 VGRIVLRPNLQFEAAWALTNIASGTSAQ-TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 379 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
. +..+|....|.+.++..++.+. .-.+...-++..++.+.+++...|+.+++..|.|+..++
T Consensus 485 K-----DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 485 K-----DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred c-----hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 3 6799999999999999876544 557788889999999999999999999999999998765
No 79
>KOG3678|consensus
Probab=98.25 E-value=2.9e-05 Score=80.74 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=144.2
Q ss_pred HHHHhcCchhhHHhhccCCch--hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhh
Q psy12605 277 QMVIDSGVVPSLIPLLSHKEV--KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNIT 353 (845)
Q Consensus 277 ~~~~~~g~i~~Lv~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~ 353 (845)
..+...|.+..|+.++..++. .++..|.+.|-.+... +++..+...| +..++.+-+. ...+..+..+..|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345567999999999988764 4699999999988653 3345555544 5555555543 45678889999999999
Q ss_pred cCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 354 AGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 354 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
.++.+..+.++..|++..++-..+.. +|.+-+.++.+|+|++- +..+..+.+++..+-+.|..+-.+.++-.+.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt-----~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~ 325 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRT-----DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRL 325 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccC-----CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 99999999999999999998888874 79999999999999886 4557788899999999999999999888999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCC
Q psy12605 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP 470 (845)
Q Consensus 433 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~ 470 (845)
.|+.+.+-++... ++...+.++|-+..+-.++...++
T Consensus 326 ~AClAV~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP 362 (832)
T KOG3678|consen 326 HACLAVAVLATNK-EVEREVRKSGTLALVEPLVASLDP 362 (832)
T ss_pred HHHHHHhhhhhhh-hhhHHHhhccchhhhhhhhhccCc
Confidence 9999999988754 344456677765544444444444
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.25 E-value=0.00012 Score=79.69 Aligned_cols=244 Identities=20% Similarity=0.096 Sum_probs=171.0
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.++.|+..|...++++++..++.++.... ++ .++..|+..|.++++.++..++.+|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~------- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR------- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch-------
Confidence 58889999965666787776666654332 11 1488999999999999999999999987522
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
+..+.|+.++.+. +..++..++.++.... ....+.+..+++++++.
T Consensus 117 ----~a~~~L~~~L~~~-~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~----------------- 162 (410)
T TIGR02270 117 ----QAEPWLEPLLAAS-EPPGRAIGLAALGAHR------------HDPGPALEAALTHEDAL----------------- 162 (410)
T ss_pred ----HHHHHHHHHhcCC-ChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHH-----------------
Confidence 2366778888766 4467877776666521 12345677778888888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccc
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~ 328 (845)
++..|+.+|.++.. ...++.|...+.+.++.|+..|+.+++.+- .+ .++.
T Consensus 163 --------Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG--~~---------~A~~ 212 (410)
T TIGR02270 163 --------VRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAG--SR---------LAWG 212 (410)
T ss_pred --------HHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC--CH---------hHHH
Confidence 88999999987653 244566778889999999999999997762 22 2334
Q ss_pred hhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH
Q psy12605 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ 408 (845)
Q Consensus 329 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (845)
.+..+........+..+..++... +. ...++.|..++++ +.++..++++++.+-..
T Consensus 213 ~l~~~~~~~g~~~~~~l~~~lal~--~~---------~~a~~~L~~ll~d-------~~vr~~a~~AlG~lg~p------ 268 (410)
T TIGR02270 213 VCRRFQVLEGGPHRQRLLVLLAVA--GG---------PDAQAWLRELLQA-------AATRREALRAVGLVGDV------ 268 (410)
T ss_pred HHHHHHhccCccHHHHHHHHHHhC--Cc---------hhHHHHHHHHhcC-------hhhHHHHHHHHHHcCCc------
Confidence 555544444444444444444433 11 1456777888765 35899999999977543
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 409 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 409 ~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
..++.|+..+.++. ++..|..++..|++-.
T Consensus 269 -----~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 269 -----EAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred -----chHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 47888888887665 9999999999998754
No 81
>KOG1060|consensus
Probab=98.20 E-value=0.00088 Score=74.73 Aligned_cols=356 Identities=16% Similarity=0.175 Sum_probs=205.7
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhH
Q psy12605 99 RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178 (845)
Q Consensus 99 ~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~L 178 (845)
.+..+.+|..|+-++.++-+-+++.... .++.+-.||.+.++-+.-.|+.+.-.+|-+ .-+.+-. -...+
T Consensus 153 ~D~s~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIHk--nyrkl 222 (968)
T KOG1060|consen 153 TDPSPYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIHK--NYRKL 222 (968)
T ss_pred cCCcHHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhhH--HHHHH
Confidence 4567788888888888888766766664 345566778888888888888888888743 3333322 24455
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh---hHHh-h---HHHHHHhhccc---CCchh--hHHHHHH-HhhhCh
Q psy12605 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM---STII-E---LLPALNILIHH---HDTSV--SIYLWLS-IIEKNP 245 (845)
Q Consensus 179 v~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~-~---~l~~L~~ll~~---~~~~~--~~~~~~~-l~~~~~ 245 (845)
++++..- +.--+..++..|..-|+..=+.+.. .... + -.+....-++. .|+++ .++.... +...||
T Consensus 223 C~ll~dv-deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~ 301 (968)
T KOG1060|consen 223 CRLLPDV-DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP 301 (968)
T ss_pred Hhhccch-hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc
Confidence 5555433 3344555566666666543211100 0000 0 00000000111 12221 1111122 233344
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~ 325 (845)
. ++-.++.+..+++-.. . ...+++.|+.+|.+ +..++...+..+..++...+..
T Consensus 302 s----------VVmA~aql~y~lAP~~--~-----~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~l-------- 355 (968)
T KOG1060|consen 302 S----------VVMAVAQLFYHLAPKN--Q-----VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTL-------- 355 (968)
T ss_pred H----------HHHHHHhHHHhhCCHH--H-----HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhh--------
Confidence 3 7777888888887432 1 22457789998865 4457777788888887654332
Q ss_pred ccchhhHhh-cCCc-hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 326 ALSHFPALL-THPK-EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 326 ~l~~L~~lL-~~~~-~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
+.|.+-.+. .+.| ..++.--+.+|.+++.... +. .+++.+-.++.+. +..+...+..+++..+...
T Consensus 356 F~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn--i~-----~ILrE~q~YI~s~-----d~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 356 FEPHLKSFFVRSSDPTQVKILKLEILSNLANESN--IS-----EILRELQTYIKSS-----DRSFAAAAVKAIGRCASRI 423 (968)
T ss_pred hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc--HH-----HHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHhh
Confidence 234455544 2333 3445555667777743211 11 1334455555554 3356677777777776543
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
.. +...++..|+.++.+.+..|...++..|..+...+|.-. ..++..|.+++.+-.-..-+..+.|.++.
T Consensus 424 ~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-----~~ii~~La~lldti~vp~ARA~IiWLige 493 (968)
T KOG1060|consen 424 GS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-----LEILFQLARLLDTILVPAARAGIIWLIGE 493 (968)
T ss_pred Cc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-----HHHHHHHHHHhhhhhhhhhhceeeeeehh
Confidence 22 223467789999999999999999999999988766422 22456677777544334445667899998
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~ 518 (845)
.|... .....+.+..+.+-+.++++++.-.
T Consensus 494 ~~e~v-----pri~PDVLR~laksFs~E~~evKlQ 523 (968)
T KOG1060|consen 494 YCEIV-----PRIAPDVLRKLAKSFSDEGDEVKLQ 523 (968)
T ss_pred hhhhc-----chhchHHHHHHHHhhccccchhhHH
Confidence 88653 2344566666777777777666433
No 82
>KOG0212|consensus
Probab=98.20 E-value=0.00022 Score=76.55 Aligned_cols=347 Identities=17% Similarity=0.157 Sum_probs=192.5
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
-.+++|+.+.++ ++.+..+|..|+..|.++++.. +......-..+...|.++...++..++.. +..|-.+..+
T Consensus 82 ~~~iv~Pv~~cf-~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikd---- 154 (675)
T KOG0212|consen 82 LEKIVPPVLNCF-SDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKD---- 154 (675)
T ss_pred HHHhhHHHHHhc-cCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHH----
Confidence 356788889998 5677899999999999998742 22222222345666666666665555433 2333322211
Q ss_pred HHHHHhcC---ChhhHHhhhcC---CCCHHHHHHHHHHHHHhhcCCCCCCCh-hHHhhHHHHHHhhcccCCchhhHHHHH
Q psy12605 166 RDYVINMG---VVPPLLSFIKP---DIPISFLRNVTWVIVNLCRNKDPPPSM-STIIELLPALNILIHHHDTSVSIYLWL 238 (845)
Q Consensus 166 r~~i~~~g---~i~~Lv~ll~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~~~~~~~~ 238 (845)
.+.+.. -++.++.+|+. ..+...|...+.-|..+-.-+ ..++ ......++-|.+++.++.++
T Consensus 155 --IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~e------- 223 (675)
T KOG0212|consen 155 --IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDE------- 223 (675)
T ss_pred --hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHH-------
Confidence 111111 24444544432 112245555555555443222 2222 23345667777888877777
Q ss_pred HHhhhChhhHHhhhhhHHHHHHHHHHHHH----hhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC
Q psy12605 239 SIIEKNPQISKILVSKMKILVDTVWALSY----LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~a~~~L~~----l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 314 (845)
++..+-.++.. +... +... --...++.++.-+.++++.++..|+.-|..+..-.
T Consensus 224 ------------------Vr~~~~t~l~~fL~eI~s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 224 ------------------VRTLTDTLLSEFLAEIRSS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred ------------------HHHHHHHHHHHHHHHHhcC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 44333333332 2221 1111 12256788899999999999999988888877543
Q ss_pred hhhHHHHhcCCccchhhHhhcCCch-hhHHHHHH---HHHHhhcCChHHHHHHHh-cCChHHHHHHhhhcccccCChhHH
Q psy12605 315 DEQTQVILNCDALSHFPALLTHPKE-KICKEAVW---FLSNITAGNQAQVQAVID-AGLLPKIIANLQKVGRIVLRPNLQ 389 (845)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~---~L~nl~~~~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~~~~~v~ 389 (845)
+.. -...-.|++..++.++.+..+ .++..+.. .+..++... ...+. ++ ..++..+-+.+.+ +..+.|
T Consensus 282 g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~-----~~~~tr 353 (675)
T KOG0212|consen 282 GRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSD-----DREETR 353 (675)
T ss_pred Ccc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHhhc-----chHHHH
Confidence 321 112223666777777776555 34443322 223332211 11111 22 2345666666666 367788
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC--C
Q psy12605 390 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--P 467 (845)
Q Consensus 390 ~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~--~ 467 (845)
..+..-+..+-...+.. -........+.|+.-|.+.+++|...++..+++++.++... +..+-+.++|+ .
T Consensus 354 i~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~-------~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP-------NLRKFLLSLLEMFK 425 (675)
T ss_pred HHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc-------cHHHHHHHHHHHHh
Confidence 87766666665433322 22233456778999999999999999999999999866432 22333444433 1
Q ss_pred CCChhHHHHHHHHHHHhhcCC
Q psy12605 468 DIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+++.-+.......++.||-.-
T Consensus 426 e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 426 EDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred hhhHHHHhhhhHHHHHHHHHh
Confidence 222233445566666776533
No 83
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.16 E-value=3.5e-06 Score=59.07 Aligned_cols=40 Identities=43% Similarity=0.792 Sum_probs=38.1
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
+++++..+++.|++|.|+++|+++++++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999997
No 84
>KOG1242|consensus
Probab=98.15 E-value=0.0047 Score=67.96 Aligned_cols=396 Identities=14% Similarity=0.140 Sum_probs=227.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
++.++ +-+..+.++.|.....+|..+........... +.+.+.++++ ......|..+++.++.+..+. ...
T Consensus 98 ~~~~~-~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 98 IEILL-EELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLT-STKIAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHH-HhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhc-cccHHHHhhhhHHHHHHHcCc--HHh
Confidence 44455 67777888888888888887765443322222 4777888885 566678999999999998763 455
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHH-HHHHHHHhcCCChhhHHHHHhcCC---hhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQ-AVWALGNIIGDGPQLRDYVINMGV---VPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~-a~~~L~nla~~~~~~r~~i~~~g~---i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
.+.+.+.+..|-+...+.....+.. ++-+.-..+...- ...+.+. +|.++....+. ...+|..|..+...+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAI 243 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHH
Confidence 5667788888888887764444332 2222221111100 1112223 34444444333 346787777666665
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
.+.-. .....-.+|.+..-+.....+ .+..++..+..++...+...... -
T Consensus 244 ~~~~~----~~aVK~llpsll~~l~~~kWr-------------------------tK~aslellg~m~~~ap~qLs~~-l 293 (569)
T KOG1242|consen 244 MRCLS----AYAVKLLLPSLLGSLLEAKWR-------------------------TKMASLELLGAMADCAPKQLSLC-L 293 (569)
T ss_pred HHhcC----cchhhHhhhhhHHHHHHHhhh-------------------------hHHHHHHHHHHHHHhchHHHHHH-H
Confidence 54321 122334455544444333333 66677777887777766665554 6
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcC--ChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTG--TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~--~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
..++|.+.+.|.+..++++.++..++..++.- +++.. ..+|.|++.+.++...+. ++...|+.-..-
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV---- 362 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPSCYTP-ECLDSLGATTFV---- 362 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcccchH-HHHHhhcceeee----
Confidence 68999999999999999999999999998753 22211 367888888887653332 222333321100
Q ss_pred HHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC--ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHH
Q psy12605 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG--TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA 437 (845)
Q Consensus 360 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 437 (845)
. .+++--+..++.++.++. .+.+..+++.++.++.|+++- ++.....+. ...+|-|-..+.+..|++|.-+..+
T Consensus 363 -~-~V~~psLalmvpiL~R~l-~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 363 -A-EVDAPSLALMVPILKRGL-AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred -e-eecchhHHHHHHHHHHHH-hhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHH
Confidence 0 012223334444444321 013667889999999999873 232222222 1245556666667789999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhh
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 508 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll 508 (845)
|+.+..+-... .+ .+.++.+...+..........-++..++..+.+. ......+.++.+..-.
T Consensus 439 L~~l~e~~g~~--~f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~----~v~~~~~~~~~~~a~~ 501 (569)
T KOG1242|consen 439 LGALLERLGEV--SF--DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGL----GVEKVEDILPEILANA 501 (569)
T ss_pred HHHHHHHHHhh--cc--cccccHHHHhhccchhhhhhHHHhhhHHHHHhcc----cchHHHHHHHHHHHHH
Confidence 98776432111 11 3455666666554433222333344444444333 1234445555554333
No 85
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.12 E-value=0.003 Score=68.58 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=99.9
Q ss_pred ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc---CChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 368 LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 368 ~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
++..++..|++ ..+.++..|+...+.++. .+.+ .+.+...| -.|.+.|....+++....+.+++.|...
T Consensus 605 ivStiL~~L~~-----k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 605 IVSTILKLLRS-----KPPDVRIRAADLMGSLAKVLKACGE-TKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHHHhcC-----CCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 45566777777 478999999888888753 2211 12222222 3477888889999999888888887642
Q ss_pred ChHHHHH-HHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--H
Q psy12605 445 GPQLRDY-VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW--L 521 (845)
Q Consensus 445 ~~~~~~~-l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~--l 521 (845)
.. .+.. ==-.|+++.|..+|.+.. .++..+.+..++-+|...+..........+.--|..++.+...+++.++. +
T Consensus 677 ~~-~~~mqpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 677 HR-FRSMQPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETF 754 (975)
T ss_pred hc-ccccCCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 10 0000 002478888988887654 37888889999999998766555556666666677778888888887654 5
Q ss_pred Hhhhc
Q psy12605 522 SIIEK 526 (845)
Q Consensus 522 ~~l~~ 526 (845)
.+++.
T Consensus 755 G~Is~ 759 (975)
T COG5181 755 GCISR 759 (975)
T ss_pred hhHHh
Confidence 66554
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.11 E-value=0.00032 Score=76.32 Aligned_cols=243 Identities=16% Similarity=0.088 Sum_probs=166.9
Q ss_pred cHHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAAR-KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~-~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.++.++ ..+. ++++.....++..+. ..+ ++ ..+..|++.| .+.++.++..++.+|..+-..
T Consensus 55 a~~~L~-~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~~---- 116 (410)
T TIGR02270 55 ATELLV-SALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVL-QAGPEGLCAGIQAALGWLGGR---- 116 (410)
T ss_pred HHHHHH-HHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHh-cCCCHHHHHHHHHHHhcCCch----
Confidence 345555 6663 455655554444442 212 11 1389999999 466778999999999887432
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
+..+.|+.+|+++++.++..++.+++..-.+ ..+.+..+|++. +..++..|+.+|..+..
T Consensus 117 -------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------------~~~~L~~~L~d~-d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 117 -------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD------------PGPALEAALTHE-DALVRAAALRALGELPR 176 (410)
T ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC------------hHHHHHHHhcCC-CHHHHHHHHHHHHhhcc
Confidence 4788899999999999999999888874322 246777888765 55899999999988764
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
. ..++.|...+.+.++. ++..|.+++..+.. . .
T Consensus 177 ~-----------~a~~~L~~al~d~~~~-------------------------VR~aA~~al~~lG~--~---------~ 209 (410)
T TIGR02270 177 R-----------LSESTLRLYLRDSDPE-------------------------VRFAALEAGLLAGS--R---------L 209 (410)
T ss_pred c-----------cchHHHHHHHcCCCHH-------------------------HHHHHHHHHHHcCC--H---------h
Confidence 3 3566777888888888 89999999876532 1 2
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
.+..+..+...+.......+...++.. +.+ ..++.|..++.++. ++..++++++.+-
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg---------- 266 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG---------- 266 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC----------
Confidence 234555544444444444444444433 211 46677888887744 8999999999872
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
....++.|++.+.+ +.++..|..++..|+.-+
T Consensus 267 -~p~av~~L~~~l~d-------~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 267 -DVEAAPWCLEAMRE-------PPWARLAGEAFSLITGMD 298 (410)
T ss_pred -CcchHHHHHHHhcC-------cHHHHHHHHHHHHhhCCC
Confidence 23467888888864 359999999999998643
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=4.3e-05 Score=81.12 Aligned_cols=268 Identities=16% Similarity=0.154 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc
Q psy12605 148 CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227 (845)
Q Consensus 148 ~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 227 (845)
..+++.+|-.++..-...|.-+.+..+.++|+++|.++ +.-+.-.+...++|+.-.-.+........+++..|+.++.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 44556667777765566788888889999999999886 33455567777888776655666677788999999999998
Q ss_pred CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHH
Q psy12605 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRA 306 (845)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~ 306 (845)
.|.. .+....|.+.++.-+..+..+ .+...-++..++.+..++...++...+..
T Consensus 485 KDda-------------------------Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQi 539 (743)
T COG5369 485 KDDA-------------------------LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQI 539 (743)
T ss_pred chhh-------------------------hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHH
Confidence 8777 889999999999876554322 23456778899999999999999999999
Q ss_pred HHHHhcCC---hhhHHHHhcCC----ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh-cCChHHHHHHhhh
Q psy12605 307 VGNIVTGT---DEQTQVILNCD----ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID-AGLLPKIIANLQK 378 (845)
Q Consensus 307 L~nl~~~~---~~~~~~i~~~~----~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~Lv~lL~~ 378 (845)
|+|+..+. +.....+++.. ....+++.+...++-.-...+..|.++++.+......+.+ .+.+..+.+.|..
T Consensus 540 lrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 540 LRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred HHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence 99997632 22222222221 3455666667777777777799999998887777666654 3444444433321
Q ss_pred cc------------------------------------------------cccCChhHHHHHHHHHHHHhc---C-----
Q psy12605 379 VG------------------------------------------------RIVLRPNLQFEAAWALTNIAS---G----- 402 (845)
Q Consensus 379 ~~------------------------------------------------~~~~~~~v~~~a~~~L~~l~~---~----- 402 (845)
.. ..+++.+.-.+..|.+.|+.- +
T Consensus 620 ~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtr 699 (743)
T COG5369 620 FAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTR 699 (743)
T ss_pred HcccCCCCCCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccch
Confidence 10 011334566677788777542 1
Q ss_pred -ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 403 -TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 403 -~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
+.+..+.+.+.|.-+.+..+..++++.|++.+-.+|.++
T Consensus 700 atveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 700 ATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred hhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 225677888889899999999999999999999998876
No 88
>KOG0915|consensus
Probab=98.09 E-value=0.0053 Score=73.61 Aligned_cols=341 Identities=14% Similarity=0.105 Sum_probs=173.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhc-CChhhHHHHH
Q psy12605 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS-GTSAQTQEVV 128 (845)
Q Consensus 50 v~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~-~~~~~~~~i~ 128 (845)
+...+.+++|..|..+..=|-.+..+-....-.......+......+| .+++.-+|--|+.-|+-+-. ++...++.
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~L-sd~dEf~QDvAsrGlglVYelgd~~~k~~-- 899 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLL-SDNDEFSQDVASRGLGLVYELGDSSLKKS-- 899 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHh-cccHHHHHHHHhcCceEEEecCCchhHHH--
Confidence 336778888988888765554443332211111122234457778888 45666667666665554322 22333333
Q ss_pred HcCChHHHHHhhCCCC---------hhH-------------HHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC
Q psy12605 129 AAGAVPLFLRLLMSPH---------SNV-------------CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI 186 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~---------~~v-------------~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~ 186 (845)
.+..|++-|-.+. .++ ......=|+|+|++- -+...|-.++++.+++.
T Consensus 900 ---LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-------~qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 900 ---LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-------GQPDLVYKFMQLANHNA 969 (1702)
T ss_pred ---HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-------CChHHHHHHHHHhhhhc
Confidence 4445555553321 111 112233344444331 01112333444444443
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH
Q psy12605 187 PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266 (845)
Q Consensus 187 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~ 266 (845)
.=.-+.-|+.-+..++.... ..........+|.|.+.=.++++. ++......=.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~-------------------------Vq~aM~sIW~ 1023 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKK-------------------------VQDAMTSIWN 1023 (1702)
T ss_pred hhhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHH-------------------------HHHHHHHHHH
Confidence 22334445555555554331 111122334555555554555555 3333222222
Q ss_pred HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh--hHHHHhcCCccchhhHhhcCCchhhHHH
Q psy12605 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE--QTQVILNCDALSHFPALLTHPKEKICKE 344 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~ 344 (845)
.|...+......+. ..+++-|+.-|.+....||++++-+|..+..+.+. ..+.+- .....+.+.+++-.+.+|+.
T Consensus 1024 ~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~a 1100 (1702)
T KOG0915|consen 1024 ALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREA 1100 (1702)
T ss_pred HhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333332 25677778888899999999999999999987543 222221 24445555566666777766
Q ss_pred H---HHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHH
Q psy12605 345 A---VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421 (845)
Q Consensus 345 a---~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~ 421 (845)
| +.+|+.++....+.....-...++..++.+|-+.+-..+-++++..+..++..++.+.+...+... ...++.|+.
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLN 1179 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHH
Confidence 5 455665543221111111112234444544444332224678999999999999976654322211 245666777
Q ss_pred hhCCCCHHHHHH
Q psy12605 422 LLMSPHSNVCEQ 433 (845)
Q Consensus 422 lL~~~~~~v~~~ 433 (845)
....-.+.|...
T Consensus 1180 ~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1180 AYSELEPQVLNY 1191 (1702)
T ss_pred HccccchHHHHH
Confidence 766655555543
No 89
>KOG0211|consensus
Probab=98.08 E-value=0.0035 Score=72.64 Aligned_cols=337 Identities=16% Similarity=0.150 Sum_probs=207.1
Q ss_pred CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHH
Q psy12605 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136 (845)
Q Consensus 57 ~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L 136 (845)
..-.++.+++..+...........- ..-.+|.+..+- .++..+.|..++..+.......++ ..++...-+..
T Consensus 171 eet~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~-~~d~~~sr~sacglf~~~~~~~~~---~~vk~elr~~~ 242 (759)
T KOG0211|consen 171 EETGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLA-TGDWFQSRLSACGLFGKLYVSLPD---DAVKRELRPIV 242 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHcc-chhhhhcchhhhhhhHHhccCCCh---HHHHHHHHHHH
Confidence 3344577778888777654322111 122344433333 344555666777777776654332 23334456666
Q ss_pred HHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhh
Q psy12605 137 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE 216 (845)
Q Consensus 137 ~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 216 (845)
-++.+...+.++..++.-+++++.. ........+.++.+..+...+ ...++..|...+.++...-+... .....
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~--d~~~~ 316 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD--DVVKS 316 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch--hhhhh
Confidence 6777778899999999999999853 334667778888889888777 45899999998888877553221 34556
Q ss_pred HHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCc
Q psy12605 217 LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296 (845)
Q Consensus 217 ~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 296 (845)
..+.+++...+.+..++- +....++-|...-.. .......+++...++++..
T Consensus 317 ~~~~l~~~~~d~~~~v~~----------------------~~~~~~~~L~~~~~~------~~~~~~~~~~~~~l~~~~~ 368 (759)
T KOG0211|consen 317 LTESLVQAVEDGSWRVSY----------------------MVADKFSELSSAVGP------SATRTQLVPPVSNLLKDEE 368 (759)
T ss_pred hhHHHHHHhcChhHHHHH----------------------HHhhhhhhHHHHhcc------ccCcccchhhHHHHhcchh
Confidence 677777777665554100 222223322222111 1112345677888888888
Q ss_pred hhhHHHHHHHHHHHhcC-ChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 297 VKVQTASLRAVGNIVTG-TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 297 ~~v~~~al~~L~nl~~~-~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
.+.+.++..-...++.. +......+.....+|.+-.+..+.+..++...+.....+.--.+. .---....|.++..
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k---~~ti~~llp~~~~~ 445 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK---ERTISELLPLLIGN 445 (759)
T ss_pred hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc---CcCccccChhhhhh
Confidence 88888777766666532 223334455556788888888888888888877766665332220 00012356666767
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++ ..+.++....+.+..+-...............++.+..+-......++....+.+..++.
T Consensus 446 l~d-----e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 446 LKD-----EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred cch-----hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 766 478899988887766554333333334444556667777666677778777777777664
No 90
>KOG0212|consensus
Probab=98.08 E-value=0.00034 Score=75.08 Aligned_cols=332 Identities=14% Similarity=0.129 Sum_probs=195.6
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH--HhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV--INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i--~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
.+.+|+.+..+.+++..++..|+..|.|++.- .|..+ ....++..+.++.... + .-.+.++..+-.+.++--.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv---~k~~v~~~Fn~iFdvL~klsaDs-d-~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV---AKGEVLVYFNEIFDVLCKLSADS-D-QNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHH---hccCcccchHHHHHHHHHHhcCC-c-cccccHHHHHHHHHHHhcc
Confidence 36899999999999999999999999999843 22221 1222334444444332 2 3345566666666665422
Q ss_pred CCC-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH-HhcCch
Q psy12605 208 PPS-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV-IDSGVV 285 (845)
Q Consensus 208 ~~~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g~i 285 (845)
... .....+.+|.|...+...++. ++.....-+..+-...+ ++++ .-..++
T Consensus 158 e~~~tFsL~~~ipLL~eriy~~n~~-------------------------tR~flv~Wl~~Lds~P~--~~m~~yl~~~l 210 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERIYVINPM-------------------------TRQFLVSWLYVLDSVPD--LEMISYLPSLL 210 (675)
T ss_pred ccccccCHHHHHHHHHHHHhcCCch-------------------------HHHHHHHHHHHHhcCCc--HHHHhcchHHH
Confidence 222 345667888887777776666 44444443443322221 1222 123567
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcC---ChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTG---TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~---~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
+-|..+|++++.+|+..+=.+++++... ++.. +--...++.++..+.++++.++..|..-+..+..-.+.. -.
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l 286 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LL 286 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hh
Confidence 7788889999999987665555554321 1111 112257788999999999999988877676664433221 11
Q ss_pred HHhcCChHHHHHHhhhcccccCChhHHHHHHHH---HHHHhcCChHhHHHHHHc-CChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA---LTNIASGTSAQTQEVVAA-GAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~---L~~l~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
..-+|++..++.++.+.. ...++..+... +..+++.. ..... ++. ..+..+.+++.++..+.|..++.-+
T Consensus 287 ~~~s~il~~iLpc~s~~e----~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTE----EMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWI 360 (675)
T ss_pred hhhhhhhhhcccCCCCCc----cccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 223566677777776541 22233333222 22233211 11111 333 3578899999999999999888777
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 439 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 439 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
..+-...+. .-.......++.|++-|.+.++ ++.......++++|.....+ ...+++..|..++.
T Consensus 361 ~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd-~vvl~~L~lla~i~~s~~~~----~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 361 ILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSD-EVVLLALSLLASICSSSNSP----NLRKFLLSLLEMFK 425 (675)
T ss_pred HHHHhhCcc-hhhhhccHHHHHHHHhhcCchh-HHHHHHHHHHHHHhcCcccc----cHHHHHHHHHHHHh
Confidence 666554332 1122234466777777765554 77888888999999876432 22444444444444
No 91
>KOG1058|consensus
Probab=98.05 E-value=0.0035 Score=69.78 Aligned_cols=375 Identities=14% Similarity=0.154 Sum_probs=218.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-Ch--hhH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-TS--AQT 124 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-~~--~~~ 124 (845)
++. +.|.+++.+.+..|+..+..++.+++.-+ +++-.++...-.+.+.+++..- ...+.+.-. ++ ...
T Consensus 24 ~ik-~~Lek~~~~~KIeamK~ii~~mlnGe~~p-------~Llm~IiRfvlps~~~elKKLl-y~ywE~vPKt~~dgkl~ 94 (948)
T KOG1058|consen 24 EIK-EKLEKGDDEVKIEAMKKIIALMLNGEDLP-------SLLMTIIRFVLPSRNHELKKLL-YYYWELVPKTDSDGKLL 94 (948)
T ss_pred HHH-HHHhcCChHHHHHHHHHHHHHHHcCCCch-------HHHHHHhheeeccCchHHHHHH-HHHHHHccccCCCcccH
Confidence 455 78899999999999999888877765421 1233344443245565666543 444444422 11 122
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
..++= +...+-+=|++|++-+|-..++.|+.+= .++.-+. .+|.+...|.+. +.-+|++|+-++..+.+.
T Consensus 95 ~EMIL--vcna~RkDLQHPNEyiRG~TLRFLckLk--E~ELlep-----l~p~IracleHr-hsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 95 HEMIL--VCNAYRKDLQHPNEYIRGSTLRFLCKLK--EPELLEP-----LMPSIRACLEHR-HSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHHH--HHHHHhhhccCchHhhcchhhhhhhhcC--cHHHhhh-----hHHHHHHHHhCc-chhhhhhhheeehhHHhh
Confidence 22221 3445556788999999999999999983 3444333 467788888877 558999999998888775
Q ss_pred CCCCCChhHHhhHHHHHHhhc-ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 205 KDPPPSMSTIIELLPALNILI-HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
.+. ....+-..+-..+ ...|+. .+.+|+-.|... +++..-..
T Consensus 165 ~~~-----L~pDapeLi~~fL~~e~Dps-------------------------CkRNAFi~L~~~---D~ErAl~Y---- 207 (948)
T KOG1058|consen 165 FEH-----LIPDAPELIESFLLTEQDPS-------------------------CKRNAFLMLFTT---DPERALNY---- 207 (948)
T ss_pred hhh-----hcCChHHHHHHHHHhccCch-------------------------hHHHHHHHHHhc---CHHHHHHH----
Confidence 311 0112222222333 345666 666666555432 22211111
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+...+.-+.+-++..+...+..|...+..++..+. ..+..+..+|.+.++.++-+|+.+|..++.. +...+.
T Consensus 208 -l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~- 279 (948)
T KOG1058|consen 208 -LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA- 279 (948)
T ss_pred -HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH-
Confidence 11111122333566777888888888876655444 3567799999888999999999998888443 333222
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
....++.++.+. .+-.++.-..--|..+...+... -.|.+--+++.|++++-+++..++.....++.
T Consensus 280 ----Aa~~~i~l~~ke----sdnnvklIvldrl~~l~~~~~~i-----l~~l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 280 ----AASTYIDLLVKE----SDNNVKLIVLDRLSELKALHEKI-----LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred ----HHHHHHHHHHhc----cCcchhhhhHHHHHHHhhhhHHH-----HHHHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 234556666554 24445544444444443222211 12456668889999999999999988777765
Q ss_pred CChHHHHHHHhCCChHHHHhccC----------CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCCh
Q psy12605 444 DGPQLRDYVINMGVVPPLLSFIK----------PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 513 (845)
Q Consensus 444 ~~~~~~~~l~~~g~l~~L~~ll~----------~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~ 513 (845)
... +..++.+|+ .++..+.++..+.++.-.+-..+ +.-...++.+...+.+.++
T Consensus 347 srN-----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-----~~aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 347 SRN-----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-----EVAATVVSLLLDFISDSNE 410 (948)
T ss_pred hcc-----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-----HHHHHHHHHHHHHhccCCH
Confidence 321 222333332 22234556666667666554442 2334566666666655554
Q ss_pred hH
Q psy12605 514 SV 515 (845)
Q Consensus 514 ~v 515 (845)
..
T Consensus 411 ~a 412 (948)
T KOG1058|consen 411 AA 412 (948)
T ss_pred HH
Confidence 43
No 92
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.01 E-value=0.0012 Score=71.51 Aligned_cols=214 Identities=23% Similarity=0.267 Sum_probs=134.7
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..++.++ ..+.+.++..+..|+..+..+-.. -.+|.|..+| .+.++.+|..|+.+|+.+-. +
T Consensus 43 ~~~~~~~-~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l-~d~~~~vr~~a~~aLg~~~~--~-- 104 (335)
T COG1413 43 EAADELL-KLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELL-SDEDPRVRDAAADALGELGD--P-- 104 (335)
T ss_pred hhHHHHH-HHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHh-cCCCHHHHHHHHHHHHccCC--h--
Confidence 3566667 788888899999998887654221 1599999999 57788999999998888853 2
Q ss_pred HHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCC-----------HHHH
Q psy12605 124 TQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP-----------ISFL 191 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-----------~~~~ 191 (845)
..++.|+.+|+ +++..++..|.++|+.+-... .+.+++..+..... ..++
T Consensus 105 -------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 105 -------EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred -------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 37899999999 589999999999999996332 26677777766531 1233
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG 271 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 271 (845)
..+...+..+-. ...++.+..++.+.+.. ++..+..+|..+...
T Consensus 167 ~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~-------------------------vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 167 AAAAEALGELGD-----------PEAIPLLIELLEDEDAD-------------------------VRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHcCC-----------hhhhHHHHHHHhCchHH-------------------------HHHHHHHHHHHhhcc
Confidence 334444433321 22344455555555444 556666666554433
Q ss_pred ChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHH
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFL 349 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 349 (845)
. ..+...+...+.+++..++..++..++.+-.. ...+.+...+.+.+..++..+...+
T Consensus 211 ~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 211 N---------VEAADLLVKALSDESLEVRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred h---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHh
Confidence 2 13345556666666667777776666665221 1334455555555544444443333
No 93
>PRK14707 hypothetical protein; Provisional
Probab=97.99 E-value=0.1 Score=65.11 Aligned_cols=359 Identities=18% Similarity=0.168 Sum_probs=197.6
Q ss_pred HHHHHHhh-ccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 90 LPVLVECL-ERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 90 i~~Lv~lL-~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+..|+.-+ +..++++.+..+...-.-++.. ...+..+ +..+|..++.-++. ++..-..+++..|...-.+....+.
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 44455544 3346667776666666666654 3344434 44566666666655 4444455566655544434444554
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH-HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIV-NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
.+-.. .+-..++.|.+=.+....++++..+. .+..+..-.+. ..-...-..|..+.+-++..
T Consensus 243 ~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~a-l~~q~vanalNalSKwpd~~--------------- 305 (2710)
T PRK14707 243 ELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKA-LDPINVTQALNALSKWADLP--------------- 305 (2710)
T ss_pred hCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHh-cCHHHHHHHHhhhhcCCCch---------------
Confidence 44333 35556666655444455666555555 45443321111 11122333333344445555
Q ss_pred hHHhhhhhHHHHHHHHHHHH-HhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 247 ISKILVSKMKILVDTVWALS-YLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
+-..+...|. .|.+ +.+..+.+ +.-.+...+..|+. ++..+...|..+|..-...++..++.+- .
T Consensus 306 ----------vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~ 372 (2710)
T PRK14707 306 ----------VCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-P 372 (2710)
T ss_pred ----------HHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-h
Confidence 3333333333 3443 44444333 44555556666643 5555666666666655555566666553 3
Q ss_pred CccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.++..+++.+ +.++...-..|+..|..=..++.+..+.+-..|+ ..++..|..= .+..+...++..|.--..++
T Consensus 373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKW----Pd~~~C~~aa~~lA~~la~d 447 (2710)
T PRK14707 373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKW----PDLPICGQAVSALAGRLAHD 447 (2710)
T ss_pred hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcC----CcchhHHHHHHHHHHHHhcc
Confidence 4555555555 5577777777777777765676776665544444 4444444432 36778888888888877888
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
.+.++.+--.+....|-.+-+=++..+...++..|..=..+.++.++.+.-.++...|-.+-+-.+.....+.+.|.-..
T Consensus 448 ~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~r 527 (2710)
T PRK14707 448 TELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAER 527 (2710)
T ss_pred HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 88777666555444444444556777777777777766666666666655444444444433333444555666666665
Q ss_pred hh
Q psy12605 484 LC 485 (845)
Q Consensus 484 L~ 485 (845)
+.
T Consensus 528 l~ 529 (2710)
T PRK14707 528 VV 529 (2710)
T ss_pred hc
Confidence 55
No 94
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.96 E-value=0.00043 Score=74.80 Aligned_cols=267 Identities=15% Similarity=0.149 Sum_probs=161.4
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh--HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL--RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~--r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.|..++++|+++.+.++++|+...+.|+.--..+ -+.+...|.| |.+-|....+ ++.-..+.+++.+.....-..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~yp-EvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYP-EVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccH-HHHHHHHHHHHHHhhhhcccc
Confidence 5777889999999999999999999887321111 1223344432 4556666544 455444444444333221111
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
-.....+++|.|...+++.... +..+....+..++...++.+..---..+.=-|+
T Consensus 682 mqpPi~~ilP~ltPILrnkh~K-------------------------v~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv 736 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQK-------------------------VVANTIALVGTICMNSPEYIGVREWMRICFELV 736 (975)
T ss_pred cCCchhhccccccHhhhhhhHH-------------------------HhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1123578889888888876665 777777777777766665332211113444577
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
..|++.+.+++.+|..++|.++..-.. ..++..|++-|+..+...|....-+++-++...- --.++
T Consensus 737 d~Lks~nKeiRR~A~~tfG~Is~aiGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVl 802 (975)
T COG5181 737 DSLKSWNKEIRRNATETFGCISRAIGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVL 802 (975)
T ss_pred HHHHHhhHHHHHhhhhhhhhHHhhcCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhH
Confidence 888888999999999999999754222 2345556666665555544433333332211110 01245
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
|.|+.-... .+..+|.-...+++.+...-.+.....+ .-..|.|-..|.+.++--|..|...+..++-+++
T Consensus 803 P~lm~dY~T-----Pe~nVQnGvLkam~fmFeyig~~s~dYv-y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 803 PTLMSDYET-----PEANVQNGVLKAMCFMFEYIGQASLDYV-YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHhcccC-----chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 555444333 2567888788888777653322222111 2346777888889999999999999999987654
No 95
>KOG1077|consensus
Probab=97.96 E-value=0.013 Score=64.91 Aligned_cols=416 Identities=14% Similarity=0.118 Sum_probs=214.5
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcC
Q psy12605 94 VECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173 (845)
Q Consensus 94 v~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g 173 (845)
+.+|++...++ +.-.--++.-|-..+.+..+. ++..+.+=|.+.++....-|+.+++|+.+ .+.++.+..
T Consensus 80 V~LLss~kysE-KqIGYl~is~L~n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~-- 149 (938)
T KOG1077|consen 80 VNLLSSNKYSE-KQIGYLFISLLLNENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD-- 149 (938)
T ss_pred HHHhhcCCccH-HHHhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh--
Confidence 78886554444 222222333333333344333 45566777888899999999999999964 356665543
Q ss_pred ChhhHHhhhcC-CCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhH---HHHHHHhhhChhhHH
Q psy12605 174 VVPPLLSFIKP-DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI---YLWLSIIEKNPQISK 249 (845)
Q Consensus 174 ~i~~Lv~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~---~~~~~l~~~~~~~~~ 249 (845)
-|+ ++|.+ +...-++..|+-+|..|.+.. ++.....+....+++++.+.+-.+-. ..+.++...+|+..+
T Consensus 150 DI~---KlLvS~~~~~~vkqkaALclL~L~r~s---pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 150 DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS---PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC---ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 244 44433 334567778888999998875 33444567788888999887755321 122344444443211
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc--cCCchhhHHHHHHHHHHHhcCChh-hHHHHhcCCc
Q psy12605 250 ILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL--SHKEVKVQTASLRAVGNIVTGTDE-QTQVILNCDA 326 (845)
Q Consensus 250 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~v~~~al~~L~nl~~~~~~-~~~~i~~~~~ 326 (845)
. ..--|..-|.++.... | .+ +.++. .-+.|-++...+++|.+.-...+. .+..+. ..
T Consensus 224 ~------~~~~avs~L~riv~~~----------~-t~-~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--ev 283 (938)
T KOG1077|consen 224 T------CLPLAVSRLSRIVVVV----------G-TS-LQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EV 283 (938)
T ss_pred h------hHHHHHHHHHHHHhhc----------c-cc-hhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HH
Confidence 0 0111112222211100 0 00 01111 124566777777777776332222 222221 12
Q ss_pred cchhhHhhcC----Cc---hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 327 LSHFPALLTH----PK---EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 327 l~~L~~lL~~----~~---~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
+..++..... .+ ...+.+.+.-..+++.+.+..-+.+. ..+..|-+++.+ .+..+|.-|...++.+
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~-----rE~NiRYLaLEsm~~L 356 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSH-----RETNIRYLALESMCKL 356 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhc-----ccccchhhhHHHHHHH
Confidence 2333333321 11 12222333333334333222212221 235566666666 3778899999888888
Q ss_pred hcCChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHH
Q psy12605 400 ASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT 478 (845)
Q Consensus 400 ~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~ 478 (845)
++... ....+... .+.++..|+ ..+..+|..|+-.|..++..+ +.+. ++..|+++|...+. .+++..+
T Consensus 357 ~ss~~--s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~------IV~elLqYL~tAd~-sireeiv 425 (938)
T KOG1077|consen 357 ASSEF--SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQ------IVAELLQYLETADY-SIREEIV 425 (938)
T ss_pred Hhccc--hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHH------HHHHHHHHHhhcch-HHHHHHH
Confidence 87522 22222222 677788888 778899999999999998643 2222 35567777765432 3444443
Q ss_pred HHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH---HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 479 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW---LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 479 ~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~---l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
--..-|+.... +++.. ++..+.+|++....-+.+..| +.+..++++.+. -.+++++++|..+.-..
T Consensus 426 lKvAILaEKyA--tDy~W---yVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~------yaak~~fe~Lq~~a~hE 494 (938)
T KOG1077|consen 426 LKVAILAEKYA--TDYSW---YVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQG------YAAKRLFEYLQKPACHE 494 (938)
T ss_pred HHHHHHHHHhc--CCcch---hHHHHHHHHHHhcccccHHHHHHhheeEecchhhhH------HHHHHHHHHHhhhHHHH
Confidence 33333443222 22222 233333444433322333345 334444554433 34667778777654332
Q ss_pred c---cccccccccccccCCChh
Q psy12605 556 S---CQKKQHSIYMCVSPGTDE 574 (845)
Q Consensus 556 ~---~~~~~l~~l~nl~~~~~~ 574 (845)
. +.+..+.-+||++.++++
T Consensus 495 ~mVKvggyiLGEfg~LIa~~pr 516 (938)
T KOG1077|consen 495 NMVKVGGYILGEFGNLIADDPR 516 (938)
T ss_pred HHHHhhhhhhhhhhhhhcCCCC
Confidence 1 223356677888777655
No 96
>KOG0915|consensus
Probab=97.95 E-value=0.0014 Score=78.33 Aligned_cols=213 Identities=15% Similarity=0.212 Sum_probs=115.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
.|+..+..++....+..+.. -..+||+|..+=-+|+..|+.+...++..+..++......... .+++-|+.-|.+..-
T Consensus 976 GaAfGf~~i~~~a~~kl~p~-l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPY-LKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEW 1053 (1702)
T ss_pred chhhchHHHHHHHHHhhhhH-HHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhH
Confidence 34444555554433333332 1246777777778999999999999999998775332222221 355667777778888
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHHHHhhhcccccCChhHHHHH---HHHHHHHhcCChHhHHHHHHcC
Q psy12605 340 KICKEAVWFLSNITAGNQAQVQAVID--AGLLPKIIANLQKVGRIVLRPNLQFEA---AWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a---~~~L~~l~~~~~~~~~~l~~~g 414 (845)
.+|+.+|.+|..+..+.+.. .+.+ ..+...+++.+.+- ...+|..| +.+++.++.
T Consensus 1054 RVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-----KEsVR~aa~~~~~~lsKl~v------------- 1113 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-----KESVREAADKAARALSKLCV------------- 1113 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh-------------
Confidence 99999999999998775432 1211 12233333333331 23444443 333333321
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 494 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~ 494 (845)
++.+..+.. .+-.++.++ -..+++.|++ +.-.++++.+..++..|....+ ..-.
T Consensus 1114 ------r~~d~~~~~---~~~~~l~~i-------LPfLl~~gim---------s~v~evr~~si~tl~dl~Kssg-~~lk 1167 (1702)
T KOG0915|consen 1114 ------RICDVTNGA---KGKEALDII-------LPFLLDEGIM---------SKVNEVRRFSIGTLMDLAKSSG-KELK 1167 (1702)
T ss_pred ------hhcccCCcc---cHHHHHHHH-------HHHHhccCcc---------cchHHHHHHHHHHHHHHHHhch-hhhc
Confidence 111111100 000000000 0111222221 2235778888899999988663 2223
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHHHH
Q psy12605 495 STIIELLPALNILIHHHDTSVSIYLW 520 (845)
Q Consensus 495 ~~~~~~l~~l~~ll~~~d~~v~~~~~ 520 (845)
......+|.|...+...++.|..|+.
T Consensus 1168 P~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred chhhHHHHHHHHHccccchHHHHHHH
Confidence 44456677777777777888877643
No 97
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.92 E-value=0.0049 Score=66.42 Aligned_cols=303 Identities=14% Similarity=0.120 Sum_probs=187.8
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC-CCHHHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTI 214 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 214 (845)
+..++-+++.+++..+.++++.+..+. +.-+.+.+.+.--.++..|..+ ....-|++|...+..+..-.+.... .-
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~--~~ 106 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE--IP 106 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc--CC
Confidence 333444455999999999999999664 5566666666444555666543 3456778899999988876432222 24
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
.+.+..++.+..+++.. .+..|+.+|+.++-.+++ .+..+|++..++..+.+
T Consensus 107 ~~vvralvaiae~~~D~-------------------------lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDR-------------------------LRRICLETLCELALLNPE---LVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHhCCchH-------------------------HHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh
Confidence 57788888888887777 888899999999887764 56788999999999977
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC-------ch--hhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP-------KE--KICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~-------~~--~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
+..++....+.++-.+.. .+..++.+...--+..++.-+.+. +. +.-..+..++..+...-+-..-.-.+
T Consensus 159 ~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 666688888888888854 355566555443345555544332 22 12334444555543332222111112
Q ss_pred c-CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhH------HHHHHcCChHHHHHhh---CC---------
Q psy12605 366 A-GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQT------QEVVAAGAVPLFLRLL---MS--------- 425 (845)
Q Consensus 366 ~-~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~------~~l~~~g~i~~Lv~lL---~~--------- 425 (845)
. .++..|+..|..+ +++++......+..+..- .+.+. ......|-...-.++- ..
T Consensus 238 ~~~~lksLv~~L~~p-----~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~ 312 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLP-----NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS 312 (371)
T ss_pred CchHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc
Confidence 1 4688888888774 678888888888887642 22111 1122222210001111 00
Q ss_pred -CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 426 -PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 426 -~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
...++..+-... .-..+.++|.++.|+++.....+..+.+.+...++.+.
T Consensus 313 ~~~~~l~~~y~aL----------ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 313 SKRPNLVNHYLAL----------LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred cccccHHHHHHHH----------HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 111122111111 22356789999999999998877778888877777654
No 98
>KOG4646|consensus
Probab=97.89 E-value=0.00016 Score=62.77 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=98.7
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+++..||.-.....+.+-+.+...-|.|++.+ |-+-..+.+.+++..++..|..+++.+.+.++..|+|+|.+ +.+.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 45666776665567788899999999999975 66777888999999999999999999999999999999966 67999
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.|.+.+++|.++..++++ +......++.++..|+-+.
T Consensus 94 ~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcc
Confidence 999999999999999887 4567778888888888765
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.89 E-value=0.0014 Score=70.88 Aligned_cols=264 Identities=24% Similarity=0.267 Sum_probs=179.1
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
..++.+++++. +.++.+|..|++.+..+... -++|.+..++.+.++.++..|+.+|+.+-...
T Consensus 43 ~~~~~~~~~l~-~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~----- 105 (335)
T COG1413 43 EAADELLKLLE-DEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDPE----- 105 (335)
T ss_pred hhHHHHHHHHc-CCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCChh-----
Confidence 36888999994 55789999999998887642 38999999999999999999999999985321
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.++.++.++..+.+..++..+.++|..+-.. ..+..+...+.+..... ++... .+..
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~---a~~~~---~~~~ 162 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGS---AAAAL---DAAL 162 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhh---hhhhc---cchH
Confidence 4788888888655778999999999886532 23566666666655331 00000 0000
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
. .++..+...+..+ -+...++.+..++.++...++..|..+|+.+...+ ..+.
