Query psy12605
Match_columns 845
No_of_seqs 326 out of 3010
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 23:34:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.8E-60 6.2E-65 547.0 45.8 490 1-845 27-529 (529)
2 3ul1_B Importin subunit alpha- 100.0 2.2E-54 7.6E-59 493.3 47.5 485 6-845 15-510 (510)
3 4b8j_A Importin subunit alpha- 100.0 2.9E-48 1E-52 447.4 48.2 464 1-819 27-502 (528)
4 1wa5_B Importin alpha subunit; 100.0 1E-46 3.4E-51 434.4 43.3 349 1-376 32-392 (530)
5 3now_A UNC-45 protein, SD10334 100.0 3E-44 1E-48 415.9 46.3 521 59-771 218-786 (810)
6 3now_A UNC-45 protein, SD10334 100.0 5.1E-43 1.7E-47 405.7 41.3 615 46-814 8-783 (810)
7 1jdh_A Beta-catenin; beta-cate 100.0 3.7E-40 1.3E-44 380.3 41.4 508 84-811 13-528 (529)
8 2z6g_A B-catenin; FULL-length, 100.0 1.1E-39 3.6E-44 389.6 42.5 543 42-815 113-685 (780)
9 2z6h_A Catenin beta-1, beta-ca 100.0 3.9E-39 1.3E-43 379.4 39.7 511 83-815 9-549 (644)
10 1jdh_A Beta-catenin; beta-cate 100.0 2.1E-38 7.2E-43 365.6 43.9 508 43-765 16-528 (529)
11 2z6h_A Catenin beta-1, beta-ca 100.0 2.1E-38 7.1E-43 373.1 44.0 539 43-806 13-558 (644)
12 2z6g_A B-catenin; FULL-length, 100.0 2.4E-38 8.1E-43 377.9 43.3 540 43-807 149-695 (780)
13 2jdq_A Importin alpha-1 subuni 100.0 7.8E-37 2.7E-41 344.9 43.0 410 46-487 22-444 (450)
14 2jdq_A Importin alpha-1 subuni 100.0 3.3E-37 1.1E-41 347.9 37.5 418 326-819 21-449 (450)
15 3nmz_A APC variant protein; pr 100.0 6.6E-37 2.3E-41 336.7 27.2 364 45-446 33-453 (458)
16 3ul1_B Importin subunit alpha- 100.0 1.7E-34 5.8E-39 329.1 38.0 366 326-813 58-430 (510)
17 3tpo_A Importin subunit alpha- 100.0 8.3E-34 2.8E-38 325.4 40.4 366 326-813 77-449 (529)
18 3l6x_A Catenin delta-1; cateni 100.0 1.5E-34 5.1E-39 324.5 30.0 385 41-458 45-490 (584)
19 3l6x_A Catenin delta-1; cateni 100.0 6.2E-34 2.1E-38 319.4 30.9 368 86-488 46-478 (584)
20 1xm9_A Plakophilin 1; armadill 100.0 2.7E-34 9.1E-39 322.3 27.7 369 44-445 2-451 (457)
21 1xm9_A Plakophilin 1; armadill 100.0 1.4E-33 4.7E-38 316.5 30.7 373 89-489 3-452 (457)
22 4b8j_A Importin subunit alpha- 100.0 2E-31 6.9E-36 306.8 38.3 366 325-813 74-443 (528)
23 3nmz_A APC variant protein; pr 100.0 6.4E-32 2.2E-36 297.1 28