T Consensus 163 ~-------~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~ 215 (335)
T COG1413 163 L-------DVRAAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAA 215 (335)
T ss_pred H-------HHHHHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHH
Confidence 0 0333344433322 23356778889998888899999999999987553 2355
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
+.+...+.+.+..+|..++..|+.+-.. ..++.++..+.+. +..++..+...+... .
T Consensus 216 ~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~--~----- 272 (335)
T COG1413 216 DLLVKALSDESLEVRKAALLALGEIGDE-----------EAVDALAKALEDE-----DVILALLAAAALGAL--D----- 272 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-----chHHHHHHHHHhccc--C-----
Confidence 7788888999999999999999887222 2345666666653 445554444444311 0
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 408 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 408 ~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
-......+...+.+....++..+...+..+....
T Consensus 273 ----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 273 ----LAEAALPLLLLLIDEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ----chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc
Confidence 0123455666777777888888888887776544
No 100
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.86 E-value=0.0026 Score=68.51 Aligned_cols=317 Identities=14% Similarity=0.125 Sum_probs=188.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.+. .++-+++.+++-.+.+.+|+++... ...+.+.+.++=-.++.-|..+ .+...|.+|....+.+.... +..+
T Consensus 28 ~~i~-~~lL~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~ 103 (371)
T PF14664_consen 28 ERIQ-CMLLSDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK 103 (371)
T ss_pred HHHH-HHHCCCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence 3444 4555666889999999999998754 3466777777655566666443 34567889999988887541 1111
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.+..|.+..++.+.+++++.++..|+.+|+.++-.+| +.+..+|++..+++.+.++.. ++....+.++..+...+
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~-~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF-SISESLLDTLLYLLDSP 178 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH-hHHHHHHHHHHHHhCCc
Confidence 2345788999999999999999999999999997766 567789999999999987533 47788888888888776
Q ss_pred CCCCCh---hHHhhHHHHHHhhc---ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 206 DPPPSM---STIIELLPALNILI---HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 206 ~~~~~~---~~~~~~l~~L~~ll---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
...+-. ...+..+..+...- ..++.+ + +-...+..++..+-+.-+...-.-
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~---------------~--------~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRE---------------L--------ERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchH---------------H--------HHHHHHHHHHHHHHhcCCceeeee
Confidence 443311 11122222222220 001110 0 023344444544433333222222
Q ss_pred Hhc-CchhhHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHH------hcCCccchhhHhh---cCCchhhHHHHHHH
Q psy12605 280 IDS-GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVI------LNCDALSHFPALL---THPKEKICKEAVWF 348 (845)
Q Consensus 280 ~~~-g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i------~~~~~l~~L~~lL---~~~~~~~~~~a~~~ 348 (845)
.+. ..++.|+..|..+.++++...+..+..+..-. +...... ...|-...-.++- ........... ..
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~ 314 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SK 314 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cc
Confidence 122 56788999999999999999999999986422 2111111 1111110001111 00000000000 00
Q ss_pred HHHhhcCCh-HHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 349 LSNITAGNQ-AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 349 L~nl~~~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
=.++..+.. -....+++.|+++.|+++.... .++.+...|...|+.+.
T Consensus 315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~----~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 315 RPNLVNHYLALLLAILIEAGLLEALVELIESS----EDSSLSRKATLLLGELL 363 (371)
T ss_pred cccHHHHHHHHHHHHHHHcChHHHHHHHHhcC----CCchHHHHHHHHHHHHH
Confidence 001111101 1113357899999999999986 47888888988888764
No 101
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.02 Score=62.03 Aligned_cols=253 Identities=11% Similarity=0.024 Sum_probs=122.4
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
..-.+.+++++.++.++.....++-.++.-.++.- + +...+++=++...+..++..|+..|.....+..
T Consensus 66 lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl---m---~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~t----- 134 (898)
T COG5240 66 LFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL---M---GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGET----- 134 (898)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh---H---HHHHHHHhhccCCccccccHHHHHHHHhcCcch-----
Confidence 34456788888999998888888888876544322 1 234444445555555667777777766554331
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh--cCchhhHH
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID--SGVVPSLI 289 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv 289 (845)
...+-..|.+.+-++.+. +...|+..-.+|--.+.+..+...+ ..++.-+-
T Consensus 135 --v~~~er~l~~a~Vs~~~a-------------------------~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~ 187 (898)
T COG5240 135 --VYDFERYLNQAFVSTSMA-------------------------RRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLK 187 (898)
T ss_pred --hhhHHHHhhhhccccchh-------------------------hhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHh
Confidence 011111222222233222 2223322222232222221111100 01111111
Q ss_pred hhc---------cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc----hhhHHHHHHHHHHhhcCC
Q psy12605 290 PLL---------SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK----EKICKEAVWFLSNITAGN 356 (845)
Q Consensus 290 ~lL---------~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~ 356 (845)
+.= -..++-.+..|++.|..+-..+.. +.-.+++++.... .........+...+...+
T Consensus 188 q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkm---------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n 258 (898)
T COG5240 188 QFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKM---------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN 258 (898)
T ss_pred hCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHH---------HHHHHHHHhhcccccccchhheehHHHHHHHHHhC
Confidence 110 012234567788888877543221 1122344443321 111111122233332333
Q ss_pred hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC--hHhHHHHHHcCChHHHHHhhCCCCHHHHHHH
Q psy12605 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT--SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 434 (845)
Q Consensus 357 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a 434 (845)
++...+ ..|.|-.++.+. -..+..+++.+++.++..+ ++... ..+..|-.+|.++....|-.|
T Consensus 259 ~q~~~q-----~rpfL~~wls~k-----~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~rv~~rFsA 323 (898)
T COG5240 259 SQALLQ-----LRPFLNSWLSDK-----FEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKSTRVVLRFSA 323 (898)
T ss_pred hHHHHH-----HHHHHHHHhcCc-----chhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcchHHHHHHH
Confidence 332222 234555555542 4678888998888877532 11111 245667777888888888888
Q ss_pred HHHHHHhhcCCh
Q psy12605 435 VWALGNIIGDGP 446 (845)
Q Consensus 435 ~~~L~nl~~~~~ 446 (845)
++.|..++...|
T Consensus 324 ~Riln~lam~~P 335 (898)
T COG5240 324 MRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHhhCC
Confidence 888888886554
No 102
>KOG2973|consensus
Probab=97.83 E-value=0.0025 Score=63.79 Aligned_cols=302 Identities=16% Similarity=0.176 Sum_probs=172.8
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH--HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 91 PVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV--AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 91 ~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~--~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
--++++| ++.+|.+|..|...+..+... ..+.+. +.-.++.+.+++....+ .+.|+.+|.|++.+ +..|+.
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKK 78 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHH
Confidence 3568888 678999999999988888754 222222 23478889999988877 78999999999965 568888
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcc-cCCchhhHHHHHHHhhhChhh
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH-HHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~~~~~~ 247 (845)
+.+. .+..++..+-++.. .+-..++..|+|+++..+.... +..-+. +.+ ...+.+....+..+-.
T Consensus 79 ll~~-~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~----------ll~~~~~~~~-~~lm~l~~~~~d~~~n- 144 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAA----------LLTNLTEKKD-SGLMRLARAFCDKSYN- 144 (353)
T ss_pred HHHH-HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHH----------HHHhcccccc-cchHHHHHHHhCcccc-
Confidence 8876 66777777766633 5777889999999987632111 111111 001 1111111111110000
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch--hhHHhhccCCchhhHH-HHHHHHHHHhcCChhhHHHHhcC
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV--PSLIPLLSHKEVKVQT-ASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~Lv~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
.-.-..+.+..++++++.... +..+.+...+ +.+..+-. .+..+|. ..+++|.|+|.+...... +++.
T Consensus 145 ------~~a~f~ylA~vf~nls~~~~g-R~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e 215 (353)
T KOG2973|consen 145 ------AYAEFHYLAPVFANLSQFEAG-RKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDE 215 (353)
T ss_pred ------cccchhHHHHHHHHHhhhhhh-hhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-Hhcc
Confidence 000223455556667665433 3444444422 23333333 4555554 567899999887544322 3322
Q ss_pred --CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 325 --DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 325 --~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
..+|.|+.-+..+. +. +..+ -..+|.=++++......+.++.++..-..++.-++..
T Consensus 216 ~~~lLp~iLlPlagpe-e~-------------sEEd-------m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT 274 (353)
T KOG2973|consen 216 SINLLPAILLPLAGPE-EL-------------SEED-------MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT 274 (353)
T ss_pred hHHHHHHHHhhcCCcc-cc-------------CHHH-------HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh
Confidence 23333333332221 00 0011 1123443478875555557899999999998888864
Q ss_pred ChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcC
Q psy12605 403 TSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 403 ~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~ 444 (845)
. ..+..+.+.|+-+.+-.+=. .++++++..+-...--+...
T Consensus 275 ~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 275 R-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred h-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 3 45666777776666555444 35677777666555444443
No 103
>KOG1943|consensus
Probab=97.81 E-value=0.0095 Score=69.32 Aligned_cols=267 Identities=16% Similarity=0.119 Sum_probs=156.8
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
++++.|+..|++.+..++-.|+..++.++...| . .+.+ .+|..++++++...+......++-+|+.++...=- .
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL--l 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL--L 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc--c
Confidence 688899999999999999999999999998776 2 2222 24667777776665567777899999999986522 2
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCchhhHH
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVPSLI 289 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv 289 (845)
.......+|.+.+.+.-++...++ .. ...++..||..+..+++... ...+.+.+.=.-..|+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~-------s~----------G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~ 477 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQH-------SV----------GQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLI 477 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhccc-------cc----------ccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHH
Confidence 223557778877766543322000 00 01155555544444444322 2122222221122334
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC---chhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP---KEKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
..+-+++..+|.+|..++...... .|-+|.=+.+.++. .-..|.++...++.-.+..+.....+++.
T Consensus 478 ~AlFDrevncRRAAsAAlqE~VGR----------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~ 547 (1133)
T KOG1943|consen 478 VALFDREVNCRRAASAALQENVGR----------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH 547 (1133)
T ss_pred HHhcCchhhHhHHHHHHHHHHhcc----------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH
Confidence 444677888999998888876532 12223223333322 22334444444443333333333333322
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
-+...+ .+ =+..+++.++++|.+++...++ ....+..+.++....+.+...+.-+..+.+.+..
T Consensus 548 L~t~Kv-----~H----Wd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 548 LLTKKV-----CH----WDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHhccc-----cc----ccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 111111 11 2678999999999998765543 3345678888888889999888877777766654
No 104
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.79 E-value=5e-05 Score=63.91 Aligned_cols=88 Identities=25% Similarity=0.365 Sum_probs=71.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
||.|++.|..++++.+|..|+++|+.+.. + .++|.|+++++++++.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 68899999668889999999999996532 2 369999999999999999999999999841
Q ss_pred HhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 170 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
..+++.|.+++.++.+..++..|+++|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1268889999988767677888888774
No 105
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.76 E-value=5.2e-05 Score=53.06 Aligned_cols=41 Identities=41% Similarity=0.776 Sum_probs=37.9
Q ss_pred ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 403 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++.++.+++.|+++.|+++|.+++++++..|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35778899999999999999999999999999999999973
No 106
>KOG1943|consensus
Probab=97.75 E-value=0.024 Score=66.22 Aligned_cols=384 Identities=13% Similarity=0.116 Sum_probs=206.1
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
..+.-++.++ .++++.|..++..|++-+.++-+..+...++. ++...+.++...+++..-..|+-+|+.+|...
T Consensus 338 ivE~vie~Ll-s~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 338 IVEFVIEHLL-SALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHH-HhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 3445567777 88999999999999999999877553222233 46666777755555667779999999998643
Q ss_pred hhhHHHHHHcCChHHHHHhhCC--------CChhHHHHHHHHHHHhcCCChh--hHHHHHhcCChhhHHhhhcCCCCHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMS--------PHSNVCEQAVWALGNIIGDGPQ--LRDYVINMGVVPPLLSFIKPDIPISF 190 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s--------~~~~v~~~a~~~L~nla~~~~~--~r~~i~~~g~i~~Lv~ll~~~~~~~~ 190 (845)
--.-..+. .++|.+++-|.- ....+|+.|+.+.+.++..... .+. +.+ .....|+-..--+.+..+
T Consensus 412 lLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 412 LLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREVNC 487 (1133)
T ss_pred CcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchhhH
Confidence 21111222 366777766642 2457899999999888754321 111 111 011222211122346789
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH-Hhh
Q psy12605 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS-YLT 269 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~-~l~ 269 (845)
|++|..++-.......+.+. +++.+ .....-... .+.++-..+. .++
T Consensus 488 RRAAsAAlqE~VGR~~n~p~------Gi~Li-s~~dy~sV~-------------------------~rsNcy~~l~~~ia 535 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPH------GISLI-STIDYFSVT-------------------------NRSNCYLDLCVSIA 535 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCC------chhhh-hhcchhhhh-------------------------hhhhHHHHHhHHHH
Confidence 99998888765543222211 11111 000000000 2222222221 112
Q ss_pred cCChhhHHHHHhcCchhhHHhh-ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHH
Q psy12605 270 DGGNDQIQMVIDSGVVPSLIPL-LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348 (845)
Q Consensus 270 ~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 348 (845)
.. +...+. ++..++.- +.+-+..+++.+..+|..++...+. ......++.+++...+++...|..+..+
T Consensus 536 ~~-~~y~~~-----~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la 605 (1133)
T KOG1943|consen 536 EF-SGYREP-----VFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLA 605 (1133)
T ss_pred hh-hhHHHH-----HHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHH
Confidence 11 111122 22333322 4566889999999999998755332 3334678888888888887777766665
Q ss_pred HHHhhcCChHHH---HHHHh---cC---ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHH
Q psy12605 349 LSNITAGNQAQV---QAVID---AG---LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419 (845)
Q Consensus 349 L~nl~~~~~~~~---~~l~~---~~---~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L 419 (845)
.+.+........ ..+.+ ++ .++.+..--...+ ...-.+...+..+..+...........+-.+.-..+
T Consensus 606 ~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg---~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll 682 (1133)
T KOG1943|consen 606 AGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG---QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLL 682 (1133)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc---hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 555543222111 11111 11 2222222111111 122344455666666665665555566666666677
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC----CChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM----GVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 420 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
.+.+..++ .++..+.++++.++... ...+. ..+...+..+.+...+.+++-..-++.+++
T Consensus 683 ~~~l~~~n-~i~~~av~av~~l~s~y-----~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 683 AQNLTLPN-QIRDAAVSAVSDLVSTY-----VKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred HHhhcchH-HHHHHHHHHHHHHHHHH-----HhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 77775555 89999999999887521 01111 123344444444444444554555555554
No 107
>KOG0211|consensus
Probab=97.74 E-value=0.012 Score=68.39 Aligned_cols=359 Identities=15% Similarity=0.135 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc
Q psy12605 104 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 183 (845)
Q Consensus 104 ~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~ 183 (845)
..+..+..-+.+++..-.+.+. ...++|.+-..+ ....++...++.-++++.... ...+ .. +.+.+....+.
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v-~~~~-~~--~~ll~~le~l~ 168 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDV-GGPE-YA--HMLLPPLELLA 168 (759)
T ss_pred hhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhc-cchh-HH--HHhhHHHHhhh
Confidence 4455555666666542222222 234788888888 677788888888888887542 1111 11 11222222232
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHH
Q psy12605 184 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVW 263 (845)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~ 263 (845)
......++..++-.+...+..... . ......+|.+.++...+--+ .+..+|.
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~-~--~~~~~lv~l~~~l~~~d~~~-------------------------sr~sacg 220 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPK-E--KLREHLVPLLKRLATGDWFQ-------------------------SRLSACG 220 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCh-H--HHHHHHHHHHHHccchhhhh-------------------------cchhhhh
Confidence 232445677788888777665421 1 12344555554444431111 3334555
Q ss_pred HHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHH
Q psy12605 264 ALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICK 343 (845)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~ 343 (845)
..........+ ..++....+..-++-.+..+.++.++..-+++++..-+ +.....+.++.+.++..+....+|.
T Consensus 221 lf~~~~~~~~~---~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~ 294 (759)
T KOG0211|consen 221 LFGKLYVSLPD---DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVRE 294 (759)
T ss_pred hhHHhccCCCh---HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHH
Confidence 55544433221 22344455566666678888999999999999975432 2555668899999999988889999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh
Q psy12605 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 423 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL 423 (845)
.|...+.++...-.... =....+.+.+++...+. ++.++.........+... ...........+....++
T Consensus 295 ~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~-----~~~v~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~~l~ 364 (759)
T KOG0211|consen 295 AAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDG-----SWRVSYMVADKFSELSSA---VGPSATRTQLVPPVSNLL 364 (759)
T ss_pred HHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcCh-----hHHHHHHHhhhhhhHHHH---hccccCcccchhhHHHHh
Confidence 88887777643211110 12234667777777664 566666555444444321 000111123466677778
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHH
Q psy12605 424 MSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLP 502 (845)
Q Consensus 424 ~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~ 502 (845)
.+...+++...+.-...++.. +..+...+.....++.+-.+..+.. ..+....+..+.++ .+..+....+...+|
T Consensus 365 ~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~---~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 365 KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGL---SPILPKERTISELLP 440 (759)
T ss_pred cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhcccccc---CccCCcCcCccccCh
Confidence 777777777666555555432 1111222223333444443333222 12222222222222 211222344455677
Q ss_pred HHHHhhcCCChhHHHH
Q psy12605 503 ALNILIHHHDTSVSIY 518 (845)
Q Consensus 503 ~l~~ll~~~d~~v~~~ 518 (845)
.+...+++.++.|+.+
T Consensus 441 ~~~~~l~de~~~V~ln 456 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLN 456 (759)
T ss_pred hhhhhcchhhHHHHHh
Confidence 7777777777777654
No 108
>KOG4646|consensus
Probab=97.65 E-value=0.00069 Score=59.00 Aligned_cols=131 Identities=19% Similarity=0.137 Sum_probs=104.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+..+|-+.-+..+.+.+.+.+..|.++.... .+...+.+.++++..+..| ..++..+...+...|+|+|-+ +.+++
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP--~Nys~Lrql~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDP--INYSHLRQLDVLDLFVDSL-EEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCc--chHHHHHHhhHHHHHHHHh-hcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 4455523345667788888888887765432 4577888999999999999 577888999999999999964 78999
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHh
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ 180 (845)
.+++++++|.++..++++.+...-.|+.++..++......|+.+....++..+.+
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 9999999999999999999999999999999999777667777765444444443
No 109
>PRK14707 hypothetical protein; Provisional
Probab=97.64 E-value=0.39 Score=60.29 Aligned_cols=404 Identities=16% Similarity=0.096 Sum_probs=211.4
Q ss_pred cHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHH-HHhcCChh
Q psy12605 45 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALT-NIASGTSA 122 (845)
Q Consensus 45 ~i~~lv~~~l~~-~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~-~la~~~~~ 122 (845)
+|-.++ +.+.. +|.....+|+..|...+.... .....+-..|+-..|-.+-+..+.+. ...|+..|. .++. .+.
T Consensus 206 ~ia~~l-Na~sKWp~~~~c~~aa~~la~~l~~~~-~l~~~~~~q~va~~lN~lsKwp~~~~-C~~a~~~lA~rl~~-~~~ 281 (2710)
T PRK14707 206 GVATVL-NALCKWPDTPDCGNAVSALAERLADES-RLRNELKPQELGNALNALSKWADTPV-CAAAASALAERLVD-DPG 281 (2710)
T ss_pred HHHHHH-HHHhcCCCChhHHHHHHHHHHHHcCcH-HHHHhCChHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHhh-hHH
Confidence 344444 44432 344445556666666655442 22333334455555555555444444 444444444 4553 355
Q ss_pred hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHH-HHHh
Q psy12605 123 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV-IVNL 201 (845)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~-L~~l 201 (845)
.++.+-..++-..|-.+-+=++..+...|+..|..=-.++++.++.+-.. .+...++.|++=.+..+.+.|+.. -..+
T Consensus 282 l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 282 LRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred HHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 55555444444444444445677777777766665444667666544322 344555566543333455544444 4456
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+.+.+..+.+. ..++-..|..+.+=++.. .-..++..|+.=...+.+..+.+ +
T Consensus 361 ~~d~~l~~~l~-~q~~a~~lNalsKWp~~~-------------------------~c~~aa~~LA~~l~~d~~l~~~~-~ 413 (2710)
T PRK14707 361 VADPELRKDLE-PQGVSSVLNALSKWPDTP-------------------------VCAAAASALAEHVVDDLELRKGL-D 413 (2710)
T ss_pred ccCHhhhcccc-hhHHHHHHhhhhcCCCch-------------------------HHHHHHHHHHHHhccChhhhhhc-c
Confidence 66554444332 344444454444445555 44445555544333455555555 5
Q ss_pred cCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 282 SGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 282 ~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
...+..++..| +=++..+...+...|.--..++.+.++.+--.++...|-.+-+.+|..+-.++...|..=..+.++..
T Consensus 414 ~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~ 493 (2710)
T PRK14707 414 PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLR 493 (2710)
T ss_pred hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHH
Confidence 55555556666 44677788888888887777777766665544544444444466888888778777776556666654
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
+.+--.++...| ..|..-+ +.+.-...+.|+-..+... ....+.+...+....+-.+-+.++......++..|..
T Consensus 494 ~a~~~q~~~~~L-~aLSK~P---d~~~c~~A~~~lA~rl~~~-~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~ 568 (2710)
T PRK14707 494 KALKPQEVVIAL-HSLSKWP---DTPICAEAASALAERVVDE-LQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAE 568 (2710)
T ss_pred hhcCHHHHHHHH-HHhhcCC---CcHHHHHHHHHHHHHhccc-hhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHH
Confidence 444323333333 3333321 3344444455555555422 1122222222222333333345666677777777777
Q ss_pred hhcCChHHHHHHHhCCChHHHHhccCCCCC-hhHHHHHHHHHHHhhc
Q psy12605 441 IIGDGPQLRDYVINMGVVPPLLSFIKPDIP-ISFLRNVTWVIVNLCR 486 (845)
Q Consensus 441 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~-~~~~~~~~~~l~nL~~ 486 (845)
...+.+..+..+- .-.+..++..|+.-.+ ......+.|.-..+..
T Consensus 569 ~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~ 614 (2710)
T PRK14707 569 RLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLVD 614 (2710)
T ss_pred HhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Confidence 6666666665554 3345666666654433 3444444554444443
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.60 E-value=0.015 Score=64.70 Aligned_cols=254 Identities=17% Similarity=0.099 Sum_probs=163.1
Q ss_pred HHHHHhcCCHHHHHHhh---------ccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC-----Chh
Q psy12605 81 IEALIHSGILPVLVECL---------ERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP-----HSN 146 (845)
Q Consensus 81 ~~~i~~~g~i~~Lv~lL---------~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~-----~~~ 146 (845)
.+.+.....+..|.++- ....++.+..+|+.||+|+...++..+..+++.|..+.++..|+.. +.+
T Consensus 15 ~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d 94 (446)
T PF10165_consen 15 LDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSD 94 (446)
T ss_pred chhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChh
Confidence 34444444555555554 3346778999999999999999899999999999999999999887 788
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHhc-CChhhHHhhhcC---------C-------CCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 147 VCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIKP---------D-------IPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 147 v~~~a~~~L~nla~~~~~~r~~i~~~-g~i~~Lv~ll~~---------~-------~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
+.-...+.|.-++...++.+..+++. +++..++..+.. . .+......+..++.|+........
T Consensus 95 ~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~ 174 (446)
T PF10165_consen 95 VEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSV 174 (446)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCccc
Confidence 89999999999998888888887755 777777766521 0 133445567888888877664333
Q ss_pred C---hhHHhhHHHHHHhhc---ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh--------
Q psy12605 210 S---MSTIIELLPALNILI---HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ-------- 275 (845)
Q Consensus 210 ~---~~~~~~~l~~L~~ll---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-------- 275 (845)
. ......++..+..++ ....+. ......+..+|.++--.....
T Consensus 175 ~~~~~~~~~~l~~il~~~l~~~~~~~~l-----------------------~~~~~~~in~L~nlpl~~~~~l~~~~~~~ 231 (446)
T PF10165_consen 175 PEEFSPSIPHLVSILRRLLPPPPSSPPL-----------------------DPPHSHAINALLNLPLECLDSLLSPKFQQ 231 (446)
T ss_pred chhhhHHHHHHHHHHHHHhccCCCCCcc-----------------------hhhHHHHHHHHhCCChHHHhhhhcccCCc
Confidence 2 222233444444442 111111 014455556665542111110
Q ss_pred ---HHHHHhcCchhhHHhhccC--------CchhhHHHHHHHHHHHhcCChhhHHHHhc----------------CCccc
Q psy12605 276 ---IQMVIDSGVVPSLIPLLSH--------KEVKVQTASLRAVGNIVTGTDEQTQVILN----------------CDALS 328 (845)
Q Consensus 276 ---~~~~~~~g~i~~Lv~lL~~--------~~~~v~~~al~~L~nl~~~~~~~~~~i~~----------------~~~l~ 328 (845)
.........+..|+.+|+. .-.....+.+.+|.+++..+...++.+.. ...-.
T Consensus 232 ~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 232 SSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 0001122456667777621 11357778888999998876665554432 12345
Q ss_pred hhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 329 HFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 329 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
.|++++.+..+.+|..+...|..+|..+.
T Consensus 312 rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 312 RLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 78888888888889888888888865543
No 111
>KOG1058|consensus
Probab=97.57 E-value=0.094 Score=58.97 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=118.8
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
..+|.+...|.+.+..||.+|.-++..+-...++ ++. .+-..+-..| ...|+..+++|...|... +++.
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er-- 203 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LIP-DAPELIESFLLTEQDPSCKRNAFLMLFTT---DPER-- 203 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hcC-ChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH--
Confidence 3456666777899999999999999988654222 111 1122233333 456888888888777764 2221
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
.+..|.....+-+. -++.++......+...+-.++... ...+..+..+|.++++.|+..|+.+|.++
T Consensus 204 ------Al~Yl~~~idqi~~--~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 204 ------ALNYLLSNIDQIPS--FNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred ------HHHHHHhhHhhccC--ccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 12222222222110 134555555555555554444332 23567889999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH
Q psy12605 442 IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 520 (845)
Q Consensus 442 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~ 520 (845)
+.+....+.+ ...+++++...++-.++.-...-|..+.. .....+.+.+--+.+++.+.|-++..-++
T Consensus 271 S~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~-----~~~~il~~l~mDvLrvLss~dldvr~Ktl 338 (948)
T KOG1058|consen 271 SNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKA-----LHEKILQGLIMDVLRVLSSPDLDVRSKTL 338 (948)
T ss_pred cCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhh-----hhHHHHHHHHHHHHHHcCcccccHHHHHH
Confidence 8776544432 34455555443332333332233333321 12245566666777888888888877655
No 112
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.57 E-value=0.064 Score=59.58 Aligned_cols=348 Identities=15% Similarity=0.183 Sum_probs=192.4
Q ss_pred HHHHHHHHcCCCh---HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 47 DMLVVEAARKDNP---ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 47 ~~lv~~~l~~~~~---~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
|.++ +.|.+++. ......+..|..++... ...+.++- .++..|-..++...+.+....++.+|..+.....+.
T Consensus 2 p~ll-~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 2 PALL-ALLPDSDSSTDSNYERILEALAALSTSP--QILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred chHH-hhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3455 66666554 55666788888776543 23333322 445555555543345667777788888776533222
Q ss_pred H-----HHHHHcCChHHHHHhhCCC-------ChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhc-------
Q psy12605 124 T-----QEVVAAGAVPLFLRLLMSP-------HSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIK------- 183 (845)
Q Consensus 124 ~-----~~i~~~g~i~~L~~lL~s~-------~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~------- 183 (845)
. ....+...+|.+.++.-.. ++.+-+.+...++.+....+. .++.+.+ .+..+..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~~~~~~ 152 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSPKSFSP 152 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHccccccCC
Confidence 2 2334445788888876332 245555566666655544332 2222222 2222111
Q ss_pred ----CC----CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 184 ----PD----IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 184 ----~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
.. .+.....-..++++.+-++. ........+..+..+..+ .++.
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~----~~~~~~~ll~~l~~~~~~~~~~~----------------------- 205 (415)
T PF12460_consen 153 FQPSSSTISEQQSRLVILFSAILCSLRKDV----SLPDLEELLQSLLNLALSSEDEF----------------------- 205 (415)
T ss_pred CCccccccccccccHHHHHHHHHHcCCccc----CccCHHHHHHHHHHHHHcCCChH-----------------------
Confidence 00 01112222223333333222 222233466666665543 3333
Q ss_pred HHHHHHHHHHHHHhhcCC--hhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcC----ChhhHHHHhcCCcc
Q psy12605 255 MKILVDTVWALSYLTDGG--NDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTG----TDEQTQVILNCDAL 327 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~----~~~~~~~i~~~~~l 327 (845)
.+..++.+++-+...- .+..+ .++..+...+ .......+..++..+..++++ .+.... ..+
T Consensus 206 --~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~ 273 (415)
T PF12460_consen 206 --SRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELL 273 (415)
T ss_pred --HHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHH
Confidence 6667777777776542 11111 2233333333 334555666666666666532 111111 245
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCChH--------HHHHHHhc----CChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQA--------QVQAVIDA----GLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--------~~~~l~~~----~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
..|+.++.+ +++...++..+.-+....++ .++.+... .++|.|++..+.. +...+.....+
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-----~~~~k~~yL~A 346 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-----DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-----ChhhHHHHHHH
Confidence 667777776 56677777777777655222 22333333 3567777777664 44588888999
Q ss_pred HHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 396 L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
|.++..+-|...-.---...+|.+++.|+.++.+++..++.+|..+..+.++..
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 999998877544333334578999999999999999999999999998876543
No 113
>KOG2259|consensus
Probab=97.56 E-value=0.004 Score=68.35 Aligned_cols=283 Identities=16% Similarity=0.126 Sum_probs=172.8
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHH---HHHhhcCC--CCCCC
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV---IVNLCRNK--DPPPS 210 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~---L~~l~~~~--~~~~~ 210 (845)
|..+..+.+..++.+|+.+|-.++. .-..-+.+ -...++.+..+ ...+|..|+.+ ..|.+-.. .....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~-----Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKAC-----YSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cccccHHH-----HHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 6666667777777777777777664 22233332 23455666665 55788887554 45555211 12223
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhh---hChh-hHHhhhhhHH-------HHHHHHHHH-HHh---------h
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIE---KNPQ-ISKILVSKMK-------ILVDTVWAL-SYL---------T 269 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~---~~~~-~~~~~~~~~~-------~~~~a~~~L-~~l---------~ 269 (845)
......++..++..+.+.+..+++.+++.+.. .+.+ +.+++..+.- .....-..+ +.- +
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 34556788888899998888888888866532 2222 2232222200 000000011 111 0
Q ss_pred ----cCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHH
Q psy12605 270 ----DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345 (845)
Q Consensus 270 ----~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a 345 (845)
+..++.-.-++..|.+..++..|.++--+|+.+|...++.|+..++.... ..+..|++++++....+|..|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 01111223456778999999999998899999999999999988776544 356889999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 346 ~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
..+|..++.+ ..++++-++.+...|.+. +.+++.+.-..|.+.-..+.+..... +..|+..|.
T Consensus 431 i~aL~~Is~~------l~i~eeql~~il~~L~D~-----s~dvRe~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~- 493 (823)
T KOG2259|consen 431 IFALTMISVH------LAIREEQLRQILESLEDR-----SVDVREALRELLKNARVSDLECIDMC-----VAHLLKNLG- 493 (823)
T ss_pred HHHHHHHHHH------heecHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhh-
Confidence 9999998655 224566788888999884 78888887777766533332221111 122222221
Q ss_pred CCHHHHHHHHHHHHHhhcCChH
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQ 447 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~ 447 (845)
.-|.-+.....|++.+..+...
T Consensus 494 kyPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 494 KYPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred hCCCCcHHHHHHHHHHhccChh
Confidence 1222344556677777776544
No 114
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.50 E-value=0.0032 Score=63.06 Aligned_cols=259 Identities=12% Similarity=0.137 Sum_probs=154.7
Q ss_pred HcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhHHHHHH-cC
Q psy12605 54 ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQTQEVVA-AG 131 (845)
Q Consensus 54 l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g 131 (845)
.+.=++-.++.|+.++..+.-..+...+.+. +...-.+++++++.. ...++|+..+.+++.+.. +++.++.+-. ..
T Consensus 158 ~Q~i~~lTrlfav~cl~~l~~~~e~R~i~wa-entcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~d 235 (432)
T COG5231 158 SQLIDFLTRLFAVSCLSNLEFDVEKRKIEWA-ENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 3444555677777777665443222111222 555678888998544 457899999999999975 3566533322 35
Q ss_pred ChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChh--hHHHHHhcCChhhHHhhhcC-C-CCHHHHHHHHHHHHHhhcCCC
Q psy12605 132 AVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQ--LRDYVINMGVVPPLLSFIKP-D-IPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 132 ~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~--~r~~i~~~g~i~~Lv~ll~~-~-~~~~~~~~a~~~L~~l~~~~~ 206 (845)
.+.-|+++.++. .+++-.-++.++.|++..+|. ....+...+ +.+-++.|.. . .+++++.-.-.+=+.+-.+.
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~- 313 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNT- 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh-
Confidence 777788887764 567778899999999864432 222333322 3344444432 2 24444443333333333222
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc--Cc
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS--GV 284 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~ 284 (845)
+........+..|-.-+-+-+|. -...-.| ..+..++.+. .+
T Consensus 314 --k~l~~fD~Y~~ELdsg~l~wSp~-------------------------H~~~dFW---------s~N~d~l~kdny~i 357 (432)
T COG5231 314 --KKLCIFDNYLNELDSGRLEWSPY-------------------------HHKKDFW---------STNLDMLIKDNYEI 357 (432)
T ss_pred --hhhhHHHHHHHHHhhCcccCCCc-------------------------ccccCch---------hhhHHHHhhhhHHH
Confidence 11112222333332222111111 0111112 1223333333 46
Q ss_pred hhhHHhhccCCchh-hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 285 VPSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 285 i~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
+..|.++++..++. ....|+.=|+.+....++....+...|+-..++++++++|++++-+|+.++.-+
T Consensus 358 ~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 358 VKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 78889999777665 566788889999988899999999999999999999999999999999888765
No 115
>KOG2259|consensus
Probab=97.47 E-value=0.031 Score=61.75 Aligned_cols=250 Identities=15% Similarity=0.139 Sum_probs=159.5
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
..+..-+..+..+.|.. ++..|+..|..|.++..- ..-.....++++.+
T Consensus 197 ~~~~~~l~~~~~~~D~~-------------------------Vrt~A~eglL~L~eg~kL------~~~~Y~~A~~~lsD 245 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFR-------------------------VRTHAVEGLLALSEGFKL------SKACYSRAVKHLSD 245 (823)
T ss_pred HHHHHHHHHHhcCCCcc-------------------------hHHHHHHHHHhhcccccc------cHHHHHHHHHHhcc
Confidence 34444466667777777 888888888877763221 22346788999999
Q ss_pred CchhhHHHHHHHH---HHHhcCCh---hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCC
Q psy12605 295 KEVKVQTASLRAV---GNIVTGTD---EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGL 368 (845)
Q Consensus 295 ~~~~v~~~al~~L---~nl~~~~~---~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~ 368 (845)
.+..|+.+|++++ +|.+-... .....+.+ .++..+-..+.+.+-.+|..|+.+|+.+-..+...+.+..+..+
T Consensus 246 ~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKl 324 (823)
T KOG2259|consen 246 DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKL 324 (823)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHH
Confidence 9999999997655 45542111 11122222 36677888888888999999999999986666555555554444
Q ss_pred hHHHHHHhhhcccccCChhHHHHHHHHHHH--HhcC-----------ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHH
Q psy12605 369 LPKIIANLQKVGRIVLRPNLQFEAAWALTN--IASG-----------TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 435 (845)
Q Consensus 369 i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~--l~~~-----------~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~ 435 (845)
+..+-+.=..+ ........+ ..+| ..+....++.+|+.-.+++-++++-.+||.+|+
T Consensus 325 ms~lRRkr~ah----------krpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 325 MSRLRRKRTAH----------KRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred hhhhhhhhhcc----------cchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence 33221111110 000111111 1111 123355688899999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 436 WALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 436 ~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
..++.++..+|..... .+.-|+++++++. ..++..++.++.-++.+- ..-.+.++.+...+.+...++
T Consensus 395 ~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~-~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dv 462 (823)
T KOG2259|consen 395 ASLCSLATSSPGFAVR-----ALDFLVDMFNDEI-EVVRLKAIFALTMISVHL------AIREEQLRQILESLEDRSVDV 462 (823)
T ss_pred HHHHHHHcCCCCcHHH-----HHHHHHHHhccHH-HHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHH
Confidence 9999999988876543 3566777776544 366677888888777553 122445666666666666666
Q ss_pred HHH
Q psy12605 516 SIY 518 (845)
Q Consensus 516 ~~~ 518 (845)
+..
T Consensus 463 Re~ 465 (823)
T KOG2259|consen 463 REA 465 (823)
T ss_pred HHH
Confidence 654
No 116
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.44 E-value=0.0014 Score=66.36 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=115.7
Q ss_pred cCCChHHHHHHHHHHHHHHcCC-CCccHHHHHh--cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC
Q psy12605 55 RKDNPELQLLAVQSARKLLSSD-KNPPIEALIH--SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG 131 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~-~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g 131 (845)
.+.|.+.+..|+..|+.++..+ .......+.. ..+++.++..+. +....+...|+.++..++..-.......+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 6678999999999999998866 1222333322 266777788873 55667889999999999875444444443 35
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC-CCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP-PPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 210 (845)
.+|.|++.+.++..-+++.|..+|..++...+...+.+ ++.+.....+. +..+|..++..+..+....+. ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence 89999999999999999999999999997654112111 34444555555 458888888888888776641 111
Q ss_pred h---hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh
Q psy12605 211 M---STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND 274 (845)
Q Consensus 211 ~---~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 274 (845)
+ .....+.+.+.+++.+.+++ ++..|-.++..+....++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~-------------------------VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPE-------------------------VREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HH-------------------------HHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHH-------------------------HHHHHHHHHHHHHHHCCH
Confidence 1 12356888889999999998 788777777766554443
No 117
>KOG4535|consensus
Probab=97.43 E-value=0.024 Score=60.10 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=76.4
Q ss_pred HHcCCChHHHHHHHHHHHHHHcCCCC-------------ccHHHHHhcC---CHHHHHHhhccCCChhHHHHHHHHHHHH
Q psy12605 53 AARKDNPELQLLAVQSARKLLSSDKN-------------PPIEALIHSG---ILPVLVECLERSDRPNLQFEAAWALTNI 116 (845)
Q Consensus 53 ~l~~~~~~~~~~a~~~l~~ll~~~~~-------------~~~~~i~~~g---~i~~Lv~lL~~~~~~~i~~~a~~~L~~l 116 (845)
.|+++++.++--|+..+..++...+. .+...++.+. .-..|+..|..+..+.+..++..+|.++
T Consensus 55 ~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~l 134 (728)
T KOG4535|consen 55 TLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANL 134 (728)
T ss_pred ecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 56788888888888877776653210 1122233332 3445666776667778889999999999
Q ss_pred hcCChhhHHHHH-HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 117 ASGTSAQTQEVV-AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 117 a~~~~~~~~~i~-~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.+..+-++..+- -...+..+-+++++.|+.++..++-.++.|.+.+
T Consensus 135 v~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 135 VSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 987776654422 1346677777888999999999999999887654
No 118
>KOG2734|consensus
Probab=97.43 E-value=0.025 Score=59.54 Aligned_cols=233 Identities=11% Similarity=0.146 Sum_probs=159.0
Q ss_pred cHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC---------hhhHHHHHHcCChHHHHHhhCCCChhH---
Q psy12605 80 PIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT---------SAQTQEVVAAGAVPLFLRLLMSPHSNV--- 147 (845)
Q Consensus 80 ~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~---------~~~~~~i~~~g~i~~L~~lL~s~~~~v--- 147 (845)
....+++.+.++.|+++| .++|.++-...+..|..+...+ .....++++.++++.|++.++.=++.+
T Consensus 117 LYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkee 195 (536)
T KOG2734|consen 117 LYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEE 195 (536)
T ss_pred HHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhh
Confidence 456788999999999999 4678899999999999887422 134567888999999999887554444
Q ss_pred ---HHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhh-cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHh
Q psy12605 148 ---CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 223 (845)
Q Consensus 148 ---~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 223 (845)
...++..+-|+..-.+++...+++.|.+..|+.-+ ....-..-...|..+|+-+..+.+........-.++..+.+
T Consensus 196 a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~ 275 (536)
T KOG2734|consen 196 ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLR 275 (536)
T ss_pred hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHh
Confidence 44577788899888888888889888888877633 33223356677888888888877543332222233333333
Q ss_pred hc---ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhH
Q psy12605 224 LI---HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQ 300 (845)
Q Consensus 224 ll---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 300 (845)
-+ +..||.. + +..++.++...+|+.+..... +++.+....+++...-+++. ....+
T Consensus 276 ~la~yk~~dP~~------------~-------~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr 334 (536)
T KOG2734|consen 276 QLAVYKRHDPAT------------V-------DEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSR 334 (536)
T ss_pred hcchhhccCCCC------------c-------CHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhh
Confidence 22 2334320 0 011266666777776655444 45666677788777666666 55578
Q ss_pred HHHHHHHHHHhcCCh--hhHHHHhcCCccchhhHhh
Q psy12605 301 TASLRAVGNIVTGTD--EQTQVILNCDALSHFPALL 334 (845)
Q Consensus 301 ~~al~~L~nl~~~~~--~~~~~i~~~~~l~~L~~lL 334 (845)
..|+++|-....+.+ +....+++..++..+..+.
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 889999999988876 5667777877777766655
No 119
>KOG1240|consensus
Probab=97.41 E-value=0.0053 Score=71.96 Aligned_cols=299 Identities=14% Similarity=0.110 Sum_probs=180.6
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC---Chhh
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD---GPQL 165 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~---~~~~ 165 (845)
+++.+...++.-...+.+..|+..|..++....+-. .=.-++|.++.++.++..++|..|+.+|..+-.. -+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~---~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV---KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH---HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 466666666544667889999999999986322211 1124899999999999999999999988876532 1212
Q ss_pred HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhCh
Q psy12605 166 RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNP 245 (845)
Q Consensus 166 r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~ 245 (845)
-..++..-.+|.|-.++...+...+|..-+.+|..|+...- .+ .....-.....+++..+.+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~---rF-le~~q~~~~~g~~n~~nse-------------- 561 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY---RF-LELTQELRQAGMLNDPNSE-------------- 561 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH---HH-HHHHHHHHhcccccCcccc--------------
Confidence 22233334567777777765555666666777777664220 00 0000000011112222211
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
..... .......+ ..++-+..+.+|.++++-|+.+-+..|+-||.-=.. .=-+.
T Consensus 562 ---------------------t~~~~~~~~~~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND 616 (1431)
T KOG1240|consen 562 ---------------------TAPEQNYNTELQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSND 616 (1431)
T ss_pred ---------------------cccccccchHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---ccccc
Confidence 00000 01111222 223344566777777788888888888888742110 00011
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
=.++.|+..|+++|..+|..-...+..++.... ..-++..++|.|.+-|.+. .+.|...|+.++..++...-
T Consensus 617 ~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~seyllPLl~Q~ltD~-----EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 617 VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSEYLLPLLQQGLTDG-----EEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred chHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHHHHHHHHHHhccCc-----chhhHHHHHHHHHHHHHhcc
Confidence 257889999999999888777666665533211 1113456788888888874 78888999999998886432
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.++..-...++....+|-.++.-||..++..|..++.
T Consensus 689 --l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 689 --LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred --cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 2222222345566777888999999999999988775
No 120
>KOG1517|consensus
Probab=97.41 E-value=0.0063 Score=70.18 Aligned_cols=234 Identities=17% Similarity=0.200 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC
Q psy12605 62 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141 (845)
Q Consensus 62 ~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~ 141 (845)
++.|+.-|.+++..++ ..+..-..-|+.|..++||+ +..+++|..-+.+-++|-.-++.....++..++=.++++.|.
T Consensus 487 RlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQ-S~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQ-SSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhc-cchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 4667777878887663 34555567799999999994 677888888888888877766667777888888888888887
Q ss_pred CC---ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHH
Q psy12605 142 SP---HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 218 (845)
Q Consensus 142 s~---~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 218 (845)
.+ +++-+.-|+.+|..+...-+..++...+.+.+...+..++.+...-++.-++-+|..|-.+.+..+-.....++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 72 457788899999999988777888888889999888888875333466668888999988887666666677888
Q ss_pred HHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC----hhhHHH------------HHhc
Q psy12605 219 PALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG----NDQIQM------------VIDS 282 (845)
Q Consensus 219 ~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~------------~~~~ 282 (845)
..|..++.++-++ ++..|..+|..+.... ++.... .++.
T Consensus 645 ekL~~~LsD~vpE-------------------------VRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~ 699 (1387)
T KOG1517|consen 645 EKLILLLSDPVPE-------------------------VRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIED 699 (1387)
T ss_pred HHHHHHhcCccHH-------------------------HHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHH
Confidence 8899999888888 8888888888765532 111111 1122
Q ss_pred Cch---hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHh
Q psy12605 283 GVV---PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVIL 322 (845)
Q Consensus 283 g~i---~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~ 322 (845)
-+. -.++.+++...+-++....-+|..+..+.......+.
T Consensus 700 ~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 700 LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 222 2566666778888888888888888777655444333
No 121
>KOG2973|consensus
Probab=97.40 E-value=0.05 Score=54.83 Aligned_cols=287 Identities=16% Similarity=0.158 Sum_probs=157.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHH--hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI--HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..+++ ..+.+.+|.++..|+..+-.+-.. ..+.+. +.-.++.+.++++. ..+ -..|+.+|.|++.. .+.
T Consensus 5 l~elv-~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~-~~l 75 (353)
T KOG2973|consen 5 LVELV-ELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQK-EEL 75 (353)
T ss_pred HHHHH-HHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhh-HHH
Confidence 34677 889999999999998888765432 122222 23468889999953 333 57888999999875 667
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh------cCChhhHHhhhcCCCC-HHHHHHHHH
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN------MGVVPPLLSFIKPDIP-ISFLRNVTW 196 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~------~g~i~~Lv~ll~~~~~-~~~~~~a~~ 196 (845)
++.+.+. .+..++..+-.+...+....+..|.|++.+.......+.. .|.+.....+..++.. ..-....+.
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 7777776 7888888888888889999999999999887655554432 3344444444444322 122344566
Q ss_pred HHHHhhcCCCCCCChhHHhhHH--HHHHhhcccCCchhhHHHH----HHHhhhChhhHHhhh-hhHHHHHHHHHHHHHhh
Q psy12605 197 VIVNLCRNKDPPPSMSTIIELL--PALNILIHHHDTSVSIYLW----LSIIEKNPQISKILV-SKMKILVDTVWALSYLT 269 (845)
Q Consensus 197 ~L~~l~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~~~~~~~----~~l~~~~~~~~~~~~-~~~~~~~~a~~~L~~l~ 269 (845)
+++|+++......-+ .....+ ..+..+-. ++..++..+- ++.+...+ ....+. ....+ -...|.=++
T Consensus 155 vf~nls~~~~gR~l~-~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~l---Lp~iLlPla 228 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLL-LEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINL---LPAILLPLA 228 (353)
T ss_pred HHHHHhhhhhhhhHh-cchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hHHHHhcchHHH---HHHHHhhcC
Confidence 777777765322211 111111 11222222 3333211111 11111000 000000 00000 111111112
Q ss_pred cCChhhHHHHHhcCchhhHHhhcc-----CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHH
Q psy12605 270 DGGNDQIQMVIDSGVVPSLIPLLS-----HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICK 343 (845)
Q Consensus 270 ~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~ 343 (845)
... +.-+. +...+|.=+++|. .+++.++..-+.+|.-+|.. ...|+.+.+.|+.+.+-.+=+. +++++++
T Consensus 229 gpe-e~sEE--dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ 304 (353)
T KOG2973|consen 229 GPE-ELSEE--DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE 304 (353)
T ss_pred Ccc-ccCHH--HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence 111 10000 1112233236662 45788999999999999876 4557888888777766555544 4666666
Q ss_pred HHHHHHHHh
Q psy12605 344 EAVWFLSNI 352 (845)
Q Consensus 344 ~a~~~L~nl 352 (845)
.+-....-+
T Consensus 305 ace~vvq~L 313 (353)
T KOG2973|consen 305 ACEQVVQML 313 (353)
T ss_pred HHHHHHHHH
Confidence 554444444
No 122
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.38 E-value=0.00093 Score=56.45 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC--CCChhHHHHHHHHHHHhcCCChhhHHHHHhc
Q psy12605 105 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172 (845)
Q Consensus 105 i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~--s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~ 172 (845)
.+.....++++++..+++....+.+.|++|.++.... ..+|-++++|++++.|++..++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4667789999999999999999999999999999864 5689999999999999999999999988754
No 123
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.38 E-value=0.00042 Score=48.41 Aligned_cols=39 Identities=41% Similarity=0.674 Sum_probs=36.2
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
++++..+++.|+++.|+++|++++++++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 357788999999999999999999999999999999997
No 124
>KOG1991|consensus
Probab=97.37 E-value=0.51 Score=55.16 Aligned_cols=264 Identities=14% Similarity=0.140 Sum_probs=138.3
Q ss_pred HHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhc------C--CchhhHHHHHHHHHHhhcC--ChHHHHHHHhcCChH
Q psy12605 302 ASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLT------H--PKEKICKEAVWFLSNITAG--NQAQVQAVIDAGLLP 370 (845)
Q Consensus 302 ~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~------~--~~~~~~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~ 370 (845)
+|+.++..+++.. .+.- .+.++.+++++. . .++..+..|+.++++++.- .....+..++.=+++
T Consensus 391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 6777777777543 2211 256777788875 2 2455667888888887531 111112222222344
Q ss_pred HHHHHhhhcccccCChhHHHHHHHHHHHHhc---CChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCh
Q psy12605 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 371 ~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
.++..+++. -.-+|..|||.++.++. .++.... .+.....+.|. +.+-.|+..|+.||..+..+.+
T Consensus 466 hVfP~f~s~-----~g~Lrarac~vl~~~~~~df~d~~~l~-----~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 466 HVFPEFQSP-----YGYLRARACWVLSQFSSIDFKDPNNLS-----EALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HhhHhhcCc-----hhHHHHHHHHHHHHHHhccCCChHHHH-----HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 444444442 56789999999999984 2222222 24455566666 7777899999999999998776
Q ss_pred HHHHHHHh--CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhh
Q psy12605 447 QLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 524 (845)
Q Consensus 447 ~~~~~l~~--~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l 524 (845)
.....+.. .+.++.|+++.+...++.+.-..=..++.++.--. +-..+........+.+++..++.
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseEls-PfA~eL~q~La~~F~k~l~~~~~----------- 603 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELS-PFAVELCQNLAETFLKVLQTSED----------- 603 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHhccCC-----------
Confidence 55443332 24566677776655443322222122222221110 11112223334444444442100
Q ss_pred hcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHH
Q psy12605 525 EKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV 604 (845)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 604 (845)
+.+......+...|++.++-.++.+-+... +. -.-++...++++..++++.-.++-++++
T Consensus 604 -~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p------------------~v-l~~le~~~l~vi~~iL~~~i~dfyeE~~ 663 (1010)
T KOG1991|consen 604 -EDESDDDKAIAASGILRTISTILLSLENHP------------------EV-LKQLEPIVLPVIGFILKNDITDFYEELL 663 (1010)
T ss_pred -CCccchHHHHHHHHHHHHHHHHHHHHhccH------------------HH-HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111122223344455555554443322111 11 1112334566666777777778888888
Q ss_pred HHHhhhcc
Q psy12605 605 WFLSNITA 612 (845)
Q Consensus 605 ~~Lsnl~~ 612 (845)
..+.+++.
T Consensus 664 ei~~~~t~ 671 (1010)
T KOG1991|consen 664 EIVSSLTF 671 (1010)
T ss_pred HHHhhhhh
Confidence 88877764
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.49 Score=54.88 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=115.8
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
+.+.++..-....=.+++++..+++ .....|.+++...+.|.+ ++.-.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~E-------------------------lKrL~ 75 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVE-------------------------LKRLL 75 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHH-------------------------HHHHH
Confidence 4444343344445567788887774 456667777766666666 44444
Q ss_pred HHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhh
Q psy12605 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKI 341 (845)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~ 341 (845)
-.-+...+...++.. + -.+..+..=+.++++.+|..|+++++.+=. + .+.+ .+++++.++++++++.+
T Consensus 76 ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~--~----el~~-~~~~~ik~~l~d~~ayV 143 (757)
T COG5096 76 YLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRV--K----ELLG-NIIDPIKKLLTDPHAYV 143 (757)
T ss_pred HHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcCh--H----HHHH-HHHHHHHHHccCCcHHH
Confidence 444444555555322 1 135667777899999999999999998721 2 2222 36789999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 342 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 342 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
|+.|+.++.++-.-++.. ..+.|.+..+..++.+ .+|.+..+|..+|..+...
T Consensus 144 Rk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D-----~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 144 RKTAALAVAKLYRLDKDL---YHELGLIDILKELVAD-----SDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhC-----CCchHHHHHHHHHHHhchh
Confidence 999999999996544432 3355677777777766 4899999999999988643
No 126
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.32 E-value=0.00044 Score=58.07 Aligned_cols=87 Identities=28% Similarity=0.374 Sum_probs=70.4
Q ss_pred hhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 285 VPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 285 i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
++.|++.| .++++.++..|+.+|+.+- +. .+++.|..+++++++.+|..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 46788888 8899999999999999552 11 35789999999999999999999999882
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
....++.|.+.+.+. .+..++..|..+|+
T Consensus 60 -~~~~~~~L~~~l~~~----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDD----DDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-----SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCC----CcHHHHHHHHhhcC
Confidence 234788999999876 46677898988874
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.28 E-value=0.0004 Score=52.31 Aligned_cols=55 Identities=35% Similarity=0.593 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHh
Q psy12605 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158 (845)
Q Consensus 103 ~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nl 158 (845)
|.+|..|+++|++++...++..... ...++|.|+.+|+++++++|..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999987766665553 346999999999999999999999999986
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.66 Score=53.85 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=126.7
Q ss_pred HcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCCh
Q psy12605 54 ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 133 (845)
Q Consensus 54 l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i 133 (845)
+.+.+...+..|++.+......+++ ... +.|.+++... +.+.++++..-.-|..+++..++.... ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--mss-----Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--MSS-----LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--hHH-----HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 5666777788888887777776654 333 4777888885 788899999988999999877743332 67
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhH
Q psy12605 134 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 134 ~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 213 (845)
+.+.+=++++++.+|-.|+++|+.+- .++.-.. +++++.+++.++ +..+|+.|+-++.++.+-+ ..+..
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~~-----~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld---~~l~~ 163 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLGN-----IIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD---KDLYH 163 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHHH-----HHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC---Hhhhh
Confidence 88899999999999999999999884 2223222 478888888887 4489999999999998654 33344
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..|.+..+..++.+.||.+-.+|..+++...|+
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 566778888888899999766666666666655
No 129
>KOG1240|consensus
Probab=97.18 E-value=0.0081 Score=70.49 Aligned_cols=265 Identities=16% Similarity=0.135 Sum_probs=160.6
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-ccHHH-HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN-PPIEA-LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~-~~~~~-i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
.++-+|-++ .++.+.++.+|-.|+..|.+++..-++ ++.++ +.-.=++|.|-.++..+....+|..-|..|..||..
T Consensus 460 LDRVlPY~v-~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 460 LDRVLPYFV-HLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HhhhHHHHH-HHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 456677888 899999999999999999999885332 11222 223446888888885435667888888889888852
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
...+.+.+--.....++++++.+ ...+. ....-...+.+ ++=+.+..++..+ +.-+++..+..|.
T Consensus 539 ----A~rFle~~q~~~~~g~~n~~nse-------t~~~~--~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~ 603 (1431)
T KOG1240|consen 539 ----AYRFLELTQELRQAGMLNDPNSE-------TAPEQ--NYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESII 603 (1431)
T ss_pred ----HHHHHHHHHHHHhcccccCcccc-------ccccc--ccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHH
Confidence 22222211111122234444432 11111 11112222222 1112333455444 3356666666676
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
-||..-.-.. ...-+++.|...|++.|.. ++..-...+..++-.-. ..-
T Consensus 604 ~LC~FFGk~k---sND~iLshLiTfLNDkDw~-------------------------LR~aFfdsI~gvsi~VG---~rs 652 (1431)
T KOG1240|consen 604 PLCVFFGKEK---SNDVILSHLITFLNDKDWR-------------------------LRGAFFDSIVGVSIFVG---WRS 652 (1431)
T ss_pred HHHHHhhhcc---cccchHHHHHHHhcCccHH-------------------------HHHHHHhhccceEEEEe---eee
Confidence 6665321111 1235778888888888777 55555555554433211 111
Q ss_pred HhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC
Q psy12605 280 IDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG 355 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 355 (845)
++..++|.|.+.|.++++-|...|+++|..|+...--.+..+. .+++....+|-+++.-+|..++..+..+...
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 3667789999999999999999999999999865322222232 3566677788899999999999999887543
No 130
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.17 E-value=0.00058 Score=51.41 Aligned_cols=55 Identities=35% Similarity=0.593 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
|.+|..|+|+|++++...++.... .....++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478999999999988877776655 4557899999999999999999999999976
No 131
>KOG1078|consensus
Probab=97.16 E-value=0.48 Score=53.91 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=95.7
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
..+.+=.++.+..+.+...|.+++.++...+... +. ..+..|--+++++...+|-.|..+|..++...+.... .
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-V 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-c
Confidence 3455556667788889999999999886543322 11 2667777788999999999999999998765443211 0
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh-cCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.+. =++.|+. + .-+.-|..++..+. .+.......+.. -+..++.=++++..-+...|+.+|++.-
T Consensus 320 cN~-elE~lIt---d--------~NrsIat~AITtLLKTG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~f 385 (865)
T KOG1078|consen 320 CNL-DLESLIT---D--------SNRSIATLAITTLLKTGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKF 385 (865)
T ss_pred cch-hHHhhhc---c--------cccchhHHHHHHHHHhcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhc
Confidence 000 1122221 1 11222333333332 233333333321 2344444444444445555555555432
Q ss_pred cCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 443 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 443 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
| ....+.+.-|-.+|.++...+.++.++.++..+...
T Consensus 386 ---p-----~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~ 422 (865)
T KOG1078|consen 386 ---P-----RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE 422 (865)
T ss_pred ---c-----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh
Confidence 2 122334555666666655556667766666666553
No 132
>KOG0567|consensus
Probab=97.14 E-value=0.022 Score=56.08 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=72.5
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
+..|.+-+...+.-.|-+++.+++.+- ....+|.|.+.|.+.. ..+-+|.+|+.+|+.++...
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~---E~pMVRhEaAeALGaIa~e~--- 251 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDET---EHPMVRHEAAEALGAIADED--- 251 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhh---cchHHHHHHHHHHHhhcCHH---
Confidence 445666666667788889999999872 2346788888888764 57899999999999997643
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++.|.+++.++.+-|++.|..+|--+..
T Consensus 252 --------~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 252 --------CVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred --------HHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999988865543
No 133
>KOG2734|consensus
Probab=97.11 E-value=0.15 Score=53.85 Aligned_cols=240 Identities=14% Similarity=0.090 Sum_probs=161.4
Q ss_pred HHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-----h----hhHHHHHhcCChhhHHh
Q psy12605 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-----P----QLRDYVINMGVVPPLLS 180 (845)
Q Consensus 110 ~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-----~----~~r~~i~~~g~i~~Lv~ 180 (845)
..-+.-+|.. |+.-..+++.++|+.|+.+|...+.++....+..|..+...+ . ..-+.+++.++++.|++
T Consensus 105 IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 3445556644 778888999999999999999999999999999999997543 1 24556677788888887
Q ss_pred hhcCC-----CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc--CCchhhHHHHHHHhhhChhhHHhhhh
Q psy12605 181 FIKPD-----IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH--HDTSVSIYLWLSIIEKNPQISKILVS 253 (845)
Q Consensus 181 ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (845)
-+..= ....-..++...+-|+..-.+.-.......|.+.-|..-+.. ....
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~a---------------------- 241 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDA---------------------- 241 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcch----------------------
Confidence 76421 112334456666777766554333333444555555443322 1222
Q ss_pred hHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc-----cCC----chhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 254 KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL-----SHK----EVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 254 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-----~~~----~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
...+|...|+-+-..+.+.......-+++..+++-+ ++| ..+..+.-..+|+.+... +..+..+...
T Consensus 242 ---Nk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~ 317 (536)
T KOG2734|consen 242 ---NKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKG 317 (536)
T ss_pred ---hHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhcc
Confidence 566777777777777766666666667787777776 121 234666777788877665 5567778888
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCCh--HHHHHHHhcCChHHHHHHhh
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQ--AQVQAVIDAGLLPKIIANLQ 377 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~--~~~~~l~~~~~i~~Lv~lL~ 377 (845)
.++....-++.. ....|..+..+|-.+..+.+ +.+..+++..++..++.+..
T Consensus 318 EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 318 EGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred ccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 788766666655 45667788888988877765 67777888777777766665
No 134
>KOG1077|consensus
Probab=96.99 E-value=0.94 Score=50.95 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 189 SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 189 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
...--|..+++|+.... ..+..-+-+-+++.+.+... -+++.++.||-.|
T Consensus 126 ~fv~LAL~~I~niG~re-------~~ea~~~DI~KlLvS~~~~~-----------------------~vkqkaALclL~L 175 (938)
T KOG1077|consen 126 TFVCLALHCIANIGSRE-------MAEAFADDIPKLLVSGSSMD-----------------------YVKQKAALCLLRL 175 (938)
T ss_pred HHHHHHHHHHHhhccHh-------HHHHhhhhhHHHHhCCcchH-----------------------HHHHHHHHHHHHH
Confidence 34555777888775432 12223333446666554431 1778888888888
Q ss_pred hcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 269 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
-+..++.+. -.+..++++.+|.+.+..+..++...+-.++..+++
T Consensus 176 ~r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 176 FRKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HhcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 777666432 236788999999998888999999999988877655
No 135
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.053 Score=58.84 Aligned_cols=289 Identities=12% Similarity=0.085 Sum_probs=137.4
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
..|.|-.-|++..+.+.-.+++++..++... .....++. .+..|-.+|... ....|-.|+.+|..++...+..
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~k--- 337 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQK--- 337 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCce---
Confidence 3455555566666788888888888877543 11122221 356666777766 4578889999999999866321
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhh
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 291 (845)
..-+=+.+-.++.+.+.. +..+|..+|.. .+..+.+..+ +..+..+
T Consensus 338 --v~vcN~evEsLIsd~Nr~-------------------------IstyAITtLLK--TGt~e~idrL-----v~~I~sf 383 (898)
T COG5240 338 --VSVCNKEVESLISDENRT-------------------------ISTYAITTLLK--TGTEETIDRL-----VNLIPSF 383 (898)
T ss_pred --eeecChhHHHHhhccccc-------------------------chHHHHHHHHH--cCchhhHHHH-----HHHHHHH
Confidence 112223344455555555 44455544432 2233333222 2333334
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP 370 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 370 (845)
+++-+...+.-++.++..++..-+..... .+..|...|. .+.-+.++.+..+++.+....|+.++. ++.
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe 453 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALE 453 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHH
Confidence 44433334444444444444322222221 2233444332 234455666666666655554444322 334
Q ss_pred HHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12605 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450 (845)
Q Consensus 371 ~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 450 (845)
.|+.++.+. .-+.+.......|+.=.-..++-. ..+..+.+-+--++.-||..|+.||..++..-.+
T Consensus 454 ~LC~fIEDc----ey~~I~vrIL~iLG~EgP~a~~P~------~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--- 520 (898)
T COG5240 454 VLCTFIEDC----EYHQITVRILGILGREGPRAKTPG------KYVRHIYNRLILENNIVRSAAVQALSKFALNISD--- 520 (898)
T ss_pred HHHHHHhhc----chhHHHHHHHHHhcccCCCCCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc---
Confidence 455555443 122222222222222110001100 1122333333345666777777777776653211
Q ss_pred HHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 451 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 451 ~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
.+....+...|-+++.+ .+.+++..++..+.+|-
T Consensus 521 ~~~~~sv~~~lkRclnD-~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 521 VVSPQSVENALKRCLND-QDDEVRDRASFLLRNMR 554 (898)
T ss_pred cccHHHHHHHHHHHhhc-ccHHHHHHHHHHHHhhh
Confidence 11111122333344443 34467777777777664
No 136
>KOG1991|consensus
Probab=96.94 E-value=1.3 Score=51.93 Aligned_cols=414 Identities=16% Similarity=0.129 Sum_probs=204.5
Q ss_pred ChHHHHHHHHHHHHHHcCC-CCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHH
Q psy12605 58 NPELQLLAVQSARKLLSSD-KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L 136 (845)
++-....|++.+..+.+.- ++.+....++.=+++.+...+ +++.--+|..|+|+++.+++.+ .+....-..+....
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f-~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF-QSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh-cCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHH
Confidence 4555666777777665421 122334444444666667777 4666789999999999999532 22222222367777
Q ss_pred HHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhc--CChhhHHhhhcCCCCHHHHHHHHH-HHHHhhcCCCCCCChh
Q psy12605 137 LRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINM--GVVPPLLSFIKPDIPISFLRNVTW-VIVNLCRNKDPPPSMS 212 (845)
Q Consensus 137 ~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~ 212 (845)
.+.|. +.+-.++..|+-+|..+..+.+.....+... +.++.++.+.+.-.. +.....+. .++.++..-. +-...
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~iV~~fseEls-PfA~e 585 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEKIVCKFSEELS-PFAVE 585 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHhhc-hhHHH
Confidence 77777 7788999999999999987776554444432 234445555554433 22333222 2333332111 11112
Q ss_pred HHhhHHHHHHhhccc---CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh------cCChhhHHHHHhcC
Q psy12605 213 TIIELLPALNILIHH---HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT------DGGNDQIQMVIDSG 283 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~------~~~~~~~~~~~~~g 283 (845)
........+.+++.. .++....+++ .|..+|..+. +..++..+.+ +..
T Consensus 586 L~q~La~~F~k~l~~~~~~~~~~ddk~i----------------------aA~GiL~Ti~Til~s~e~~p~vl~~l-e~~ 642 (1010)
T KOG1991|consen 586 LCQNLAETFLKVLQTSEDEDESDDDKAI----------------------AASGILRTISTILLSLENHPEVLKQL-EPI 642 (1010)
T ss_pred HHHHHHHHHHHHHhccCCCCccchHHHH----------------------HHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 223455555666653 2222111111 1222222211 1223333332 444
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+++.+-..|.+.-.++-+.++..+.+++....+..-.+= |.++.+.+.+.....+--....-+|.|......+ .+
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~ 717 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SL 717 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hh
Confidence 555555566666677777888887777654332211111 3455566666555555555666667765432221 11
Q ss_pred Hh-cCChHH----HHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh----C--CCCHHHHH
Q psy12605 364 ID-AGLLPK----IIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL----M--SPHSNVCE 432 (845)
Q Consensus 364 ~~-~~~i~~----Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL----~--~~~~~v~~ 432 (845)
.. ...... +-.++.+.. ....=...|+..+..+.-........ .+|.++++. . .++...+.
T Consensus 718 ~s~~~y~~il~~i~~~~l~~e~---~~D~d~~~a~kLle~iiL~~kg~~dq-----~iplf~~~a~~~l~~~~e~s~~~~ 789 (1010)
T KOG1991|consen 718 LSNPDYLQILLEIIKKVLTSEN---GEDSDCESACKLLEVIILNCKGLLDQ-----YIPLFLELALSRLTREVETSELRV 789 (1010)
T ss_pred hccchHHHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHhcCcHhh-----HhHHHHHHHHHHHhccccchHHHH
Confidence 11 111222 222233221 01122233555555543322111111 255544433 2 25666777
Q ss_pred HHHHHHHHhhcCChH-HHHHHHhCCChHH----HHhccCCCCChhHHHHHHHHHHHhhcC-CCCCCChhHHHhHHHHHHH
Q psy12605 433 QAVWALGNIIGDGPQ-LRDYVINMGVVPP----LLSFIKPDIPISFLRNVTWVIVNLCRN-KDPPPSMSTIIELLPALNI 506 (845)
Q Consensus 433 ~a~~~L~nl~~~~~~-~~~~l~~~g~l~~----L~~ll~~~~~~~~~~~~~~~l~nL~~~-~~~~~~~~~~~~~l~~l~~ 506 (845)
.++.+..|.-..+|. .-..+.+.|.... ..+.+......--++.|+-.|.-++.- ..+.-....+.++.+++..
T Consensus 790 ~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~ 869 (1010)
T KOG1991|consen 790 MLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVE 869 (1010)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 777766655555544 3444445554333 223332221122244555556655554 4444455555677777776
Q ss_pred hhcCCC
Q psy12605 507 LIHHHD 512 (845)
Q Consensus 507 ll~~~d 512 (845)
++..-.
T Consensus 870 L~~~Lp 875 (1010)
T KOG1991|consen 870 LLLSLP 875 (1010)
T ss_pred HHHHHH
Confidence 666443
No 137
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.91 E-value=0.0067 Score=61.47 Aligned_cols=188 Identities=14% Similarity=0.120 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHH----HHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHH
Q psy12605 184 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL----PALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259 (845)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l----~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (845)
.+.+=+.+..++..|..++.+..+..........+ ..+...+.+.... +..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~-------------------------v~~ 71 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSK-------------------------VSK 71 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------------------------HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHH-------------------------HHH
Confidence 33355677778888888887662222212222222 3444444444444 778
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
.||.++..++..-....+.+ -..+++.|+..+.+++.-++..|..+|..++......... .++.+...+.++++
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 89999988877655444444 3367888999999988999999999999998764411111 14566777788999
Q ss_pred hhHHHHHHHHHHhhcCCh---HHHH-HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 340 KICKEAVWFLSNITAGNQ---AQVQ-AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~---~~~~-~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
.+|..++..+..+....+ .... ...-..+++.+...+.+. ++++|..|-.++..+...-++..
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-----~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-----DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS------HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHCCHhh
Confidence 999999999988866544 1111 111134667777777774 89999999999998866544433
No 138
>KOG2062|consensus
Probab=96.85 E-value=0.15 Score=57.33 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=65.6
Q ss_pred ccchHHh-hcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHH
Q psy12605 585 LSHFPAL-LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVF 663 (845)
Q Consensus 585 l~~L~~l-l~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (845)
+..|..+ +++.+.+||+.|..+|+-++..+++. +|..+++|.
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLs---------------------------- 598 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLS---------------------------- 598 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHh----------------------------
Confidence 3334344 45678999999999999999887764 455666663
Q ss_pred HHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHH
Q psy12605 664 LQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPF 743 (845)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L 743 (845)
++.++.||..++.+|+-.|...-....-.+ |
T Consensus 599 -----------------------------------------es~N~HVRyGaA~ALGIaCAGtG~~eAi~l--------L 629 (929)
T KOG2062|consen 599 -----------------------------------------ESYNPHVRYGAAMALGIACAGTGLKEAINL--------L 629 (929)
T ss_pred -----------------------------------------hhcChhhhhhHHHHHhhhhcCCCcHHHHHH--------H
Confidence 788999999999999999943222221111 1
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHhh
Q psy12605 744 CDLLSCKDAQVIQVVLDGINNMLKMA 769 (845)
Q Consensus 744 ~~~L~~~d~~~~~~al~~L~~l~~~~ 769 (845)
-.+..+...=|+..|+-++.-++...
T Consensus 630 epl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 630 EPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 12333444557777777777766544
No 139
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.82 E-value=0.33 Score=53.99 Aligned_cols=355 Identities=17% Similarity=0.168 Sum_probs=181.5
Q ss_pred hHHHHHhhCCCCh---hHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 133 VPLFLRLLMSPHS---NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 133 i~~L~~lL~s~~~---~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
+|.++..|.+.++ .-.+.++.+|+.+|.+.. .-+.+.- ..+..+-.......+.+....++.+|.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 4778888877655 678899999999996644 3333221 2334444444444455677788888888776553333
Q ss_pred ---ChhHHh--hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcC
Q psy12605 210 ---SMSTII--ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSG 283 (845)
Q Consensus 210 ---~~~~~~--~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g 283 (845)
...... ..+|.+..+.........- .++ .+...+...+..+... +.+..+.+
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~--------~~~----------~~L~~~~~l~~~iv~~l~~~~q~~~---- 136 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSD--------LDD----------RVLELLSRLINLIVRSLSPEKQQEI---- 136 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccc--------cch----------HHHHHHHHHHHHHHHhCCHHHHHHH----
Confidence 222222 3677776665432111000 000 1333333333333222 11211122
Q ss_pred chhhHHhhcc----------------CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc-CCchhhHHHHH
Q psy12605 284 VVPSLIPLLS----------------HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT-HPKEKICKEAV 346 (845)
Q Consensus 284 ~i~~Lv~lL~----------------~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~ 346 (845)
+..+..+.- ........-...+++.+-....-. .....+..++.+.. ..++..+..++
T Consensus 137 -~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 137 -LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred -HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 222222221 011222233334444443221100 00124556666654 45678888888
Q ss_pred HHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh-cCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 347 WFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 347 ~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
.+++-++-.-++. + . -.+++..+...+.........+..-.-..|+...+. ++++... ..+..|+.++.+
T Consensus 212 ~~la~LvNK~~~~-~-~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~ 282 (415)
T PF12460_consen 212 QLLASLVNKWPDD-D-D-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHcCCCCh-h-h-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC
Confidence 8888775542111 0 0 011222333222111111112223333445555544 3443322 235567777777
Q ss_pred CCHHHHHHHHHHHHHhhcCChHH--------HHHHHhCC----ChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCC
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQL--------RDYVINMG----VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 493 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~~--------~~~l~~~g----~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~ 493 (845)
+++...++.+++-+..+.+.+ .+.+.+.. .++.|++.++...+ +.+.+...+++.+..+.+...-
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhCCHHHH
Confidence 778888999999888874333 23333443 34455555544443 3677788899999987754444
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHH---HHhhhcCc
Q psy12605 494 MSTIIELLPALNILIHHHDTSVSIYLW---LSIIEKNP 528 (845)
Q Consensus 494 ~~~~~~~l~~l~~ll~~~d~~v~~~~~---l~~l~~~~ 528 (845)
...+...+|.+.+-+...|.++....+ ...+.+.+
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 566677999999999888888776644 33444443
No 140
>KOG2274|consensus
Probab=96.81 E-value=0.55 Score=54.31 Aligned_cols=239 Identities=12% Similarity=0.082 Sum_probs=150.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHH
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPA 220 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 220 (845)
.+..|.+.-.+.++++..+...+.+...+.. .+...++.+..+.+..++..|+.+++..|+- ........+++..
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccchHHHHH
Confidence 3445666668899988777553333332221 2344555665555556777788888777732 2222334456666
Q ss_pred HHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc--cCCchh
Q psy12605 221 LNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL--SHKEVK 298 (845)
Q Consensus 221 L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~ 298 (845)
|.++......+ +......+|+.....+++... ..++.++|.++.+. .+.++.
T Consensus 535 L~qlas~~s~e-------------------------vl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~ 588 (1005)
T KOG2274|consen 535 LLQLASKSSDE-------------------------VLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQ 588 (1005)
T ss_pred HHHHcccccHH-------------------------HHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCch
Confidence 66666555555 555556666666666665433 33667777776666 456777
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc----hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHH
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK----EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 374 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~ 374 (845)
+...+-.++..++.. ......+. ...+|.++..|..+. .....-+.-.|..+..+.+......+-.-..|++.+
T Consensus 589 V~~~~qd~f~el~q~-~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak 666 (1005)
T KOG2274|consen 589 VASLAQDLFEELLQI-AANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHHHHHHHHHH-HHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHh
Confidence 887787787777642 11111121 247899999997654 566677777777777766655555555567888888
Q ss_pred HhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCCh
Q psy12605 375 NLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416 (845)
Q Consensus 375 lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i 416 (845)
+.-.. ++..+-..+..||..+.+.+.+....--..++.
T Consensus 667 ~tlHs----dD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~ 704 (1005)
T KOG2274|consen 667 ITLHS----DDHETLQNATECLRALISVTLEQLLTWHDEPGH 704 (1005)
T ss_pred heeec----CChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence 88655 578888999999999988776655444444443
No 141
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.76 E-value=0.069 Score=53.91 Aligned_cols=295 Identities=14% Similarity=0.099 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhc-CChhhHHhhh
Q psy12605 104 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFI 182 (845)
Q Consensus 104 ~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~-g~i~~Lv~ll 182 (845)
..+..-+.++....+.++-....-.. =..+.|-++++.-++-.+.-|+.||.++... ++.|..+... ..-..++..+
T Consensus 123 ~~k~~f~~vf~~~~~~~~~~v~~~~~-LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l 200 (432)
T COG5231 123 KHKKEFLSVFKQMLKDNTSYVESNYL-LFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEIL 200 (432)
T ss_pred HHHHHHHHHHHHHccCchHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHH
Confidence 34555556666655544332221000 0123344455555666788899999999854 6777776543 3445666777
Q ss_pred cCCC-CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 183 KPDI-PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 183 ~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
++.. ..+++.+..-++.-+.-+....+........+..++++.+..-. +++..-+
T Consensus 201 ~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~k------------------------eKV~Rlc 256 (432)
T COG5231 201 QNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAK------------------------EKVLRLC 256 (432)
T ss_pred HhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHH
Confidence 6543 35788888888887776654333333344555555555553221 2366778
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCchhhHHhhccC---CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh-hHhhcC
Q psy12605 262 VWALSYLTD-GGNDQIQMVIDSGVVPSLIPLLSH---KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF-PALLTH 336 (845)
Q Consensus 262 ~~~L~~l~~-~~~~~~~~~~~~g~i~~Lv~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L-~~lL~~ 336 (845)
+..+.++.+ .....+..+.-.|-+.+.++.|.. .+++++...=+.=..+.....+.. ..+. .+..| ...+.
T Consensus 257 ~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~--~fD~-Y~~ELdsg~l~- 332 (432)
T COG5231 257 CGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC--IFDN-YLNELDSGRLE- 332 (432)
T ss_pred HHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh--HHHH-HHHHHhhCccc-
Confidence 888888776 333444443344545566666632 244444332222122211111100 0000 00000 01111
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHHHHhhhcccccCChh-HHHHHHHHHHHHhcCChHhHHHHHHc
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVID--AGLLPKIIANLQKVGRIVLRPN-LQFEAAWALTNIASGTSAQTQEVVAA 413 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~-v~~~a~~~L~~l~~~~~~~~~~l~~~ 413 (845)
-+|..+....| .++.+.+.+ ..++..|.++++.. ++. ....||.-+..+....|+....+...
T Consensus 333 wSp~H~~~dFW---------s~N~d~l~kdny~i~k~L~~~lq~n-----~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 333 WSPYHHKKDFW---------STNLDMLIKDNYEIVKVLKKYLQSN-----NPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred CCCcccccCch---------hhhHHHHhhhhHHHHHHHHHHHhcC-----CCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 12222222222 122233333 34678889999875 333 45668888889999999999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 414 GAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 414 g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
|+-+.+..++++++++|+-.|+.++..+.
T Consensus 399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999886654
No 142
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.76 E-value=0.0037 Score=43.50 Aligned_cols=38 Identities=42% Similarity=0.687 Sum_probs=35.2
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
+.+..+++.|+++.|++++.+++++++..++|+|+|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999999999986
No 143
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.70 E-value=0.099 Score=58.27 Aligned_cols=197 Identities=15% Similarity=0.102 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-----chhhHHHHHHHHHHHhcCChhhHHHHhc-CCccchh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-----EVKVQTASLRAVGNIVTGTDEQTQVILN-CDALSHF 330 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~v~~~al~~L~nl~~~~~~~~~~i~~-~~~l~~L 330 (845)
+...|+.||+|+...++..++.+.+.|..+.++..|+.. +.++.-...+.|--++......+..+++ .+++..+
T Consensus 48 v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l 127 (446)
T PF10165_consen 48 VSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELL 127 (446)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHH
Confidence 888999999999999998889999999999999999665 6778888888888887766666655554 4777777
Q ss_pred hHhhcC-----------------CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhc---c-cccCChhHH
Q psy12605 331 PALLTH-----------------PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV---G-RIVLRPNLQ 389 (845)
Q Consensus 331 ~~lL~~-----------------~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~---~-~~~~~~~v~ 389 (845)
...+.. .+.....+++..+.|+..+.+.... -.....++.++..+..- . .........
T Consensus 128 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~ 206 (446)
T PF10165_consen 128 TEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPH 206 (446)
T ss_pred HHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhH
Confidence 776511 1334556788899999776655432 01233455555554432 1 111345667
Q ss_pred HHHHHHHHHHhcCChHh-------HH----HHHHcCChHHHHHhhCC-----C---CHHHHHHHHHHHHHhhcCChHHHH
Q psy12605 390 FEAAWALTNIASGTSAQ-------TQ----EVVAAGAVPLFLRLLMS-----P---HSNVCEQAVWALGNIIGDGPQLRD 450 (845)
Q Consensus 390 ~~a~~~L~~l~~~~~~~-------~~----~l~~~g~i~~Lv~lL~~-----~---~~~v~~~a~~~L~nl~~~~~~~~~ 450 (845)
..+..+|.|+--.+... .. .......+..|+.+|+. . -.+.....+.+|.+++..+...|+
T Consensus 207 ~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk 286 (446)
T PF10165_consen 207 SHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRK 286 (446)
T ss_pred HHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHH
Confidence 77888888773221111 00 00111234556666542 1 235677888999999988888887
Q ss_pred HHHh
Q psy12605 451 YVIN 454 (845)
Q Consensus 451 ~l~~ 454 (845)
.+..
T Consensus 287 ~lr~ 290 (446)
T PF10165_consen 287 YLRA 290 (446)
T ss_pred HHHH
Confidence 7654
No 144
>KOG0414|consensus
Probab=96.68 E-value=2.3 Score=50.99 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=96.6
Q ss_pred cccchHHhhcC----CChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHH
Q psy12605 584 ALSHFPALLTH----PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQ 659 (845)
Q Consensus 584 ~l~~L~~ll~~----~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (845)
+.|.+..+... ++|+++..|.-+|+.+..-+.+.+. .-+|.|+..+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftime------------------------ 970 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIME------------------------ 970 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHh------------------------
Confidence 45666666643 4799999999999998765443332 12455655552
Q ss_pred HHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCC
Q psy12605 660 MSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGV 739 (845)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~ 739 (845)
.+.+|.+|..+..+++.++ .+-|. +++ -.
T Consensus 971 ---------------------------------------------ksp~p~IRsN~VvalgDla-v~fpn----lie-~~ 999 (1251)
T KOG0414|consen 971 ---------------------------------------------KSPSPRIRSNLVVALGDLA-VRFPN----LIE-PW 999 (1251)
T ss_pred ---------------------------------------------cCCCceeeecchheccchh-hhccc----ccc-hh
Confidence 4777888888888888887 22221 111 34
Q ss_pred chHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhc
Q psy12605 740 IPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 740 i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
-+.|++.|.+.++.+++.|+-.|..|+- ..++.--|-+..+..++.+++++++..|...+..+-
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLIL---------ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLIL---------NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHH---------hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 4567778888888899998888888874 346667777777888888888888888885554443
No 145
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.64 E-value=0.013 Score=49.66 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 388 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQLRDYVIN 454 (845)
Q Consensus 388 v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 454 (845)
.|.....+++|++..++..+..+.+.|+++.++.... ..+|-++++|++++.|++..+++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667888999999999999999999999999998764 568899999999999999999988877654
No 146
>KOG0567|consensus
Probab=96.64 E-value=0.072 Score=52.62 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=66.9
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
+..+.+...+.+...+-+.+.+|+.. .....++.|+..+.+.. ..+-+|.+|+.+|+++..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~-----------~~~~Av~~l~~vl~des---q~pmvRhEAaealga~~~----- 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM-----------QDEDAVPVLVEVLLDES---QEPMVRHEAAEALGAIGD----- 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh-----------ccchhhHHHHHHhcccc---cchHHHHHHHHHHHhhcc-----
Confidence 45555555555555666666777664 24567899999998765 578899999999999862
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
....+.+-++.+++...|++.+..++..+-
T Consensus 99 ------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 99 ------PESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred ------hhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 235677778888888899999888888775
No 147
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.62 E-value=0.023 Score=48.20 Aligned_cols=94 Identities=15% Similarity=0.284 Sum_probs=69.3
Q ss_pred chhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHH
Q psy12605 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIE 790 (845)
Q Consensus 711 ~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~ 790 (845)
.|+.+.+.|..++. +-++......+ .++++++..++++|.+++..|..+|+++.+......-.+. ....+.|.
T Consensus 2 ~R~ggli~Laa~ai-~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-----~~IF~~L~ 74 (97)
T PF12755_consen 2 YRKGGLIGLAAVAI-ALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-----NEIFDALC 74 (97)
T ss_pred chhHHHHHHHHHHH-HchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46778888888873 33344444443 6899999999999999999999999999987665432222 23457888
Q ss_pred hhhcCCCHHHHHHHHHHHHHhc
Q psy12605 791 MLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 791 ~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
.+...+++.|+.-| ++|.+.+
T Consensus 75 kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 75 KLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHcCCchhHHHHH-HHHHHHh
Confidence 89999999988777 5565543
No 148
>KOG1078|consensus
Probab=96.59 E-value=2 Score=49.16 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=126.3
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI 214 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 214 (845)
.+.+++++.+..+|...-.++..++.-+++.- + +...+..-.... +...+..|+.+|..+..+.. .
T Consensus 68 ~~tKlfQskd~~LRr~vYl~Ikels~isedvi---i---vtsslmkD~t~~-~d~yr~~AiR~L~~I~d~~m-------~ 133 (865)
T KOG1078|consen 68 AITKLFQSKDVSLRRMVYLAIKELSKISEDVI---I---VTSSLMKDMTGK-EDLYRAAAIRALCSIIDGTM-------L 133 (865)
T ss_pred HHHHHHhhcCHHHHHHHHHHHhhccccchhhh---h---hhHHHHhhccCC-CcchhHHHHHHHHhhcCcch-------h
Confidence 45577888888888888888888886554321 1 233344333333 33567777777777664431 1
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
.++-..+-+.+-+..+. +...|+-.=.++...+.+..+. ...-..+...+
T Consensus 134 ~~iery~kqaivd~~~a-------------------------vSsaalvss~hll~~~~~~vkr-----w~neiqea~~s 183 (865)
T KOG1078|consen 134 QAIERYMKQAIVDKNPA-------------------------VSSAALVSSYHLLPISFDVVKR-----WANEVQEAVNS 183 (865)
T ss_pred HHHHHHHHhHeeccccc-------------------------cchHHHHHHhhhhcccHHHHHH-----HHHhhhhccCc
Confidence 22222333333333333 2222222112222222221111 11112222233
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhH-HHHHHHHHHhhcCChHHHHHHHhcCChHHHH
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKIC-KEAVWFLSNITAGNQAQVQAVIDAGLLPKII 373 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~-~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv 373 (845)
.+.-+|.-|++.|..+-..+.- ++..++..+.++. ++ ..|.|.+-.++...-+.. .....-..+.+=
T Consensus 184 ~~~m~QyHalglLyqirk~drl---------a~sklv~~~~~~~--~~~~~A~~~lir~~~~~l~~~-~~~~s~~~~fl~ 251 (865)
T KOG1078|consen 184 DNIMVQYHALGLLYQIRKNDRL---------AVSKLVQKFTRGS--LKSPLAVCMLIRIASELLKEN-QQADSPLFPFLE 251 (865)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHcccc--ccchhHHHHHHHHHHHHhhhc-ccchhhHHHHHH
Confidence 4445778888888887543211 2233344333311 11 112233332211111100 000111234444
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChH
Q psy12605 374 ANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ 447 (845)
Q Consensus 374 ~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 447 (845)
.++.+ ....+..+|+.++.++....+..... .+..|--++.++..-+|-+|..+|..++...|.
T Consensus 252 s~l~~-----K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 252 SCLRH-----KSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHhc-----hhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 44544 36788899999999987654332222 677888889999999999999999999876553
No 149
>KOG2062|consensus
Probab=96.57 E-value=0.065 Score=60.05 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=151.9
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
++..|.+.|+..+++.+|.-++--|+-.+.++.. . ..-+.|-..|..++.-.-+.|.-++|-+...+. +.+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~--~-----eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~-~~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN--E-----EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTA-NQE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc--H-----HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcC-cHH-
Confidence 4555666665555556666655544433332211 0 122233344444444445555555555543321 111
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
++.-++..-.+.....+.|...--++-..-+. .+.+=+.+-+++.+.||-
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr--------qe~Ad~lI~el~~dkdpi----------------- 534 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR--------QEDADPLIKELLRDKDPI----------------- 534 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh--------hhhhHHHHHHHhcCCchh-----------------
Confidence 13333444333334445443222222211111 234556666677777666
Q ss_pred HhhhhhHHHHHHHHHHH--HHhhcCChhhHHHHHhcCchhhHHhh-ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCC
Q psy12605 249 KILVSKMKILVDTVWAL--SYLTDGGNDQIQMVIDSGVVPSLIPL-LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L--~~l~~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~ 325 (845)
++.....++ +|...+ +.+++..|++. ..+.+.+|+.+|.-+||-++..+++
T Consensus 535 --------lR~~Gm~t~alAy~GTg---------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------- 588 (929)
T KOG2062|consen 535 --------LRYGGMYTLALAYVGTG---------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------- 588 (929)
T ss_pred --------hhhhhHHHHHHHHhccC---------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------
Confidence 444444333 233222 23556667776 5778999999999999999877554
Q ss_pred ccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
..+..+.+|+ +-++.+|..++.+|+=.|++.-... .+. |++-|.+. ...-||..|+-+++-+.....
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~-lLepl~~D----~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AIN-LLEPLTSD----PVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHH-HHhhhhcC----hHHHHHHHHHHHHHHHHHhcc
Confidence 3566778885 4689999999999998877654321 111 22222222 356788888888877654332
Q ss_pred -HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC
Q psy12605 405 -AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 466 (845)
Q Consensus 405 -~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~ 466 (845)
..+..+ .++...+.+.+.+.+++.-..--.+ ..+-+.+.|+-..-+++-.
T Consensus 657 ~~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAi----------lAqGildaGGrNvtislqs 707 (929)
T KOG2062|consen 657 EQLCPKV--NGFRKQLEKVINDKHEDGMAKFGAI----------LAQGILDAGGRNVTISLQS 707 (929)
T ss_pred cccCchH--HHHHHHHHHHhhhhhhHHHHHHHHH----------HHhhhhhcCCceEEEEEec
Confidence 222111 2455667777776665533221111 2234555666555555543
No 150
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.50 E-value=0.21 Score=56.06 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=76.7
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhc
Q psy12605 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172 (845)
Q Consensus 93 Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~ 172 (845)
++..-+ .++..+..|+..+..+.+.-|+.... ++..+++|+.+.+..||.+|++.|..+|.+.++....+
T Consensus 28 il~~~k--g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 28 ILDGVK--GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHGGG--S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 344443 45788999999999998887887765 67889999999999999999999999999887776665
Q ss_pred CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcc---cCCch
Q psy12605 173 GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH---HHDTS 231 (845)
Q Consensus 173 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~ 231 (845)
.+.|+.+|..+.+ .....+-++|..+.+.+ ..+.+..++..+. ..|..
T Consensus 98 --aDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d--------~k~tL~~lf~~i~~~~~~de~ 148 (556)
T PF05918_consen 98 --ADVLVQLLQTDDP-VELDAVKNSLMSLLKQD--------PKGTLTGLFSQIESSKSGDEQ 148 (556)
T ss_dssp --HHHHHHHTT---H-HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HH
T ss_pred --HHHHHHHHhcccH-HHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccCchH
Confidence 4678889987643 45555666676666544 2345555554444 34554
No 151
>KOG0414|consensus
Probab=96.44 E-value=2.8 Score=50.38 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCCCccchhHHHHHHHhhcccCCHHHHHHHH-HcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhH
Q psy12605 705 PQGEFQTQKEAAWAISNLTISGNRDQVAKLV-QEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD 770 (845)
Q Consensus 705 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~ 770 (845)
.+.++.+|+.|..++.++... .++ -.|.+..+..+|.+++.++...|=.....|...++
T Consensus 1008 ~D~~~~vRkta~lvlshLILn-------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLILN-------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHHh-------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhccc
Confidence 678889999999999999822 233 56889999999999998888777755555555443
No 152
>KOG1020|consensus
Probab=96.22 E-value=2.4 Score=52.14 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
++..|+.||+.+...++... ....+-..+-.-+.+....|+++|+..+|......++.... ....+..-..+
T Consensus 832 lRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlD 903 (1692)
T KOG1020|consen 832 LRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILD 903 (1692)
T ss_pred HHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCC
Confidence 88899999999888766432 12222223333445667889999999999877665543332 23345555566
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCCh-hHHHHHHHHHHHH
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP-NLQFEAAWALTNI 399 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~-~v~~~a~~~L~~l 399 (845)
+...+|+.+...++.+|...++.-. +...+.+.++... ++. .++.-+..++.++
T Consensus 904 tgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~---DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 904 TGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVN---DEEGNIKKLVRETFLKL 958 (1692)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhc---cchhHHHHHHHHHHHHH
Confidence 7788999999999999887766422 2334455555432 233 3777777777775
No 153
>KOG2274|consensus
Probab=96.09 E-value=1.7 Score=50.60 Aligned_cols=314 Identities=12% Similarity=0.095 Sum_probs=169.1
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL 135 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~ 135 (845)
+.-|.....|.-.+.+..+... .... ...-.+...+..+..+..+-++..|+.+++..|+. +.-.-...+.+..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~--~~~~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTV--INPQ-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhc--cchh-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccchHHHHH
Confidence 3445555555555555433211 0000 01113555566665566677889999998888842 2222223467888
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhh-cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI 214 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 214 (845)
|+++....+.++-.....+|...+.-+|+.... .+.-+.|..+.+. ...++..+...+--++..++....+... ..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~ 611 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQ 611 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hH
Confidence 888888888888888888999999887765443 2334556555444 3332335555666667777664432222 35
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCchhhHHhhc-
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVPSLIPLL- 292 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL- 292 (845)
..++|.|+..+..++.... +. ...-++..|..+.+..+ ..-+.+ -.-++|++.+..
T Consensus 612 e~~iPslisil~~~~~~~~-----------~~----------l~~~aidvLttvvr~tp~pL~~~l-~~~~FpaVak~tl 669 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAP-----------AG----------LCAIAIDVLTTVLRNTPSPLPNLL-ICYAFPAVAKITL 669 (1005)
T ss_pred HHHHHHHHHHHcCcccccC-----------ch----------hhHHHHHHHHHHHhcCCCCccHHH-HHHHhHHhHhhee
Confidence 6789999999887652200 00 34445555554444332 222222 234456655554
Q ss_pred cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccc--hhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHHhc---
Q psy12605 293 SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS--HFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDA--- 366 (845)
Q Consensus 293 ~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~--~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~--- 366 (845)
++++..+...+-+||+.+.....+....-...++.. .+++.++. -+++.-..++...+.+...--......+..
T Consensus 670 HsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d 749 (1005)
T KOG2274|consen 670 HSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD 749 (1005)
T ss_pred ecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH
Confidence 677788889999999998766544322222333333 33333321 122233333334443321111111111111
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.++..++.-|... ....+......+++++...+.
T Consensus 750 ~IL~Avisrmq~a----e~lsviQsLi~VfahL~~t~~ 783 (1005)
T KOG2274|consen 750 QILRAVISRLQQA----ETLSVIQSLIMVFAHLVHTDL 783 (1005)
T ss_pred HHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhhCCH
Confidence 1344444444443 466777777778888776554
No 154
>KOG4151|consensus
Probab=96.08 E-value=0.16 Score=58.05 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=129.5
Q ss_pred CchhhHHhhccCCc-hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 283 GVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 283 g~i~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.+++++...++... ..-.-.++.++.|++..++..++.+....+++.+-.++...++.++..++..+.|+.-+..-...
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~ 620 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYER 620 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555553322 12234688999999988888888888888888888888888999999999999999888766666
Q ss_pred HHHh-cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH-HHHHcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 362 AVID-AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ-EVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 362 ~l~~-~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
.+.+ ....+.+..++... ......+++.++..|+......+. ......+...++.++.+++++++...+..+.
T Consensus 621 si~e~~~~l~~w~~~~e~~-----~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l 695 (748)
T KOG4151|consen 621 SIVEYKDRLKLWNLNLEVA-----DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL 695 (748)
T ss_pred HhhccccCchHHHHHHHhh-----hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence 6777 56677776666653 567777888888877776666655 4445578899999999999999999999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHH
Q psy12605 440 NIIGDGPQLRDYVINMGVVPPLL 462 (845)
Q Consensus 440 nl~~~~~~~~~~l~~~g~l~~L~ 462 (845)
|+..........+.....+..+.
T Consensus 696 n~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 696 NLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hHHHHHHHHHHHhccchHHHHHH
Confidence 97766655555555555444443
No 155
>KOG4535|consensus
Probab=96.02 E-value=0.028 Score=59.63 Aligned_cols=190 Identities=19% Similarity=0.172 Sum_probs=107.4
Q ss_pred CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC----ChH--HHHHHHhcC
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG----NQA--QVQAVIDAG 367 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~--~~~~l~~~~ 367 (845)
+++.-++.+|+++++-.+.+..-......-......+...+.+..-..|..++|+++|++.. .+. ....-+...
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 33445777888888877665433222222223445566666666677899999999998542 222 111111122
Q ss_pred ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh---HhHHHHHHcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc
Q psy12605 368 LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS---AQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 368 ~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.+..+++.-.... .++..|+..+..+|+|+..--. +.....+..|.+..+.. ..-...-.|+=+++.+++|+-.
T Consensus 482 ll~~~~~~A~~~~--Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 482 LLLKMLRSAIEAS--ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHHHhh--hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 3344443332211 1578899999999999764110 11111111122222211 1223456789999999999987
Q ss_pred CChH-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 444 DGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 444 ~~~~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
+..- ..+.=...-+++.|..++.+..+-+++-+++.+|..-.
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 6432 22222334467888888888777777777777776544
No 156
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.95 E-value=0.023 Score=48.17 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=46.2
Q ss_pred CCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHH
Q psy12605 704 FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLK 767 (845)
Q Consensus 704 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~ 767 (845)
+.+.|+.||..||.+|.|++.....+....+ ..++..|++++.+.|+.|+..| ..|.++++
T Consensus 36 ~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 36 FDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 3889999999999999999844433333322 3588889999999999987665 77777764
No 157
>KOG1248|consensus
Probab=95.92 E-value=0.66 Score=55.41 Aligned_cols=234 Identities=14% Similarity=0.137 Sum_probs=135.2
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH--cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh-hhHHH
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA--AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-QLRDY 168 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~-~~r~~ 168 (845)
.+.....++.++.+|..+..+|..++.. +.......+ ......|.+-+++.....+...+.+|-.|-...+ +..+.
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444554556789999999999999876 222222221 1244455555566666677777777776654443 44444
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc--CC---CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhh
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR--NK---DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEK 243 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~--~~---~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~ 243 (845)
+.. .|+-++-.++ +.+...++++..+|..++. .. ...+........++.+...+-.+...
T Consensus 736 i~k--~I~EvIL~~K-e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~------------ 800 (1176)
T KOG1248|consen 736 IPK--LIPEVILSLK-EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTR------------ 800 (1176)
T ss_pred HHH--HHHHHHHhcc-cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHH------------
Confidence 433 2444444444 4477899999999999882 11 11111233444555554443333222
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 244 NPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 244 ~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
+....+-++..+.....+...--.-.+++..+..+|.++++.++.+|++.+.-++..-+...-.-..
T Consensus 801 -------------~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 801 -------------VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred -------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 2222233333333221111111112355667777889999999999999999998775553322222
Q ss_pred CCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 324 CDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 324 ~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
...++.+..+.++....+|..+-..|-.+..
T Consensus 868 ~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 868 EELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2367778887777777788777766666643
No 158
>KOG1020|consensus
Probab=95.89 E-value=6.8 Score=48.47 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+++..++..|. ++...+|..|+.||..+...++..... ...-..+-.-+.++...||++|+..+|......++.-.
T Consensus 816 ~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~---~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSR---PDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcC---HHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 46777888884 677899999999999998766543211 11223334455666789999999999977766565544
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
..++ .+.+-+.. +...+|..++.++..+|...+
T Consensus 892 qyY~-----~i~erIlD-tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 892 QYYD-----QIIERILD-TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHH-----HHHhhcCC-CchhHHHHHHHHHHHHHHhCC
Confidence 4443 22222222 256899999999999998663
No 159
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.79 E-value=0.015 Score=50.67 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=61.1
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
++..|+++|..+.++.+..-|+.=|+.++...|+.+..+-+.|+=+.+++++.+++++|+.+|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 58999999966667888888999999999988888888878999999999999999999999999998875
No 160
>KOG4151|consensus
Probab=95.74 E-value=0.22 Score=56.82 Aligned_cols=246 Identities=15% Similarity=0.107 Sum_probs=155.0
Q ss_pred HhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHH-hhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHH
Q psy12605 157 NIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN-LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 235 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 235 (845)
.++....+-|...++.|+...|+++....++ ..+..+.++|.. +.-.. ......++.+...+.. |..
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e-~akl~~~~aL~~~i~f~~------~~~~~v~~~~~s~~~~-d~~---- 555 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQQFE-EAKLKWYHALAGKIDFPG------ERSYEVVKPLDSALHN-DEK---- 555 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHHhch-HHHHHHHHHHhhhcCCCC------Cchhhhhhhhcchhhh-hHH----
Confidence 3333334456667788889999988876644 566677777772 11100 0112233333222221 111
Q ss_pred HHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh
Q psy12605 236 LWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315 (845)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~ 315 (845)
..-.-.++.++.+|+..+....+.+.+.-.++.+-.++...++..+.++++++.||..++.
T Consensus 556 -------------------~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~ 616 (748)
T KOG4151|consen 556 -------------------GLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL 616 (748)
T ss_pred -------------------HHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH
Confidence 0022356778888888877766777777777777777888899999999999999998865
Q ss_pred hhHHHHhcC-CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH-HhcCChHHHHHHhhhcccccCChhHHHHHH
Q psy12605 316 EQTQVILNC-DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV-IDAGLLPKIIANLQKVGRIVLRPNLQFEAA 393 (845)
Q Consensus 316 ~~~~~i~~~-~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l-~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~ 393 (845)
-....+.+. ..++.....+...++....+++.++..++......+..+ --......++..+.+. ++.+|....
T Consensus 617 ~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-----~~~~qhrgl 691 (748)
T KOG4151|consen 617 LYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-----DDEIQHRGL 691 (748)
T ss_pred HHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-----hhhhhhhhh
Confidence 555556663 455655555666677777777777776666655555532 2245666777777764 788999888
Q ss_pred HHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 394 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 394 ~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
....|+.....+....+......+.+..+-.......++.+..+|
T Consensus 692 ~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l 736 (748)
T KOG4151|consen 692 VIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCL 736 (748)
T ss_pred hhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHH
Confidence 888887776666666666666655554443333334444444443
No 161
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.70 E-value=0.7 Score=46.59 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc
Q psy12605 105 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 183 (845)
Q Consensus 105 i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~ 183 (845)
....|+.+|.-++--++..+..+-+...+..|+.+|+ +..+.++..++.+|-.+-.+++.+.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4566888999999877888888889999999999994 457899999999999999999999998889999999999997
Q ss_pred CCC-CHHHHHHHHHHHHHhhcCC
Q psy12605 184 PDI-PISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 184 ~~~-~~~~~~~a~~~L~~l~~~~ 205 (845)
... +.+++-.++..|.-.....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred cccccHHHhHHHHHHHHHHHccc
Confidence 543 5677777777776655544
No 162
>KOG3036|consensus
Probab=95.70 E-value=0.34 Score=47.39 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChH
Q psy12605 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVP 417 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~ 417 (845)
...|..-+.+|..+.++.++.+..+.++.+---+..+|.....+....-+|..+.+.++.+.. ++.+..+.+...+.+|
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 344444444444555666777788888887777788887665444567789999999999997 4556778888999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 418 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 418 ~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
..++.++.+++.-+..|...+..|..+.....-..... ..+..++..+.+..+..+.++++.+..+|+.++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999988764433222211 133444444455566677777777777777544
No 163
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.64 E-value=0.69 Score=48.83 Aligned_cols=183 Identities=17% Similarity=0.180 Sum_probs=109.2
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHH--hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC--
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI--HSGILPVLVECLERSDRPNLQFEAAWALTNIASG-- 119 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-- 119 (845)
..+.+.+ ..+.....+.|..++..+.+++.... ..+.+. ..-+++.+.+.++... .+-+..|+.++.-++-.
T Consensus 43 ~~L~~~I-d~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 43 DKLKEAI-DLLTEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcC
Confidence 3466777 78888889999999999999987652 223222 2346888888886544 36677787777776643
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCC--hhHHHHHHHHHHHhcC---CChhhHHHHHhcCChhhHH--hhhc---------
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPH--SNVCEQAVWALGNIIG---DGPQLRDYVINMGVVPPLL--SFIK--------- 183 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~--~~v~~~a~~~L~nla~---~~~~~r~~i~~~g~i~~Lv--~ll~--------- 183 (845)
..+....+++ ...|.|.+.+.++. ..+|..|+.+|+-++. .+++-.....+ .+..+. ...+
T Consensus 119 ~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 119 AGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCccccc
Confidence 3344555555 58889999888764 4566677777776643 33222221111 122111 1111
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhh
Q psy12605 184 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 233 (845)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 233 (845)
......+...|+.+-+-|...-+...-.......+|.|..+|.+.|.+++
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVR 245 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 11123566666544444443332211123456789999999999999933
No 164
>KOG1967|consensus
Probab=95.61 E-value=0.077 Score=61.07 Aligned_cols=188 Identities=20% Similarity=0.191 Sum_probs=121.2
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH--------HHHh----cCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD--------YVIN----MGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~--------~i~~----~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
+...|+.+|+. +++-..+..++.-+..|++..+. .+++ ..++|.+++..... +...+.+-..+|+
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~-~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA-PGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC-CccchhHHHHHHH
Confidence 34556666665 34556667777777766654321 1222 24688888877732 4467777888888
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
+...+.+...-.......+|.|.+.+.-+|.. ++..+..++..+..........-
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~-------------------------v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVI-------------------------VRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccc-------------------------hhhhHhhhhhHHHHhccccchHH
Confidence 88876644334445667889999999999998 66667776665443333222221
Q ss_pred HhcCchhhHHhhccCCc---hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHH
Q psy12605 280 IDSGVVPSLIPLLSHKE---VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 348 (845)
-..++|.+..+=.+++ ..+|..|+.+|..+..--+...-......++..|...|+++..-+|++|..+
T Consensus 948 -~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 948 -LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred -HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1234555555544443 6799999999999987434332223334578889999999999999988654
No 165
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.61 E-value=0.71 Score=50.03 Aligned_cols=287 Identities=17% Similarity=0.145 Sum_probs=147.0
Q ss_pred ChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 132 AVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
-+.+++.-+.+ ....+|..++--|+.-+. ++++|..+...|.+..+++.+....+..+...++.++..+.........
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 35566666663 355788888888888885 5789999999999999999996554443444444444444433323333
Q ss_pred hhHHhhHHHHHHhhcccC---CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhh
Q psy12605 211 MSTIIELLPALNILIHHH---DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPS 287 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 287 (845)
..........+.+++.-+ +...... ......++ ++.+.....+ +.....+....
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-----~~~~~~ls-------k~~~~~~~~~-----------~~~~~~~~~~~ 157 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-----SSRKKNLS-------KVQQKSRSLC-----------KELLSSGSSWK 157 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh-----hhhhhhhh-------HHHHHHHHHH-----------HHHHhcccccc
Confidence 333455666666776611 1110000 00000000 0111110000 00000000000
Q ss_pred HHhhccCCchhhHHHHHHHHHHHh--------------cCChhhHHHHhcCCccchhhHhhcC----C-------ch---
Q psy12605 288 LIPLLSHKEVKVQTASLRAVGNIV--------------TGTDEQTQVILNCDALSHFPALLTH----P-------KE--- 339 (845)
Q Consensus 288 Lv~lL~~~~~~v~~~al~~L~nl~--------------~~~~~~~~~i~~~~~l~~L~~lL~~----~-------~~--- 339 (845)
--..+..+-+..|+.++-.++ ...+.+++.+.+.|++..+++.+.. . ++
T Consensus 158 ---~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~ 234 (361)
T PF07814_consen 158 ---SPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQ 234 (361)
T ss_pred ---ccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchH
Confidence 000122334445555555552 1123456677778899999998851 1 11
Q ss_pred --hhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHHHHh-hhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC
Q psy12605 340 --KICKEAVWFLSNITAGNQAQVQAVID--AGLLPKIIANL-QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 340 --~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv~lL-~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 414 (845)
..-..++.+|-+.+..+.+....++. .+.++.+...+ ....+ ..+.....++..+.|++.++++.+..+...+
T Consensus 235 ~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~--~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 235 SLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDD--QVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHH--HHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 12345667777777666665555543 33333333332 22100 1344567889999999988877776666554
Q ss_pred ChHHHHHhhC------C--------CCHHHHHHHHHHHHHhhcCChH
Q psy12605 415 AVPLFLRLLM------S--------PHSNVCEQAVWALGNIIGDGPQ 447 (845)
Q Consensus 415 ~i~~Lv~lL~------~--------~~~~v~~~a~~~L~nl~~~~~~ 447 (845)
....+..+.. + ..-+...-++.++-|++..++.
T Consensus 313 l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 313 LGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred hccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence 3333221111 1 1225566677777777766543
No 166
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.61 E-value=0.19 Score=46.34 Aligned_cols=124 Identities=11% Similarity=0.121 Sum_probs=97.4
Q ss_pred hHHHHhcCCccchhhHhhcCCc------hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHPK------EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF 390 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~~------~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~ 390 (845)
+...+++.+|+..|++++.++. .+....++.++.++..+..-.. ...+..++.+++.++.... .+..+..
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~---~d~~i~q 78 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSA---MDASILQ 78 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHcccc---ccchHHH
Confidence 3467888899999999997654 3566677788888766643333 2445667888888888653 3788999
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 391 ~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
.+...|-+++.+++.....+.+.=-++.|+..|+.++++++..++..+-.+-..
T Consensus 79 ~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 79 RSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999999999998887777777777899999999999999999998887776543
No 167
>KOG1967|consensus
Probab=95.55 E-value=0.095 Score=60.36 Aligned_cols=218 Identities=17% Similarity=0.146 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC------------Ch
Q psy12605 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP------------SM 211 (845)
Q Consensus 144 ~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~------------~~ 211 (845)
+.+.++.|+..|..+... --.|..-....+...++++|+.+ ++-..++.++.-+..+.++.. +.
T Consensus 787 s~dls~~al~~l~Wv~Ka-Ll~R~~~~s~~ia~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKA-LLLRNHPESSEIAEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred CcchhhHHHHHHHHHHHH-HHHcCCcccchHHHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 455666666666555311 00000000111234456666553 233445555555444432211 11
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh--cCchhhHH
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID--SGVVPSLI 289 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv 289 (845)
......+|.|++.+...+.. .+..-..+|+++-.+-+. +.+.. ..++|.|+
T Consensus 863 RfF~~ivP~l~~~~~t~~~~-------------------------~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLL 915 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGS-------------------------QKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLL 915 (1030)
T ss_pred HHHHhhHHHHHHHhccCCcc-------------------------chhHHHHHHHHHHhcCCH--HhhccchhhHHHHHH
Confidence 23456788888888755554 666677777776654443 22211 25678888
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc---hhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK---EKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~---~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
+.|+-++..++..+++++.-+....+.....=.+ -.+|.++.+=.+.+ ..+|..|+.+|..+....|...-.....
T Consensus 916 q~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~ 994 (1030)
T KOG1967|consen 916 QALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP 994 (1030)
T ss_pred HhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH
Confidence 9999999999999999999987665543322222 35666666666554 6789999999999977555443333456
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
.++..|+..|.+. ..-+|.+|..+=.+
T Consensus 995 ~Vl~al~k~LdDk-----KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 995 LVLRALIKILDDK-----KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHhhhccCcH-----HHHHHHHHHHHhhh
Confidence 6778888888764 45778888765444
No 168
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.40 E-value=1.2 Score=44.53 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhc-------cCCc-----hhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLL-------SHKE-----VKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL-------~~~~-----~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
.++.|+.-|+.--+..++..-.+... |.+..|++=+ ..++ ..-...|+..+..++++ ++.+..+++
T Consensus 11 ~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~Fl~ 89 (262)
T PF04078_consen 11 TRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMPFLK 89 (262)
T ss_dssp HHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHHHH
T ss_pred hHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHHHHH
Confidence 66777777766555555555555554 5554443322 2221 23345777788888775 666888999
Q ss_pred CCccchhhHhhcCC-----chhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 324 CDALSHFPALLTHP-----KEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 324 ~~~l~~L~~lL~~~-----~~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
+.+.-.|..+|+.. -+.+|-.++++++.+... +++.+..+.+.+++|..++.+..+ +.-.|..|..++.
T Consensus 90 a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-----selSKtvAtfIlq 164 (262)
T PF04078_consen 90 AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-----SELSKTVATFILQ 164 (262)
T ss_dssp TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS------HHHHHHHHHHHH
T ss_pred cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-----cHHHHHHHHHHHH
Confidence 98888888888543 267889999999998764 456777788999999999999885 6788889999999
Q ss_pred HHhcCChHh-------HHHHHHcCChHH-HHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 398 NIASGTSAQ-------TQEVVAAGAVPL-FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 398 ~l~~~~~~~-------~~~l~~~g~i~~-Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 453 (845)
.+..++... .+...-...+.. +..+...+++.+.+..++|-..++.+. ..|+.+.
T Consensus 165 KIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALR 227 (262)
T ss_dssp HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHH
T ss_pred HHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHH
Confidence 987654321 111111112222 334456677888888888888887654 4454443
No 169
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.40 E-value=2.4 Score=50.25 Aligned_cols=239 Identities=16% Similarity=0.201 Sum_probs=129.2
Q ss_pred HHHcCChHHHHHhhCCC-----ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 127 VVAAGAVPLFLRLLMSP-----HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+.+.|++..+++++.+. ..++....+..|...+.- +.+|+.+.+.|+++.|+..+....
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l--------------- 176 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRAL--------------- 176 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHH---------------
Confidence 34468999999999763 345666777777777744 789999999999999997774211
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh---cCChhhHHH
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT---DGGNDQIQM 278 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~~~ 278 (845)
............++.+..+-.++...+.+ -....... .... +...+.
T Consensus 177 -~~~~~~~~~~i~E~LL~IiE~ll~ea~~~-------------------------~~~~~~~~-~~~~~~~~~~~~~--- 226 (802)
T PF13764_consen 177 -QANQNSSQAEIAEQLLEIIESLLSEANSS-------------------------SSSESKSS-SSLSGSEEQDKEQ--- 226 (802)
T ss_pred -hCccccccchHHHHHHHHHHHHHHHHhhh-------------------------hhhhcccc-ccccccccccHHH---
Confidence 00000111122333443333333221111 00000000 0000 112222
Q ss_pred HHhcCchhhHHhhc----cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh--c---CCchhhHHHHHHHH
Q psy12605 279 VIDSGVVPSLIPLL----SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL--T---HPKEKICKEAVWFL 349 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL--~---~~~~~~~~~a~~~L 349 (845)
+..+++.+ ...++.+....++.|.+++.++++..+.+++. + ...+++= + .++.... +.++
T Consensus 227 ------v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F-~p~l~f~~~D~~~~~~~~~~---Le~F 295 (802)
T PF13764_consen 227 ------VEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F-KPYLDFDKFDEEHSPDEQFK---LECF 295 (802)
T ss_pred ------HHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H-HHhcChhhcccccCchHHHH---HHHH
Confidence 23333333 33468899999999999999988877766643 1 2222211 1 1122222 3444
Q ss_pred HHhhcC------ChHHHHHHHhcCChHHHHHHhhhccccc---CChhHHH--------HHHHHHHHHhcCChHhHHHHHH
Q psy12605 350 SNITAG------NQAQVQAVIDAGLLPKIIANLQKVGRIV---LRPNLQF--------EAAWALTNIASGTSAQTQEVVA 412 (845)
Q Consensus 350 ~nl~~~------~~~~~~~l~~~~~i~~Lv~lL~~~~~~~---~~~~v~~--------~a~~~L~~l~~~~~~~~~~l~~ 412 (845)
+.++.+ ....++.+++.|++...+++|..+.+.. .+++.+. .+...|.-++.++...... +.
T Consensus 296 ~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~ 374 (802)
T PF13764_consen 296 CEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLL-IA 374 (802)
T ss_pred HHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HH
Confidence 444332 1456677899999999999998764431 2333333 3566666677766544433 55
Q ss_pred cCChHHHHHhhC
Q psy12605 413 AGAVPLFLRLLM 424 (845)
Q Consensus 413 ~g~i~~Lv~lL~ 424 (845)
.+++ .+++.|+
T Consensus 375 ~~~l-~~lH~LE 385 (802)
T PF13764_consen 375 EQLL-PLLHRLE 385 (802)
T ss_pred hhHH-HHHHHhh
Confidence 5666 4444444
No 170
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.40 E-value=0.067 Score=46.62 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=58.6
Q ss_pred CCchHHhhhhc-cccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhc
Q psy12605 738 GVIPPFCDLLS-CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 738 ~~i~~L~~~L~-~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
.++..|+++|. +.|+.++..|+.-|..+++..+.+ ...+.+.|+-+.+..|++|+|++|+..|...++++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g----r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG----RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG----HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH----HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 36777888884 468888888888899999987765 577899999999999999999999999999988765
No 171
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.18 E-value=0.64 Score=44.80 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCC-hhhHHh
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV-VPPLLS 180 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~-i~~Lv~ 180 (845)
+|.+|..++.+++.++...+...+ ..+|.+...|.++++.+|.+|+.+|..|...+. +.-.|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence 478999999999999976544333 368999999999999999999999999975532 111132 366667
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 181 FIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 181 ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
++..+ +.+++..|..++..+....
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHhc
Confidence 77555 5689999999999998864
No 172
>KOG3665|consensus
Probab=95.05 E-value=0.88 Score=53.52 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=105.1
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhH-HHHHHHhhcCCCh-h
Q psy12605 437 ALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL-LPALNILIHHHDT-S 514 (845)
Q Consensus 437 ~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~-l~~l~~ll~~~d~-~ 514 (845)
+|+++....+.....+.+.|++..+...++.....++.+.+...+.|++...+..+.......+ ...+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999998888899999999999999765322221111111 1233344444444 4
Q ss_pred HHHHHH--HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhh
Q psy12605 515 VSIYLW--LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592 (845)
Q Consensus 515 v~~~~~--l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll 592 (845)
..-.++ +..+..+.+..........+...+.+....- ...........-+.+-+..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~--------------------~~~~~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRW--------------------LTSEIRVINDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhcc--------------------CccceeehhhhhcchhHHHHh
Confidence 332233 3322221111111111112222222222111 111111111112222144444
Q ss_pred c-CCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHh
Q psy12605 593 T-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 634 (845)
Q Consensus 593 ~-~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll 634 (845)
. +..+..+..|.|++.+++..++++.+.+.+.|+++.+.++-
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 4 45678899999999999999888888899999998887654
No 173
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.01 E-value=1.7 Score=47.21 Aligned_cols=108 Identities=9% Similarity=0.178 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-C---CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhH
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-H---KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA 332 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~ 332 (845)
+...|+..+......++.....+.+.|+++.++..+. . ++.++....-.+|+.+|-++. ..+.+.+.+.++.+.+
T Consensus 125 v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~ 203 (379)
T PF06025_consen 125 VFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFE 203 (379)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHH
Confidence 7778888888888888888899999999999999887 3 456677777889999988744 4567788899999999
Q ss_pred hhcCCch-------hhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 333 LLTHPKE-------KICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 333 lL~~~~~-------~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
++.+++- +.-...-..+-.|.+|.+..+..+++
T Consensus 204 if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 204 IFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9876431 22222334555677888877666554
No 174
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.94 E-value=1.2 Score=42.98 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH
Q psy12605 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~ 137 (845)
+|.++..++..+..++..-++ .++ ..+|.+...| .++++.+|..|+.+|..|...+.-..+ ...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-~ve-----~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-LVE-----PYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-HHH-----hHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHH
Confidence 577888999999988775533 222 3588999999 578899999999999999864321111 12347888
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCC
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
.++.+++++++..|..++..+...
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999865
No 175
>KOG2956|consensus
Probab=94.91 E-value=0.75 Score=49.38 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=115.6
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 48 MLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 48 ~lv~~~l~~~-~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
+++ ..+.+. ..+.+..|+..|..++..+.-..+++.. ..++..+++.|..+.+..++..|+++|..++... ...
T Consensus 290 ~~l-~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q---~~~ 364 (516)
T KOG2956|consen 290 DLL-KEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ---PAR 364 (516)
T ss_pred HHH-HhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc---hHh
Confidence 444 344444 4567778888899988866443343322 2357788999965577889999999999999653 333
Q ss_pred HHH--cCChHHHHHhhCCCChhHH-HHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 127 VVA--AGAVPLFLRLLMSPHSNVC-EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 127 i~~--~g~i~~L~~lL~s~~~~v~-~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
+++ .-+|..++..-.++.+++. .++=.|+.-++...|..+ |..+..++... +...-..++..+..+++
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFE 435 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHh
Confidence 443 2356666666566555544 444446666776666432 22222222222 33455566777888887
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~ 269 (845)
.-....-......+.|.+++...+.+.. ++..|..||.++-
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S~SS~-------------------------VRKtaVfCLVamv 476 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDSTSST-------------------------VRKTAVFCLVAMV 476 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcCchHH-------------------------hhhhHHHhHHHHH
Confidence 6643333445567888888888887777 8888999988764
No 176
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.79 E-value=0.09 Score=51.28 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=81.1
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC--------CChhHHHHHHHHHHH
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS--------DRPNLQFEAAWALTN 115 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~~~i~~~a~~~L~~ 115 (845)
.+.+.++ ..+.+..... ..+..|+..+..++-.-++.+++.|++..|+.+|..- .+...+..++.||..
T Consensus 66 ~~p~~~i-~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYI-KKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHH-HHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHH-HHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 3455667 7776665442 5677777777765434467888999999999988432 234688899999999
Q ss_pred HhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 116 IASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 116 la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
+... ......++. .+++..|+..|.+++..++..++..|..+|
T Consensus 143 l~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9854 556666666 789999999999999999999999999886
No 177
>KOG3036|consensus
Probab=94.76 E-value=4.7 Score=39.77 Aligned_cols=148 Identities=10% Similarity=0.136 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-----CchhhHHHHHHHHHHhhcCCh-HHHHHHHhcCChHHH
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-----PKEKICKEAVWFLSNITAGNQ-AQVQAVIDAGLLPKI 372 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L 372 (845)
=...|+..+..++++ ++.+..+.++.+--.+-.+|.. +.+-+|-.++++++.+...++ +....+...+++|.+
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 455777777777766 5557777777655555556532 457899999999999877654 466677889999999
Q ss_pred HHHhhhcccccCChhHHHHHHHHHHHHhcCChHh---H-----HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 373 IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---T-----QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 373 v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~---~-----~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
++.+..+ +...|..|..++..|..++... + -..+..-.-..+.++.+.++..+...++.+.-+++.
T Consensus 174 Lrime~G-----SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd- 247 (293)
T KOG3036|consen 174 LRIMESG-----SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD- 247 (293)
T ss_pred HHHHhcc-----cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-
Confidence 9999986 6788899999999988765421 1 111111122334566667788888899998888874
Q ss_pred ChHHHHHHH
Q psy12605 445 GPQLRDYVI 453 (845)
Q Consensus 445 ~~~~~~~l~ 453 (845)
++..|.++.
T Consensus 248 nprar~aL~ 256 (293)
T KOG3036|consen 248 NPRARAALR 256 (293)
T ss_pred CHHHHHHHH
Confidence 455555543
No 178
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.63 E-value=0.044 Score=35.38 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=25.4
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcC
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIG 160 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~ 160 (845)
+|.++++++++++++|..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999974
No 179
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.50 E-value=6.2 Score=44.54 Aligned_cols=288 Identities=15% Similarity=0.193 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH
Q psy12605 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 138 (845)
Q Consensus 59 ~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~ 138 (845)
...+..|+..+++.+..-+-..+..+ ...--.++.....++.|..+...|..+..+......... ..+.+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence 35677788888887765432222222 222234554444567899999999888876543211111 11122
Q ss_pred hhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC--------------------------CHHHH
Q psy12605 139 LLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI--------------------------PISFL 191 (845)
Q Consensus 139 lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~--------------------------~~~~~ 191 (845)
.+. .+.++-...-+.+|..|+.++.+.. .++.+..+.|..++.... +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 223 2334334455666666665655552 245667777776664211 11223
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG 271 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 271 (845)
......+.|+.+.+....+.....+.+..++.+........ ....++..+..+..+
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~------------------------di~~~L~vldaii~y 207 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED------------------------DIEACLSVLDAIITY 207 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH------------------------HHHHHHHHHHHHHHc
Confidence 34445555555555444444445555555555543322220 223333333322221
Q ss_pred ChhhHHHHHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC------CchhhHH
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH------PKEKICK 343 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~------~~~~~~~ 343 (845)
.. +-.+.++.++..|.+ ...+....+.+++.||+...-.. .++..|..+|.+ .+..+.+
T Consensus 208 ~~------iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lR 274 (464)
T PF11864_consen 208 GD------IPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLR 274 (464)
T ss_pred Cc------CChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHh
Confidence 10 011223344444422 23367788999999998643221 244567777722 2355667
Q ss_pred HHHHHHHHhhcCChHHH-HHHHhcC--ChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 344 EAVWFLSNITAGNQAQV-QAVIDAG--LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~-~~l~~~~--~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
.|...+..+..+..... ..+--.- +++.+...++.. ++.+-.+....+.++.
T Consensus 275 GAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-----~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 275 GAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-----SPRVDYEILLLINRLL 329 (464)
T ss_pred hHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-----CCeehHHHHHHHHHHH
Confidence 88888888765542211 1111122 667777777753 5566666666666665
No 180
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.48 E-value=1.1 Score=47.38 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=109.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC-CCCh
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP-PPSM 211 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~ 211 (845)
..+..+.+.....|+.++..+.++..... ..+.+.+ ...++.+.+.++.+.. +-+..|+.++.-++-.-.+ ....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence 34455555667888888888887764432 2223321 1246677777777654 4455666666666655321 2223
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHH---hhcCChhhHHHHHhcCchhhH
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSY---LTDGGNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~---l~~~~~~~~~~~~~~g~i~~L 288 (845)
.......|.|.+.+.+....+. ++..++.+|+- +...+.+.....+ ..++.+
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~-----------------------~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~i 179 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPK-----------------------ARAACLEALAICTFVGGSDEEETEELM--ESLESI 179 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchH-----------------------HHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHH
Confidence 4556788888888876543311 43444444443 3333322222100 111111
Q ss_pred --Hhhc----------cCCchhhHHHHHHHHHHHhcCChhh-HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 289 --IPLL----------SHKEVKVQTASLRAVGNIVTGTDEQ-TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 289 --v~lL----------~~~~~~v~~~al~~L~nl~~~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
.... ..+++.+..+|+.+++-|...-+.. ..... ...++.|..+|.+.+.++|..|..+|+=+
T Consensus 180 f~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 180 FLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1111 1224679999999999988655442 12222 24789999999999999999998877755
No 181
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.32 E-value=10 Score=42.97 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=82.8
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+..++ ...+ ++++.+..|...+.++....++ ..+ ..+..++.|+ .+++..||..|...|-.+|.+++++.
T Consensus 24 ~y~~il-~~~k-g~~k~K~Laaq~I~kffk~FP~-l~~-----~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 24 DYKEIL-DGVK-GSPKEKRLAAQFIPKFFKHFPD-LQE-----EAINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHH-HGGG-S-HHHHHHHHHHHHHHHCC-GG-GHH-----HHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHH-HHcc-CCHHHHHHHHHHHHHHHhhChh-hHH-----HHHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 355555 4444 4688888899999988776543 222 2488899999 47788999999999999999988888
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc--CCCCHHHHHHHHHHHHHhh
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--PDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--~~~~~~~~~~a~~~L~~l~ 202 (845)
..++ ..|+++|.+.++.-...+=++|..+-..++. . .+..+..-+. ...+..+|+.++..|..=.
T Consensus 95 ~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--~------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 95 SKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--G------TLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--H------HHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred hHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--H------HHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 7755 5899999998876666666666555533332 1 1223333332 1224568888887776533
Q ss_pred c
Q psy12605 203 R 203 (845)
Q Consensus 203 ~ 203 (845)
.
T Consensus 162 ~ 162 (556)
T PF05918_consen 162 K 162 (556)
T ss_dssp G
T ss_pred h
Confidence 3
No 182
>KOG4653|consensus
Probab=94.26 E-value=0.54 Score=54.10 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=131.2
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
++..+..++++.+.++.+++..|..+.... .....+...+++...++.|.+.|+-+--.|...+..+|.- .
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------Y 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------c
Confidence 455566667888899999999999998643 3345566678999999999999887777777755555332 3
Q ss_pred hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
..+++|.+.+...+.... ..++.+.....++.+++..-.+......+ -.+..++..+++++...|..++..+|+++.-
T Consensus 800 ~e~il~dL~e~Y~s~k~k-~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKK-LQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccC-CCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 456788888865543211 12355555667888877655555554444 5667788888888888899999999998852
Q ss_pred ChH-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 445 GPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 445 ~~~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
... ..+.+ ..++..++.+...+.+.-++|.++-.+..+-++..
T Consensus 878 ~a~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 878 LAFQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HhhhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 211 11111 12345556666677777888888888888877653
No 183
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.23 E-value=0.95 Score=48.07 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=130.0
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh-----HHHHHhc--CChhhHHhhhcCCCCHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL-----RDYVINM--GVVPPLLSFIKPDIPISFLRNVTWV 197 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~-----r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~ 197 (845)
..+...+.++.|+..|..-+-+.+..+..+..++-...... .+.+... .++..|+..-..+ ++.-.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~---dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP---DIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST---TTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc---cccchHHHH
Confidence 34556689999999999888899999999888887654332 2233322 2333333333322 455555555
Q ss_pred HHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHH
Q psy12605 198 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ 277 (845)
Q Consensus 198 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 277 (845)
|...++... ........+.+-.+.+.+..++-+ +..+|..++..+-........
T Consensus 147 lRec~k~e~-l~~~iL~~~~f~~ff~~~~~~~Fd-------------------------iasdaf~t~~~llt~hk~~~a 200 (335)
T PF08569_consen 147 LRECIKHES-LAKIILYSECFWKFFKYVQLPNFD-------------------------IASDAFSTFKELLTRHKKLVA 200 (335)
T ss_dssp HHHHTTSHH-HHHHHHTSGGGGGHHHHTTSSSHH-------------------------HHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHhhHH-HHHHHhCcHHHHHHHHHhcCCccH-------------------------hHHHHHHHHHHHHhccHHHHH
Confidence 666555431 011111122222233333333333 888888888875544444433
Q ss_pred HHHhc---CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh---HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHH
Q psy12605 278 MVIDS---GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ---TQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351 (845)
Q Consensus 278 ~~~~~---g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~---~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~n 351 (845)
.+... ..+.....+|.+++--++..+++.|+.+....... ...+-+..-+..++.+|.+++..++-+|..++--
T Consensus 201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 33343 45677888889999889999999999998764332 2334445678889999999999999999988887
Q ss_pred hhcCC--hHHHHHHHhcCChHHHHHHhhhc
Q psy12605 352 ITAGN--QAQVQAVIDAGLLPKIIANLQKV 379 (845)
Q Consensus 352 l~~~~--~~~~~~l~~~~~i~~Lv~lL~~~ 379 (845)
.+++. ++.+..++..+ =+.|++++.+-
T Consensus 281 FVANp~K~~~I~~iL~~N-r~kLl~fl~~f 309 (335)
T PF08569_consen 281 FVANPNKPPPIVDILIKN-REKLLRFLKDF 309 (335)
T ss_dssp HHH-SS-BHHHHHHHHHT-HHHHHHHHHTT
T ss_pred HHhCCCCChHHHHHHHHH-HHHHHHHHHhC
Confidence 66642 22223332111 24566666543
No 184
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=93.94 E-value=1.3 Score=40.99 Aligned_cols=120 Identities=11% Similarity=0.130 Sum_probs=90.7
Q ss_pred hhcHHHHHHHHHcCCCh------HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCC-ChhHHHHHHHHHHH
Q psy12605 43 QVNLDMLVVEAARKDNP------ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD-RPNLQFEAAWALTN 115 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~------~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~ 115 (845)
..++..++ +++.++.. +..-.++.++..+..++. -.+ .......|.+.+.+.+.+. ++.+...|+..|-+
T Consensus 10 ~~Gl~~L~-~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 10 RDGLTLLI-KMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred ccCHHHHH-HHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-Cch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 45677777 78877652 455557888888887652 223 3456667899999996444 67899999999999
Q ss_pred HhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh
Q psy12605 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 116 la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
+...++..-..+.+.=-++.|+.+|+.++++++..|+..+-.+-...++.
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99876665666666778999999999999999999998887776555444
No 185
>KOG1820|consensus
Probab=93.89 E-value=1.7 Score=51.39 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=121.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG 131 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g 131 (845)
..+.+.+.+.+.+|+..+...+..... .-.-.-.|.+-.++.....+.|-.+...|+.+|..++........... .+
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~--~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~ 336 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKK--EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KN 336 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhcccc--ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hh
Confidence 567789999999999999999886540 011113456666777765667778889999999999976554433322 36
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC-CCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD-PPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 210 (845)
..|.++.-+......+++.++.++-.++...+.. ..++.+..++.+.++ .++..+...+....+..+ ....
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~-------~~~~~I~e~lk~knp-~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNSTPLS-------KMSEAILEALKGKNP-QIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHhcCCCh-hhHHHHHHHHHHHHhhcCCcCcc
Confidence 8999999999999999998888887777533211 246777788888765 667666666666555554 3334
Q ss_pred hhHHhhHHHHHHhhcccCCch
Q psy12605 211 MSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~ 231 (845)
......++|.++.+..+.+.+
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~ 429 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKD 429 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHH
Confidence 456778999999999999998
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.85 E-value=0.36 Score=48.25 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHhh
Q psy12605 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLL 423 (845)
Q Consensus 345 a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~lL 423 (845)
|+..+..++. .++.+..++++.+.--|..+|........-..+|..+.+.++.++. ++++....+.+.+.+|..++.+
T Consensus 70 aLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 70 ALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 3444445544 5777788999998878888887654222235788899999999997 5667888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCChHHHHHHHh-------CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 424 MSPHSNVCEQAVWALGNIIGDGPQLRDYVIN-------MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 424 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.++.--+..|...+..+..+.....-.... ..++..++..+..+.+..+.++++++...|+.++
T Consensus 149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999888889999999887765433222111 1234444444445556678888888888887655
No 187
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.66 E-value=1.4 Score=46.47 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-ChhhH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-TSAQT 124 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-~~~~~ 124 (845)
+..++...+.+.++.++..|+++|.-.+-.+++ ... ..++.+.+.++ .+++.++..|+.++..+... ..+..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~-~a~-----~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKE-LAK-----EHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH-HHH-----HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 456665788999999999999999987665543 222 23788888884 56889999999999998742 22222
Q ss_pred HHHH-------HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHH-hhhcCCC--CHHHHHHH
Q psy12605 125 QEVV-------AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL-SFIKPDI--PISFLRNV 194 (845)
Q Consensus 125 ~~i~-------~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv-~ll~~~~--~~~~~~~a 194 (845)
.... ....+..+.+.+.+.+++++..|+..++.|--.+.-.- ....+..|+ .+.+..+ +..++...
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 2111 23567788889999999999999999999864432111 011233333 2223222 34677777
Q ss_pred HHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCC
Q psy12605 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 229 (845)
...+-..+......+ .......+|++..+....+
T Consensus 177 ~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 177 SVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCcc
Confidence 777888887663232 3445677788777766543
No 188
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.61 E-value=0.11 Score=33.49 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=25.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 416 VPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 416 i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+|.+++++++++++||..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
No 189
>KOG3665|consensus
Probab=93.43 E-value=8.1 Score=45.68 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=106.0
Q ss_pred HHHHhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChh--hHHHHhcCCccchhhHhhcCCc-h
Q psy12605 264 ALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDE--QTQVILNCDALSHFPALLTHPK-E 339 (845)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~--~~~~i~~~~~l~~L~~lL~~~~-~ 339 (845)
++.+++...++..+.+.+.|+...+...++. ...+++..+++.++|++...+. .......... ..+-.++..-+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 5667777778888899999999999999964 5678999999999999854322 1111111111 22333443333 3
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHH-
Q psy12605 340 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL- 418 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~- 418 (845)
+.-..|+..|+.+..+.++.. ....+..+...+......-+..............
T Consensus 573 ersY~~~siLa~ll~~~~~~~------------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~ 628 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTT------------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPR 628 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCc------------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchh
Confidence 666778888888766543311 1111111111111111111111111111112222
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC
Q psy12605 419 FLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP 467 (845)
Q Consensus 419 Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~ 467 (845)
+.+++. +..+..+.+|+|++.++....++....+.+.|+++.+...-..
T Consensus 629 ~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 629 ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 444554 4567789999999999999988888889999998888776543
No 190
>KOG4653|consensus
Probab=93.36 E-value=1.5 Score=50.56 Aligned_cols=221 Identities=14% Similarity=0.138 Sum_probs=127.3
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcC
Q psy12605 94 VECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173 (845)
Q Consensus 94 v~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g 173 (845)
+..+ .++.+.+|..++..|+.+... .+....+...+++...+..|++.++-+--.|+..+..+|.- ....
T Consensus 733 i~sl-~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~ 802 (982)
T KOG4653|consen 733 ISSL-HDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPED 802 (982)
T ss_pred HHHh-cCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchh
Confidence 3344 355667899999999999864 46777788899999999999999999999999988888843 2334
Q ss_pred ChhhHHhhh-cCCC--CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHh
Q psy12605 174 VVPPLLSFI-KPDI--PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250 (845)
Q Consensus 174 ~i~~Lv~ll-~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (845)
++|.+.+.- +... ..+.+-....++.++.+..++ -.....+..+.++....+++|..
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~------------------- 862 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHE------------------- 862 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHH-------------------
Confidence 566666532 2111 123333344555555543321 11223446677777777755554
Q ss_pred hhhhHHHHHHHHHHHHHhhcCChhhHH-HHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcC---C
Q psy12605 251 LVSKMKILVDTVWALSYLTDGGNDQIQ-MVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNC---D 325 (845)
Q Consensus 251 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~---~ 325 (845)
-+..++..++.+.....-... .+. .++..++.+. .++++.+|.+|+..+..+..+.+.-.-.+... .
T Consensus 863 ------~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~D 934 (982)
T KOG4653|consen 863 ------FRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLID 934 (982)
T ss_pred ------HHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 444555555554432111000 111 2233444444 35678899999999999876644321111111 1
Q ss_pred ccchhhHhh-cCCchhhHHHHHHHHHHh
Q psy12605 326 ALSHFPALL-THPKEKICKEAVWFLSNI 352 (845)
Q Consensus 326 ~l~~L~~lL-~~~~~~~~~~a~~~L~nl 352 (845)
....+.... .+.++.++..|+.++-.+
T Consensus 935 l~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 935 LDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 112222222 334556666666666554
No 191
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.13 E-value=6.1 Score=42.85 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=62.7
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC-CCh-hHHHHHHHHHHHhcCCChhhHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHS-NVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s-~~~-~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+..++.=|+++....+|+.++--|+.-+. +++.+..+..+|.+..+++.+.. ++. .....++.++.-++.+. ..-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchh
Confidence 56666667545566889999888888876 58999999999999999999944 433 33444455555555444 2334
Q ss_pred HHHhcCChhhHHhhhc
Q psy12605 168 YVINMGVVPPLLSFIK 183 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~ 183 (845)
.+.+.+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 4445555666677666
No 192
>KOG2956|consensus
Probab=92.55 E-value=4 Score=44.13 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=90.8
Q ss_pred ChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhh
Q psy12605 174 VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVS 253 (845)
Q Consensus 174 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (845)
++..+++.|+...+...+..|...|..+|++.. ..-+...+-++..+...-.+..+.+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~l~DstE~ai~K~Leaa~ds~~~v--------------------- 387 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-ARLFDSTEIAICKVLEAAKDSQDEV--------------------- 387 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-HhhhchHHHHHHHHHHHHhCCchhH---------------------
Confidence 355677888876677889999999999998773 2222233344444444444433331
Q ss_pred hHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh--hhHHHHhcCCccchhh
Q psy12605 254 KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD--EQTQVILNCDALSHFP 331 (845)
Q Consensus 254 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~i~~~~~l~~L~ 331 (845)
+...+-.++..++.+.+... +..+.+++-..+.+....+++.+..++..-. +.-..+ ..+.|.++
T Consensus 388 ---~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~i 454 (516)
T KOG2956|consen 388 ---MRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVI 454 (516)
T ss_pred ---HHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHH
Confidence 33444444555666555421 2233444444677777788888888875432 221211 25889999
Q ss_pred HhhcCCchhhHHHHHHHHHHh
Q psy12605 332 ALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 332 ~lL~~~~~~~~~~a~~~L~nl 352 (845)
+...+.+..+|+.|.+||..+
T Consensus 455 qay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHH
Confidence 999999999999999999987
No 193
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.50 E-value=3.2 Score=41.93 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhc
Q psy12605 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 464 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~l 464 (845)
......|...|.-++--++..+..+.....+..|+++|+ ...+.++.+++.+|-.+..+++.....+.+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 334556777888888888889999999999999999995 4678999999999999999999988899999999999999
Q ss_pred cCCCC-ChhHHHHHHHHHHHhh
Q psy12605 465 IKPDI-PISFLRNVTWVIVNLC 485 (845)
Q Consensus 465 l~~~~-~~~~~~~~~~~l~nL~ 485 (845)
++..+ +.+++-.++-+|.-..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HccccccHHHhHHHHHHHHHHH
Confidence 98644 4555556655554433
No 194
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.50 E-value=0.63 Score=43.68 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=92.0
Q ss_pred ChhhHHhhhcC-CCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhh
Q psy12605 174 VVPPLLSFIKP-DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252 (845)
Q Consensus 174 ~i~~Lv~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (845)
.++.++..+.. ..+.++|..+.-++..+-.. ........+-..+...+...+.+
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d--------------------- 58 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMD--------------------- 58 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCC---------------------
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccch---------------------
Confidence 35566666654 44557888888888877311 11111223333444444444444
Q ss_pred hhHHHHHHHHHHHHHhhcCChhhH-HHHHhcCchhhHHhhcc--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccch
Q psy12605 253 SKMKILVDTVWALSYLTDGGNDQI-QMVIDSGVVPSLIPLLS--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329 (845)
Q Consensus 253 ~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~ 329 (845)
-...++.++..+-...++.. +.+...|+.+.++.+.. .++..++.+++++|..-|.+ ...+..+. ..+++.
T Consensus 59 ----~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~~I~-~~~~~~ 132 (157)
T PF11701_consen 59 ----SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRTFIS-KNYVSW 132 (157)
T ss_dssp ----HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHHCCH-HHCHHH
T ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHHHHH-HHHHHH
Confidence 34456666666655555543 34556789999999997 78889999999999987654 45555444 458899
Q ss_pred hhHhhc-CCchh-hHHHHHHHHHH
Q psy12605 330 FPALLT-HPKEK-ICKEAVWFLSN 351 (845)
Q Consensus 330 L~~lL~-~~~~~-~~~~a~~~L~n 351 (845)
|-+.++ ++++. +|..|+-.|..
T Consensus 133 L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 133 LKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHHhc
Confidence 999995 45555 78888777764
No 195
>KOG1788|consensus
Probab=92.37 E-value=30 Score=41.33 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc-
Q psy12605 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI- 382 (845)
Q Consensus 304 l~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~- 382 (845)
..+|-.+...++++.+.+.++.++..++.++ -+++-|...+..+..+....+.+.. ..-+-.++..|+++.-.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 5677788888888888899998888888888 3456677777777777555444211 12234566666653210
Q ss_pred ------cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC
Q psy12605 383 ------VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424 (845)
Q Consensus 383 ------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~ 424 (845)
.....+......+++.+..-+...+..+.+.++...|...|.
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 011234445566777777666666777888888888776664
No 196
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.16 E-value=3.2 Score=43.76 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=109.1
Q ss_pred hhHHHHHH-hhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 215 IELLPALN-ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 215 ~~~l~~L~-~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
.+.+..|+ ..+.+.++. ++..+..+|+-.+-.+.+... ..++.+...+.
T Consensus 25 ~~ll~~lI~P~v~~~~~~-------------------------vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~ 74 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPA-------------------------VRELALKCLGLCCLLDKELAK-----EHLPLFLQALQ 74 (298)
T ss_pred HHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHH
Confidence 35665554 667788887 888888888776655543222 23566777776
Q ss_pred CCchhhHHHHHHHHHHHhcCChh-hHHHH-------hcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDE-QTQVI-------LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~-~~~~i-------~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
.+++.++..|++++..+....+. ..... .....+..+.+.+.+.+++++..|+..++.+.-...-.- .
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~ 150 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----P 150 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----H
Confidence 67899999999999998753321 11111 122466778888888899999999999998754432111 1
Q ss_pred cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
..++..|+-...++. ..+++.++.--...+-..+..+++++. .+...+++.+-.+...
T Consensus 151 ~~vL~~Lll~yF~p~-t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 151 PKVLSRLLLLYFNPS-TEDNQRLRQCLSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHcCcc-cCCcHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhC
Confidence 234455544444432 124567777777777777777765543 4444455555555443
No 197
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=4.9 Score=44.30 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=81.9
Q ss_pred hcCchhhHHhh-ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChH
Q psy12605 281 DSGVVPSLIPL-LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 281 ~~g~i~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
+.|++..+++. ..+.+.+|+.+|.-+||-+|..+. ..++..+++|+. .+..+|...+.+|+-.|++.-.
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 34667777777 578899999999999999987643 356667788854 5788898888888877776544
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhHHHHHHcCChHHHHHhhCCCCH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQTQEVVAAGAVPLFLRLLMSPHS 428 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~ 428 (845)
.. .+..|-.++.+ .+.-||+.|+-+++-+... +++....+ .+.+..+.+.+.+.++
T Consensus 620 ~~-------a~diL~~L~~D-----~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe 676 (926)
T COG5116 620 KV-------ATDILEALMYD-----TNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHE 676 (926)
T ss_pred HH-------HHHHHHHHhhC-----cHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhH
Confidence 31 12233333444 3678888888888887643 33221111 2345566666665544
No 198
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=91.80 E-value=1 Score=35.75 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcC
Q psy12605 106 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173 (845)
Q Consensus 106 ~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g 173 (845)
.+.|+|+++++++. +.....+-+.+.++.++++.. ++...+|-.|..+|+-++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 56899999999874 555566666899999999987 5678999999999999994 456777766654
No 199
>KOG1832|consensus
Probab=91.73 E-value=4.3 Score=47.04 Aligned_cols=160 Identities=11% Similarity=0.090 Sum_probs=95.1
Q ss_pred HHHHhcCchhhHHhhccC--------CchhhHHHHHHHHHHHhcCChhhHHHHhc-----C---CccchhhHhhc---C-
Q psy12605 277 QMVIDSGVVPSLIPLLSH--------KEVKVQTASLRAVGNIVTGTDEQTQVILN-----C---DALSHFPALLT---H- 336 (845)
Q Consensus 277 ~~~~~~g~i~~Lv~lL~~--------~~~~v~~~al~~L~nl~~~~~~~~~~i~~-----~---~~l~~L~~lL~---~- 336 (845)
+.+...+.+..++++... +..+....|+.+|.-+..- +..+..+.. . .++..+++.-. +
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 445566777777777632 2245677888888766543 333333321 1 25666666552 2
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc------cCChhHHHHHHHHHHHHhcCChHhHHHH
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI------VLRPNLQFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~l 410 (845)
-|++++..|+.++.|+++..++.+...+. .+....++. ........+... .....+
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~--------~v~S~~g~~r~~l~~~~ks~~le~~l~----------~mw~~V 735 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIV--------AVGSQSGDRRIFLGAGTKSAKLEQVLR----------QMWEAV 735 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhh--------hccccCCCccccccCCCchHHHHHHHH----------HHHHHH
Confidence 37999999999999998887665544332 111111100 001111111111 223455
Q ss_pred HHcCChHHHHHhhCCCCH-----HHHHHHHHHHHHhhcCChHHHHHHHhCC
Q psy12605 411 VAAGAVPLFLRLLMSPHS-----NVCEQAVWALGNIIGDGPQLRDYVINMG 456 (845)
Q Consensus 411 ~~~g~i~~Lv~lL~~~~~-----~v~~~a~~~L~nl~~~~~~~~~~l~~~g 456 (845)
..+.||..|+++|+...| -+|.-|+.+|..+++++ .+|+.+.+-.
T Consensus 736 r~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~-tVrQIltKLp 785 (1516)
T KOG1832|consen 736 RGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD-TVRQILTKLP 785 (1516)
T ss_pred hcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc-HHHHHHHhCc
Confidence 567899999999996543 58899999999999875 5677665543
No 200
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.51 E-value=13 Score=37.49 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=113.3
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
-+..+++.+...+++|..++.++..... -++..+..+.+.++...+.-+...+..+...++... +.+..
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~ 78 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQP 78 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHH
Confidence 3567888999999999999877521111 134455555666665555555566666644443221 12222
Q ss_pred HHHHh--h---hcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCC
Q psy12605 372 IIANL--Q---KVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL-MSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 372 Lv~lL--~---~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
++..+ + ...+.....+.....+.++..++...++.. ...++.+...+ .+.++.++..++.+|..++...
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 22220 0 111111345666677788888888777622 23467777888 7788888889999999888422
Q ss_pred hHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHH-HhHHHHHHHhhcCCCh
Q psy12605 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI-IELLPALNILIHHHDT 513 (845)
Q Consensus 446 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~-~~~l~~l~~ll~~~d~ 513 (845)
+.+ =......+..-+..+....+.+..+..+..+..+......++.. ..++..+.....+.+.
T Consensus 154 --vvd---~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 154 --VVD---FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred --hcc---HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 111 11223444454555555566666666666555554333333333 4455555555555543
No 201
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.29 E-value=1.6 Score=40.97 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=97.5
Q ss_pred hhhHHhhcc--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 285 VPSLIPLLS--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 285 i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
+..++..|. ...+.++..++-++..+. +..++... ..+-+.+-..+...+.+-...+..++..+....++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 344444443 356678888888887774 22222221 123344555555555567778889999998888888888
Q ss_pred HH-hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC-CCCHH-HHHHHHHHHH
Q psy12605 363 VI-DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSN-VCEQAVWALG 439 (845)
Q Consensus 363 l~-~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~-v~~~a~~~L~ 439 (845)
++ ..|+++.++..+.... .+..++..++.++..-|.. +.++..+...+++.|-+++. ++++. ++..|+.+|+
T Consensus 81 l~~~eg~~~~l~~~~~~~~---~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKS---KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CT---S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 86 4777888888887222 4778888888887766543 45666666778999999995 55555 7888888776
Q ss_pred H
Q psy12605 440 N 440 (845)
Q Consensus 440 n 440 (845)
.
T Consensus 156 K 156 (157)
T PF11701_consen 156 K 156 (157)
T ss_dssp H
T ss_pred c
Confidence 4
No 202
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.01 E-value=6.5 Score=46.76 Aligned_cols=223 Identities=14% Similarity=0.251 Sum_probs=135.1
Q ss_pred HHHhcCchhhHHhhccC-----CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc----CCc----hhhHHH
Q psy12605 278 MVIDSGVVPSLIPLLSH-----KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT----HPK----EKICKE 344 (845)
Q Consensus 278 ~~~~~g~i~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~----~~~----~~~~~~ 344 (845)
.+.+.|++..++.++.+ .........++.|..++.- ...++.+++.|+++.|+..+. ... ..+-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 44577889999888854 2334666677777777654 677888999999999998883 323 455555
Q ss_pred HHHHHHHhhcCChH----HHHHHHhcC--------ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHH
Q psy12605 345 AVWFLSNITAGNQA----QVQAVIDAG--------LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVA 412 (845)
Q Consensus 345 a~~~L~nl~~~~~~----~~~~l~~~~--------~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 412 (845)
.+.++-.+...... ......... -+..+++.+.+.. ...++.+....+.+|-.++.++.+..+.+++
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~-~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPF-VRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcc-ccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 55544444322110 000001111 2556666665432 1146888899999999999999888777765
Q ss_pred cCChHHHHHhhC------CCCHHHHHHHHHHHHHhhc------CChHHHHHHHhCCChHHHHhccCCCC-------Ch--
Q psy12605 413 AGAVPLFLRLLM------SPHSNVCEQAVWALGNIIG------DGPQLRDYVINMGVVPPLLSFIKPDI-------PI-- 471 (845)
Q Consensus 413 ~g~i~~Lv~lL~------~~~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~g~l~~L~~ll~~~~-------~~-- 471 (845)
. +-..++ ...++- ..-+.+++.++. .+...++.+++.|+++..++++.... +.
T Consensus 270 ~-----F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eW 343 (802)
T PF13764_consen 270 H-----FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEW 343 (802)
T ss_pred H-----HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHH
Confidence 3 222222 111111 233555666553 33678999999999998888875322 22
Q ss_pred ------hHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 472 ------SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 472 ------~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
+-+..+..+|.-||++-.+.+.. ...+.++.+..|=+
T Consensus 344 k~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEq 386 (802)
T PF13764_consen 344 KEFLSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQ 386 (802)
T ss_pred HHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhc
Confidence 23445667788888876543333 33557766665554
No 203
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=90.99 E-value=1.4 Score=34.95 Aligned_cols=67 Identities=12% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccC
Q psy12605 600 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKT 679 (845)
Q Consensus 600 ~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (845)
.+.|+|+++|+++. +.-++.+.+.++++.++++..
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~-------------------------------------------- 38 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAE-------------------------------------------- 38 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHH--------------------------------------------
Confidence 57899999999864 444555667788998888763
Q ss_pred ccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcC
Q psy12605 680 SPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEG 738 (845)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~ 738 (845)
.++...+|-.|.++|+-++ .+.+-...|.+.|
T Consensus 39 -------------------------~s~v~siRGT~fy~Lglis--~T~~G~~~L~~~g 70 (73)
T PF14668_consen 39 -------------------------NSPVLSIRGTCFYVLGLIS--STEEGAEILDELG 70 (73)
T ss_pred -------------------------hCCccchHHHHHHHHHHHh--CCHHHHHHHHHcC
Confidence 5566788999999999887 6777666666655
No 204
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.85 E-value=2.6 Score=39.70 Aligned_cols=133 Identities=12% Similarity=0.143 Sum_probs=79.6
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
+++.|..+|+.+.++.+|+++.++|+.|..-++-.-+.+... .+.- .-...+.......+...+ +...+++.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~~~~-~~~~~ee~--- 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLPMMG-ISPSSEEY--- 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHhhcc-CCCchHHH---
Confidence 578899999888789999999999999987655433322211 0000 001111122222221111 11122222
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
.-..++..|++.|+.++-..-...++.++.++.+...... .......+|.+...++..++.
T Consensus 83 -y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~ 143 (160)
T PF11865_consen 83 -YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDS 143 (160)
T ss_pred -HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHH
Confidence 2223577888888877655666678888888886653333 667788999999999866556
No 205
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.72 E-value=21 Score=40.35 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.3
Q ss_pred CCCccchhHHHHHHHhhcccCCHHHHHHHHHc--CCchHHhhhhccccHHHHHHHHHHHHHHH
Q psy12605 706 QGEFQTQKEAAWAISNLTISGNRDQVAKLVQE--GVIPPFCDLLSCKDAQVIQVVLDGINNML 766 (845)
Q Consensus 706 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~--~~i~~L~~~L~~~d~~~~~~al~~L~~l~ 766 (845)
..+..+-++|...+..+......+....+--. -+++.|...++.+++.+-...+..+.+++
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 34456667888888888743322333333222 27777888888888877777888888888
No 206
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.59 E-value=17 Score=36.73 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=89.2
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
+|.|+.-+....+++.+...+..|..++.++...... .+..|..+.+.+..+.+.-+.+.+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 5666665656788999999999999999864222222 45667777777777777777787777775544221
Q ss_pred HhcCChhhHHhh---------hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhc-ccCCchhhHHHHHH
Q psy12605 170 INMGVVPPLLSF---------IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI-HHHDTSVSIYLWLS 239 (845)
Q Consensus 170 ~~~g~i~~Lv~l---------l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~~~~~ 239 (845)
+.+..++.. ...+..-+.......++..+|...+. .....++.+...+ .+.++.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~-------- 137 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEV-------- 137 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHH--------
Confidence 223333333 11222334444556788888887633 3456777777777 555555
Q ss_pred HhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 240 IIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
++..++.++..+..
T Consensus 138 -----------------~~alale~l~~Lc~ 151 (234)
T PF12530_consen 138 -----------------AQALALEALAPLCE 151 (234)
T ss_pred -----------------HHHHHHHHHHHHHH
Confidence 77777777777763
No 207
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=90.59 E-value=5.7 Score=38.08 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHhcCChh-----hHHHHh-c-----CCccchhhHh-hcCCchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 298 KVQTASLRAVGNIVTGTDE-----QTQVIL-N-----CDALSHFPAL-LTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 298 ~v~~~al~~L~nl~~~~~~-----~~~~i~-~-----~~~l~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
++|..|+.+|..++...+. .-..+. + ...-+.|+.+ +.++++.+|..|+.++..+..+........-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3788899999998876221 111122 1 1233444444 47889999999999999998876555443332
Q ss_pred cC-------------------ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHH-HHHcCChHHHHHhhCC
Q psy12605 366 AG-------------------LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE-VVAAGAVPLFLRLLMS 425 (845)
Q Consensus 366 ~~-------------------~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-l~~~g~i~~Lv~lL~~ 425 (845)
.+ +-..|+..+..+ .+..+......++..++...+-.+-. =.-...+..+-.++.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 21 233455555555 46778888999999999887754332 1112234556667778
Q ss_pred CCHHHHHHHHHHHHHhhcCC
Q psy12605 426 PHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~ 445 (845)
.+.+++..++.+++.+....
T Consensus 157 ~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCCcHHHHHHHHHHHHHcCC
Confidence 99999999999999887644
No 208
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.24 E-value=1.9 Score=48.56 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=111.4
Q ss_pred HHHHHHHHHcC----CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 46 LDMLVVEAARK----DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 46 i~~lv~~~l~~----~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
+.++|.+...+ +|+..|..|...|.++.+...+ ... .-+|.|+..+..+++|.+|..|...|+.++-.-.
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~-fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE-FCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH-HHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 33444355555 6899999999999998765432 222 2389999999888999999999999998764221
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
...+ ..-..|.+-|.+.+..++..|+.++.++.-.+ .+--.|-++.+..+|..+ +..+...|-..+..+
T Consensus 967 ~~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~de-da~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDE-DAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCC-cchHHHHHHHHHHHH
Confidence 1222 24567788888999999999999999986432 233347788888888877 557888888888888
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhc
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILI 225 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll 225 (845)
+..++. ...|.+..+..+.
T Consensus 1036 a~KdNt-----~yn~fidifs~ls 1054 (1128)
T COG5098 1036 AKKDNT-----MYNGFIDIFSTLS 1054 (1128)
T ss_pred Hhcccc-----hhhhhHHHHHHcC
Confidence 876532 2345555544443
No 209
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.12 E-value=13 Score=40.61 Aligned_cols=151 Identities=13% Similarity=0.238 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhc-C--ChhhHHHHhc-CCccchhhHhhcCC---chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHH
Q psy12605 301 TASLRAVGNIVT-G--TDEQTQVILN-CDALSHFPALLTHP---KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKII 373 (845)
Q Consensus 301 ~~al~~L~nl~~-~--~~~~~~~i~~-~~~l~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv 373 (845)
...++++..+.. + .+.....+++ ...+..|..++.+. .+.+-..|+.++..+..+.|.....+.+.|+++.++
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 344566666655 2 2223333455 44555666666554 367888899999999899999989999999999999
Q ss_pred HHhh-hcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCH-------HHHHHHHHHHHHhhcCC
Q psy12605 374 ANLQ-KVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS-------NVCEQAVWALGNIIGDG 445 (845)
Q Consensus 374 ~lL~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-------~v~~~a~~~L~nl~~~~ 445 (845)
+.+. ..-. .+.++-...-.++..||-+. ...+.+.+.+.++.+++++.+++. +.-...-.++-.+.++.
T Consensus 158 ~~i~~~~i~--~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 158 DAITAKGIL--PSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHhccCCC--CcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 9998 3311 35566666667777777654 567778889999999999988653 23333444555677888
Q ss_pred hHHHHHHHh
Q psy12605 446 PQLRDYVIN 454 (845)
Q Consensus 446 ~~~~~~l~~ 454 (845)
|..|..+.+
T Consensus 235 p~Lk~~i~~ 243 (379)
T PF06025_consen 235 PSLKPDIID 243 (379)
T ss_pred HHHHHHHHH
Confidence 887776544
No 210
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=89.67 E-value=26 Score=38.82 Aligned_cols=246 Identities=14% Similarity=0.142 Sum_probs=128.7
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
+..++...+..|+.+++|+|+.=|+....+|.++-+.-...|..++.. +...+.+++.....-.-...++.++..+..+
T Consensus 127 ~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 127 KKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp TTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 335556678899999999999999999999988876555666666543 3445566665443333445566666666666
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
-..+-......-....+..+.....-.. --..-..++......++..... +
T Consensus 206 f~~plk~eh~~fl~~vllPLh~~~~~~~------------------------y~~~L~~~~~~f~~kdp~l~~~-----~ 256 (409)
T PF01603_consen 206 FAVPLKEEHKQFLRKVLLPLHKSPHLSS------------------------YHQQLSYCVVQFLEKDPSLAEP-----V 256 (409)
T ss_dssp --SS--HHHHHHHHHTTGGGGGSTGGGG------------------------THHHHHHHHHHHHHH-GGGHHH-----H
T ss_pred cCCCCcHHHHHHHHHHHHHHhcCCcHHH------------------------HHHHHHHHHHHHHHhCchhHHH-----H
Confidence 5333333333333344444444332220 1111222222222222222222 2
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCCh-hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTD-EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+..++...-..+..=...-+.-+..+...-+ .....+. ......+..++++.+-.+.+.|+..+.| +.....+
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li 330 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM-VPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLI 330 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHH
Confidence 3344444434444444455566666654322 2112121 2356777788888888888888776655 2222222
Q ss_pred Hh--cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 364 ID--AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 364 ~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
.+ ..++|.++..+.......=+..++..|..++.-+..-+++.
T Consensus 331 ~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 331 SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKL 375 (409)
T ss_dssp HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHH
Confidence 11 23567777776543221125678888888888887766543
No 211
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=89.43 E-value=6.3 Score=42.18 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=120.2
Q ss_pred HHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhcc-CCHHHHHHHHHC-CC-hHHHHHHhhhhhhhhhhhcccCCchhH
Q psy12605 577 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDA-GL-LPKIIANLQKRSCKILNKYLDNNNMVL 653 (845)
Q Consensus 577 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~-~~~~~~~~~~~~-~~-l~~L~~ll~~~~~~~~~~~~~~~~~~~ 653 (845)
+.+++.. ++.+..-+.+.++.+...++..+..++. ......+.+... ++ ++.+.+++..+...
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~------------- 116 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKE------------- 116 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccccc-------------
Confidence 4444443 7788888888889999999999999998 666666666542 21 33444444211000
Q ss_pred HHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHH
Q psy12605 654 HNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAK 733 (845)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 733 (845)
.. ... ..-... +.+|......+..+...+++.-...
T Consensus 117 -------------------~~---~~~---------------------~~~~~~-~siR~~fI~F~Lsfl~~~~~~~~~~ 152 (330)
T PF11707_consen 117 -------------------KE---KDS---------------------ESSKSK-PSIRTNFIRFWLSFLSSGDPELKRD 152 (330)
T ss_pred -------------------cc---ccc---------------------cccccC-cCHHHHHHHHHHHHHccCCHHHHHH
Confidence 00 000 000112 4899999999888888889988888
Q ss_pred HH-HcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH----HHHHHHHHHH
Q psy12605 734 LV-QEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV----EIYKLAYDII 808 (845)
Q Consensus 734 l~-~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~----~v~~~a~~~l 808 (845)
++ +.+.+..+.+-|...+.+++...+.+|..-+-..+.-.....-.+.....+.+|..+...+++ .+.+.|.++|
T Consensus 153 lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL 232 (330)
T PF11707_consen 153 LLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFL 232 (330)
T ss_pred HHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHH
Confidence 77 556788888888888889999999999864433332112233344555577888888877777 8999999999
Q ss_pred HHhcCc
Q psy12605 809 ERYFSE 814 (845)
Q Consensus 809 ~~~~~~ 814 (845)
..+...
T Consensus 233 ~~lcT~ 238 (330)
T PF11707_consen 233 LALCTD 238 (330)
T ss_pred HHHhcC
Confidence 988753
No 212
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.29 E-value=34 Score=36.55 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=139.3
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh-----HHHHHh--cCchhh
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ-----IQMVID--SGVVPS 287 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~--~g~i~~ 287 (845)
.+.+..|+..+..-+-+ .+.+++....++.....+. ...+.+ ..++..
T Consensus 75 ~dll~~Li~~L~~L~fE-------------------------srKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~ 129 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFE-------------------------SRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDI 129 (335)
T ss_dssp HTHHHHHHHTGGGS-HH-------------------------HHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHH
T ss_pred hCHHHHHHHHhhhCCCc-------------------------ccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHH
Confidence 45666777666665555 6677777777766543222 222222 123333
Q ss_pred HHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC
Q psy12605 288 LIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG 367 (845)
Q Consensus 288 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~ 367 (845)
|+..- .++++...+-..|+.++.. +.....+.....+..+.+.+..++=++...|..++..+...........+..+
T Consensus 130 L~~gy--~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n 206 (335)
T PF08569_consen 130 LLRGY--ENPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN 206 (335)
T ss_dssp HHHGG--GSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT
T ss_pred HHHHh--cCccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33333 3566777777778877665 66667777777888888888889999999999999998777777666666543
Q ss_pred ---ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh---HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 368 ---LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 368 ---~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
++.....+|.+ .+.-+|+.+...|+.+....... .+++-+..-+..++.+|.+.+..++..|..++--+
T Consensus 207 ~d~ff~~~~~Ll~s-----~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 207 YDRFFQKYNKLLES-----SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHHHHHHCT------SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-----CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 56666777766 48999999999999998654432 45555566788899999999999999999998887
Q ss_pred hcC---ChHHHHHHHh
Q psy12605 442 IGD---GPQLRDYVIN 454 (845)
Q Consensus 442 ~~~---~~~~~~~l~~ 454 (845)
..+ ++...+.+..
T Consensus 282 VANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 282 VANPNKPPPIVDILIK 297 (335)
T ss_dssp HH-SS-BHHHHHHHHH
T ss_pred HhCCCCChHHHHHHHH
Confidence 764 3445555543
No 213
>KOG1243|consensus
Probab=89.01 E-value=15 Score=42.14 Aligned_cols=252 Identities=17% Similarity=0.147 Sum_probs=152.9
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCC-ChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD-RPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
.-+.-.+.+.+..-...|...+.. .-+.++...++|.|+..+...+ .+.+.... .-+...-.. ++ .+.
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl-~k~~k~ld~-~e-----yq~ 329 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLTPL-FKLGKDLDE-EE-----YQV 329 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhhHH-HHhhhhccc-cc-----ccc
Confidence 455566666666666666553332 2256667778888888885443 12222111 112222111 11 556
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
+.+|.|++++++++..+|-.-+.-+-+.... ..+.+++.-++|.+..-+... +..+|+.++.++..++..-...
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh--
Confidence 7999999999999999998877766666532 344556666788888777666 4589999888888877543221
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
......+..|.++-.++... ++....-||..++.+.... ..+.-.+.....
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~-------------------------irtntticlgki~~~l~~~---~R~~vL~~aftr 454 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGG-------------------------IRTNTTICLGKIAPHLAAS---VRKRVLASAFTR 454 (690)
T ss_pred -hhcHHHHHHHHhhCccccCc-------------------------ccccceeeecccccccchh---hhccccchhhhh
Confidence 12234555555544434444 5555555565555442211 112223344555
Q ss_pred hccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 291 LLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 291 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
.++++-..-+.+++..+......-+. .-+...++|.+.-+.-+++..+|..|..++...
T Consensus 455 alkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 455 ALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 67777777888888877765433221 223346888899888888888898887777654
No 214
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=88.66 E-value=53 Score=38.05 Aligned_cols=156 Identities=17% Similarity=0.092 Sum_probs=94.8
Q ss_pred hhhcHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-------CChhHHHHHHHH
Q psy12605 42 AQVNLDMLVVEAAR--KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-------DRPNLQFEAAWA 112 (845)
Q Consensus 42 ~~~~i~~lv~~~l~--~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~i~~~a~~~ 112 (845)
.+.+-.+++++..+ ++...--..|+..+....+..+. .. -.|+++-++..|..+ +++.-...|++.
T Consensus 365 fEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke---~T--fqgiLsf~~sil~qsaa~psn~dnarq~egalr~ 439 (970)
T COG5656 365 FENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKE---ET--FQGILSFLLSILGQSAATPSNIDNARQAEGALRL 439 (970)
T ss_pred HhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccch---hh--hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHH
Confidence 44455555544332 22222224455555544433221 21 257899999999433 233444566666
Q ss_pred HHHHhc--CChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHH
Q psy12605 113 LTNIAS--GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF 190 (845)
Q Consensus 113 L~~la~--~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~ 190 (845)
+.++.+ .-..-...+++.=.++.++..++++.--++.+|+..+..+..+- ++..+-..+.+...++++++ +..+
T Consensus 440 lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl~nn-~lpv 515 (970)
T COG5656 440 LASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCLKNN-HLPV 515 (970)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHhcC-Ccch
Confidence 666654 22333455777778899999999999999999999999996443 33332223445555666653 5567
Q ss_pred HHHHHHHHHHhhcCCC
Q psy12605 191 LRNVTWVIVNLCRNKD 206 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~ 206 (845)
+..|+-++.-+..+..
T Consensus 516 ~ieAalAlq~fi~~~q 531 (970)
T COG5656 516 MIEAALALQFFIFNEQ 531 (970)
T ss_pred hhhHHHHHHHHHhchh
Confidence 8888888888877763
No 215
>KOG4464|consensus
Probab=88.66 E-value=37 Score=36.29 Aligned_cols=270 Identities=17% Similarity=0.186 Sum_probs=146.7
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhh---cccCCchhhHHHHHHHhhhChhhHHhhhh
Q psy12605 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNIL---IHHHDTSVSIYLWLSIIEKNPQISKILVS 253 (845)
Q Consensus 177 ~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l---l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (845)
.++..|.++.+...+..+..++.-|+++.+..... ........|..+ -..++.. |. ..
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~-~~~q~~~~ll~~A~ls~~e~sl-------------~~-----v~ 109 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPL-TNDQLCQKLLALAELSSNENSL-------------PT-----VA 109 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccc-cchHHHHHHHHHHHhccccCCC-------------Cc-----cc
Confidence 35556666655567777888888888877544332 223333333333 2222111 00 00
Q ss_pred hHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-----CchhhHHHHHHHHHHHhcCChh-hHHHHhcCCcc
Q psy12605 254 KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-----KEVKVQTASLRAVGNIVTGTDE-QTQVILNCDAL 327 (845)
Q Consensus 254 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~~~-~~~~i~~~~~l 327 (845)
++++...++.||+++..++......+.+......+.+.+.. -...+...-++.|.-+..-... ..+.+.+.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 13488899999999999988877777788777777766622 1223455556666555543334 44556677899
Q ss_pred chhhHhhcCC---c------------hhhHHHHHHHHHHhhcCChHHHH--HHHh----cCChHHHHHHhhhcccccCCh
Q psy12605 328 SHFPALLTHP---K------------EKICKEAVWFLSNITAGNQAQVQ--AVID----AGLLPKIIANLQKVGRIVLRP 386 (845)
Q Consensus 328 ~~L~~lL~~~---~------------~~~~~~a~~~L~nl~~~~~~~~~--~l~~----~~~i~~Lv~lL~~~~~~~~~~ 386 (845)
+.+.+.+.++ + .+..-+++.++.|++.+...... .-+. ..+...++..+.... .+.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~---~~~ 266 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRD---STE 266 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccc---hHH
Confidence 9999988542 1 13345677788888765432211 1111 112222222221110 122
Q ss_pred hHHHHHHHHHHHH--------hc--CChHhHH--HHHHcCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhcCC
Q psy12605 387 NLQFEAAWALTNI--------AS--GTSAQTQ--EVVAAGAVPLFLRLLMS---------PHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 387 ~v~~~a~~~L~~l--------~~--~~~~~~~--~l~~~g~i~~Lv~lL~~---------~~~~v~~~a~~~L~nl~~~~ 445 (845)
++...+...+.|. +. ......+ ...+..-...+..+|.. +..+.....+.+|..++.++
T Consensus 267 elhshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~ 346 (532)
T KOG4464|consen 267 ELHSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSH 346 (532)
T ss_pred HHhhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhh
Confidence 2222222222221 11 1111222 22222334555555543 23356678899999999999
Q ss_pred hHHHHHHHhCCChHHHHhccCCCC
Q psy12605 446 PQLRDYVINMGVVPPLLSFIKPDI 469 (845)
Q Consensus 446 ~~~~~~l~~~g~l~~L~~ll~~~~ 469 (845)
...|..+.+. ++|+|...-+...
T Consensus 347 R~~Rkylr~q-VLPPLrDV~~RPE 369 (532)
T KOG4464|consen 347 RVMRKYLRQQ-VLPPLRDVSQRPE 369 (532)
T ss_pred HHHHHHHHHh-cCCchhhhhcCcc
Confidence 8888877655 8888887665443
No 216
>KOG2005|consensus
Probab=88.47 E-value=51 Score=37.62 Aligned_cols=155 Identities=18% Similarity=0.215 Sum_probs=91.6
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCc----cHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHH
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNP----PIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l 116 (845)
+...+++-+| +.++++|++.+..|+..++......... +...=.-..-.+.|.++.++-.+++.+...+.+|.-+
T Consensus 45 ~lk~dLellV-ervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 45 QLKGDLELLV-ERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVL 123 (878)
T ss_pred HhhhhHHHHH-HHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHH
Confidence 4566788888 9999999999999999999886654321 1100001222344555554334567888999999998
Q ss_pred hcCChhhHHHHH-------------HcCChHHHHHhhCC---------C-ChhHHHHHHHHHHHhcCCCh--hhHHHHHh
Q psy12605 117 ASGTSAQTQEVV-------------AAGAVPLFLRLLMS---------P-HSNVCEQAVWALGNIIGDGP--QLRDYVIN 171 (845)
Q Consensus 117 a~~~~~~~~~i~-------------~~g~i~~L~~lL~s---------~-~~~v~~~a~~~L~nla~~~~--~~r~~i~~ 171 (845)
|....+....+. .+..|..|..-+.. + ..++.+-+..++-..-.++. +..+.+++
T Consensus 124 amt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~E 203 (878)
T KOG2005|consen 124 AMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLME 203 (878)
T ss_pred heeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 865444433311 11123333332211 1 13445555555555555553 35677888
Q ss_pred cCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 172 MGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 172 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
-+.|+.++...... ..++.+.+..+
T Consensus 204 ve~id~l~~~Vd~~---n~~RvclYl~s 228 (878)
T KOG2005|consen 204 VEGIDLLLDYVDEH---NYQRVCLYLTS 228 (878)
T ss_pred hhhHhHHHHHhhhh---hHHHHHHHHHH
Confidence 89999999888765 34455544443
No 217
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.42 E-value=1.9 Score=47.33 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=77.1
Q ss_pred CccchhhHh-hcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPAL-LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
|++..++.. .++.++++|++|..+|+-+|..+++ .++..+++|... .++.||...+.+|+-.|.+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~s----hN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSES----HNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhc----cchhhhhhhHHHhhhhhcCC
Confidence 445555555 4678899999999999998877654 466777888766 58999999999999988766
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.... ++..|-.++.++++-||..|+-+++-|..
T Consensus 618 G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 618 GDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred ccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 4332 46677788889999999999999888764
No 218
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.08 E-value=1.3 Score=43.68 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHhcC-------CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH-HcC
Q psy12605 60 ELQLLAVQSARKLLSSDKNPPIEALIHSG-------ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV-AAG 131 (845)
Q Consensus 60 ~~~~~a~~~l~~ll~~~~~~~~~~i~~~g-------~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~-~~g 131 (845)
+-|..|+++|.+++-.+.| ++.++..+ ++..|+++|....++-.|..|...|.++|.+++.....+. +.+
T Consensus 139 SPqrlaLEaLcKLsV~e~N--VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENN--VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccC--cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4578899999999876644 45544433 5677788886667889999999999999998777776544 478
Q ss_pred ChHHHHHhhCCC
Q psy12605 132 AVPLFLRLLMSP 143 (845)
Q Consensus 132 ~i~~L~~lL~s~ 143 (845)
+|..|+.++++.
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999998765
No 219
>KOG2025|consensus
Probab=87.67 E-value=17 Score=41.60 Aligned_cols=106 Identities=24% Similarity=0.185 Sum_probs=76.5
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.|++..++.-. .+++..+|...+..|..+... .......+-.+....+..-+.+..+.+|.+|+.+|..+=++..+
T Consensus 84 ~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGT-ESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-- 159 (892)
T ss_pred HHHHHHHHhcc-cCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--
Confidence 45555555555 356778999999999999753 23344444457888888888888999999999999999743211
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
-+..+...+..+++++.+.++|+.|+..+.
T Consensus 160 ---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 ---EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 022357788889998888899997765443
No 220
>KOG1243|consensus
Probab=87.10 E-value=4.7 Score=45.90 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=124.1
Q ss_pred HHHcCCC-hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 52 EAARKDN-PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 52 ~~l~~~~-~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
..+.-.+ .+...-.+..+.+.+...+ ...+++|.|+++++ ..+..+|..-+.-+-+... -..+.+++.
T Consensus 300 ~~~~~g~a~~~~ltpl~k~~k~ld~~e-------yq~~i~p~l~kLF~-~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d 368 (690)
T KOG1243|consen 300 AALEFGDAASDFLTPLFKLGKDLDEEE-------YQVRIIPVLLKLFK-SPDRQIRLLLLQYIEKYID---HLTKQILND 368 (690)
T ss_pred HHhhccccchhhhhHHHHhhhhccccc-------cccchhhhHHHHhc-CcchHHHHHHHHhHHHHhh---hcCHHhhcc
Confidence 4444333 3444444555555444332 45678999999994 6677788665555544432 245677888
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
.++|.+...+.+.++.+|++++.++..|+.-- -........+..+-++ +.+.+-.+|.+.+-||..+.....+..
T Consensus 369 ~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL---~~~~Ln~Ellr~~ar~-q~d~~~~irtntticlgki~~~l~~~~- 443 (690)
T KOG1243|consen 369 QIFPHVALGFLDTNATLREQTLKSMAVLAPKL---SKRNLNGELLRYLARL-QPDEHGGIRTNTTICLGKIAPHLAASV- 443 (690)
T ss_pred hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh---chhhhcHHHHHHHHhh-CccccCcccccceeeecccccccchhh-
Confidence 89999999999999999999999999887431 1111221122222222 223344566666555555554432211
Q ss_pred hhHHhhH-HHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 211 MSTIIEL-LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 211 ~~~~~~~-l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
..+. ...+.+.++++-.. .+..+.+.+.......+. .. +...+++.++
T Consensus 444 ---R~~vL~~aftralkdpf~p-------------------------aR~a~v~~l~at~~~~~~--~~-va~kIlp~l~ 492 (690)
T KOG1243|consen 444 ---RKRVLASAFTRALKDPFVP-------------------------ARKAGVLALAATQEYFDQ--SE-VANKILPSLV 492 (690)
T ss_pred ---hccccchhhhhhhcCCCCC-------------------------chhhhhHHHhhcccccch--hh-hhhhcccccc
Confidence 1222 22233334444333 445555555543332221 12 2557888999
Q ss_pred hhccCCchhhHHHHHHHHHHHh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIV 311 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~ 311 (845)
.+..+++..++..|-.++....
T Consensus 493 pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 493 PLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccccCcccchhhHHHHHHHHHH
Confidence 9998888888888887777654
No 221
>KOG1820|consensus
Probab=87.01 E-value=7.7 Score=46.19 Aligned_cols=183 Identities=11% Similarity=0.100 Sum_probs=114.7
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhH
Q psy12605 134 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 134 ~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 213 (845)
+.+-.-+.+++..-+..|+..+..+..+.. ........|.+-.++.....+.+..+...++.+|..++...... ....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHH
Confidence 334444455666778888888887774432 11111122344455555666767788888999999988866332 3334
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
.....|.+..-+...... ++..+..++........ -....+.+..+++
T Consensus 334 ~~~v~p~lld~lkekk~~-------------------------l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSE-------------------------LRDALLKALDAILNSTP-------LSKMSEAILEALK 381 (815)
T ss_pred HHhhcchHHHHhhhccHH-------------------------HHHHHHHHHHHHHhccc-------HHHHHHHHHHHhc
Confidence 456666666666554444 44444444433322111 1234567788889
Q ss_pred CCchhhHHHHHHHHHHHhcCChh---hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDE---QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~---~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
+.++.++......+.......+. .+..+ .+.++.++....+.+.++|.+|..+++-+
T Consensus 382 ~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 382 GKNPQIKGECLLLLDRKLRKLGPKTVEKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred CCChhhHHHHHHHHHHHHhhcCCcCcchhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 99999999888887777655442 22222 25778888888999999999999988876
No 222
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.78 E-value=23 Score=34.29 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=77.6
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
+.++=++.++ +...+++.+.+..|+..+...+..+=-.+.+ .+|.||.+. .++++.++..|...+..+....
T Consensus 5 l~Qryl~~Il-~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 5 LVQRYLKNIL-ELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALE-TSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhh-CCCChHHHHHHHHHHHHHHHHh
Confidence 3455677888 7889999999999999999888765322333 599999998 6789999999999999998655
Q ss_pred hhhHHHHHHcCChHHHHHhh---CCC-ChhH---HHHHHHHHHHhcCCChhhHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLL---MSP-HSNV---CEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL---~s~-~~~v---~~~a~~~L~nla~~~~~~r~~i 169 (845)
+.....-... |+..-.++- ..+ .... ....+..|..+...+...|..+
T Consensus 77 ~s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F 131 (187)
T PF12830_consen 77 ESLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF 131 (187)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH
Confidence 4443332222 233332222 111 1111 4455555666665555566654
No 223
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.63 E-value=49 Score=35.41 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=111.5
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc-C-CHHHHHHhhccC---CC---------hhHHH
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-G-ILPVLVECLERS---DR---------PNLQF 107 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~-g-~i~~Lv~lL~~~---~~---------~~i~~ 107 (845)
.+..+..+. +.|++..+..+..+++-|..+++........++... + -.+.+-+++... .. +.+|.
T Consensus 54 L~~~~k~ly-r~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~ 132 (330)
T PF11707_consen 54 LQNHLKLLY-RSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRT 132 (330)
T ss_pred HHHHHHHHH-HHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHH
Confidence 333455555 788888888888999999999885544455665543 2 234555555321 11 27888
Q ss_pred HHHHHHHH-HhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHH-hcCCC---hhhHHHHHhcCChhhHHhh
Q psy12605 108 EAAWALTN-IASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGN-IIGDG---PQLRDYVINMGVVPPLLSF 181 (845)
Q Consensus 108 ~a~~~L~~-la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~n-la~~~---~~~r~~i~~~g~i~~Lv~l 181 (845)
.....+.. +..+++..+..+.+ .+.+..+.+-|..++.++....+.+|.. +..+. ...+-.+.....+..|..+
T Consensus 133 ~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~L 212 (330)
T PF11707_consen 133 NFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASL 212 (330)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHH
Confidence 77775554 55566777776665 6789999999999999999999999984 54443 2344555666677888886
Q ss_pred hcCCCC---HHHHHHHHHHHHHhhcCCC
Q psy12605 182 IKPDIP---ISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 182 l~~~~~---~~~~~~a~~~L~~l~~~~~ 206 (845)
.....+ ..+...+-..|..+|.+..
T Consensus 213 y~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 213 YSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred hcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 655432 3678888888888887553
No 224
>KOG2611|consensus
Probab=86.44 E-value=44 Score=36.52 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=116.0
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCC---hhhHHHHHhcCChhhHHhhhcC------CCCHHHHHHHHHHHHHhhcCCC
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDG---PQLRDYVINMGVVPPLLSFIKP------DIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~---~~~r~~i~~~g~i~~Lv~ll~~------~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
+..+++..+.+-+-+|+-....++... ..+|+.++++=+++.+-+++.. +.+.-.+..++.+|..+|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 556666666666777777777777554 2467778888778877777743 2234455667888999999774
Q ss_pred CCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 207 PPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
-. ....+-..+|.|...+.. .|++. +.| .-+..++..+|..++.+.... ..++..|.+
T Consensus 96 lA-sh~~~v~~IP~llev~~~~~d~d~---------e~~----------~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~ 154 (698)
T KOG2611|consen 96 LA-SHEEMVSRIPLLLEVMSKGIDTDY---------EDN----------LIMLEDCYECLYLVATAEAGL-MTLIASGGL 154 (698)
T ss_pred hc-cCHHHHHhhhHHHHHHHhcCCCch---------hhh----------HHHHHHHHHHHHHHhcCCchh-HHHHhcCch
Confidence 32 223456778888887764 23330 111 118889999999998886654 445588999
Q ss_pred hhHHhhccCCchh-hHHHHHHHHHHHhcCChhhH---HHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC
Q psy12605 286 PSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQT---QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG 355 (845)
Q Consensus 286 ~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~---~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 355 (845)
+.+.++-.-++-. -..-|+..+.-...+-+-.. ..+. ..+..+..=+...+...+-+.|..|..+...
T Consensus 155 ~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 155 RVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVLHNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 9988766433322 22233333333332211111 1111 1122233333344667788888888865443
No 225
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.41 E-value=12 Score=36.36 Aligned_cols=101 Identities=9% Similarity=0.113 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc-----CCchhhHHHHHHHHHHhhcCCh-HHHHHHHhcCChHH
Q psy12605 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT-----HPKEKICKEAVWFLSNITAGNQ-AQVQAVIDAGLLPK 371 (845)
Q Consensus 298 ~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~-----~~~~~~~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~ 371 (845)
.-...|+..|.-++++ ++.+..+.++.+--.+...|. ++-+-+|-.++++++.+..++. ..++.+...+++|.
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 3455677777777665 566777777765444555552 2346789999999999887654 56677788999999
Q ss_pred HHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 372 IIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 372 Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
+++.+..+ +.-.+.-|+.++..+..++.
T Consensus 194 cLrIme~g-----SElSktvaifI~qkil~dDv 221 (315)
T COG5209 194 CLRIMELG-----SELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHHHhh-----hHHHHHHHHHHHHHHhccch
Confidence 99999885 56677788888888776553
No 226
>KOG2032|consensus
Probab=86.16 E-value=59 Score=35.85 Aligned_cols=116 Identities=22% Similarity=0.171 Sum_probs=75.5
Q ss_pred cCCccchhhHhh----cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 323 NCDALSHFPALL----THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 323 ~~~~l~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
+.|.+..++..+ .+++..+|.-|+..|.|.+.+.++.+.... .-.+..++.-|.+. .+.+|+.++..+|..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~----~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDD----LNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcC----CccHHHHHHHHHHHH
Confidence 345555555544 556788999999999999888555433322 23456666666665 478999999999888
Q ss_pred HhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 399 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 399 l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+...-....-...-..+.-.+-.+..+.++++|.++...++.++.
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 764221111111111223336677889999999999998888874
No 227
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.12 E-value=2.8 Score=35.14 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=61.5
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+...+ ..++++.+.+|-.++..|++++.... ....-..+++..+...| .++++-+-..|...|..++...++
T Consensus 4 ~~~~al-~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L-~d~DsyVYL~aI~~L~~La~~~p~-- 76 (92)
T PF10363_consen 4 TLQEAL-SDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQL-KDEDSYVYLNAIKGLAALADRHPD-- 76 (92)
T ss_pred HHHHHH-HHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHChH--
Confidence 355667 78899999999999999999998664 11122346788888888 467788999999999999975443
Q ss_pred HHHHHcCChHHHHHhhC
Q psy12605 125 QEVVAAGAVPLFLRLLM 141 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~ 141 (845)
.+++.|++...
T Consensus 77 ------~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ------EVLPILLDEYA 87 (92)
T ss_pred ------HHHHHHHHHHh
Confidence 24555555443
No 228
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.06 E-value=2.1 Score=41.55 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=60.3
Q ss_pred ChhhHHHHHhcCchhhHHhhccC---------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhH
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSH---------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKIC 342 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~---------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~ 342 (845)
+..-++.|++.|++..|+..|.. .+......+++||..+..........+...+++..|...|.+++..+|
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r 175 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTR 175 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHH
Confidence 33456677788999999888832 344688899999999976544444444456899999999999999999
Q ss_pred HHHHHHHHHhh
Q psy12605 343 KEAVWFLSNIT 353 (845)
Q Consensus 343 ~~a~~~L~nl~ 353 (845)
..++..|..+|
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998775
No 229
>KOG4464|consensus
Probab=85.97 E-value=53 Score=35.20 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=62.7
Q ss_pred chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH-HHHHHcCCh
Q psy12605 338 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT-QEVVAAGAV 416 (845)
Q Consensus 338 ~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~g~i 416 (845)
+..+..++..||+|+..+++...+...+......+.+.+..........+++..-...|.-+..-....+ +.+.+.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 4578899999999999999999888888888888877776543211233455555555555554444444 455677999
Q ss_pred HHHHHhhCC
Q psy12605 417 PLFLRLLMS 425 (845)
Q Consensus 417 ~~Lv~lL~~ 425 (845)
+.+-+++++
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999999875
No 230
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=85.55 E-value=6 Score=38.36 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=64.9
Q ss_pred ChHHHHHhhCC------CChhHHHHHHHHHHHhcCCChhhHHHHHhc--CC--hhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 132 AVPLFLRLLMS------PHSNVCEQAVWALGNIIGDGPQLRDYVINM--GV--VPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 132 ~i~~L~~lL~s------~~~~v~~~a~~~L~nla~~~~~~r~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
.+..|+.++.. ...+-....+.++.|++. .++.|+.+.+. +. +..|+.+..+. +.--|.-++++|.|+
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHh
Confidence 56777777655 234557789999999995 47899999855 34 67778887777 545666789999999
Q ss_pred hcCCCCCCChhHH--hhHHHHHHhhcc
Q psy12605 202 CRNKDPPPSMSTI--IELLPALNILIH 226 (845)
Q Consensus 202 ~~~~~~~~~~~~~--~~~l~~L~~ll~ 226 (845)
|-..+........ ..++|.|.--+.
T Consensus 131 cFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 131 CFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9887544333222 366666655544
No 231
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.35 E-value=17 Score=42.37 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred CchhhHHhhc----cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc---CCchhhHHHHHHHHHHhhcC
Q psy12605 283 GVVPSLIPLL----SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT---HPKEKICKEAVWFLSNITAG 355 (845)
Q Consensus 283 g~i~~Lv~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~---~~~~~~~~~a~~~L~nl~~~ 355 (845)
.+++.+...| ...+..-+...+++|||+-... .++.+...+. ..+..+|..|+++|..++..
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3455555555 2345566788899999984321 2233444443 23568999999999988654
Q ss_pred ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 356 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
.+.. +-+.++.++.+.. .++++|..|..+|...
T Consensus 511 ~p~~--------v~~~l~~i~~n~~---e~~EvRiaA~~~lm~t 543 (574)
T smart00638 511 DPRK--------VQEVLLPIYLNRA---EPPEVRMAAVLVLMET 543 (574)
T ss_pred CchH--------HHHHHHHHHcCCC---CChHHHHHHHHHHHhc
Confidence 4443 3456677776654 5788998888776653
No 232
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.31 E-value=4.8 Score=38.95 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=91.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC-hHhHHHHHHcCChHHHHHh
Q psy12605 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT-SAQTQEVVAAGAVPLFLRL 422 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~i~~Lv~l 422 (845)
.|+..|..+ ++.++.+..++++.+---+..+|...+.+..-.-++..+.+.++.+..++ ++..+.+.....+|..++.
T Consensus 119 naL~lLQcl-aShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCL-ASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHH-hcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 344444444 55566666677776655566666554333234568888999999999855 4566777788999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 423 LMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 423 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
++.+++--+.-++..+..+..+.....-..... .++..++.-+-+..+..+.+++..+.-.+|.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 999999888899999999988765443322211 1233333333344445566666666555553
No 233
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=84.91 E-value=6.7 Score=38.04 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHH---------------HhcCchhhHHhhccC------CchhhHHHHHHHHHHHhcCCh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMV---------------IDSGVVPSLIPLLSH------KEVKVQTASLRAVGNIVTGTD 315 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~---------------~~~g~i~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~ 315 (845)
....++..|+|++..+......+ .+...+..|+.++.. ....-.......+.|+++. +
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~-~ 89 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL-P 89 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-H
Confidence 44556777777776544322111 122356667777643 2344566778899999766 5
Q ss_pred hhHHHHhcC--Cc--cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh---cCChHHHHHHhh
Q psy12605 316 EQTQVILNC--DA--LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID---AGLLPKIIANLQ 377 (845)
Q Consensus 316 ~~~~~i~~~--~~--l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~Lv~lL~ 377 (845)
..|+.+.+. +. +..|+.++.+.+..-|..++.++.|+|...... ..+.. .+++|.|+--|.
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 667777755 23 667777778887777788899999998876665 55544 356666655554
No 234
>KOG2137|consensus
Probab=84.70 E-value=9.3 Score=43.83 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCC
Q psy12605 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 208 (845)
...++|.|..-+++.+..+|+.++..+...+..-+ -..+..-++|.+-.+.-..+...++.+++.|+..+.+.-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--- 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--- 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence 34578888888899999999999999999884322 223444567888877666667889999999999888422
Q ss_pred CChhHHhhHHHHHHhhcccCCch
Q psy12605 209 PSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
+....-..+..+.+-.+..++.
T Consensus 461 -D~~~v~d~~lpi~~~~~~~dp~ 482 (700)
T KOG2137|consen 461 -DKAAVLDELLPILKCIKTRDPA 482 (700)
T ss_pred -HHHHhHHHHHHHHHHhcCCCcH
Confidence 1122333444444555556666
No 235
>KOG2032|consensus
Probab=84.60 E-value=48 Score=36.49 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHH
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPA 220 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 220 (845)
.+++..++.-|+++|+|.+...|+-...-.. -.+..++.-|-++.+.++.-.++.+|..+........-....-++.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 4567789999999999999875543222211 134455555555555788888998888877654332222222334444
Q ss_pred HHhhcccCCch
Q psy12605 221 LNILIHHHDTS 231 (845)
Q Consensus 221 L~~ll~~~~~~ 231 (845)
+..+..+++++
T Consensus 347 lR~l~~se~~~ 357 (533)
T KOG2032|consen 347 LRTLFDSEDDK 357 (533)
T ss_pred HHHHHHhcChh
Confidence 55667777777
No 236
>KOG2999|consensus
Probab=84.54 E-value=12 Score=41.50 Aligned_cols=155 Identities=10% Similarity=0.184 Sum_probs=110.0
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc----hhhHHHHHHHHHHhhcCChHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK----EKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
...+.+.+.+++...+..|+..+..++.+ ......++...++..|.+++.+++ .++...++.+++.+..+..-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 35667777788877787899999988765 566788999999999999997754 3555666666666543322110
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
+ .+...++.....+..... .+..+-..|...|.++..++......+.+.--+..|+..++..+..+...|+..+-.
T Consensus 164 ~-~~~~~fV~~~a~~V~~~~---~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 164 E-SVSNDFVVSMASYVNAKR---EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred e-ecccHHHHHHHHHHhhhh---hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 0 112234444444443221 355677788889999998888888888888899999999999999999888777776
Q ss_pred hhcC
Q psy12605 441 IIGD 444 (845)
Q Consensus 441 l~~~ 444 (845)
+...
T Consensus 240 l~~~ 243 (713)
T KOG2999|consen 240 LFRK 243 (713)
T ss_pred HHhh
Confidence 6543
No 237
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=84.45 E-value=52 Score=33.76 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=47.3
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
...+..++.+|..+.+.++..++..|..+...-+..+. .....+.++.+++.++. -.+|+.+|-++
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~ 252 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHH
Confidence 34567789999888899999999999999876544322 44457888888887543 34555555544
No 238
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=83.95 E-value=8.4 Score=36.92 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcC-------------------chhhHHhhcc-CCchhhHHHHHHHHHHHhcCChh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSG-------------------VVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g-------------------~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++..|+.++..|-++.........+.. +-..|+..|. ..+..+....++++..++...+.
T Consensus 56 vR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY 135 (182)
T PF13251_consen 56 VRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY 135 (182)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh
Confidence 777888888877666544333322111 1233444553 44677888999999999987765
Q ss_pred hHHHHhcCCccc----hhhHhhcCCchhhHHHHHHHHHHhhcCC
Q psy12605 317 QTQVILNCDALS----HFPALLTHPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 317 ~~~~i~~~~~l~----~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
.+- +.|.++ .+..++.+.|.+++..++.++..+....
T Consensus 136 ~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 136 HRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred hhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 432 234444 4445567889999999999998875543
No 239
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.54 E-value=31 Score=39.43 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=105.0
Q ss_pred HHHcCCChHHHHHHHHHHHH--HHcCCCCccHHHHHhcCCHHHHHHhhccC---CChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 52 EAARKDNPELQLLAVQSARK--LLSSDKNPPIEALIHSGILPVLVECLERS---DRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~--ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
.++.+..++....|...++. ++..+ + -+-+..-|...+....+ +++.++..|..+|..+-+-+.+...
T Consensus 860 ~~IggtsEddf~da~~fikE~ElLyGe-k-----svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~- 932 (1128)
T COG5098 860 SRIGGTSEDDFVDAFFFIKEKELLYGE-K-----SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS- 932 (1128)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHhhch-h-----HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 56677777777777666653 23222 1 12233455555555322 6889999999999988765444332
Q ss_pred HHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 127 VVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 127 i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.-.|.|+..+. +|+|.+|.+|+-.||.+.---....+. .-..|.+-|... +..+++.+..++..+....
T Consensus 933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc
Confidence 36889999887 899999999999998775321111111 123444445444 5589999999999987654
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
. ....|-++.++.++.++|..
T Consensus 1003 q-----~KVKGqlg~ma~~L~deda~ 1023 (1128)
T COG5098 1003 Q-----LKVKGQLGKMALLLTDEDAE 1023 (1128)
T ss_pred c-----eeeccchhhhHhhccCCcch
Confidence 2 23568889999999999988
No 240
>PRK09169 hypothetical protein; Validated
Probab=82.61 E-value=1.8e+02 Score=38.73 Aligned_cols=109 Identities=22% Similarity=0.146 Sum_probs=50.3
Q ss_pred CHHHHHHhhc-cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhh-CCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 89 ILPVLVECLE-RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL-MSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 89 ~i~~Lv~lL~-~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL-~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
-+..++.-|+ ..++ .....++..|......++.....+-.. .+..++.-| +-++......+...|..-..+.+..+
T Consensus 164 ~v~~lLNalSKWP~~-~~c~~aa~~lA~~la~~~~l~~al~~q-~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~ 241 (2316)
T PRK09169 164 SFALLLNALSKWPDN-TDCQTAAEQLADRLASDSRLLQAMDAQ-EVANALNALSKWPDSPRCRNAAERLAERLADEPGLL 241 (2316)
T ss_pred HHHHHHHHhccCCCc-hHHHHHHHHHHHHhccCHHHHHhcchH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH
Confidence 3555555552 2333 344555566665555556666554433 333444444 34555556666666655544444443
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHH
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 200 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 200 (845)
..+-.. .+..+++.+++=......+.++..|..
T Consensus 242 ~~l~~q-~va~~LNAlSKWp~~~~c~~aa~~lA~ 274 (2316)
T PRK09169 242 QSLRAQ-EVALLLNALSKWPDDEACRQAAEALAA 274 (2316)
T ss_pred HhcCHH-HHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 322211 233444444432222333444444433
No 241
>KOG2025|consensus
Probab=82.09 E-value=57 Score=37.61 Aligned_cols=129 Identities=13% Similarity=0.093 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
+..-++..+.++-..+.+. -+ -++.+..++....+++..|+-..+..|.-+.-.....-..+. .+....+..-+.+
T Consensus 62 Il~fla~fv~sl~q~d~e~--Dl-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEE--DL-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHhhhccCchh--hH-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhc
Confidence 4444555555555444331 12 346677777777888999999999999988753322212222 2445556666677
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
..+.+|.+|+.+|+.+-....+. +..+...+..++++. .+++||+.|...+..
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnD----pS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQND----PSDEVRRAALSNISV 190 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcC----CcHHHHHHHHHhhcc
Confidence 88999999999999984222111 234667778888876 589999988765544
No 242
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.05 E-value=29 Score=38.42 Aligned_cols=257 Identities=14% Similarity=0.088 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC-C
Q psy12605 65 AVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-P 143 (845)
Q Consensus 65 a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s-~ 143 (845)
....|.+++...........+....+..|+.++ .+.+++.|.....+|..+-......+..+.. .....+.+.+.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~-~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELF-DSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 344444554443222222345556788999999 5788999999999999987654555555543 355566666654 3
Q ss_pred ChhHHHHHHHHHHHhcCCCh-hhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHH
Q psy12605 144 HSNVCEQAVWALGNIIGDGP-QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 222 (845)
Q Consensus 144 ~~~v~~~a~~~L~nla~~~~-~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 222 (845)
...-...++..++.+...-. ..++....- ....++.+...+.-......-..++..++..+. ......+..++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-----~l~~~~i~~ll 261 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-----SLAEPVIKGLL 261 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-----GGHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-----hhHHHHHHHHH
Confidence 45567778888998875421 122211100 122344444444332344455555555554331 11122222222
Q ss_pred hhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhccCCchhhHH
Q psy12605 223 ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLLSHKEVKVQT 301 (845)
Q Consensus 223 ~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~ 301 (845)
+.-=..++. . ....+.-+..+... +++....+ ...++..+...+.+++..|.+
T Consensus 262 k~WP~t~s~---------------K----------ev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAE 315 (409)
T PF01603_consen 262 KHWPKTNSQ---------------K----------EVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAE 315 (409)
T ss_dssp HHS-SS-HH---------------H----------HHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHH
T ss_pred HhCCCCCch---------------h----------HHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHH
Confidence 222122222 1 11111222222221 12222222 334567777788899999999
Q ss_pred HHHHHHHHHhcCChhhHHHHhcC--CccchhhHhhcC-----CchhhHHHHHHHHHHhhcCChHHH
Q psy12605 302 ASLRAVGNIVTGTDEQTQVILNC--DALSHFPALLTH-----PKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 302 ~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
.|+..+.|= .....+.+. .++|.+...+.. =+..++..|..++.-+..-+++..
T Consensus 316 rAl~~w~n~-----~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 316 RALYFWNNE-----YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp HHHGGGGSH-----HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHCCH-----HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 998776643 222222222 255666666633 257889888888888766555543
No 243
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=81.81 E-value=61 Score=34.20 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=93.9
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcC-----------CccchhhHhhc------CCchhhHHHHHHHHHHhhcCChH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNC-----------DALSHFPALLT------HPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~-----------~~l~~L~~lL~------~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
.-++|.+|+.|+.....++++.+..+++. .....|...|- +.|+---.-|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56799999999999999998887766643 11223455443 22333345688889999888888
Q ss_pred HHHHHHhc--C----------ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC-ChHHHHHhhCC
Q psy12605 359 QVQAVIDA--G----------LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG-AVPLFLRLLMS 425 (845)
Q Consensus 359 ~~~~l~~~--~----------~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g-~i~~Lv~lL~~ 425 (845)
.++.+.+- + .+..+..+|...-....++.++..-...|+-...+++.....+...+ .++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 87766332 1 35566666655221115788888889999999999999999888875 68889987542
Q ss_pred ---CCHHHHHHHHHHHHHhh
Q psy12605 426 ---PHSNVCEQAVWALGNII 442 (845)
Q Consensus 426 ---~~~~v~~~a~~~L~nl~ 442 (845)
.+.-|+.-++..||-.-
T Consensus 211 ~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHH
Confidence 34456666666665543
No 244
>KOG2999|consensus
Probab=81.39 E-value=47 Score=37.00 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=104.7
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCC---HHHHHHHHHHHHHhhcCCCCCC
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP---ISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
...+...+.+++..-+..++..|..++.+ +.+...++...++..|..++.+... .++....+.+++.+-...- .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv--v 161 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV--V 161 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce--e
Confidence 34456778888877777799999999965 5677778888889999999876643 3444444555555444331 1
Q ss_pred ChhH-HhhHHHHHHhhc--ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchh
Q psy12605 210 SMST-IIELLPALNILI--HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286 (845)
Q Consensus 210 ~~~~-~~~~l~~L~~ll--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 286 (845)
.+.. ....+.....+. +..+.. +...|+..|-.+.-.+......+.+.--++
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~-------------------------~~~~AL~~LE~~vl~s~~~~~~v~eev~i~ 216 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDAN-------------------------TLLAALQMLESLVLGSDTLRQLVAEEVPIE 216 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhccc-------------------------chHHHHHHHHHHHhCChHHHHHHHhcCcHH
Confidence 1100 011111111111 112222 556677777777766666667777888899
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHHhc
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVILN 323 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i~~ 323 (845)
.|+..+...+..++..|+..+..+.... +..+..+.+
T Consensus 217 ~li~hlq~~n~~i~~~aial~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 217 TLIRHLQVSNQRIQTCAIALLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 9999999999999999999998887543 334444443
No 245
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.21 E-value=13 Score=35.10 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=71.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc--CCHHHHHHhhccCCChhHHHHHHHHHHHHhc---CChh
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS--GILPVLVECLERSDRPNLQFEAAWALTNIAS---GTSA 122 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~---~~~~ 122 (845)
.+. ++++++++..+..++.-++..+..+. .+.+.+. ..+..|++.|+..+.+.+...+..+|..+.. +.++
T Consensus 29 ri~-~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 29 RIN-SLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHH-HHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344 78899999999999999998887542 3444433 3688899999777777888888888887763 4444
Q ss_pred hHHHHHH---cCChHHHHHhhCCCChhHHHHHHHHHHHhcC
Q psy12605 123 QTQEVVA---AGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 160 (845)
Q Consensus 123 ~~~~i~~---~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~ 160 (845)
..+.+.. .+.++.++++++. ....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 4444433 2344555555554 4556666666666654
No 246
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=80.36 E-value=19 Score=42.51 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred CchhhHHhhcc----CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC---chhhHHHHHHHHHHhhcC
Q psy12605 283 GVVPSLIPLLS----HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP---KEKICKEAVWFLSNITAG 355 (845)
Q Consensus 283 g~i~~Lv~lL~----~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~nl~~~ 355 (845)
.+++.+...+. ..+..-+..++++|||+-.. ..++.+...+... ...+|..|+++|..++..
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 34455555553 45667888999999999422 2455566666444 678999999999998766
Q ss_pred ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 356 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
.+.. +.+.++.++.+.. .++++|..|..+|..
T Consensus 555 ~~~~--------v~~~l~~I~~n~~---e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 CPEK--------VREILLPIFMNTT---EDPEVRIAAYLILMR 586 (618)
T ss_dssp -HHH--------HHHHHHHHHH-TT---S-HHHHHHHHHHHHH
T ss_pred CcHH--------HHHHHHHHhcCCC---CChhHHHHHHHHHHh
Confidence 6644 3456677777754 578888888766655
No 247
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=80.11 E-value=5.6 Score=33.34 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
++..++..|..+....+ ....-..+++..+...|+++++.|-.+|+++|..++...+. .+++.|++...+
T Consensus 19 vRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--------~vl~~L~~~y~~ 88 (92)
T PF10363_consen 19 VRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--------EVLPILLDEYAD 88 (92)
T ss_pred hHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--------HHHHHHHHHHhC
Confidence 88999999999887665 12222346777888899999999999999999999865433 244555555443
No 248
>KOG1566|consensus
Probab=78.62 E-value=80 Score=32.79 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=108.8
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH----HHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR----DYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIV 199 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r----~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~ 199 (845)
..+.++|....|++.+..-+-+-+.-++.+..++-.-....| +.+... .+.+-.++.... ..++...+...|.
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~--~e~~~~lv~~~~~~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETN--PEILDNLVKGYENTPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhC--HHHHHHHHhhhccchHHHHHHHHHHH
Confidence 345667899999999988877778777777777643222111 111111 111122222111 1233333333333
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
...+.. ...+......-+..+......+ +.++..+|..+...+.......+..+
T Consensus 151 Ecirhe-~LakiiL~s~~~~~FF~~vq~p-------------------------~FdiasdA~~tfK~llt~Hk~~vaEf 204 (342)
T KOG1566|consen 151 ECIRHE-FLAKIILESTNFEKFFLYVQLP-------------------------NFDIASDAFSTFKELLTRHKSVVAEF 204 (342)
T ss_pred HHHhhH-HHHHHHHcchhHHHHHHHHhcc-------------------------chHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 332222 0000111111111111111111 12366777777766543323222222
Q ss_pred HhcCc----hhhHHhhccCCchhhHHHHHHHHHHHhcCChh---hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 280 IDSGV----VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE---QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 280 ~~~g~----i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
..... .+.--.++.+++--++..++.++|.+..+.+. -.+.+.+...+..++.+|.++...++-+|.....-.
T Consensus 205 l~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvf 284 (342)
T KOG1566|consen 205 LIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVF 284 (342)
T ss_pred HHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHH
Confidence 23322 33355667888888999999999999865432 234444456788999999999999999998877766
Q ss_pred hcC
Q psy12605 353 TAG 355 (845)
Q Consensus 353 ~~~ 355 (845)
.+.
T Consensus 285 vAn 287 (342)
T KOG1566|consen 285 VAN 287 (342)
T ss_pred hcC
Confidence 554
No 249
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.54 E-value=28 Score=31.50 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=61.4
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHH-HHHHHHHHHHHhhcCCCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPIS-FLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~-~~~~a~~~L~~l~~~~~~~~ 209 (845)
++..|.+-|+++++.++..|+..|-.+...+ +.+...+...+.+..|..++....... ++..+...+......-...+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~ 117 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDP 117 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 5667778888999999999999999998774 557777778888999999887765544 88888888887766443333
Q ss_pred Ch
Q psy12605 210 SM 211 (845)
Q Consensus 210 ~~ 211 (845)
.+
T Consensus 118 ~~ 119 (133)
T smart00288 118 DL 119 (133)
T ss_pred Cc
Confidence 33
No 250
>KOG2611|consensus
Probab=77.76 E-value=1.2e+02 Score=33.47 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=93.5
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCC--ccHHHHHhcCCHHHHHHhhccCC----Ch--hHHHHHHHHHHHHhcCChhh
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKN--PPIEALIHSGILPVLVECLERSD----RP--NLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~----~~--~i~~~a~~~L~~la~~~~~~ 123 (845)
.+......+.++.|+--..+++.+..- ..+..+.++=+.+-+-.+|.+.+ -| -.+.-+..+|+.+|+. +|.
T Consensus 18 ~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-pEl 96 (698)
T KOG2611|consen 18 KLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-PEL 96 (698)
T ss_pred HHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-hhh
Confidence 566777788899999999998876532 12345677778888888885432 12 2556677788888875 565
Q ss_pred H--HHHHHcCChHHHHHhhCCC-Chh------HHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc
Q psy12605 124 T--QEVVAAGAVPLFLRLLMSP-HSN------VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 183 (845)
Q Consensus 124 ~--~~i~~~g~i~~L~~lL~s~-~~~------v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~ 183 (845)
. ..+++ .||.|+..++.. +++ +.+.+..+|..++.. +.....++..|+++.+.++-.
T Consensus 97 Ash~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 97 ASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred ccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHh
Confidence 4 34554 899999999764 333 788899999999977 667888889999999886653
No 251
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=77.16 E-value=92 Score=32.00 Aligned_cols=222 Identities=15% Similarity=0.189 Sum_probs=119.8
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 134 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVNLCRNKDPPPSMS 212 (845)
Q Consensus 134 ~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 212 (845)
..|-..|.++++.+|..|+.+|..+...-+.. .....-+..|+++..+.. +......++..+..|.+.......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~-- 76 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE-- 76 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh--
Confidence 34567788899999999999999887554421 122222455555543211 223444446666666654421111
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL 292 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 292 (845)
.....+..+ ..+-+.+. .+ ...+..+...+..+.....+....+ ..+.+..+++.+
T Consensus 77 ~~~~i~~~l---~~~~~~q~-----------~~---------q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~ 132 (262)
T PF14500_consen 77 SAVKILRSL---FQNVDVQS-----------LP---------QSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLI 132 (262)
T ss_pred hHHHHHHHH---HHhCChhh-----------hh---------HHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHh
Confidence 122222222 22222220 00 0156667777777665544333322 346677778887
Q ss_pred c-CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh--------cC-C-ch--hhHHHHHHHHHHhhcCChHH
Q psy12605 293 S-HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL--------TH-P-KE--KICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 293 ~-~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL--------~~-~-~~--~~~~~a~~~L~nl~~~~~~~ 359 (845)
+ ..+|.-...+.+.+..+...-+. ....+.+.+.+ .. + ++ -.++.-...|.+....++..
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f 205 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF 205 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh
Confidence 4 46788888888888877654321 12222333332 11 1 11 12333334455543443332
Q ss_pred HHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 360 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
..-.+|.|++-|.+. .+.+|..+..+|...+.
T Consensus 206 -----a~~~~p~LleKL~s~-----~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 206 -----APFAFPLLLEKLDST-----SPSVKLDSLQTLKACIE 237 (262)
T ss_pred -----HHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHHHH
Confidence 344678899988874 67799999998888664
No 252
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=77.08 E-value=18 Score=42.82 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=71.9
Q ss_pred HHHHHHhhccC---CChhHHHHHHHHHHHHhcCChhh---------HHHHHHcCChHHHHHhhC----CCChhHHHHHHH
Q psy12605 90 LPVLVECLERS---DRPNLQFEAAWALTNIASGTSAQ---------TQEVVAAGAVPLFLRLLM----SPHSNVCEQAVW 153 (845)
Q Consensus 90 i~~Lv~lL~~~---~~~~i~~~a~~~L~~la~~~~~~---------~~~i~~~g~i~~L~~lL~----s~~~~v~~~a~~ 153 (845)
+..+..+++.. +++.++..|..+++.+....... .........++.|.+.|. ..+.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 45555566321 45667777777777766321111 111222356777777776 346677889999
Q ss_pred HHHHhcCCChhhHHHHHhcCChhhHHhhhcCC--CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC--C
Q psy12605 154 ALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD--IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH--D 229 (845)
Q Consensus 154 ~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~ 229 (845)
+|||+... ..++.+..++... .+..+|..|+++|..+.... ...+.+.+..++.+. +
T Consensus 513 aLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~--------~~~v~~~l~~I~~n~~e~ 573 (618)
T PF01347_consen 513 ALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC--------PEKVREILLPIFMNTTED 573 (618)
T ss_dssp HHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT---------HHHHHHHHHHHHH-TTS-
T ss_pred HhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC--------cHHHHHHHHHHhcCCCCC
Confidence 99999632 1366667666544 46688999999999875543 345666777776653 4
Q ss_pred ch
Q psy12605 230 TS 231 (845)
Q Consensus 230 ~~ 231 (845)
++
T Consensus 574 ~E 575 (618)
T PF01347_consen 574 PE 575 (618)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 253
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=76.23 E-value=16 Score=34.43 Aligned_cols=138 Identities=11% Similarity=0.094 Sum_probs=76.4
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
.+++.|+++++.+ .++.+|.++..+++.|-.=++...+.+....--. .-...+......... ..+....+
T Consensus 10 ~LL~~L~~iLk~e----~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~----~~~~~~~~~~~~~l~-~~~~~~~~- 79 (160)
T PF11865_consen 10 ELLDILLNILKTE----QSQSIRREALRVLGILGALDPYKHKSIQKSLDSK----SSENSNDESTDISLP-MMGISPSS- 79 (160)
T ss_pred HHHHHHHHHHHhC----CCHHHHHHHHHHhhhccccCcHHHhcccccCCcc----ccccccccchhhHHh-hccCCCch-
Confidence 4677888888887 5799999999999999766654443222111000 000000111111110 00111111
Q ss_pred HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH
Q psy12605 447 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518 (845)
Q Consensus 447 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~ 518 (845)
+...-..++..|++.|++.+-......++.++.+++..... .....+..++|.+...++..++.....
T Consensus 80 ---ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~-~cv~~L~~viP~~l~~i~~~~~~~~e~ 147 (160)
T PF11865_consen 80 ---EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL-KCVPYLPQVIPIFLRVIRTCPDSLREF 147 (160)
T ss_pred ---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc-CchhHHHHHhHHHHHHHHhCCHHHHHH
Confidence 12233345677777777655555555677777777755432 236777889999988888666555443
No 254
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=75.88 E-value=32 Score=31.13 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=62.9
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHhccCCCCChh-HHHHHHHHHHHhhcCCCCCC
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPIS-FLRNVTWVIVNLCRNKDPPP 492 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~-~~~~~~~~l~nL~~~~~~~~ 492 (845)
++..|-+-|.++++.++..|+..|..+..+ +..+...+...+.+..|..++......+ ++..+..++..-.......+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~ 117 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDP 117 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 455677788899999999999999999987 4667788888889999999998766544 77777777776666554344
Q ss_pred ChhHHH
Q psy12605 493 SMSTII 498 (845)
Q Consensus 493 ~~~~~~ 498 (845)
.+..+.
T Consensus 118 ~~~~i~ 123 (133)
T smart00288 118 DLSQIV 123 (133)
T ss_pred CchHHH
Confidence 444433
No 255
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=75.85 E-value=1.4e+02 Score=39.54 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHHHHcCCCC--ccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCCh
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKN--PPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 133 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i 133 (845)
+.+......|+..|+++....-+ .....-.+...+.++..+++.+.+.++|...+.++.++... ....+. .|+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s---~~~nIk--SGW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS---RVNNVK--SGW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH---HHhhhh--cCc
Confidence 44567888899988887552211 10111123456888888887777889999999999998743 233343 388
Q ss_pred HHHHHhhC----CCChhHHHHHHHHHHHhcCC
Q psy12605 134 PLFLRLLM----SPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 134 ~~L~~lL~----s~~~~v~~~a~~~L~nla~~ 161 (845)
+.+..++. +.++.+.+.|..++..|..+
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 88888886 34678888899988888743
No 256
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.65 E-value=45 Score=30.58 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=64.5
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.++..|.+-|.++++.++..|+..|-.+...+ ..+...+...+.+..|+.++....+..++..+...+.+....-...+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 36677778888899999999999999998774 55777788888999999999876677899999988888776554333
Q ss_pred Ch
Q psy12605 210 SM 211 (845)
Q Consensus 210 ~~ 211 (845)
.+
T Consensus 121 ~l 122 (142)
T cd03569 121 QL 122 (142)
T ss_pred cc
Confidence 33
No 257
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=75.33 E-value=10 Score=34.84 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~ 118 (845)
+..+. ..+.+.++.++..|+.-|..+..+.......++...+.+..|+.++....++.++..++..+..++.
T Consensus 39 ~ral~-KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 39 LKAIM-KRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 33444 7788999999999999999988877666667888889999999999654678999999999998874
No 258
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.18 E-value=46 Score=30.51 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=65.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCC
Q psy12605 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 492 (845)
Q Consensus 414 g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~ 492 (845)
.++..|-+-|.++++.++..|+..|..+..++ ..+...+...+.+..|.+++....+..++..+...+..-+......+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 35667778888999999999999999999874 66788888889999999999876667788787777777666554444
Q ss_pred ChhHHHh
Q psy12605 493 SMSTIIE 499 (845)
Q Consensus 493 ~~~~~~~ 499 (845)
.+..+.+
T Consensus 121 ~l~~i~~ 127 (142)
T cd03569 121 QLKYVVD 127 (142)
T ss_pred ccHHHHH
Confidence 4444433
No 259
>KOG2137|consensus
Probab=75.10 E-value=27 Score=40.28 Aligned_cols=207 Identities=14% Similarity=0.157 Sum_probs=111.8
Q ss_pred HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHh---cC
Q psy12605 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI---IG 160 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nl---a~ 160 (845)
+....++|.|++.|... ...-...-....++.+ .....+..-.+|.|...++.+++ .+.-+..+-++ ..
T Consensus 308 v~~~kiLP~L~~el~n~---~~vp~~LP~v~~i~~~---~s~~~~~~~~~p~l~pi~~~~~~--~~~~l~i~e~mdlL~~ 379 (700)
T KOG2137|consen 308 VLFQKILPTLVAELVNT---KMVPIVLPLVLLIAEG---LSQNEFGPKMLPALKPIYSASDP--KQALLFILENMDLLKE 379 (700)
T ss_pred HHHHhhhhHHHHHhccc---cccccccchhhhhhhc---cchhhhhhhhhHHHHHHhccCCc--ccchhhHHhhHHHHHh
Confidence 44456677777776321 2222222223333322 11222334467777777774322 12222222222 11
Q ss_pred --CChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHH
Q psy12605 161 --DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLW 237 (845)
Q Consensus 161 --~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~ 237 (845)
..++. ...++|.|...++.. +..++..++..+..+.+.-+ .......++|.+.++... .+..
T Consensus 380 Kt~~e~~-----~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~------ 444 (700)
T KOG2137|consen 380 KTPPEEV-----KEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLY------ 444 (700)
T ss_pred hCChHHH-----HHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchH------
Confidence 11222 223566666666655 56788888888888887553 223456778888777543 4455
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
++.+++-|+..+.+. .....-...+.++..-....++.+....+++..++.......
T Consensus 445 -------------------vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g 501 (700)
T KOG2137|consen 445 -------------------VKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG 501 (700)
T ss_pred -------------------HHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc
Confidence 778888888877721 122111233444555556778888888888888876543221
Q ss_pred HHHHhcCCccchhhHhhcCC
Q psy12605 318 TQVILNCDALSHFPALLTHP 337 (845)
Q Consensus 318 ~~~i~~~~~l~~L~~lL~~~ 337 (845)
..+.-..++|.++.+...+
T Consensus 502 -~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 502 -VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred -eeeehhhhhhhhhhhhhcc
Confidence 3344445777777666543
No 260
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.83 E-value=43 Score=30.32 Aligned_cols=74 Identities=11% Similarity=0.019 Sum_probs=60.0
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcC--CCCHHHHHHHHHHHHHhhcCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKP--DIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~--~~~~~~~~~a~~~L~~l~~~~ 205 (845)
++..|.+-|+++++.++..|+..|-.+...+.. +...+.....+..++.++.. ..+..++..+...+.+....-
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 567777888999999999999999999987754 67777776777788888876 457789999988888877654
No 261
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=74.59 E-value=1.6e+02 Score=38.90 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=43.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCh---hhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 142 SPHSNVCEQAVWALGNIIGDGP---QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 142 s~~~~v~~~a~~~L~nla~~~~---~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
+++..+...|+..|..++..-- +....=.+...+.++..++.+....++++.++.++.++....
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~ 1214 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSR 1214 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 3466788888888888774321 211112233467788887777777799999999999887654
No 262
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=74.43 E-value=12 Score=34.53 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=59.9
Q ss_pred CCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC-CCHHHHHHHHHHHHHhcCccc
Q psy12605 738 GVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH-ENVEIYKLAYDIIERYFSEVE 816 (845)
Q Consensus 738 ~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~ 816 (845)
.++..|.+=|.+.++.++..||..|..+++-++..+ ...+...++++.|..+... .+..|++++..+++.......
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f---h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF---HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH---HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 355566666777899999999999999999888764 3445567888888888877 678899999999998754444
No 263
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.90 E-value=34 Score=31.31 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=60.7
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHH---HHHHHHHHHHHhhcCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPIS---FLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~---~~~~a~~~L~~l~~~~~~ 207 (845)
++..|.+-|.++++.++..|+..|-.+...+ +.+...+.....+..|..++....... ++..+...+......-..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCC
Confidence 5667788889999999999999999998776 567777777778888888886544333 788888888777665544
Q ss_pred CCChh
Q psy12605 208 PPSMS 212 (845)
Q Consensus 208 ~~~~~ 212 (845)
.+.+.
T Consensus 123 ~~~~~ 127 (140)
T PF00790_consen 123 DPELS 127 (140)
T ss_dssp STTGH
T ss_pred CCCch
Confidence 44443
No 264
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=73.09 E-value=32 Score=40.23 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=70.9
Q ss_pred CHHHHHHhhccC---CChhHHHHHHHHHHHHhcC---ChhhHHHHHHcCChHHHHHhhCC----CChhHHHHHHHHHHHh
Q psy12605 89 ILPVLVECLERS---DRPNLQFEAAWALTNIASG---TSAQTQEVVAAGAVPLFLRLLMS----PHSNVCEQAVWALGNI 158 (845)
Q Consensus 89 ~i~~Lv~lL~~~---~~~~i~~~a~~~L~~la~~---~~~~~~~i~~~g~i~~L~~lL~s----~~~~v~~~a~~~L~nl 158 (845)
++..+.++++.. ..+.++..|..+++.+... +.+.....+-...++.|...|.. .+.+-+..++.+|||+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 366677777432 3445666666666665531 11111111122467777776643 4566678899999999
Q ss_pred cCCChhhHHHHHhcCChhhHHhhhc--CCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc--CCch
Q psy12605 159 IGDGPQLRDYVINMGVVPPLLSFIK--PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH--HDTS 231 (845)
Q Consensus 159 a~~~~~~r~~i~~~g~i~~Lv~ll~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~ 231 (845)
.... .++.+..++. ...+..+|..|+|+|..+....+ ...-+.+..++.+ ++++
T Consensus 474 g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 474 GHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIYLNRAEPPE 531 (574)
T ss_pred CChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHcCCCCChH
Confidence 7432 2344444443 23356899999999998876431 2334445555544 4555
No 265
>KOG1248|consensus
Probab=72.76 E-value=2.5e+02 Score=34.83 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHH------HHHHhcCChhhHHHHHH-
Q psy12605 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWA------LTNIASGTSAQTQEVVA- 129 (845)
Q Consensus 57 ~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~------L~~la~~~~~~~~~i~~- 129 (845)
.+..+...++.++..+...... ....-..+-++..+.++= .+.+ +.+.-..|. -..++....+.. +.+
T Consensus 236 s~v~v~~~~~q~l~~lf~~~~~-~l~a~~~a~lL~al~~l~-ps~~-D~~~t~~W~~v~~~~~~~la~~q~~~~--~~~~ 310 (1176)
T KOG1248|consen 236 SPVLVLLEVLQCLHSLFKKHPT-ALAAELNARLLTALMTLS-PSEN-DDLLTVAWLKVLNEAHDILATLQEEKA--LQAL 310 (1176)
T ss_pred chHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHhC-CCcc-chHHHHHHHHHHHHHHHHHHHhCHHHH--HHhh
Confidence 3455677778888777664432 223333344455544443 3332 333333331 223333333322 111
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.+.++..+.++.++.+++...+-.++-++-.++...-+.+... .+-.++..... .+.+.+..+++-++..-.. .
T Consensus 311 ~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~----~~~~~l~~kf~-~~~~~ilqi~s~~fek~G~-~ 384 (1176)
T KOG1248|consen 311 PRLFSLFFTILESLIEELVQAASQSLKEILKESVTVIDALCSK----QLHSLLDYKFH-AVWRFILQILSALFEKCGE-L 384 (1176)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCcccHHHHHH----HHHHHHcchHH-HHHHHHHHHHHHHHHHhhh-h
Confidence 3577778888889999999999999999988887644444332 34445544432 5666666666666653322 1
Q ss_pred ChhHHhhHHHHHHhhcccC
Q psy12605 210 SMSTIIELLPALNILIHHH 228 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~ 228 (845)
.-......+..|..+=.++
T Consensus 385 s~~~l~~~L~~l~~lr~~~ 403 (1176)
T KOG1248|consen 385 SGPELTKTLEGLCDLRASP 403 (1176)
T ss_pred cCHHHHHHHHHHHHhhcCC
Confidence 1123334444444433333
No 266
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=72.38 E-value=21 Score=33.70 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=74.6
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh---
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID--AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA--- 400 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~--- 400 (845)
....+..+|.++++.-|..++..+.-++..++. +.+.+ ...+..++..+++. +.+.++..++.++..+.
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~----~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKP----DPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHh
Confidence 456688888888888888887777776555421 33333 34577888888886 57788889999998876
Q ss_pred cCChHhHHHHHHc---CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 401 SGTSAQTQEVVAA---GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 401 ~~~~~~~~~l~~~---g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
.+.++..+++... +.++.+++++++ ......++.+|..+....
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 3556666665443 334555555554 556667777776665533
No 267
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.29 E-value=1.5e+02 Score=32.21 Aligned_cols=236 Identities=11% Similarity=0.116 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-----CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh
Q psy12605 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-----KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF 330 (845)
Q Consensus 256 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L 330 (845)
+++..+|..+...+....+..+.++. ..+.....+|.+ ....+...|++.|..++.. ...+..+...+.++.+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~-~~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAES-PHHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTS-HHHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcc-hhHHHHhCCHHHHHHH
Confidence 36666777776555444443333322 334444444421 2344666778888776543 2211111111111111
Q ss_pred hHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHH
Q psy12605 331 PALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 331 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 410 (845)
+.- -++=|++....+ ..+.+.+-.+-+-+-+... +...-+..|+..+..++.........+
T Consensus 189 ie~-------------VI~Pnl~~~e~D--~ElfEddP~EYIrrd~e~s----d~~TrR~AA~dfl~~L~~~~~~~v~~i 249 (370)
T PF08506_consen 189 IEK-------------VIFPNLCLREED--EELFEDDPEEYIRRDLEGS----DSDTRRRAACDFLRSLCKKFEKQVTSI 249 (370)
T ss_dssp HHH-------------THHHHHS--HHH--HHHHHHSHHHHHHHHSCSS-------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------------hccCccCCCHHH--HHHHccCHHHHHHhhcccc----ccCCcHHHHHHHHHHHHHHHhHHHHHH
Confidence 110 112233222211 2333333333333333221 345667788888888886544333333
Q ss_pred HHcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCChHH------------HHHHHhCCChHHHHhccCCCCChh-HHH
Q psy12605 411 VAAGAVPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQL------------RDYVINMGVVPPLLSFIKPDIPIS-FLR 475 (845)
Q Consensus 411 ~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~------------~~~l~~~g~l~~L~~ll~~~~~~~-~~~ 475 (845)
+..-.-..|-+.-. +.+..-+..|+..++.++..+... -..+...-+++.|. ...+... ++.
T Consensus 250 ~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka 326 (370)
T PF08506_consen 250 LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKA 326 (370)
T ss_dssp HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHH
T ss_pred HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHH
Confidence 22111111222222 345567779999999998755321 12223333444443 1222233 455
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHH
Q psy12605 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 519 (845)
Q Consensus 476 ~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~ 519 (845)
.+++.+.-+...- +......++|.+...+.+++..|.+++
T Consensus 327 ~aik~~~~Fr~~l----~~~~l~~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 327 DAIKFLYTFRNQL----PKEQLLQIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp HHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCCCcchhhhh
Confidence 6777777665432 346778899999999998888777664
No 268
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.11 E-value=36 Score=38.17 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH
Q psy12605 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~ 137 (845)
.++....-+..+..+.... ++.. .-+-.|.+..++.-+ .+++..+|..++.+|+-+... -.-.....-+|.+..|.
T Consensus 63 i~dRil~fl~~f~~Y~~~~-dpeg-~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~ 138 (885)
T COG5218 63 IPDRILSFLKRFFEYDMPD-DPEG-EELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLS 138 (885)
T ss_pred cHHHHHHHHHHHHHhcCCC-Chhh-hHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 3555555555555433322 2221 222345566666666 467789999999999998743 33444566678888888
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCC--hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGDG--PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~~--~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
+-+-+..+.+|..|+.+|..+-... ++++ ....++..++++.+.++|+.|+ .|+.-++.
T Consensus 139 ~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~al---lni~vdns 199 (885)
T COG5218 139 ERLFDREKAVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLAL---LNISVDNS 199 (885)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHH---HHeeeCCC
Confidence 8888888999999999999886443 3332 2446778888887778888764 45554443
No 269
>KOG0413|consensus
Probab=71.74 E-value=2.4e+02 Score=34.17 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhh
Q psy12605 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635 (845)
Q Consensus 596 ~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~ 635 (845)
.+.++..+.-++++++-..... ....+|.|++-|+
T Consensus 944 ~~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe 978 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELE 978 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHH
Confidence 3567888888999988544432 2246788887774
No 270
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=71.38 E-value=84 Score=37.24 Aligned_cols=138 Identities=15% Similarity=0.201 Sum_probs=99.8
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+|.+++ .+|.++|......+-..+...+...+.+ + ++..||.+.-..++ ..|+.+|..+- .+ +
T Consensus 4 ~~~~~l~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~--~P-~ 67 (668)
T PF04388_consen 4 ASITELL-SLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQ--EP-H 67 (668)
T ss_pred ccHHHHH-HHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcC--Cc-c
Confidence 4577888 8999999999999999998888765432 2 36677766523333 34566676653 23 1
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
-+. .+..|-..+.. +.-|..++..|+.+....+.--..|.+...++.|+.+|..+.+..+...|+.+|.-|.-
T Consensus 68 ~K~-----~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 68 DKH-----LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred HHH-----HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 122 23334445553 46788999999999988888888889999999999999998888888888888877764
Q ss_pred C
Q psy12605 204 N 204 (845)
Q Consensus 204 ~ 204 (845)
.
T Consensus 141 ~ 141 (668)
T PF04388_consen 141 H 141 (668)
T ss_pred c
Confidence 3
No 271
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.14 E-value=36 Score=38.13 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=68.3
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
|.+..++.-+.+++..+|..++..|+-+.....+. ...+-.+++..|.+-+-+ ..+.|+.+|..+|+.+-....
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~D-----RE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFD-----REKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHhccC
Confidence 56777888888999999999999999885544332 333445666666666655 378999999999999874322
Q ss_pred HhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHH
Q psy12605 405 AQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVW 436 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~ 436 (845)
+.... ....|+.+++ +++.+||..|+.
T Consensus 165 neen~-----~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 165 NEENR-----IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred ChHHH-----HHHHHHHHHhcCcHHHHHHHHHH
Confidence 21111 1235566665 566778876654
No 272
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.70 E-value=58 Score=29.46 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=58.6
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHhCCChHHHHhccCC--CCChhHHHHHHHHHHHhhcCCC
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKP--DIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~--~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
++..|-+-|.++++.++..|+..|-.+..++.. +...+.....+..|++++.. ..+.+++..+..++.......+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456677888899999999999999999987754 77777777888889999876 4556777777777776666543
No 273
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=69.97 E-value=53 Score=30.02 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=60.7
Q ss_pred HHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh-hHHHHHHcCChHHHHHhhCC
Q psy12605 64 LAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA-QTQEVVAAGAVPLFLRLLMS 142 (845)
Q Consensus 64 ~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~-~~~~i~~~g~i~~L~~lL~s 142 (845)
.....++..+...++.+.+ .+..+.+-| .+.+|.++..|+..|-.+.+.+.. ....+...+.+..|+++++.
T Consensus 20 ~~ileicD~In~~~~~~k~------a~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~ 92 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQL------AVRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSP 92 (139)
T ss_pred HHHHHHHHHHHcCCccHHH------HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcc
Confidence 3455555555443332222 366677777 467889999999988888875433 34556667888899999963
Q ss_pred ------CChhHHHHHHHHHHHhc
Q psy12605 143 ------PHSNVCEQAVWALGNII 159 (845)
Q Consensus 143 ------~~~~v~~~a~~~L~nla 159 (845)
.+..|+..++..+...+
T Consensus 93 k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 93 KYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHH
Confidence 46788998888887766
No 274
>KOG2933|consensus
Probab=69.18 E-value=11 Score=38.60 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=88.3
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 212 (845)
+...+..|++.+.+...-++..+..++...++........ .|..+++-+++.. ..+-+.|+.++..+....+....
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~i~-- 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNSID-- 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4445566677777777777777777776555433332221 3555666676663 47889999999998886643221
Q ss_pred HHhhHHHH-HHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhh
Q psy12605 213 TIIELLPA-LNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291 (845)
Q Consensus 213 ~~~~~l~~-L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 291 (845)
..+.. +..++...+.+ +.-++++|-.+|..+..+-.- .-+++.|+..
T Consensus 166 ---~~ld~lv~~Ll~ka~~d----------------------nrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~ 213 (334)
T KOG2933|consen 166 ---QELDDLVTQLLHKASQD----------------------NRFVREDAEKALVAMVNHVTP-------QKLLRKLIPI 213 (334)
T ss_pred ---HHHHHHHHHHHhhhccc----------------------chHHHHHHHHHHHHHHhccCh-------HHHHHHHHHH
Confidence 13333 33344433322 111788888888877755322 1345677888
Q ss_pred ccCCchhhHHHHHHHHHHHh
Q psy12605 292 LSHKEVKVQTASLRAVGNIV 311 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~ 311 (845)
+++.++.++..++.+..+..
T Consensus 214 ~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 214 LQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred Hhhhchhhhhhhhccccccc
Confidence 88888888888777666553
No 275
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=68.53 E-value=1.4e+02 Score=33.34 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH
Q psy12605 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 138 (845)
Q Consensus 59 ~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~ 138 (845)
-..+..|+.+|..+++.-.......+. -+.|+.+| .+....-|..|+-++..++.........-.-....+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 356788999999998875443333331 12688999 4555566778888999998754332211101235677777
Q ss_pred hhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCC
Q psy12605 139 LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV 174 (845)
Q Consensus 139 lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~ 174 (845)
.|..+.+..-......+..+-.++...-..+.+.|.
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 887554333333333333333333334444455555
No 276
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=68.36 E-value=13 Score=36.89 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHcCCh-------HHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHH-HhcCC
Q psy12605 104 NLQFEAAWALTNIASGTSAQTQEVVAAGAV-------PLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYV-INMGV 174 (845)
Q Consensus 104 ~i~~~a~~~L~~la~~~~~~~~~i~~~g~i-------~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i-~~~g~ 174 (845)
.-|+.|+.+|++++-. ..+.+.+...+-. ..|+++|.. .++-.||-|+-.|.+++..++.....+ .+.+.
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4689999999999864 5677766665544 444555544 477889999999999998887665554 47789
Q ss_pred hhhHHhhhcCC
Q psy12605 175 VPPLLSFIKPD 185 (845)
Q Consensus 175 i~~Lv~ll~~~ 185 (845)
|..|+.++...
T Consensus 218 i~~Li~FiE~a 228 (257)
T PF12031_consen 218 ISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 277
>KOG1410|consensus
Probab=67.68 E-value=2.4e+02 Score=32.62 Aligned_cols=302 Identities=14% Similarity=0.121 Sum_probs=143.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
++.+...+..+.|+..+..|-.+|..+..+. + .+...--+|..++.|--+..|+.+|.++.++... ..
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~sp-e----------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-lp 74 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSESP-E----------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-LP 74 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCH-H----------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-Cc
Confidence 4566655668999999999999999874432 2 2444444556666777788888888888765321 11
Q ss_pred HHHHcCChHHHHHhhCCCChhHHH----HHHHHHHHhcCCC--hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCE----QAVWALGNIIGDG--PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~----~a~~~L~nla~~~--~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
.....+.-..++..|.++.|++.- .-+..++.+..-. ...++...-.+.+..+.++++.++ .+-..-++.+|.
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~-ve~~~igv~iLs 153 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDN-VEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCc-hHHHHHHHHHHH
Confidence 111123445666777665444332 2223333333211 111122222234566667776552 223333444444
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhh--HHHHHHHHHHHHHhhcCChhhHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK--MKILVDTVWALSYLTDGGNDQIQ 277 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~ 277 (845)
.+.. =++..|+.... .....+..-|.+. .++..-++..|.+....+-+..
T Consensus 154 qLvq--------------------emN~~~~~~p~-------tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~- 205 (1082)
T KOG1410|consen 154 QLVQ--------------------EMNQADGMDPS-------TKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDR- 205 (1082)
T ss_pred HHHH--------------------HhhCCCCCCcc-------hHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccH-
Confidence 4433 22222111000 0000111111111 1255566666665543221111
Q ss_pred HHHhcCchhhHHhhc---------cC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHH
Q psy12605 278 MVIDSGVVPSLIPLL---------SH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVW 347 (845)
Q Consensus 278 ~~~~~g~i~~Lv~lL---------~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~ 347 (845)
.+.|.+..++.+- .+ .+++ ..-+++. .-....+..+.+...++.+.++..+-.+..-+.|+.
T Consensus 206 --~q~~L~~~vL~L~l~Cl~FDfiGss~DEs-----sed~ctV-QIPTsWRs~f~d~stlqlfFdly~slp~~~S~~als 277 (1082)
T KOG1410|consen 206 --AQLGLLMQVLKLNLNCLNFDFIGSSTDES-----SEDLCTV-QIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALS 277 (1082)
T ss_pred --hHhhHHHHHHHHHhhhccccccccccccc-----cccccce-ecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHH
Confidence 0112222222111 00 0100 0011111 112345677777788888889998888888899999
Q ss_pred HHHHhhcCC------hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 348 FLSNITAGN------QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 348 ~L~nl~~~~------~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
+|..++... .+..+.+ ..++.-..+.+.++... .++.--.+-|+.++.+
T Consensus 278 clvqlASvRRsLFN~aeRa~yl--~~Lv~Gvk~il~np~~L-sD~~nyHeFCRllaRl 332 (1082)
T KOG1410|consen 278 CLVQLASVRRSLFNGAERAKYL--QHLVEGVKRILENPQGL-SDPANYHEFCRLLARL 332 (1082)
T ss_pred HHHHHHHHHHHHhCCHHHHHHH--HHHHHHHHHHHhCCcCC-CCcchHHHHHHHHHHH
Confidence 999886421 1111111 12344445555554322 3444445555555554
No 278
>KOG1566|consensus
Probab=66.98 E-value=1.7e+02 Score=30.57 Aligned_cols=205 Identities=12% Similarity=0.145 Sum_probs=130.2
Q ss_pred HHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh----hHHHHhc-CCccchhhHhhcCCchhhHHHHHHHHH
Q psy12605 276 IQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE----QTQVILN-CDALSHFPALLTHPKEKICKEAVWFLS 350 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~----~~~~i~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~ 350 (845)
.+.+.++|.+..++..+..-+-+.+.-++.+..++-...-. ....+.. ...+..++.--.. .+++.-.+-..+.
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 35677889999999999888888888888888887542211 1111111 1222333332111 2455555555555
Q ss_pred HhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCC----hHHHHHhhCCC
Q psy12605 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGA----VPLFLRLLMSP 426 (845)
Q Consensus 351 nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~----i~~Lv~lL~~~ 426 (845)
....+ +...+.+....-......++..+ .-++...|..++..+...+......+..... .+.--.++.++
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p-----~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~ 224 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLP-----NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE 224 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhcc-----chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc
Confidence 55443 55557777777778877777764 6688888888888887766666666665554 44467789999
Q ss_pred CHHHHHHHHHHHHHhhcCCh---HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 427 HSNVCEQAVWALGNIIGDGP---QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 427 ~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.-++.++...|+.+..+.+ ...+++.....+..+..+|...+. .++-.+.-.+.-+..++
T Consensus 225 Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdksk-niQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 225 NYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK-NIQLEAFHVFKVFVANP 288 (342)
T ss_pred ceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc-cchHHHHHHHHHHhcCC
Confidence 99999999999999876543 334455555667777777765433 44444444444444433
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=65.61 E-value=46 Score=30.44 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=61.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHhccCCCCChh---HHHHHHHHHHHhhcCCCC
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPIS---FLRNVTWVIVNLCRNKDP 490 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~---~~~~~~~~l~nL~~~~~~ 490 (845)
++..|-+-|.+.++.++..|+..|..+..++ +.++..+.....+..|..++.+..... ++..+...+.........
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCC
Confidence 4566778888999999999999999999876 567777777778888888887555433 666666666655555544
Q ss_pred CCChhHHHhH
Q psy12605 491 PPSMSTIIEL 500 (845)
Q Consensus 491 ~~~~~~~~~~ 500 (845)
.+.+..+.+.
T Consensus 123 ~~~~~~i~~~ 132 (140)
T PF00790_consen 123 DPELSLIQDT 132 (140)
T ss_dssp STTGHHHHHH
T ss_pred CCCchHHHHH
Confidence 4444444433
No 280
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=64.82 E-value=1e+02 Score=31.81 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=89.6
Q ss_pred HHHHHHhhccCCC-hhHHHHHHHHHHHHhcCChhhHHHHHHcC--ChHHHHHhhCC----CChhHHHHHHHHHHHhcCCC
Q psy12605 90 LPVLVECLERSDR-PNLQFEAAWALTNIASGTSAQTQEVVAAG--AVPLFLRLLMS----PHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 90 i~~Lv~lL~~~~~-~~i~~~a~~~L~~la~~~~~~~~~i~~~g--~i~~L~~lL~s----~~~~v~~~a~~~L~nla~~~ 162 (845)
...+...+. .+ ++.+.-+...++-++.+ +.....+...+ ....+..++.. ..+..+--++++++|+..+
T Consensus 65 ~~~~~~~~~--~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~- 140 (268)
T PF08324_consen 65 LILLLKILL--SWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH- 140 (268)
T ss_dssp HHHHHHHHC--CS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHH--hCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-
Confidence 444555552 22 24577778888777654 54544444332 24444444433 4667888999999999865
Q ss_pred hhhHHHHHhc-C-ChhhHHhhhcCCC---CHHHHHHHHHHHHHhhcCCCCCC-ChhHHhhHHHHHHhhccc--CCchhhH
Q psy12605 163 PQLRDYVINM-G-VVPPLLSFIKPDI---PISFLRNVTWVIVNLCRNKDPPP-SMSTIIELLPALNILIHH--HDTSVSI 234 (845)
Q Consensus 163 ~~~r~~i~~~-g-~i~~Lv~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll~~--~~~~~~~ 234 (845)
+..+..+.+. + .+...+..+.... +..++..++..+.|++-...... ........+..+...+.. .|++
T Consensus 141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~E--- 217 (268)
T PF08324_consen 141 PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEE--- 217 (268)
T ss_dssp CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHH---
T ss_pred CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHH---
Confidence 5577777654 2 2333333333332 46788888888999865331111 112233455666663322 4555
Q ss_pred HHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh
Q psy12605 235 YLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ 275 (845)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 275 (845)
+...++-+++++...+...
T Consensus 218 ----------------------a~~R~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 218 ----------------------ALYRLLVALGTLLSSSDSA 236 (268)
T ss_dssp ----------------------HHHHHHHHHHHHHCCSHHH
T ss_pred ----------------------HHHHHHHHHHHHhccChhH
Confidence 7778888888888655443
No 281
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=64.20 E-value=42 Score=34.63 Aligned_cols=85 Identities=25% Similarity=0.310 Sum_probs=61.1
Q ss_pred HHHHHHcCCchHHhhhhc-----------cccHHHHHHHHHHHHHHHHhhHHH------------HHHHHHHHHHhChHH
Q psy12605 731 VAKLVQEGVIPPFCDLLS-----------CKDAQVIQVVLDGINNMLKMADAQ------------VETLANMIEECGGLD 787 (845)
Q Consensus 731 ~~~l~~~~~i~~L~~~L~-----------~~d~~~~~~al~~L~~l~~~~~~~------------~~~~~~~~~e~g~~~ 787 (845)
..++.+.+++..+++.+. ..|..+++..+..+.|++..++.. -++....|.+.|+.+
T Consensus 102 K~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~ 181 (266)
T PF04821_consen 102 KEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLD 181 (266)
T ss_pred HHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHH
Confidence 345556677777776552 246789999999999999985431 245788999999999
Q ss_pred HHHhhhcCCCHHHH-HHHHHHHHHhcCcc
Q psy12605 788 KIEMLQNHENVEIY-KLAYDIIERYFSEV 815 (845)
Q Consensus 788 ~L~~l~~~~~~~v~-~~a~~~l~~~~~~~ 815 (845)
.|..+.++.+..-| ....+++.-+|...
T Consensus 182 lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 182 LLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 99999988744433 35667777777665
No 282
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.94 E-value=30 Score=31.57 Aligned_cols=72 Identities=8% Similarity=0.014 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc-----CCChhHHHHHHHHHHHHhc
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER-----SDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~i~~~a~~~L~~la~ 118 (845)
+..+. ..|++.++.++..|+..|-.+..+.......++...+.+.-|++++.. ..++.++..++..+..++.
T Consensus 40 ~rai~-krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 40 VRLLA-HKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44444 788999999999999999888887766566777788899999999942 1356899999888888874
No 283
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=61.55 E-value=24 Score=36.45 Aligned_cols=109 Identities=18% Similarity=0.169 Sum_probs=65.7
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh----cCC---chhhHHHHHHHHHHhhcCChHHH-HHHHhc
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL----THP---KEKICKEAVWFLSNITAGNQAQV-QAVIDA 366 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL----~~~---~~~~~~~a~~~L~nl~~~~~~~~-~~l~~~ 366 (845)
..+..+.-++|+++|+..+ +..++.+.+... ..+...+ .+. +..++..++..+.|++....... ..-...
T Consensus 122 ~~~~~~ml~lR~l~NlF~~-~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSH-PPGRQLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTS-CCCHHHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CcHHHHHHHHHHHHHhhCC-CccHHHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 5677888999999999765 444555554432 2233332 332 68889999999999854211110 000111
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ 408 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (845)
.++..+++.+.... .+++....++.+++++...++....
T Consensus 200 ~ll~~i~~~~~~~~---~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 200 ELLSSIIEVLSREE---SDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHHCHCCH---TSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHhcccc---CCHHHHHHHHHHHHHHhccChhHHH
Confidence 23445555332221 5889999999999999976654443
No 284
>KOG1832|consensus
Probab=60.82 E-value=3.6e+02 Score=32.36 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhhcCChHH-----------------------------------HHHHHhCCChHHHHhccCCCC--
Q psy12605 427 HSNVCEQAVWALGNIIGDGPQL-----------------------------------RDYVINMGVVPPLLSFIKPDI-- 469 (845)
Q Consensus 427 ~~~v~~~a~~~L~nl~~~~~~~-----------------------------------~~~l~~~g~l~~L~~ll~~~~-- 469 (845)
+++++..|+.+|-|+..-.|.+ ...+....+|..|+++|+-..
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~ 754 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPP 754 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCC
Confidence 6789999999999876433222 234445578999999987332
Q ss_pred --ChhHHHHHHHHHHHhhcCC
Q psy12605 470 --PISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 470 --~~~~~~~~~~~l~nL~~~~ 488 (845)
...++..+|.+|..|+|..
T Consensus 755 t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 755 TTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred CcHHHHHHHHHHHHhccccCc
Confidence 2567778889999888866
No 285
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=60.56 E-value=2.1e+02 Score=29.46 Aligned_cols=224 Identities=14% Similarity=0.102 Sum_probs=117.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
+.|+++|+..|.+|+..|...+..-+. ......-+..|++.+... ++...-..++..+..+..... ..... ..
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~----~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~-~~ 79 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPP----DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPES-AV 79 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCH----hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhh-HH
Confidence 678999999999999999998875432 112222356666666211 334444455677777664321 11111 01
Q ss_pred CChHHHHHhhC--CCChhHHHHHHHHHHHhcCCChhhHHHHHhc--CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 131 GAVPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQLRDYVINM--GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 131 g~i~~L~~lL~--s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
..+..+.+-.. +-....|..+...|..+... .+..+... +.+..+++.+..+.+..-.-.+...+..+...-+
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN---HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH---hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 12223332211 22456688888888888743 33444333 3566677777666555555555555655555443
Q ss_pred CCCChhHHhhHHHHHHhhc---ccCCchhhHHHHHHHhhhCh-hhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc
Q psy12605 207 PPPSMSTIIELLPALNILI---HHHDTSVSIYLWLSIIEKNP-QISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS 282 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll---~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 282 (845)
... ..+.....+.... ..+.+. +| .| ..++-..+|...-...+. + ..
T Consensus 157 ~~~---~~e~lFd~~~cYFPI~F~pp~~------------dp~~I---------T~edLk~~L~~cl~s~~~----f-a~ 207 (262)
T PF14500_consen 157 ISE---FAEDLFDVFSCYFPITFRPPPN------------DPYGI---------TREDLKRALRNCLSSTPL----F-AP 207 (262)
T ss_pred cch---hHHHHHHHhhheeeeeeeCCCC------------CCCCC---------CHHHHHHHHHHHhcCcHh----h-HH
Confidence 211 1122222221111 111110 00 00 222333333322222221 1 34
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcC
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~ 313 (845)
-.++.|++-|.++.+.++.-++.+|..++..
T Consensus 208 ~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 208 FAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999988754
No 286
>KOG1949|consensus
Probab=60.06 E-value=2.2e+02 Score=33.15 Aligned_cols=136 Identities=17% Similarity=0.199 Sum_probs=83.4
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhc-CChh----hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh
Q psy12605 91 PVLVECLERSDRPNLQFEAAWALTNIAS-GTSA----QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 91 ~~Lv~lL~~~~~~~i~~~a~~~L~~la~-~~~~----~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
|.|..-| ...|..+|..|+..+.++-= .+++ -.+.+++ .-...|.++|+++-+.+|..|...+..+...--+.
T Consensus 177 p~l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444445 24678999999999988652 2222 2344444 35778899999999999999988887775321110
Q ss_pred --HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhh
Q psy12605 166 --RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 233 (845)
Q Consensus 166 --r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 233 (845)
...+.+ .+..+..-+..++..++|-.....|..+..++ ......+.++|.+-..+.+....++
T Consensus 255 iP~~i~~~--ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~~Lpal~~~l~D~se~VR 319 (1005)
T KOG1949|consen 255 IPPTILID--LLKKITDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQLLPALRYSLHDNSEKVR 319 (1005)
T ss_pred cCHHHHHH--HHHHHHHHhhhccchheehhHhcCcHHHHcCc---cchhHHHHHHHhcchhhhccchhHH
Confidence 011111 22333444455555577777777777777654 3334456677777667766666633
No 287
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=59.35 E-value=1.6e+02 Score=31.24 Aligned_cols=203 Identities=14% Similarity=0.134 Sum_probs=108.6
Q ss_pred hHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchh-HHHHHHHHHHHHHhhHhHhhhhcc
Q psy12605 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMV-LHNVLLQMSVFLQNVEERMIYSSF 676 (845)
Q Consensus 598 ~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 676 (845)
.++++.+..+.......++. ..+...++|.+++.+ +.-|.++.... -..|+..++++.++++.... ..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~--~~v~~~~i~~l~~~v-------L~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~-~~- 110 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP--EEVANNFIPPLLDAV-------LGDYQNSVPDAREPEVLSLMATIINKLGELIQ-PQ- 110 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H--HHHHHHTHHHHHHHH-------HHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCC-CC-
T ss_pred HHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHH-------HHHHhcCCccccChhHHHHHHHHHHHHHHhhh-hh-
Confidence 56777777776666443321 123445777777644 23344332222 24467777887777665321 00
Q ss_pred ccCccchhccccCcchhhhhhhhh-hcc-CCCCCccchhHHHHHHHhhcccCCHHHHHHHH---HcCCchHHhhhhcccc
Q psy12605 677 QKTSPLRVAATGGFTLFAFISRFQ-LMF-FPQGEFQTQKEAAWAISNLTISGNRDQVAKLV---QEGVIPPFCDLLSCKD 751 (845)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~---~~~~i~~L~~~L~~~d 751 (845)
...+ +..+-...+ +.. --..-|+.|..-...+..+...+ ......+= -..++..++..+++.+
T Consensus 111 ----v~~I-------~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~-f~~l~~lp~~~f~~~idsi~wg~kh~~ 178 (319)
T PF08767_consen 111 ----VPQI-------LEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC-FPALLQLPPEQFKLVIDSIVWGFKHTN 178 (319)
T ss_dssp ----HHHH-------HHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH-THHHHHS-HHHHHHHHHHHHHHHTSSS
T ss_pred ----HHHH-------HHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh-HHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 0000 011111111 111 12234678887777777776322 22221111 1135567777888899
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHH----hhhcCCCHHHHHHHHHHHHHhcCcccCCCCCCC
Q psy12605 752 AQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIE----MLQNHENVEIYKLAYDIIERYFSEVEDEDNLGP 823 (845)
Q Consensus 752 ~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~----~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 823 (845)
.++...++.+|..++........+....|.+.-..+.|. .+..+....-.+.-..+|.++|...+...-..|
T Consensus 179 ~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~ 254 (319)
T PF08767_consen 179 REISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVP 254 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHccccccc
Confidence 999999999999999877652233445555555545544 445555555666777888888876554443333
No 288
>KOG0413|consensus
Probab=59.04 E-value=54 Score=39.11 Aligned_cols=135 Identities=16% Similarity=0.271 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH
Q psy12605 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 138 (845)
Q Consensus 59 ~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~ 138 (845)
+..+-.++..+.+++-.... .....+|.|++-|..++.-.+|-+...+++.+|.+.. +++ .-.||.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~------LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~-d~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR------LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT-DRYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH-HHhhHHHHH
Confidence 44566678888887654322 2233699999999777777788888888888886421 122 347999999
Q ss_pred hhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcC--ChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 139 LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG--VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 139 lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g--~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
.|.++++-+|.+++-.|.+|-... .+.=.| .+..++.++..+ .+++.-|-.+++.+....+|.--.
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~D~~--edIr~~a~f~~~~vL~~~~P~~f~ 1081 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALLDAN--EDIRNDAKFYISEVLQSEEPNFFP 1081 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHcccC--HHHHHHHHHHHHHHHhhcCccchH
Confidence 999999999999999999997442 111122 355566666554 479999999999998877655443
No 289
>KOG2933|consensus
Probab=58.86 E-value=49 Score=34.22 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh-c
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL-T 335 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL-~ 335 (845)
...+++..+..|+....+....... .++-.++.-++.....|-..|+.+++.+.+..... +.+ .+..++..| .
T Consensus 104 ~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~---i~~--~ld~lv~~Ll~ 177 (334)
T KOG2933|consen 104 DKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS---IDQ--ELDDLVTQLLH 177 (334)
T ss_pred HHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHh
Confidence 7788888888888766554333222 34556677778888899999999999997643332 222 333344444 2
Q ss_pred C---CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 336 H---PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 336 ~---~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
. .+.-+++.|-.+|..++.+.... .+++.|+..+.+ .++.++..++.++.+..
T Consensus 178 ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~-----~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 178 KASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQH-----SNPRVRAKAALCFSRCV 233 (334)
T ss_pred hhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhh-----hchhhhhhhhccccccc
Confidence 2 34568888888888886664432 245667777666 37788888877666643
No 290
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=57.79 E-value=1.4e+02 Score=26.57 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=57.8
Q ss_pred HHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhc--
Q psy12605 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQN-- 794 (845)
Q Consensus 717 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~-- 794 (845)
.-+++++ ..++..... +...|.+=|+..++.|...+|.+|-.++..|...|... .-+....+..+.....
T Consensus 23 ~Eia~~t-~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~--~~~~~~~Ik~~~~f~g~~ 94 (122)
T cd03572 23 EEIAKLT-RKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRE--LQRNSAQIRECANYKGPP 94 (122)
T ss_pred HHHHHHH-HcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHH--HHHhHHHHHHHHHcCCCC
Confidence 3455555 234444333 44577777788889999999999999999987654221 1122223334444333
Q ss_pred ------CCCHHHHHHHHHHHHHhcCcc
Q psy12605 795 ------HENVEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 795 ------~~~~~v~~~a~~~l~~~~~~~ 815 (845)
..+..|+..|.+++.-+|..+
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHhccC
Confidence 224569999999999888754
No 291
>KOG1992|consensus
Probab=57.30 E-value=4e+02 Score=31.77 Aligned_cols=238 Identities=11% Similarity=0.145 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-----chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-----EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFP 331 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~ 331 (845)
++...|....--+...++..+.++. ..+.....+|.+. -......|+..|.+++.. ......+...+++..+.
T Consensus 263 lka~ICEi~~LY~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r-~~y~~~F~~~~vl~~i~ 340 (960)
T KOG1992|consen 263 LKAQICEIFNLYATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR-PHYAELFEGENVLAQIC 340 (960)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh-hhhHhhhcchHHHHHHH
Confidence 5556666665444444444443322 3444445555322 245677888888888754 33333444444444444
Q ss_pred HhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhH-HHHHHHHHHHHhcCChHhHHHH
Q psy12605 332 ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNL-QFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 332 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l 410 (845)
+...-++-.+|. ..+.+.+.+-+.-+-+-+... +.+. |+.|+..+..++..-......+
T Consensus 341 e~VvlpN~~lR~---------------eDeElFED~pleYiRRDlEGs-----DvdTRRR~a~dlvrgL~~~fe~~vt~v 400 (960)
T KOG1992|consen 341 EKVVLPNLILRE---------------EDEELFEDNPLEYIRRDLEGS-----DVDTRRRAAIDLVRGLCKNFEGQVTGV 400 (960)
T ss_pred Hhhcccccccch---------------hhHHHhccCHHHHHHHhcccC-----CcchhHHHHHHHHHHHHHHhcchhHHH
Confidence 433322222221 113344444444444444432 4444 4667777777877654444444
Q ss_pred HHcCChHHHHHhhCCCCH--HHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHH---------hccCCC-CChhHHHHHH
Q psy12605 411 VAAGAVPLFLRLLMSPHS--NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL---------SFIKPD-IPISFLRNVT 478 (845)
Q Consensus 411 ~~~g~i~~Lv~lL~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~---------~ll~~~-~~~~~~~~~~ 478 (845)
+....-..|-++..+++. .-+..++.....++......+.-+....-+-.++ ++.... .+-.+++..+
T Consensus 401 ~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~a 480 (960)
T KOG1992|consen 401 FSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADA 480 (960)
T ss_pred HHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcc
Confidence 433333333344444433 3344566666666544322221111111111111 111101 1111222211
Q ss_pred HHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHH
Q psy12605 479 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 519 (845)
Q Consensus 479 ~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~ 519 (845)
--..-..| ..........++|.+.+.+..+...|-+|+
T Consensus 481 IKy~~~FR---~ql~~~~lm~~~p~li~~L~a~s~vvhsYA 518 (960)
T KOG1992|consen 481 IKYIYTFR---NQLGKEHLMALLPRLIRFLEAESRVVHSYA 518 (960)
T ss_pred cceeeeec---ccCChHHHHHHHHHHHHhccCcchHHHHHH
Confidence 11111111 223446667788888888888777666653
No 292
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=57.15 E-value=1.5e+02 Score=32.33 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhh---CCCChhHHHHHHHHHHHhcCCChhh------------HH
Q psy12605 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL---MSPHSNVCEQAVWALGNIIGDGPQL------------RD 167 (845)
Q Consensus 103 ~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL---~s~~~~v~~~a~~~L~nla~~~~~~------------r~ 167 (845)
..-|..|+..|..+++.-.+....++. +.+..++.-. .+.+..-++.|+..++.++...... -.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 346778888898998642222222221 1222222211 1346678899999999998665321 12
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
.+...-++|-|. -..+...=++..|++.+..+-..- ......+++|.++..+.+++.-
T Consensus 304 ~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l----~~~~l~~~~~~l~~~L~~~~~v 361 (370)
T PF08506_consen 304 DFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL----PKEQLLQIFPLLVNHLQSSSYV 361 (370)
T ss_dssp HHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCCCcc
Confidence 222223344333 111223346667888888776543 2345678999999999988877
No 293
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=55.91 E-value=2.1e+02 Score=30.64 Aligned_cols=229 Identities=17% Similarity=0.097 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhh
Q psy12605 105 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFI 182 (845)
Q Consensus 105 i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll 182 (845)
-|...+.+|..+... . +...++..|..++.. .++......+.+|+.-.... .+.- ..++..+..-+
T Consensus 3 ~r~~~~~~L~~l~~~-~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~-----~~~~~~~~kGl 70 (339)
T PF12074_consen 3 QRVLHASMLSSLPSS-S------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELP-----KKVVDAFKKGL 70 (339)
T ss_pred HHHHHHHHHHhCCCc-c------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCC-----HHHHHHHHHHh
Confidence 345556666666542 1 222355666666654 46666677777666544211 1111 12344455555
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc----CCchhhHHHHHHHhhhChhhHHhhhhhHHHH
Q psy12605 183 KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH----HDTSVSIYLWLSIIEKNPQISKILVSKMKIL 258 (845)
Q Consensus 183 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (845)
.+... .+|+.....+...+....+..........+|.|.+.++. +-+..+.. ..
T Consensus 71 ~~kk~-~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~---------------------~~ 128 (339)
T PF12074_consen 71 KDKKP-PVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNG---------------------EL 128 (339)
T ss_pred cCCCC-cHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccc---------------------cH
Confidence 55533 488887777777776222223344556778888777743 22221100 00
Q ss_pred HHHHHHHHHhhcCChhhH----------------HHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHh
Q psy12605 259 VDTVWALSYLTDGGNDQI----------------QMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVIL 322 (845)
Q Consensus 259 ~~a~~~L~~l~~~~~~~~----------------~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~ 322 (845)
..+.-.+. +.....+.. ..+... .+..-+ .+++-....++++..+..+.......-.
T Consensus 129 ~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~----kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~ 201 (339)
T PF12074_consen 129 VGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSE----KVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDK 201 (339)
T ss_pred HHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCH----HHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhH
Confidence 11111111 111111100 001111 111111 3344455666777766654332111110
Q ss_pred cCCccchhhHhhcCC--chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh
Q psy12605 323 NCDALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378 (845)
Q Consensus 323 ~~~~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~ 378 (845)
.......++.++.+. ..++|+.|..++..+....+.. +...++..+-.++..
T Consensus 202 ~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 202 SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHh
Confidence 123456678888777 8899999999999987776653 333345555555544
No 294
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=55.15 E-value=2.5e+02 Score=28.81 Aligned_cols=215 Identities=17% Similarity=0.142 Sum_probs=116.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCC--CccH-HHHH------hc-CCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCC
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDK--NPPI-EALI------HS-GILPVLVECLERS-DRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~--~~~~-~~i~------~~-g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~ 120 (845)
.+|.+..+..-..|+.-+.+++..-. ++.. +.+. .. |..+-+..++-.. -.+.....+...|..+....
T Consensus 14 AcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~ 93 (262)
T PF14225_consen 14 ACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLP 93 (262)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCC
Confidence 67777777777888888887766421 1111 1111 12 3444444443111 12334556667777766431
Q ss_pred -------hhhHHHHHHcCChHHHHHhhCCCC----hhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC---C
Q psy12605 121 -------SAQTQEVVAAGAVPLFLRLLMSPH----SNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD---I 186 (845)
Q Consensus 121 -------~~~~~~i~~~g~i~~L~~lL~s~~----~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~---~ 186 (845)
.+.+-.+.=...+|.++.-+.+++ ......++..|..+|.... .+.+..++...... .
T Consensus 94 ~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr~ 165 (262)
T PF14225_consen 94 DDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFRD 165 (262)
T ss_pred CccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCCC
Confidence 112222222347888888888877 2445566788888873311 11233333333221 1
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH
Q psy12605 187 PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266 (845)
Q Consensus 187 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~ 266 (845)
..+....++..|++-.- | ......+..|..++.+.-+. ++..+...|.
T Consensus 166 ~~dfl~~v~~~l~~~f~---P----~~~~~~l~~Ll~lL~n~~~w-------------------------~~~~~L~iL~ 213 (262)
T PF14225_consen 166 KDDFLSQVVSYLREAFF---P----DHEFQILTFLLGLLENGPPW-------------------------LRRKTLQILK 213 (262)
T ss_pred HHHHHHHHHHHHHHHhC---c----hhHHHHHHHHHHHHhCCcHH-------------------------HHHHHHHHHH
Confidence 23444455555544321 1 12456777788888887777 6667777777
Q ss_pred HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHh
Q psy12605 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~ 311 (845)
.+-.+-+-... ...+++.++.+++.++.. ..|++.|-++.
T Consensus 214 ~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 214 VLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEIV 253 (262)
T ss_pred HHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHHH
Confidence 66544222211 355688899999976653 45555555544
No 295
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=55.02 E-value=3.1e+02 Score=29.85 Aligned_cols=217 Identities=17% Similarity=0.204 Sum_probs=123.5
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcC---CccchhhHhhcC--CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNC---DALSHFPALLTH--PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP 370 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~---~~l~~L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 370 (845)
+..+...|+++++.+..+ +.....+-+. -++...+..+.+ .+..+....+|+|+.--.+ ..++....+.
T Consensus 59 ~~~L~~qALkll~~~l~~-~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~ 132 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH-PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVE 132 (372)
T ss_pred chHHHHHHHHHHHHHHcc-HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHH
Confidence 567889999999999755 3332322222 134455555543 3456777788888763222 1244555666
Q ss_pred HHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc---CChH
Q psy12605 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG---DGPQ 447 (845)
Q Consensus 371 ~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~---~~~~ 447 (845)
.++..+..-...-.+..+..+...++.++....+.....-.+ -..+.++..+-+...+++..|...+..+.. .+..
T Consensus 133 ~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 133 RLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHH
Confidence 666666554321246678899999999998766654322211 256677777778888888877766655542 1111
Q ss_pred HHHHH---HhCCCh---------HHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 448 LRDYV---INMGVV---------PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 448 ~~~~l---~~~g~l---------~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
....+ .+.... +.|..++..... .....-+|...-+.-+.............+......+++.|+.+
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~-~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~ 290 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE-YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQV 290 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC-cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHH
Confidence 11111 111111 223444444222 33334456433222232224456677788888888899999887
Q ss_pred HHH---HH
Q psy12605 516 SIY---LW 520 (845)
Q Consensus 516 ~~~---~~ 520 (845)
... +|
T Consensus 291 k~~A~~aW 298 (372)
T PF12231_consen 291 KIQAFKAW 298 (372)
T ss_pred HHHHHHHH
Confidence 644 67
No 296
>KOG2213|consensus
Probab=54.56 E-value=3.1e+02 Score=29.60 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
++.++ .+...+ ......|.+.+-+...+.++ ..+. .+..=+.+. .+++..+|++|..-|-.+|.+
T Consensus 27 y~~il-~~~k~~-~k~k~lasq~ip~~fk~fp~-la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 27 YEGIL-KAVKGT-SKEKRLASQFIPRFFKHFPS-LADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHH-HHhhcc-hHHHHHHHHHHHHHHhhCch-hhhH-----HHHhhhccc-cccchhhHHHHHhccchhccC
Confidence 44444 344433 33444455555555554432 1222 244445555 345567777777777777765
No 297
>KOG0891|consensus
Probab=52.56 E-value=2.4e+02 Score=38.45 Aligned_cols=160 Identities=12% Similarity=0.137 Sum_probs=88.2
Q ss_pred HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 278 MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 278 ~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
...+.+.+..+...+.++.-.++..+...+++++..++...-..+..-.+..+-.+..+.-..+...+..-+..+....+
T Consensus 560 ~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 34455666667777788888899999999999988766322211111122222222222222223333222222222222
Q ss_pred HHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHH
Q psy12605 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVW 436 (845)
Q Consensus 358 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~ 436 (845)
..+...+ ...+..++..+.+. ++.+...+..++..|+.-..+......+ ..++.+.+.+. .++..-+..+.+
T Consensus 640 ~~i~~~v-~~~l~~~~~~~~~~-----~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk 712 (2341)
T KOG0891|consen 640 VLISPYV-GPILLVLLPKLQDP-----SSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALK 712 (2341)
T ss_pred HHHHhhc-CchHHHHHHHHhcc-----chhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHH
Confidence 2222222 23345555555553 5577777888888887644433333344 45555666555 355667789999
Q ss_pred HHHHhhcC
Q psy12605 437 ALGNIIGD 444 (845)
Q Consensus 437 ~L~nl~~~ 444 (845)
+++++.+.
T Consensus 713 ~l~~l~s~ 720 (2341)
T KOG0891|consen 713 ALGQLESS 720 (2341)
T ss_pred Hhhhhhcc
Confidence 99999864
No 298
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=52.44 E-value=98 Score=33.25 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=55.7
Q ss_pred HhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC--C
Q psy12605 85 IHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD--G 162 (845)
Q Consensus 85 ~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~--~ 162 (845)
+...++..|+.++..+.+.......+.+|..-+..- ..-+...++..+.+-+++..+.+|..-+..++.+... +
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334568888888877777777777777776655321 1111234566777777777777999888888887641 1
Q ss_pred hhhHHHHHhcCChhhHHhhh
Q psy12605 163 PQLRDYVINMGVVPPLLSFI 182 (845)
Q Consensus 163 ~~~r~~i~~~g~i~~Lv~ll 182 (845)
.+....+ ...++.|++.+
T Consensus 95 ~~~~~~~--~~~~~~L~~~~ 112 (339)
T PF12074_consen 95 SDSLKFA--EPFLPKLLQSL 112 (339)
T ss_pred chHHHHH--HHHHHHHHHHH
Confidence 1111111 13566666666
No 299
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=52.30 E-value=2.3e+02 Score=27.40 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=89.2
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
.++.++++..+.+..++..|+.++.-+....-.+ -...+|.|+.+..+ .++.++..|...+..+....+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-----P~~cvp~lIAL~ts-----~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVN-----PKQCVPTLIALETS-----PNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-----hHHHHhHhhhhhCC-----CChHHHHHHHHHHHHHHHHhHH
Confidence 5677888888899999999988888764321100 02257888888777 4899999999999999876655
Q ss_pred hHHHHHHcCChHHH---HHhhCCCCH-HH---HHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC-------Ch
Q psy12605 406 QTQEVVAAGAVPLF---LRLLMSPHS-NV---CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-------PI 471 (845)
Q Consensus 406 ~~~~l~~~g~i~~L---v~lL~~~~~-~v---~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~-------~~ 471 (845)
....-...| +..- ...+..+.. .. .......+..+...+...|..+ +..|++.+.... ..
T Consensus 79 ~v~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~ 152 (187)
T PF12830_consen 79 LVESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSP 152 (187)
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccch
Confidence 433322223 2222 222222211 11 4555666667777666666665 556666665332 23
Q ss_pred hHHHHHHHHHHHhhcCC
Q psy12605 472 SFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 472 ~~~~~~~~~l~nL~~~~ 488 (845)
.-.....++.-||+.-+
T Consensus 153 ~~l~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 153 SDLDFLLFLAENLATLP 169 (187)
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 44555666666666543
No 300
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=51.08 E-value=2.9e+02 Score=28.96 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=57.4
Q ss_pred CCCCccchhHHHHHHHhhcccCCH-HHHHHHHHcCCchHHhhhhcc-c--cHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy12605 705 PQGEFQTQKEAAWAISNLTISGNR-DQVAKLVQEGVIPPFCDLLSC-K--DAQVIQVVLDGINNMLKMADAQVETLANMI 780 (845)
Q Consensus 705 ~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~l~~~~~i~~L~~~L~~-~--d~~~~~~al~~L~~l~~~~~~~~~~~~~~~ 780 (845)
+..+.-.|.-.+.++-.+..++++ .....+.+.|.++.+++.+-+ . +.++.....+.|..|++.....+..+-..+
T Consensus 107 e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f~~l~~~l 186 (303)
T PF12463_consen 107 EPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAFQRLNKYL 186 (303)
T ss_pred CCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 455566788888888888877777 455567799999999986554 3 457999999999999998776655544444
Q ss_pred H
Q psy12605 781 E 781 (845)
Q Consensus 781 ~ 781 (845)
.
T Consensus 187 ~ 187 (303)
T PF12463_consen 187 N 187 (303)
T ss_pred c
Confidence 4
No 301
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=50.92 E-value=1.6e+02 Score=30.74 Aligned_cols=138 Identities=13% Similarity=0.184 Sum_probs=78.2
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH-HHHHHcCChHHHHHh----hC--------CCChhHHHHHHHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT-QEVVAAGAVPLFLRL----LM--------SPHSNVCEQAVWAL 155 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~-~~i~~~g~i~~L~~l----L~--------s~~~~v~~~a~~~L 155 (845)
++|.++.++. +.++.+|..++.+|..+....+... ..+...|..+.+-+. |. ..+..+-..+.-+|
T Consensus 120 iiP~iL~llD-D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLD-DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhc-CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 5999999994 5688999999999999987543332 235666765554443 33 23456777777788
Q ss_pred HHhcC-----CChh---hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc
Q psy12605 156 GNIIG-----DGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227 (845)
Q Consensus 156 ~nla~-----~~~~---~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 227 (845)
..++. ++.. ....++..|++..+...-+. ....++...+..+..+...-+ ..........++.+.+.+.+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~-~~~~l~~~ll~~l~~~i~~lG-i~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSF-SYPRLRTVLLQQLPPIIDELG-ISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceecccc-CchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcC
Confidence 87742 1111 12222223333332222221 124666666666666655431 12233455677777776665
Q ss_pred CC
Q psy12605 228 HD 229 (845)
Q Consensus 228 ~~ 229 (845)
++
T Consensus 277 pf 278 (282)
T PF10521_consen 277 PF 278 (282)
T ss_pred CC
Confidence 43
No 302
>KOG1822|consensus
Probab=49.95 E-value=4.1e+02 Score=34.95 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=66.7
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..+.-++ .-+..++|..+..+..++.++....+..+.-. +....++.-|++..++-.|..-.-+|+.+-+.....
T Consensus 876 ~~~~l~~-~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a----~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~ 950 (2067)
T KOG1822|consen 876 SALTLIV-NSLINPNPKLRCAAAEALARLAQVVGSAPFVA----SLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI 950 (2067)
T ss_pred HHHHHHh-hhhccCChHHHHHHHHHHHHHHHhccccchHH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence 3344445 67788899999999999998877554333221 235555556655555544443333333332211111
Q ss_pred HHHHHHcCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCh
Q psy12605 124 TQEVVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGP 163 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~ 163 (845)
...-.-..++..+..+-.++ ++.++..++.++.-+...+-
T Consensus 951 ~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~ 991 (2067)
T KOG1822|consen 951 GSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSG 991 (2067)
T ss_pred CCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCC
Confidence 11111123566777777666 45999999999999886543
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=49.92 E-value=63 Score=28.24 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=49.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHh-----hccCCChhHHHHHHHHHHHHh
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVEC-----LERSDRPNLQFEAAWALTNIA 117 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~l-----L~~~~~~~i~~~a~~~L~~la 117 (845)
..++..|.+.++..++.|+..|..++.+........+.....+..++.. .....+..+|..+...+..++
T Consensus 40 ~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 40 DAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 3444678889999999999999999988876666666666666555543 111235678888877776654
No 304
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=48.85 E-value=3.1e+02 Score=27.91 Aligned_cols=89 Identities=21% Similarity=0.304 Sum_probs=56.9
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCCh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGP 163 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~ 163 (845)
+....|.++.+++.++.+- -..++.....+-...-+.+..|-++.|.+++.++ +.-+|..|+.+|..++...+
T Consensus 71 e~~A~~~li~l~~~~~~~~-----~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDFL-----EDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhHHHHHHHHcCCcchH-----HHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3457999999996544311 1222232211111122233457788889999887 45689999999999999999
Q ss_pred hhHHHHHhcCChhhHHhh
Q psy12605 164 QLRDYVINMGVVPPLLSF 181 (845)
Q Consensus 164 ~~r~~i~~~g~i~~Lv~l 181 (845)
.-|+.+++. +..++..
T Consensus 146 ~~Re~vi~~--f~~ll~~ 161 (249)
T PF06685_consen 146 ISREEVIQY--FRELLNY 161 (249)
T ss_pred CCHHHHHHH--HHHHHHH
Confidence 888888753 4444443
No 305
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=47.59 E-value=84 Score=27.45 Aligned_cols=70 Identities=7% Similarity=0.119 Sum_probs=48.4
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhh-----h-cCCCHHHHHHHHHHHHHh
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEML-----Q-NHENVEIYKLAYDIIERY 811 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l-----~-~~~~~~v~~~a~~~l~~~ 811 (845)
++..|..=|.+.++.++..||..|..|++.++..+ ...+........+..+ . ...+..|++++..+++..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f---~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF---HQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH---HHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 44555566677899999999999999999887654 3334444444444322 1 123678999999998764
No 306
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=46.68 E-value=1.6e+02 Score=28.32 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=52.5
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhc
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLL 292 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL 292 (845)
....+|.++.-+...+.. -..-|......|... ..+.+-.+ =..++.++-..|
T Consensus 36 y~~~Lpif~dGL~Et~~P-------------------------y~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL 89 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHP-------------------------YRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRAL 89 (183)
T ss_pred hhhHHHHHHhhhhccCcc-------------------------HHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHH
Confidence 568899999888876555 333344444444333 33322222 235677777888
Q ss_pred cCCchhhHHHHHHHHHHHhcCChhhHHH
Q psy12605 293 SHKEVKVQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 293 ~~~~~~v~~~al~~L~nl~~~~~~~~~~ 320 (845)
.+.++++...++.+|..++..++..-.+
T Consensus 90 ~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 90 NTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 9999999999999999997665544333
No 307
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=46.50 E-value=4.2e+02 Score=28.85 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=75.2
Q ss_pred ChhHHHHHHHHHHHhcCCChhhHHHHHhcC---ChhhHHhhh-cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHH
Q psy12605 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMG---VVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLP 219 (845)
Q Consensus 144 ~~~v~~~a~~~L~nla~~~~~~r~~i~~~g---~i~~Lv~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 219 (845)
+.++..+|+++|+.+-.+ ++....+-+.- .+...+..+ ....+..+....+|+|+.---+... .........+.
T Consensus 59 ~~~L~~qALkll~~~l~~-~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~-~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH-PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKI-MTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHcc-HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHH
Confidence 668899999999999844 44433332221 344455555 4455778888899998863222211 01111122222
Q ss_pred HHHhhcc-cCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC-chhhHHhhccCCch
Q psy12605 220 ALNILIH-HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG-VVPSLIPLLSHKEV 297 (845)
Q Consensus 220 ~L~~ll~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv~lL~~~~~ 297 (845)
.+..+-+ -+... +....+.++..+....+.. +....+ .++.++..+-+...
T Consensus 137 ~l~~i~~~~~s~s-------------------------i~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k 189 (372)
T PF12231_consen 137 ALHNIKNRFPSKS-------------------------IISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAK 189 (372)
T ss_pred HHHHhhccCCchh-------------------------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcch
Confidence 2222222 12222 5566666676666554432 222233 66777777766666
Q ss_pred hhHHHHHHHHHHHh
Q psy12605 298 KVQTASLRAVGNIV 311 (845)
Q Consensus 298 ~v~~~al~~L~nl~ 311 (845)
.++..|..++-.+.
T Consensus 190 ~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 190 DIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776665555443
No 308
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=46.23 E-value=2.6e+02 Score=26.88 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSS-DKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
++-++ +.+...+..-+..|...+..++.. ..+ +-.-+--.+|+.|..-| .+.++++...++.+|..++..
T Consensus 40 Lpif~-dGL~Et~~Py~flA~~g~~dll~~~~~~--kilPvlPqLI~plk~AL-~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 40 LPIFF-DGLRETEHPYRFLARQGIKDLLERGGGE--KILPVLPQLIIPLKRAL-NTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHH-hhhhccCccHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHh
Confidence 44555 778888888888999999999887 322 21112245677777778 467899999999999999654
No 309
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=45.39 E-value=3.7e+02 Score=31.96 Aligned_cols=157 Identities=13% Similarity=0.182 Sum_probs=88.9
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
-+..|+.+|.+.+..+.+++-..+........+. -++..||.+.-..+ + ..+..+|..+- .+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l~~y~~~t~----s----~~~~~il~~~~--~P~ 67 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP-------WLVNGLVDYYLSTN----S----QRALEILVGVQ--EPH 67 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH-------HHHHHHHHHHhhcC----c----HHHHHHHHhcC--Ccc
Confidence 3456777888887777776666665543332211 12334444433321 1 12222222221 110
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
. ......|-..+. .+.-|..++..|+.+....+.....+.+...+..|+++|..+.+..+.-.++.+|.-|.
T Consensus 68 -~-----K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 68 -D-----KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred -H-----HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 0 011222333333 45788999999999999888888889999999999999998887666666666655544
Q ss_pred cCCCCCCChhHHHhHHHHHHHhh
Q psy12605 486 RNKDPPPSMSTIIELLPALNILI 508 (845)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~l~~ll 508 (845)
-.. |..--..+.+.+..+.+++
T Consensus 140 P~i-p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 140 PHI-PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccc-cchhhHHHHHHHHHHHHHH
Confidence 222 1112234445555555555
No 310
>KOG0891|consensus
Probab=45.33 E-value=2e+02 Score=39.03 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=69.8
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
.+..++..+.+++..+...++.+++.|+.-.........+ ..++.+.+.+.+ .+..-+..+.+++.++.....-....
T Consensus 649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p 727 (2341)
T KOG0891|consen 649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDP 727 (2341)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecc
Confidence 3456666777788888889999999998654432222333 344555555533 45566788889999986653322221
Q ss_pred HH-hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 363 VI-DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 363 l~-~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.. ...++..++..+... ....++.++...++++...+
T Consensus 728 ~~~~P~ll~~l~~~~~te----~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 728 YLDYPELLDILINILKTE----QSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred cccChHHHHHHHHHHhHh----hhhHHHHHHHHHhhhhcccc
Confidence 11 234555666666554 35667777777777654433
No 311
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.10 E-value=24 Score=22.12 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC
Q psy12605 104 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 142 (845)
Q Consensus 104 ~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s 142 (845)
.+|..|+++|+++.. ++ +++.|++.|++
T Consensus 2 ~vR~~aa~aLg~~~~--~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD--EE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC--Hh---------HHHHHHHHhcC
Confidence 578999999999853 32 66777777654
No 312
>PRK09169 hypothetical protein; Validated
Probab=44.26 E-value=1e+03 Score=32.53 Aligned_cols=41 Identities=12% Similarity=0.077 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHH
Q psy12605 726 GNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766 (845)
Q Consensus 726 ~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~ 766 (845)
.+++....|-..++-..|-.+-++.+...+..+...|...+
T Consensus 740 ~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~l 780 (2316)
T PRK09169 740 ADADLRQAMNPQGLANSLNALSKWPQEPACQQAALLLAERL 780 (2316)
T ss_pred cChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 34444444433344444444445555555555555555554
No 313
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.77 E-value=1.3e+02 Score=25.48 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=47.3
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHH
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a 345 (845)
....+..|+.++..++......++..+..+... +...+.+.+-|+...+.++-..-++..+...
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~i 91 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEI 91 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHH
Confidence 446778899999988888999999999998766 4455667777888776666655555554433
No 314
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=43.03 E-value=2.7e+02 Score=25.52 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=48.5
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh-HHHHHHcCChHH-HHHhhCC---CChhHHHHHHHHHHHhc
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ-TQEVVAAGAVPL-FLRLLMS---PHSNVCEQAVWALGNII 159 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~-~~~i~~~g~i~~-L~~lL~s---~~~~v~~~a~~~L~nla 159 (845)
+..|-+-|..+.++.++..|+..|-.+.+.+... -..+...+.+.. |++++.. .+..++..++..+...+
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 5555665643457788888888888877654433 345666778886 8999863 24578888888887776
No 315
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=42.67 E-value=3.6e+02 Score=28.36 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=62.8
Q ss_pred cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH--hHHHHHHcCChHHHHHhhCCCC---HHHHHHHHHHHHH
Q psy12605 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--QTQEVVAAGAVPLFLRLLMSPH---SNVCEQAVWALGN 440 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~~g~i~~Lv~lL~~~~---~~v~~~a~~~L~n 440 (845)
.|.+..+++.+...+ .+...+...+.|+-.+.++.+. .+..+.+.|.++.++.-+-++. ..+.....-.||.
T Consensus 94 ~gLl~kIi~~l~~e~---~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGE 170 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEP---IDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGE 170 (303)
T ss_pred ccHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 567888888888764 4677889999999999987765 4557788899999998887553 4688888899999
Q ss_pred hhcCChH
Q psy12605 441 IIGDGPQ 447 (845)
Q Consensus 441 l~~~~~~ 447 (845)
+...+..
T Consensus 171 LiK~n~~ 177 (303)
T PF12463_consen 171 LIKFNRD 177 (303)
T ss_pred HHCCCHH
Confidence 9887754
No 316
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=42.50 E-value=51 Score=32.50 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHhcCCHHHHHHhhccCC--C---------------hhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChh
Q psy12605 84 LIHSGILPVLVECLERSD--R---------------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~--~---------------~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~ 146 (845)
+.+.|++..++.+|+..- . +++...+...|..++.++.++...+.+ -++.++..+......
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~~~ 116 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQIG 116 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCCH-
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhhcc
Confidence 445677777777764321 1 357788999999999999888888876 344444443332212
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 147 v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.-..+..+|..+-.++++....+.+.- |..+++++.... ....-+..|..+|...
T Consensus 117 ~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~g---r~~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 117 YGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHG---RQPRYLDFLSSLCVCN 171 (207)
T ss_dssp TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred CCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcC---CChHHHHHHhhhcccC
Confidence 223567778888888877777766554 888888887632 2223455566666543
No 317
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=42.08 E-value=2.5e+02 Score=29.23 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=47.6
Q ss_pred ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH-HHHHHcCChHHHHH----hhC--------CCCHHHHHHH
Q psy12605 368 LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT-QEVVAAGAVPLFLR----LLM--------SPHSNVCEQA 434 (845)
Q Consensus 368 ~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~g~i~~Lv~----lL~--------~~~~~v~~~a 434 (845)
++|.++.++++. ++.+|..++.+|..+....+... ..+...|..+.+.+ .+. .+...+...+
T Consensus 120 iiP~iL~llDD~-----~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 120 IIPPILNLLDDY-----SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HHhhHHHHhcCC-----CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 688999999885 89999999999999987554333 34666676655443 333 2334566666
Q ss_pred HHHHHHhh
Q psy12605 435 VWALGNII 442 (845)
Q Consensus 435 ~~~L~nl~ 442 (845)
.-+|..+.
T Consensus 195 y~~L~~L~ 202 (282)
T PF10521_consen 195 YPALLSLL 202 (282)
T ss_pred HHHHHHHH
Confidence 66666663
No 318
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=41.64 E-value=3.2e+02 Score=30.61 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhcCCChh-hHHHHHhcCChh-hHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHh
Q psy12605 146 NVCEQAVWALGNIIGDGPQ-LRDYVINMGVVP-PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 223 (845)
Q Consensus 146 ~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~-~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 223 (845)
..|..|+.+||.++..-+. ....+ .. .|+..|++... .-|..+.-++.+.+................+.|..
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~-----~~~~L~~~L~S~sa-~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEI-----FQPLLLPYLNSPSA-TQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHH-----HHHHHHHHhcchhH-HHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4578899999998865322 11121 22 57778877632 34445677778888765332222113445556666
Q ss_pred hcccC
Q psy12605 224 LIHHH 228 (845)
Q Consensus 224 ll~~~ 228 (845)
.+..+
T Consensus 176 ~L~~~ 180 (441)
T PF12054_consen 176 ILENP 180 (441)
T ss_pred HHcCC
Confidence 66644
No 319
>KOG2676|consensus
Probab=41.29 E-value=27 Score=36.46 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHcCChHHHHHhh--CCCChhHHHHHHHHHHHhcCCChhhHHHHHhc
Q psy12605 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172 (845)
Q Consensus 109 a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~ 172 (845)
....++++|..+++..+.+.+-||++.++.-. ++.+|-+++..+.|+.++-.++.++++.+.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 45678899998899999999999999998864 56689999999999999999998888877654
No 320
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=40.71 E-value=2.9e+02 Score=25.28 Aligned_cols=76 Identities=9% Similarity=0.137 Sum_probs=54.4
Q ss_pred CchHHhhhhc-cccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHH-HHhhhcC---CCHHHHHHHHHHHHHhcC
Q psy12605 739 VIPPFCDLLS-CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDK-IEMLQNH---ENVEIYKLAYDIIERYFS 813 (845)
Q Consensus 739 ~i~~L~~~L~-~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~-L~~l~~~---~~~~v~~~a~~~l~~~~~ 813 (845)
++..|-+=|. ..++.++..||..|..+++-++..+ ...+...++.+. |..+... ....|++++..+++....
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~f---h~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRF---HVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHH---HHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 4444444444 4689999999999999999887664 344566677776 7777653 235799999999998865
Q ss_pred cccC
Q psy12605 814 EVED 817 (845)
Q Consensus 814 ~~~~ 817 (845)
.-.+
T Consensus 116 ~f~~ 119 (141)
T cd03565 116 AFRG 119 (141)
T ss_pred HhCC
Confidence 5433
No 321
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=40.35 E-value=87 Score=25.82 Aligned_cols=66 Identities=6% Similarity=0.068 Sum_probs=46.8
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC----CCChhHHHHHHHHHH
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM----SPHSNVCEQAVWALG 156 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~----s~~~~v~~~a~~~L~ 156 (845)
+..++.++..++....+.++|...+.++..+... +...+. .|++.+...+. ++++++...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~---~~~~i~--SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQS---RGENIK--SGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH---hHHHHH--hccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3446888888876667889999999999999854 333343 36888888775 346677777766654
No 322
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=40.32 E-value=1.1e+02 Score=25.17 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=45.3
Q ss_pred HHcCCchHHhhhhcc-ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHH----hhhcCCCHHHHHHHHHHHH
Q psy12605 735 VQEGVIPPFCDLLSC-KDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIE----MLQNHENVEIYKLAYDIIE 809 (845)
Q Consensus 735 ~~~~~i~~L~~~L~~-~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~----~l~~~~~~~v~~~a~~~l~ 809 (845)
.+..++.|+..++.. .+.++++..++|+..++...... + ..| ++.+- .-..++++.+...|-+.++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~-------i-~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN-------I-KSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH-------H-Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 355788899888654 68899999999999999754332 2 233 33333 2234456778888877765
Q ss_pred H
Q psy12605 810 R 810 (845)
Q Consensus 810 ~ 810 (845)
.
T Consensus 85 ~ 85 (86)
T PF09324_consen 85 L 85 (86)
T ss_pred h
Confidence 3
No 323
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.23 E-value=2.4e+02 Score=23.96 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=47.0
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHH
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA 154 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~ 154 (845)
..+++..|++-++..+. ..+..++..|..+... +.....+.+-|++..|-++=...++..+...-..
T Consensus 28 ~~~Ll~~LleWFnf~~~-~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPV-PMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44667777777754444 4688888999998875 6677778889999997777655566555544333
No 324
>KOG1949|consensus
Probab=38.57 E-value=5.3e+02 Score=30.22 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=101.9
Q ss_pred HHHcCChHHHHHhh-CCCChhHHHHHHHHHHHhcCCChhhHHH---HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 127 VVAAGAVPLFLRLL-MSPHSNVCEQAVWALGNIIGDGPQLRDY---VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 127 i~~~g~i~~L~~lL-~s~~~~v~~~a~~~L~nla~~~~~~r~~---i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
-++.|.++.++..- -.+...+....-.+|+... +....++- +.-.=.=|.+.+-|+-. +..+|.+|+..+.++.
T Consensus 125 eiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~-hqkk~~qgVeeml~rL~~p~l~R~L~a~-Ns~VrsnAa~lf~~~f 202 (1005)
T KOG1949|consen 125 EIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFH-HQKKVRQGVEEMLYRLYKPILWRGLKAR-NSEVRSNAALLFVEAF 202 (1005)
T ss_pred HHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhHHHHHhhccC-chhhhhhHHHHHHHhc
Confidence 34567777766642 2233233333334454443 11111111 11000122333445444 3378999999999987
Q ss_pred cCCCCCCChhHH----hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 203 RNKDPPPSMSTI----IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 203 ~~~~~~~~~~~~----~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
--.++....... ..-...+..+++++-+. ++..|..-+..+... .-.
T Consensus 203 P~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~-------------------------VRS~a~~gv~k~~s~----fWe 253 (1005)
T KOG1949|consen 203 PIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPM-------------------------VRSTAILGVCKITSK----FWE 253 (1005)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhcCCCch-------------------------HHHHHHHHHHHHHHH----HHH
Confidence 655544432223 33445567777777777 555555444433211 011
Q ss_pred HHhcCch----hhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 279 VIDSGVV----PSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 279 ~~~~g~i----~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
++-..++ ..+..-+ .++..+|+.+..+.|-.+...... -.+.+ -++|.+-..|.+..+.+|.++...|..+-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 1111222 2222222 345568999999988888654221 11122 25566666777888999999999888873
Q ss_pred c
Q psy12605 354 A 354 (845)
Q Consensus 354 ~ 354 (845)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 3
No 325
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.13 E-value=34 Score=31.27 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHH
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAV 307 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L 307 (845)
+...++.++......-+ ...+.+.+.++.+.++|. ++.++..|+.||
T Consensus 102 ~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 102 LVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 67778888877665332 356667789999999994 444688888876
No 326
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.74 E-value=5.6e+02 Score=28.99 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=87.1
Q ss_pred HHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCcc----H-HHHHhcCCHHHHHHhhccCCChhHHHHHHHHHH
Q psy12605 40 KMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP----I-EALIHSGILPVLVECLERSDRPNLQFEAAWALT 114 (845)
Q Consensus 40 ~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~----~-~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~ 114 (845)
.+...+++-+| +.++++|++.+..++..|.....+....- . -.+.. .--+.|++...+-..+..+..-+.+|.
T Consensus 43 ~~lk~dLellV-eriqd~d~~l~~~sLn~LkeviksStSsmtavpkplkfLr-p~y~dl~~iydkw~~~n~K~~LaDilS 120 (881)
T COG5110 43 AMLKGDLELLV-ERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLR-PNYLDLLEIYDKWLEGNKKRWLADILS 120 (881)
T ss_pred hhhcccHHHHH-HHhhCCChHHHHHHHHHHHHHHhccccccccCCchhhhcC-CCcchHHHHHhhccCcchhhHHHHHHH
Confidence 34566788888 99999999999999999998866543210 0 01111 112233444322223455677778888
Q ss_pred HHhcCChhh---HHH-HH-----------HcCChHHHHHhhC----------CC-ChhHHHHHHHHHHHhcCCChh--hH
Q psy12605 115 NIASGTSAQ---TQE-VV-----------AAGAVPLFLRLLM----------SP-HSNVCEQAVWALGNIIGDGPQ--LR 166 (845)
Q Consensus 115 ~la~~~~~~---~~~-i~-----------~~g~i~~L~~lL~----------s~-~~~v~~~a~~~L~nla~~~~~--~r 166 (845)
.+|....++ ... .. .+..|..|...+. .+ ..+.++-++.++-.+-.++.+ .-
T Consensus 121 ~l~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAi 200 (881)
T COG5110 121 ALCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAI 200 (881)
T ss_pred HHeeecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHH
Confidence 888644442 111 11 1112333333321 12 246777888887777666643 56
Q ss_pred HHHHhcCChhhHHhhhcCCCC
Q psy12605 167 DYVINMGVVPPLLSFIKPDIP 187 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~ 187 (845)
+.+.+-|+|+.++.+...++-
T Consensus 201 DlL~Evg~Iekv~~fVd~~n~ 221 (881)
T COG5110 201 DLLVEVGGIEKVLDFVDTHNY 221 (881)
T ss_pred HHHHHhcchhhhhhhhcccch
Confidence 678899999999999876643
No 327
>KOG1848|consensus
Probab=37.59 E-value=5.7e+02 Score=32.58 Aligned_cols=111 Identities=15% Similarity=0.097 Sum_probs=52.9
Q ss_pred HhhcCCchhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccc-c---CChhHH----HHHHHHHHHHhcC
Q psy12605 332 ALLTHPKEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRI-V---LRPNLQ----FEAAWALTNIASG 402 (845)
Q Consensus 332 ~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~-~---~~~~v~----~~a~~~L~~l~~~ 402 (845)
++..+...++|..|+.++..+... ...........=+...++.+|...... . ...+++ .-.+.++.-|+.-
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 333455677888888887776432 111112122222233344444421100 0 112221 2244555555554
Q ss_pred ChHhHHHHHHcCC--------hHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 403 TSAQTQEVVAAGA--------VPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 403 ~~~~~~~l~~~g~--------i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
-+++.+.+....+ +..+-++..+.++++...++.++..+.
T Consensus 1084 f~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1084 FSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 4455554444322 223444455778888888887776654
No 328
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=36.54 E-value=7e+02 Score=28.50 Aligned_cols=113 Identities=16% Similarity=0.021 Sum_probs=68.2
Q ss_pred hhhHhhcCC--chhhHHHHHHHH---HHhhcCChH-HHH---HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 329 HFPALLTHP--KEKICKEAVWFL---SNITAGNQA-QVQ---AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 329 ~L~~lL~~~--~~~~~~~a~~~L---~nl~~~~~~-~~~---~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
.+...+.+. +..+|..+...+ .....+... ..+ ..+..++.|.+ +.-........+...|..+-.+++.+
T Consensus 323 i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR~~aYe~lG~L 401 (501)
T PF13001_consen 323 IVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELRSLAYETLGLL 401 (501)
T ss_pred HHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHHHHHHHHHHHH
Confidence 333344444 556777776666 444443332 222 22334444444 11011111225678899999999999
Q ss_pred hcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 400 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 400 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
+...+.... -+-+.+..|..-|.++.++++...-.||..++..
T Consensus 402 ~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 402 AKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 987765421 1245677788888889999999888888888753
No 329
>KOG1848|consensus
Probab=35.95 E-value=4.1e+02 Score=33.77 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=14.4
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHHh
Q psy12605 787 DKIEMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 787 ~~L~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
+.+..+..+.+.++.--|..-++..
T Consensus 1106 ~flkrl~s~~s~e~slsai~~~qel 1130 (1610)
T KOG1848|consen 1106 QFLKRLHSDISPEISLSAIKALQEL 1130 (1610)
T ss_pred HHHHHHHhcCChHhHHHHHHHHHHH
Confidence 3444556666777666665555543
No 330
>KOG1993|consensus
Probab=35.75 E-value=8.4e+02 Score=29.19 Aligned_cols=280 Identities=12% Similarity=0.148 Sum_probs=140.6
Q ss_pred cHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCCccHHHHH--hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 45 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALI--HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 45 ~i~~lv~~~l~~~-~~~~~~~a~~~l~~ll~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
-...++ +.+++. |..+++.++++++-.+.-.+ -..+.+. -......+.++++.-..-+.|...+..|+.+-....
T Consensus 527 ~Y~a~l-nLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~ 604 (978)
T KOG1993|consen 527 LYCAFL-NLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVS 604 (978)
T ss_pred HHHHHH-HhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 344556 677776 78889999999988776321 0111111 144566666777544445667777777777764434
Q ss_pred hhHHHHHHcCChHHHHHhhC---CCChhHHHHHHHHHHHhcC----CChhhHHHHHhcCChhhHHhhhc---CCCCHHHH
Q psy12605 122 AQTQEVVAAGAVPLFLRLLM---SPHSNVCEQAVWALGNIIG----DGPQLRDYVINMGVVPPLLSFIK---PDIPISFL 191 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~---s~~~~v~~~a~~~L~nla~----~~~~~r~~i~~~g~i~~Lv~ll~---~~~~~~~~ 191 (845)
++..... +-+-.++.+|- ++.+-++.+.+.+|.++.. .++..... +-+++.+-. ++...-+.
T Consensus 605 e~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~f------L~pVIel~~D~~sP~hv~L~ 676 (978)
T KOG1993|consen 605 EHIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPF------LYPVIELSTDPSSPEHVYLL 676 (978)
T ss_pred HhhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHH------HHHHHHHhcCCCCCceeehh
Confidence 4433211 22333333332 2344567777777777642 12222211 112222221 11121122
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH-Hhhc
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS-YLTD 270 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~-~l~~ 270 (845)
+-+...=.....+. +.-....-+.+|.+...+...... ...++..+. |+--
T Consensus 677 EDgmeLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste~--------------------------L~t~l~Ii~sYilL 728 (978)
T KOG1993|consen 677 EDGMELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTEN--------------------------LPTVLMIISSYILL 728 (978)
T ss_pred hhHHHHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhhh--------------------------HHHHHHHHHHHHhh
Confidence 21111111111111 111123345566666555543322 111222221 1111
Q ss_pred CChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh--cCCchhhHHHHHHH
Q psy12605 271 GGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL--THPKEKICKEAVWF 348 (845)
Q Consensus 271 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL--~~~~~~~~~~a~~~ 348 (845)
.+...... ...|+++.+..++.+-..+-..+.++++..+...++ .-......++++.+..-. +.+.+-+-..-+.+
T Consensus 729 d~~~fl~~-y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~v 806 (978)
T KOG1993|consen 729 DNTVFLND-YAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLV 806 (978)
T ss_pred ccHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHH
Confidence 12222222 244788888888877777777788888888876654 333344556666666554 34556666666677
Q ss_pred HHHhhcCChHHHHHHH
Q psy12605 349 LSNITAGNQAQVQAVI 364 (845)
Q Consensus 349 L~nl~~~~~~~~~~l~ 364 (845)
++.+...+++....+.
T Consensus 807 vaRi~l~n~~~~msvl 822 (978)
T KOG1993|consen 807 VARISLRNPSLFMSVL 822 (978)
T ss_pred HHHHHhcChHHHHHHH
Confidence 7777666666555444
No 331
>KOG1822|consensus
Probab=35.09 E-value=1.2e+03 Score=30.98 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=65.2
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
....++..|..+++..+-.+..+++.++..-+... .-.+..+.+++-+.+..+.-.|..-.-++..+-++....-..
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~---f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAP---FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 45566667777888888888888888875432111 111123444455555444334444455555566655433333
Q ss_pred hHHhhHHHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhH
Q psy12605 212 STIIELLPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQI 276 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 276 (845)
.....++..+..+..+ .+|. ++..++.++..+.+......
T Consensus 954 qhl~t~v~illal~~Ds~~p~-------------------------VqtwSL~al~~i~~s~~p~~ 994 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPV-------------------------VQTWSLHALALILDSSGPMF 994 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCch-------------------------hhhhHHHHHHHHHcCCCcee
Confidence 3444555566555554 4446 66777777777766544333
No 332
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.21 E-value=70 Score=36.05 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCCccchhHHHHHHHhhcccC------------CHHHHHHHHHcCCchHHhh-hhccccHHHHHHHHHHHHHHHHhh
Q psy12605 705 PQGEFQTQKEAAWAISNLTISG------------NRDQVAKLVQEGVIPPFCD-LLSCKDAQVIQVVLDGINNMLKMA 769 (845)
Q Consensus 705 ~~~~~~~~~~a~~~l~~l~~~~------------~~~~~~~l~~~~~i~~L~~-~L~~~d~~~~~~al~~L~~l~~~~ 769 (845)
.+.+++++..|+.+|+.+..-+ ..+-+..|.....+..|++ +|..........++.++..+++..
T Consensus 73 p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 73 PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 4455566777776666664211 1344566666677777776 443233556667777777777664
No 333
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=34.18 E-value=2.5e+02 Score=28.12 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=54.2
Q ss_pred hHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc-cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChH-HHHH
Q psy12605 713 KEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK-DAQVIQVVLDGINNMLKMADAQVETLANMIEECGGL-DKIE 790 (845)
Q Consensus 713 ~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~-d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~-~~L~ 790 (845)
..=...++.++ ++++-...|-+.+++..+..+.+.. .++++...+..| +.. -.|-. ..|.
T Consensus 141 ~~Yf~~IG~lS--~~~~Gl~lLe~~~if~~l~~i~~~~~~~~l~klil~~L-------DY~---------~~~~~R~iLs 202 (226)
T PF14666_consen 141 RGYFLFIGVLS--STPNGLKLLERWNIFTMLYHIFSLSSRDDLLKLILSSL-------DYS---------VDGHPRIILS 202 (226)
T ss_pred HHHHHHHHHHh--CChhHHHHHHHCCHHHHHHHHHccCchHHHHHHHHhhC-------CCC---------CccHHHHHHH
Confidence 34455667775 6777788888889999999998874 344544444433 111 01111 3455
Q ss_pred hhhcCCCHHHHHHHHHHHHHhcC
Q psy12605 791 MLQNHENVEIYKLAYDIIERYFS 813 (845)
Q Consensus 791 ~l~~~~~~~v~~~a~~~l~~~~~ 813 (845)
..+.+.++.++..|.+.|..+.+
T Consensus 203 KaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 203 KALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc
Confidence 66778888999999999887654
No 334
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=33.01 E-value=7.3e+02 Score=27.70 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=23.0
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG 272 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 272 (845)
.....+|.+...|..+-.+ ...++...|+.|.+..
T Consensus 114 ~E~~L~P~f~~ILq~dV~E-------------------------F~PYvfQIla~Lle~~ 148 (435)
T PF03378_consen 114 FEEALFPPFQEILQQDVQE-------------------------FIPYVFQILAQLLELR 148 (435)
T ss_dssp HHHHHHHHHHHHHHTT-TT-------------------------THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHcC
Confidence 4556777777777766555 5667777777776543
No 335
>KOG2229|consensus
Probab=32.78 E-value=73 Score=35.23 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=34.2
Q ss_pred hHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHH
Q psy12605 741 PPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYD 806 (845)
Q Consensus 741 ~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~ 806 (845)
..++.||..+|..--.-|+..+..|.+..- -.....+..+..-..|.++.+.--+..
T Consensus 103 ~~~fsml~~~d~~~ak~a~~~~~eL~kr~i---------W~d~~tV~i~~~acf~~~~ki~vs~l~ 159 (616)
T KOG2229|consen 103 AFMFSMLDQSDSTAAKMALDTMIELYKRNI---------WNDSKTVNIITTACFSKVPKILVSGLR 159 (616)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHhcc---------cccchhHHHHHHHHhccCcHHHHhhhH
Confidence 445678888888766677777777765421 113444454544456777766554444
No 336
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=32.12 E-value=5.6e+02 Score=26.07 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=41.1
Q ss_pred cCChHHHHHhhCCCChh--------HHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHH
Q psy12605 130 AGAVPLFLRLLMSPHSN--------VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVN 200 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~--------v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~ 200 (845)
.-+.|+++++++.++.. +-+....+|..++ .|-++.|..++.++. ..-+|..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 35899999999877542 2222333333333 345677777776554 44566778888988
Q ss_pred hhcCC
Q psy12605 201 LCRNK 205 (845)
Q Consensus 201 l~~~~ 205 (845)
+....
T Consensus 140 l~~~~ 144 (249)
T PF06685_consen 140 LVHEG 144 (249)
T ss_pred HHHcC
Confidence 88766
No 337
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=31.73 E-value=3.4e+02 Score=25.51 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=53.7
Q ss_pred HHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-hhCCCC--hhHHHHHHHHHHH
Q psy12605 81 IEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPH--SNVCEQAVWALGN 157 (845)
Q Consensus 81 ~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~-lL~s~~--~~v~~~a~~~L~n 157 (845)
...++...+.+.|.+.+. ++++.+-..++.++..+...-..+-+.-.+ =.++.++. +++++. ..-|+.++.++..
T Consensus 66 l~~~lk~~l~~~Ll~~~~-~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~ 143 (168)
T PF12783_consen 66 LINLLKDDLCPALLKNLS-SSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRE 143 (168)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 445667788999999985 455888889999999887542222222111 13444444 666554 3677889999999
Q ss_pred hcCCCh
Q psy12605 158 IIGDGP 163 (845)
Q Consensus 158 la~~~~ 163 (845)
++.+..
T Consensus 144 l~~~p~ 149 (168)
T PF12783_consen 144 LCKDPQ 149 (168)
T ss_pred HHhChh
Confidence 996644
No 338
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=30.74 E-value=61 Score=27.95 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHH
Q psy12605 108 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149 (845)
Q Consensus 108 ~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~ 149 (845)
.....|..++.. |+.=..+++.|+++.|+.||.+++.++..
T Consensus 65 ~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 445667777764 77777899999999999999999877654
No 339
>KOG2549|consensus
Probab=30.32 E-value=7.9e+02 Score=27.99 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-------CChhHHHHHHHHHHHHhc
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-------DRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~i~~~a~~~L~~la~ 118 (845)
+.++. +.+.+.|+..+..|+..|+. ++-.+. ++|.++.++..+ .+-+.........+.|..
T Consensus 209 y~~It-~a~~g~~~~~r~eAL~sL~T------DsGL~~-----LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 209 YKEIT-EACTGSDEPLRQEALQSLET------DSGLQQ-----LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHH-HHHhcCCHHHHHHHHHhhcc------CccHHH-----HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 44555 67778899999999988863 222333 388888888432 233445556666677754
Q ss_pred CChhhHHHHHHcCChHHHHHhhCCC----------ChhHHHHHHHHHHHhcCC
Q psy12605 119 GTSAQTQEVVAAGAVPLFLRLLMSP----------HSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 119 ~~~~~~~~i~~~g~i~~L~~lL~s~----------~~~v~~~a~~~L~nla~~ 161 (845)
|+...-.-.=+..+|.++.++=+. ...+|.-|+..+..++.+
T Consensus 277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~ 328 (576)
T KOG2549|consen 277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKN 328 (576)
T ss_pred -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHh
Confidence 333322222235788888877432 335788888888877754
No 340
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=29.95 E-value=7.3e+02 Score=28.34 Aligned_cols=160 Identities=14% Similarity=0.035 Sum_probs=83.9
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhc--c--------CCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLE--R--------SDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~--~--------~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+++.++...|-..|+++...-+ +..+|..|..+.. . .-++.+|...+..|..-.. .
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~~e--------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~----A- 313 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVSLE--------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI----A- 313 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCCCC--------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH----H-
Confidence 34445566667777776543322 2345777777763 1 1345677666555554210 0
Q ss_pred HHHHHcCChHHHHHhhCCC--ChhHHHHHHHHH---HHhcCCChh-hHHH---HHhcCChhhHHhhh----cCCCCHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSP--HSNVCEQAVWAL---GNIIGDGPQ-LRDY---VINMGVVPPLLSFI----KPDIPISFL 191 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L---~nla~~~~~-~r~~---i~~~g~i~~Lv~ll----~~~~~~~~~ 191 (845)
.-.....+......|.++ +.+++..++..+ .....+.+. .-.. .+..++.|.+ +.- ........|
T Consensus 314 -a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~~~~~~~~~~~~~lR 391 (501)
T PF13001_consen 314 -ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLI-QDSSSQSNSSEDIELR 391 (501)
T ss_pred -HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCcccc-ccccccCCCcccHHHH
Confidence 000112333333445555 567777777766 554443322 1111 1223444444 100 122356888
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
..+-.+|..|++..+... ...-..+..|+.-+..++++
T Consensus 392 ~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~e 429 (501)
T PF13001_consen 392 SLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPE 429 (501)
T ss_pred HHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchH
Confidence 999999999998774321 22346666777767666666
No 341
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=29.74 E-value=7e+02 Score=26.42 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHHHHHc-----------CChHHHHHhhC------CCChhHHHHHHHHHHHhcCCChh
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQEVVAA-----------GAVPLFLRLLM------SPHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~i~~~-----------g~i~~L~~lL~------s~~~~v~~~a~~~L~nla~~~~~ 164 (845)
.-.+|..|+.++..+..+|++.+..+++. .....|+..|- +.++--..-|+.+|..+-.++++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45799999999999999988888877741 11223444444 22333345677788888878877
Q ss_pred hHHHHHh
Q psy12605 165 LRDYVIN 171 (845)
Q Consensus 165 ~r~~i~~ 171 (845)
.|+.+..
T Consensus 131 ~Ke~al~ 137 (312)
T PF04869_consen 131 AKEQALR 137 (312)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 7776654
No 342
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=28.92 E-value=1.3e+02 Score=21.98 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=29.5
Q ss_pred HHHHHHhChHHHHHhhhcC-CCHHHHHHHHHHHHHh
Q psy12605 777 ANMIEECGGLDKIEMLQNH-ENVEIYKLAYDIIERY 811 (845)
Q Consensus 777 ~~~~~e~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~ 811 (845)
.+.+.+.|.-..+..|..+ +++++++.|..++.+.
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4678889988888899888 8999999999999865
No 343
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=28.84 E-value=3.5e+02 Score=23.78 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=45.7
Q ss_pred ccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhH-HHHHHHHHHHHhcCC
Q psy12605 326 ALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNL-QFEAAWALTNIASGT 403 (845)
Q Consensus 326 ~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v-~~~a~~~L~~l~~~~ 403 (845)
.+|.+...+. +..++.+..+...++.++...+ .+..++..+++.+-... .... +..+..++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~----~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNW----TQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHcc
Confidence 5677888887 6778999999999999866533 22334556666555442 2222 477888888887644
No 344
>KOG2199|consensus
Probab=28.65 E-value=2.2e+02 Score=30.54 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=60.5
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh-hhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~-~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
++..+.+-|+..++.|...|+..|..++..+. .+|..+....+...|..++.+.....++.....++.+.+..-...+.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Confidence 67788899999999999999999999986653 36677777777888888887655667777777777777664433344
Q ss_pred hh
Q psy12605 211 MS 212 (845)
Q Consensus 211 ~~ 212 (845)
+.
T Consensus 126 ls 127 (462)
T KOG2199|consen 126 LS 127 (462)
T ss_pred hh
Confidence 43
No 345
>KOG2199|consensus
Probab=28.62 E-value=4.8e+02 Score=28.17 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=61.1
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCC
Q psy12605 414 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 492 (845)
Q Consensus 414 g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~ 492 (845)
.++..+.+-|+..++.|...|+..+..++.++ ..+|..+....+...|..++.+.....+...+.-++.+.+...+..+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 35677888899999999999999999998765 44666676777777777777754444555555555555555444444
Q ss_pred ChhHHHhHHHHH
Q psy12605 493 SMSTIIELLPAL 504 (845)
Q Consensus 493 ~~~~~~~~l~~l 504 (845)
.+..+......|
T Consensus 125 ~lsLi~~l~~kl 136 (462)
T KOG2199|consen 125 SLSLISALYKKL 136 (462)
T ss_pred chhHHHHHHHHH
Confidence 444444444433
No 346
>KOG0392|consensus
Probab=28.07 E-value=6.1e+02 Score=32.05 Aligned_cols=238 Identities=18% Similarity=0.180 Sum_probs=122.5
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhh--cc-CC------ChhHHHHHHHH
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECL--ER-SD------RPNLQFEAAWA 112 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL--~~-~~------~~~i~~~a~~~ 112 (845)
++.-+++++ +.+-++....|..+..+++.++...........++. .+-+++..+ .. .+ -..+|..++++
T Consensus 75 f~s~~e~L~-~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~ 152 (1549)
T KOG0392|consen 75 FLSFLEELV-NDLFEPQWEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQA 152 (1549)
T ss_pred HHHHHHHHH-HHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHH
Confidence 334467777 778888899999999999998875433222222222 122222221 10 11 12578888888
Q ss_pred HHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCCCCHHH
Q psy12605 113 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPDIPISF 190 (845)
Q Consensus 113 L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~~~~~~ 190 (845)
|..+..+-.+ ..+ ...+..+.+++..+.-+++--.+..+..... ..++.+.. .-+++..+.-+... +.++
T Consensus 153 L~~~l~~~~~--s~~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L~ds-~ddv 224 (1549)
T KOG0392|consen 153 LGAYLKHMDE--SLI--KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGLEDS-DDDV 224 (1549)
T ss_pred HHHHHHhhhh--Hhh--HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhc-chHH
Confidence 8887653211 111 1356677777777765555444444433321 11111111 01234444455544 5688
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc-hhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh
Q psy12605 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT-SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~ 269 (845)
+..|+..+.-..... .......+...+..++..+..-|. ..... . + -..+..+.
T Consensus 225 ~~~aa~~l~~~~s~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~----------s----------i----~~ll~~l~ 279 (1549)
T KOG0392|consen 225 RSVAAQFLVPAPSIQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTA----------S----------I----MHLLDELC 279 (1549)
T ss_pred HHHHHHHhhhhhHHH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhH----------H----------H----HHHHHHHh
Confidence 888888887665544 112222233444444444332111 10000 0 0 00001111
Q ss_pred cCC--hhh-HHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC
Q psy12605 270 DGG--NDQ-IQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 270 ~~~--~~~-~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 314 (845)
... .+. .+.-.+.|+++.+..++++.-..++.++++.+..+....
T Consensus 280 ~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 280 IENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 100 000 011123589999999999988889999999999887543
No 347
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=27.58 E-value=1.5e+02 Score=33.40 Aligned_cols=40 Identities=28% Similarity=0.262 Sum_probs=33.6
Q ss_pred cHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 80 PIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 80 ~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
..+++.+.++|+.|+.+|..+.+++++..|+.+|..+..-
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~i 93 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRI 93 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467778999999999997677889999999999888653
No 348
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=27.47 E-value=1.2e+03 Score=28.25 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=67.3
Q ss_pred chhHHHHHHHhhcccCCHHHHHHHH-HcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------h
Q psy12605 711 TQKEAAWAISNLTISGNRDQVAKLV-QEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEE------C 783 (845)
Q Consensus 711 ~~~~a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e------~ 783 (845)
+....+.+|..++ ..+++++..++ +.+....++.++-+++.++..+|...|..... .+...+.+...++. .
T Consensus 497 ~~~~~~~il~rls-~~~~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d-~~~R~e~i~~ll~~~~~~tL~ 574 (727)
T PF12726_consen 497 ITDLISQILERLS-DFDPSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD-VDGRLEAIQALLQSNFSPTLS 574 (727)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHhHHHHHH
Confidence 4455677888888 45889888888 56999999999999999999999999999874 33333333333332 3
Q ss_pred ChHHHHHhhhcCCC----HHHHHHHHHHHHHh
Q psy12605 784 GGLDKIEMLQNHEN----VEIYKLAYDIIERY 811 (845)
Q Consensus 784 g~~~~L~~l~~~~~----~~v~~~a~~~l~~~ 811 (845)
|....|.++...+. +.+-+-..++|+-+
T Consensus 575 ai~~~l~~~~~~~~~~p~pr~vr~~~DIi~~L 606 (727)
T PF12726_consen 575 AINWSLRQLTKLKFFEPCPRMVRCLMDIIEVL 606 (727)
T ss_pred HHHHHHHHHHhhhhhcchHHHHHHHHHHHHHH
Confidence 45555666655443 33444455555544
No 349
>KOG2140|consensus
Probab=27.40 E-value=3e+02 Score=30.86 Aligned_cols=19 Identities=37% Similarity=0.400 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCcccCCCC
Q psy12605 818 EDNLGPQVTDGGFELDQNP 836 (845)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~ 836 (845)
+|+++|+..=|.|.+|+|-
T Consensus 375 ~de~dpe~~L~vFk~dp~f 393 (739)
T KOG2140|consen 375 EDEDDPEKELGVFKKDPNF 393 (739)
T ss_pred ccccChhhhhcccccCccH
Confidence 4778888888999988763
No 350
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=27.33 E-value=23 Score=35.57 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=21.4
Q ss_pred hhhhHHHHHHhhhhhHHHHHhhcC
Q psy12605 3 RRRNEVTVELRKNKREETLQKRRN 26 (845)
Q Consensus 3 ~~r~~~~~~lrk~kr~~~~~~~R~ 26 (845)
..|+.++.++|++||++.++.+|.
T Consensus 10 ~~r~~~~~~~~~~k~~~~~~~~r~ 33 (225)
T cd01882 10 AARQFQRTADIEEKKLHVPVVDRT 33 (225)
T ss_pred HHHHHHHHHHhhhccccceeeccc
Confidence 357888999999999999999896
No 351
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=26.30 E-value=60 Score=28.00 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=33.7
Q ss_pred HHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHH
Q psy12605 714 EAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQV 757 (845)
Q Consensus 714 ~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~ 757 (845)
+....+..++ ..|+-...+++.|+++.|+.+|.+.+.++...
T Consensus 65 ~~Ik~l~~La--~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLA--TAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHcc--CChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 4555666665 67888888999999999999999988877544
No 352
>KOG2038|consensus
Probab=26.08 E-value=5.5e+02 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=17.5
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhH
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD 770 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~ 770 (845)
+|..|..+-+..=+.++..++..++.|+..-+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kP 336 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKP 336 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCc
Confidence 33444444444445666666666666665443
No 353
>KOG0301|consensus
Probab=26.01 E-value=1.1e+03 Score=27.56 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHHHH---HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhc
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQEVV---AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~i~---~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~ 172 (845)
.++++.-|+.+|+-+..+.+-+...+- .+..+..++..+. .++..+..++++|.|+..+ +..++.+...
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 357788889999888876443333322 2345666666666 5677889999999999876 6677766543
No 354
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=25.55 E-value=1.6e+02 Score=27.10 Aligned_cols=44 Identities=30% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcC
Q psy12605 106 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 160 (845)
Q Consensus 106 ~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~ 160 (845)
+..|...|+.+-.+. -|++|+.+|.++++++...|+.+|.+.--
T Consensus 80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 455556665554331 48999999999999999999999987653
No 355
>KOG0392|consensus
Probab=25.48 E-value=8.1e+02 Score=31.07 Aligned_cols=242 Identities=15% Similarity=0.124 Sum_probs=114.7
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.+..|+..+ .+...++|..++-+|+.+.+.+...... . .+.....+.++.++
T Consensus 78 ~~e~L~~~~-~~~~we~rhg~~i~lrei~~~h~~~~~~-----------~-------~led~~~rll~v~~--------- 129 (1549)
T KOG0392|consen 78 FLEELVNDL-FEPQWEIRHGAAIALREILKTHGDSLSY-----------E-------LLEDLLIRLLCVLA--------- 129 (1549)
T ss_pred HHHHHHHHh-cCchhhhhcCcchhhhhHHHHhcchhhH-----------H-------HHHHHHHHHHHHHH---------
Confidence 466667666 4666788888888888887532211111 0 01222222222222
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
+..+=++.....-..+++.++|+|..+.++-+. ......+..+.+++..+..+
T Consensus 130 ------Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~----s~~~~~~~il~q~~~q~~w~----------------- 182 (1549)
T KOG0392|consen 130 ------LDRFGDFISDNVVAPVREACAQALGAYLKHMDE----SLIKETLDILLQMLRQPNWE----------------- 182 (1549)
T ss_pred ------HHHhcccccccchhhhHHHHHHHHHHHHHhhhh----HhhHHHHHHHHHHHcCcchh-----------------
Confidence 111112222222346788888888888776532 23456666777777766444
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh-HHHHhcCCcc
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ-TQVILNCDAL 327 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~i~~~~~l 327 (845)
++...+..+.|.-....+....+ -.-+++..+..|.+.+.+++..|...+.-+...-... .+.+. ..+
T Consensus 183 --------ir~Ggll~iky~~air~d~l~~~-~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv 251 (1549)
T KOG0392|consen 183 --------IRHGGLLGIKYNVAIRQDLLFQL-LNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLV 251 (1549)
T ss_pred --------heechHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHH--HHH
Confidence 22222222222111111111111 1234566777778888888888887777665432110 11111 122
Q ss_pred chhhHhhcCCch--hhHHHHHHHHHHhhcCC--hHHHHHH-HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 328 SHFPALLTHPKE--KICKEAVWFLSNITAGN--QAQVQAV-IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 328 ~~L~~lL~~~~~--~~~~~a~~~L~nl~~~~--~~~~~~l-~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
..+...+..-+. .-.......+..++... .+..... .+.+++|.+..++.+. =..++..++..+..+.+
T Consensus 252 ~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~-----i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 252 HTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT-----ISSVRRAALETLAMLLE 325 (1549)
T ss_pred HHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 233333322111 00011111222332222 1111111 2357888888888774 45666777777777665
No 356
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=25.27 E-value=2e+02 Score=26.54 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
....|++.||.+..+. -+..|+.+|.+.++.+...|+.+|.+.
T Consensus 79 s~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp -HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred CHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 3556777777764331 357899999888999999999999985
No 357
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.57 E-value=1.2e+02 Score=26.67 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=32.6
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHH
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~ 170 (845)
=+|+.|+.-|.++++++...|+.+|-..|.+. ...+.++
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 37899999999999999999999999999765 4555444
No 358
>KOG0301|consensus
Probab=24.29 E-value=1.2e+03 Score=27.32 Aligned_cols=162 Identities=10% Similarity=0.089 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHH---HhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC--Cccchhh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMV---IDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC--DALSHFP 331 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~---~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~ 331 (845)
++.-|+..|+.+..+....--.. ....++..++..+. .++.-+..++|+|.|+..+ ...++.+... ..+..+.
T Consensus 560 ~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~~~~~ 637 (745)
T KOG0301|consen 560 MMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESILDPVI 637 (745)
T ss_pred HhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHhhhhh
Confidence 66677777777666543321111 11235555666554 5677788999999999776 4444444332 1122222
Q ss_pred HhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHH
Q psy12605 332 ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVV 411 (845)
Q Consensus 332 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 411 (845)
+.-...+..++........|.+.. ..+.--+.+..+.|...+.......++-+.......|+++++..+.. ...+.
T Consensus 638 ~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~-~~~~A 713 (745)
T KOG0301|consen 638 EASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS-VIQLA 713 (745)
T ss_pred hhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH-HHHHH
Confidence 222233445554444444443211 11111224555555555543321113344566677888888776533 33333
Q ss_pred HcCChHHHHHhhC
Q psy12605 412 AAGAVPLFLRLLM 424 (845)
Q Consensus 412 ~~g~i~~Lv~lL~ 424 (845)
..-.+..+.+-+.
T Consensus 714 ~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 714 KNRSVDSIAKKLK 726 (745)
T ss_pred HhcCHHHHHHHHH
Confidence 3334444444443
No 359
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=24.13 E-value=2.6e+02 Score=29.85 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHcC--ChHHHHHhhCCC---ChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 104 NLQFEAAWALTNIASGTSAQTQEVVAAG--AVPLFLRLLMSP---HSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 104 ~i~~~a~~~L~~la~~~~~~~~~i~~~g--~i~~L~~lL~s~---~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.+|..|..+|..+.. ++.....++..+ .+..|++++..+ ...++..|+.+|..|+.+.....+.
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V 305 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDV 305 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHH
Confidence 456677666666653 355666777766 999999999875 4588999999999999776544443
No 360
>KOG1087|consensus
Probab=24.00 E-value=1.7e+02 Score=32.82 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCC--
Q psy12605 719 ISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHE-- 796 (845)
Q Consensus 719 l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~-- 796 (845)
||.++ ..++.+.. .++..|-+-+.+.+..++..||..|..|++-++.. +-..+.+.++++-+..+.-..
T Consensus 25 IcD~I-N~~~~~~~-----eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~---fh~~Va~k~fL~emVk~~k~~~~ 95 (470)
T KOG1087|consen 25 ICDLI-NSTEGGPK-----EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS---FHLQVASKEFLNEMVKRPKNKPR 95 (470)
T ss_pred HHHHH-hcCccCcH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHhccccCCc
Q ss_pred CHHHHHHHHHHHHHhcCcccCCCCCCCCC
Q psy12605 797 NVEIYKLAYDIIERYFSEVEDEDNLGPQV 825 (845)
Q Consensus 797 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~ 825 (845)
+..|++|+..+|+.........+-+-|++
T Consensus 96 ~~~Vr~kiL~LI~~W~~af~~~~~~~~~~ 124 (470)
T KOG1087|consen 96 DLKVREKILELIDTWQQAFCGPDGYLPDY 124 (470)
T ss_pred chhHHHHHHHHHHHHHHHccCCCCcchhH
No 361
>KOG1988|consensus
Probab=23.75 E-value=1.2e+03 Score=28.30 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=84.9
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-c
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-A 130 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~ 130 (845)
..+.++....+-.++..+-++....+ ...++++- .=.|.... ..++..+|...+.+...-. .+...+.. .
T Consensus 31 kGlr~~~t~eqpeavvr~~RLFek~P---fpifiNs~-llrLaDaF-~~Gn~llRf~V~rv~~q~g----~hln~v~n~a 101 (970)
T KOG1988|consen 31 KGLRSGKTSEQPEAVVRFPRLFEKYP---FPIFINSQ-LLRLADAF-PVGNNLLRFAVLRVDQQSG----KHLNKVLNGA 101 (970)
T ss_pred hcccccccccchHHHHHHHHHHhhCC---chhhhhHH-HHHHHHHh-ccCcHHHHHHHHHHHhhcc----ccchhhhhhh
Confidence 45666666666777777777655442 23333332 33445555 3456677777666666432 23333322 2
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhh-hcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF-IKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
..+..+.....+.|+.-+..+++.+|.++.--|+. ...+.++.. +.+. ++--.+.|..+..+++...+
T Consensus 102 E~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~-helE~eaa~~Aaa~Faa~sk--- 170 (970)
T KOG1988|consen 102 EFLRRIFYVDHSNDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSH-HELEVEAAEFAAACFAAQSK--- 170 (970)
T ss_pred hhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCc-cchhhHHHHHHHhhhhhhhh---
Confidence 34444444556789999999999999887544432 234444432 3222 22334566666666665432
Q ss_pred ChhHHhhHHHHHHhhcccCCch
Q psy12605 210 SMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
....+....+..++...+..
T Consensus 171 --~FA~si~gkis~mIef~d~~ 190 (970)
T KOG1988|consen 171 --DFACSICGKISDMIEFLDLP 190 (970)
T ss_pred --hhHHHHHHHHHHHhhcccCC
Confidence 12334444555555544433
No 362
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.34 E-value=1.2e+02 Score=31.80 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC--------------hhhHHHHHHcCChHHHHHhhCC
Q psy12605 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT--------------SAQTQEVVAAGAVPLFLRLLMS 142 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~--------------~~~~~~i~~~g~i~~L~~lL~s 142 (845)
......+..+++-|. +.+...|..|+.+|..++.|. .++...+.+.|++++|..+|+.
T Consensus 56 ~~~~~~i~~ll~~L~-~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLE-SSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334567888999994 567788999999999999765 3344556677888888887753
No 363
>KOG2073|consensus
Probab=23.23 E-value=2.1e+02 Score=34.60 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=30.4
Q ss_pred CCCCccchhHHHHHHHhhccc-----CCHHHHHHHHHcCCchHHhh-hhc
Q psy12605 705 PQGEFQTQKEAAWAISNLTIS-----GNRDQVAKLVQEGVIPPFCD-LLS 748 (845)
Q Consensus 705 ~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~l~~~~~i~~L~~-~L~ 748 (845)
.+.+++++..|..+|+.++.. +.....++|...+.+..|+. +|+
T Consensus 201 ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~ 250 (838)
T KOG2073|consen 201 PSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLE 250 (838)
T ss_pred CccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHcc
Confidence 445578888888888888765 55566777776677777665 444
No 364
>KOG2676|consensus
Probab=23.08 E-value=1.4e+02 Score=31.54 Aligned_cols=61 Identities=5% Similarity=0.013 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChhhHHHHhcCCccchhhHhh--cCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 303 SLRAVGNIVTGTDEQTQVILNCDALSHFPALL--THPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 303 al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL--~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
.++.|+++|...++.+..+.+-||++.++.-. ++.+|-+++-...|+.++..++.+..+.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 67899999998888888899999999887765 45678999999999999988877775544
No 365
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=23.04 E-value=8.4e+02 Score=25.08 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=25.5
Q ss_pred HHHHhcCchhhHHhhccCC-chhhHHHHHHHHHHHhcCC
Q psy12605 277 QMVIDSGVVPSLIPLLSHK-EVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 277 ~~~~~~g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~ 314 (845)
..+.+.|+...|+.+.++. ..+.....+.++..+..+-
T Consensus 172 ~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 172 WALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 3445778888888888665 3445557777777776654
No 366
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=22.95 E-value=2.7e+02 Score=27.33 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHHHhcCchhhHHhhccCC------------------chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC
Q psy12605 276 IQMVIDSGVVPSLIPLLSHK------------------EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP 337 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL~~~------------------~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~ 337 (845)
.+.+.+.|++..++.+|..+ -..+...+.+.|..++.++...+..+.+. ++.+...+...
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~ 113 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL 113 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh
Confidence 34555556666666666221 13567889999999999988777766543 33333333322
Q ss_pred chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhc
Q psy12605 338 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379 (845)
Q Consensus 338 ~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~ 379 (845)
....--.+..++..+..++......+.+.. +..+++++...
T Consensus 114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~ 154 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKH 154 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT------------------------
T ss_pred hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHc
Confidence 222223456677777777777766665544 88888888764
No 367
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=22.91 E-value=1.3e+02 Score=26.84 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=52.9
Q ss_pred cchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhh---ccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhCh
Q psy12605 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLL---SCKDAQVIQVVLDGINNMLKMADAQVETLANMI-EECGG 785 (845)
Q Consensus 710 ~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L---~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~-~e~g~ 785 (845)
........-++..+.. . .....+ +..|..-| +..+..++..||..|..|+..|...+ +.-+ .....
T Consensus 18 gp~~~~l~eIa~~t~~-~-~~~~~I-----~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~---~~~~~~~~~~ 87 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYN-S-KDCQEI-----MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF---VDELRDHIDI 87 (125)
T ss_dssp S--HHHHHHHHHHTTS-C-HHHHHH-----HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH---HHHHHHTHHH
T ss_pred CcCHHHHHHHHHHHhc-c-ccHHHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHH
Confidence 3444455556666622 2 333333 33455555 55788999999999999999988753 3333 22233
Q ss_pred HHHHHhhhc-CC---C--HHHHHHHHHHHHHhcC
Q psy12605 786 LDKIEMLQN-HE---N--VEIYKLAYDIIERYFS 813 (845)
Q Consensus 786 ~~~L~~l~~-~~---~--~~v~~~a~~~l~~~~~ 813 (845)
+..|.++.. ++ + ..|+++|..+++-.++
T Consensus 88 I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 88 IRELQDFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp HHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred HhhcceeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 344443322 11 1 3499999999987654
No 368
>KOG4524|consensus
Probab=22.86 E-value=3.4e+02 Score=32.99 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=65.5
Q ss_pred HhcCCHHHHHHhhccCCChhHHHHHHHHHHH----HhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcC
Q psy12605 85 IHSGILPVLVECLERSDRPNLQFEAAWALTN----IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 160 (845)
Q Consensus 85 ~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~----la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~ 160 (845)
+-..++..-+.+| ++.+..+|..|+.+|.. |++. ++.-.-.-+-.+|.++..+...++-+...|+.++.+++.
T Consensus 800 iv~kIl~r~~~~L-S~e~l~irvkaLdvl~~gl~~La~~--~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 800 IVLKILGRGIHLL-SHESLRIRVKALDVLSLGLPLLATY--HNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHh-cchhHHHHHHHHHHHHhccHHHhcc--chhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 3455677778888 57778999999998875 3332 222222224689999999999999999999999999987
Q ss_pred CChhhHHHHHhcCChhhHHhhh
Q psy12605 161 DGPQLRDYVINMGVVPPLLSFI 182 (845)
Q Consensus 161 ~~~~~r~~i~~~g~i~~Lv~ll 182 (845)
.+.++-..=.-...+|.+-.++
T Consensus 877 ~sgDFv~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 877 YSGDFVASRFLEDVLPWLKHLC 898 (1014)
T ss_pred HhhhHHHHHHHHHHHHHHHHHH
Confidence 6655433222224566665544
No 369
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=22.74 E-value=2.8e+02 Score=22.18 Aligned_cols=51 Identities=29% Similarity=0.385 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHh
Q psy12605 756 QVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 756 ~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
..++++|..|-.... -.+.+.+.+.=..+..|..|+|+++...|..++...
T Consensus 19 ~~~l~~L~~L~~~~~-----t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 19 SRCLDILKKLKKLPI-----TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHHHHHhcCCC-----CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 345555555543332 246777777777888999999999999999998764
No 370
>KOG1525|consensus
Probab=22.44 E-value=1.8e+03 Score=28.62 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=88.9
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
+++|.|-..|.+.+..+|..|.+.+|-+.......-. -.........+.-+.+.+.++|.+++....++...++...+.
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 7889999999999999999999999999876543211 001134455566667788999999998888876665544322
Q ss_pred HHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.. ....++... .+++++.....++..... ......++.. .+..+.+.+.+....||..|+..|..+-
T Consensus 338 ~~-------~~~~l~~~~---~D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlY 404 (1266)
T KOG1525|consen 338 ST-------ILLALRERD---LDEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLY 404 (1266)
T ss_pred HH-------HHHHHHhhc---CChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 21 111122111 233433322211111100 0111222222 5566667778889999999999998875
Q ss_pred c
Q psy12605 443 G 443 (845)
Q Consensus 443 ~ 443 (845)
.
T Consensus 405 k 405 (1266)
T KOG1525|consen 405 K 405 (1266)
T ss_pred H
Confidence 4
No 371
>KOG1988|consensus
Probab=22.20 E-value=6.5e+02 Score=30.27 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=97.9
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhH-hhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA-LLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
..+..+....+++++.-+..+++.++.+..--++ .+-.+.++. -+.+.++-.-+.|+.+..+.+....+...
T Consensus 102 E~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk~FA~ 174 (970)
T KOG1988|consen 102 EFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSKDFAC 174 (970)
T ss_pred hhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhhhhHH
Confidence 4555555556788888899999999988542222 233344444 34555555566777777777655444322
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGN 440 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~n 440 (845)
.+ .|-+...++.+.- ....+...+.++..+..+..- ...+-.....++.+ +..+-...-+.++++
T Consensus 175 si--~gkis~mIef~d~------~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 175 SI--CGKISDMIEFLDL------PVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred HH--HHHHHHHhhcccC------CCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 22 1223344444332 456777777777777543211 11122233444443 333344455556666
Q ss_pred hhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 441 IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 441 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
++... ...-.+-+..+.++++.+...-......|.+.+++..
T Consensus 241 Lasrs-----~~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~r 282 (970)
T KOG1988|consen 241 LASRS-----LVAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAKR 282 (970)
T ss_pred HHHHH-----HHHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhh
Confidence 65422 2233445566777777666555566677777766554
No 372
>KOG2549|consensus
Probab=21.73 E-value=9.3e+02 Score=27.43 Aligned_cols=100 Identities=8% Similarity=0.042 Sum_probs=60.4
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC----------CchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH----------PKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~----------~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
.+-......++.+..|..+ +...-.-.=+..+|.++.++-+ .+-.+|.-|+..+..++....+.... .
T Consensus 259 ~nL~lL~~lm~m~rSLl~N-p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L 336 (576)
T KOG2549|consen 259 NNLELLIYLMRMVRSLLDN-PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-L 336 (576)
T ss_pred ccHHHHHHHHHHHHHHhcC-CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 3455677778888887543 3332222223467777777733 23468999999999988776655444 4
Q ss_pred hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
...++..+.+.+.+.. ......+-+...|..+
T Consensus 337 ~~Rit~tl~k~l~D~~---~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 337 QPRITRTLSKALLDNK---KPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHHHhcCCC---CCchhhhhHHHHHHHh
Confidence 4556666666666543 3445555555555554
No 373
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.51 E-value=5.8e+02 Score=24.01 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=42.0
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
+...+..+...+++.+....+.++.+....+.-.-.... ..+|.+..+|.|..+.-...|+..|..+.
T Consensus 30 ~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~--~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~ 97 (164)
T PF13925_consen 30 IKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCV--DLLPLIEELLQSKYESYISVALEMLRSIL 97 (164)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 444444443344555555555555544333221122222 37899999999999999999999998887
No 374
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.49 E-value=1.1e+02 Score=27.88 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=45.0
Q ss_pred CCHHHHHHhhccCCC---hhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHH
Q psy12605 88 GILPVLVECLERSDR---PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 155 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~---~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L 155 (845)
.++..+.+++..... +++...+..++..+..- -....+.+.+.++.+.++|.+ +++++.|+.||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 345556666643332 78888999999998762 234567777899999999954 45588888876
No 375
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.46 E-value=5.8e+02 Score=22.69 Aligned_cols=95 Identities=8% Similarity=0.023 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH-HHHHHHh-cCChHHHHHHhhhc
Q psy12605 302 ASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA-QVQAVID-AGLLPKIIANLQKV 379 (845)
Q Consensus 302 ~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~l~~-~~~i~~Lv~lL~~~ 379 (845)
....=|.+++..+...... +...|.+-|++.++.++..++.+|..++...+. ....+.. ...|..+.++-...
T Consensus 20 y~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~ 94 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPP 94 (122)
T ss_pred HHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 3444555665554333222 345677777777888888888888888775543 3333332 23344433332211
Q ss_pred cc---ccCChhHHHHHHHHHHHHhc
Q psy12605 380 GR---IVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 380 ~~---~~~~~~v~~~a~~~L~~l~~ 401 (845)
++ ......||..|-.++..|.+
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHhc
Confidence 11 11234566666666665543
No 376
>KOG2149|consensus
Probab=20.65 E-value=7.4e+02 Score=26.95 Aligned_cols=68 Identities=7% Similarity=0.114 Sum_probs=45.8
Q ss_pred CCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHH
Q psy12605 705 PQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQV 773 (845)
Q Consensus 705 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~ 773 (845)
.+.+..+|.....++-.+.....++....++ .=+.+++...+++..++++.-++..|.-++...++.+
T Consensus 109 ~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 109 LDDDSLVRDALYQLLDSLILPACKEDQSPMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred cCccccHHHHHHHHHHHHHhhcchhhhcchH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 4566778888877777766444444422222 1234455556677789999999999999998876653
No 377
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=20.58 E-value=1.5e+02 Score=18.14 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=14.1
Q ss_pred chhHHHHHHHhhcccCCHHHHHHH
Q psy12605 711 TQKEAAWAISNLTISGNRDQVAKL 734 (845)
Q Consensus 711 ~~~~a~~~l~~l~~~~~~~~~~~l 734 (845)
||..|+++|+.+. +++-+..|
T Consensus 1 VR~~Aa~aLg~ig---d~~ai~~L 21 (27)
T PF03130_consen 1 VRRAAARALGQIG---DPRAIPAL 21 (27)
T ss_dssp HHHHHHHHHGGG----SHHHHHHH
T ss_pred CHHHHHHHHHHcC---CHHHHHHH
Confidence 5788999999996 55444433
No 378
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.47 E-value=1.2e+02 Score=29.71 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=54.3
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
....+.+..++.++++-++..++-++....... . .. ..+..+...+.+++.-++....|+|..++...++...
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~-~-~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE-D-FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC-H-HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc-C-HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHH
Confidence 345667788889999999998887766554431 1 11 2334455566778889999999999999999888766
Q ss_pred HHHhc
Q psy12605 362 AVIDA 366 (845)
Q Consensus 362 ~l~~~ 366 (845)
..++.
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 379
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.42 E-value=6.9e+02 Score=23.71 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=54.5
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH--HcCChHHHHHhhCCCChhHHHHHHHHHHHhc-CCChhh
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV--AAGAVPLFLRLLMSPHSNVCEQAVWALGNII-GDGPQL 165 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~--~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla-~~~~~~ 165 (845)
+=|.|+.+|+.. +++......|+.+.+. ....++ +.|.++-|.+.+-+-+..-.+.|.....-|. .-..+.
T Consensus 4 ikplLIsCL~~q---~~k~s~~KiL~~iVs~---Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 4 IKPLLISCLTMQ---ETKESDFKILRRIVSH---VAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEF 77 (174)
T ss_pred hHHHHHHHHHhh---cccHhHHHHHHHHHHH---HHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhH
Confidence 347888999533 3345556677777643 444454 5789999999877644444577777777665 222233
Q ss_pred HHHHHhcCChhhHHhhhcCCC
Q psy12605 166 RDYVINMGVVPPLLSFIKPDI 186 (845)
Q Consensus 166 r~~i~~~g~i~~Lv~ll~~~~ 186 (845)
-...++. ..+.+.+.|.++.
T Consensus 78 l~~~~~~-L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 78 LIPFMEN-LLPEISKVLLPPE 97 (174)
T ss_pred HHHHHHH-HHHHHHHHcCCch
Confidence 3333333 5556666666653
No 380
>KOG2085|consensus
Probab=20.41 E-value=7.3e+02 Score=27.13 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHhc--CChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12605 387 NLQFEAAWALTNIAS--GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 452 (845)
Q Consensus 387 ~v~~~a~~~L~~l~~--~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 452 (845)
.++..--..|.-+.+ .++...+..++...+-.|+.+.+++++.-|...-..|.++-+.-..+|..+
T Consensus 148 hLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fi 215 (457)
T KOG2085|consen 148 HLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFI 215 (457)
T ss_pred HHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 333333333333333 456778889999999999999999999999999999999987666666544
No 381
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=20.07 E-value=3.4e+02 Score=21.68 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=30.0
Q ss_pred HHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHh
Q psy12605 777 ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 777 ~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
.+.+.+.+.-..+..|..|++++++..|..++...
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 46788888878888999999999999999998764
No 382
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.03 E-value=4.9e+02 Score=28.00 Aligned_cols=102 Identities=22% Similarity=0.284 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-----C-ChhHHHHHHHHHHHHhcC
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-----D-RPNLQFEAAWALTNIASG 119 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~-~~~i~~~a~~~L~~la~~ 119 (845)
+..+. +.+.+++...+..|+..|+. + +-.+. ++|.++.++... + +-............|...
T Consensus 180 f~~It-~a~~~~~~~~r~~aL~sL~t----D--~gl~~-----LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 180 FEEIT-EALVGSNEEKRREALQSLRT----D--PGLQQ-----LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHhcc----C--CCchh-----hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 44555 56667777778778777753 2 12222 588888888432 1 334445556666666653
Q ss_pred ChhhHHHHHHcCChHHHHHhhCC----------CChhHHHHHHHHHHHhcC
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMS----------PHSNVCEQAVWALGNIIG 160 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s----------~~~~v~~~a~~~L~nla~ 160 (845)
..=+...-+ +..+|.++.++-+ ....+|+.|+..|+.++.
T Consensus 248 ~~l~le~Yl-h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 248 PNLHLEPYL-HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCchHHhH-HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 222222222 3388888887732 234788888888888873
Done!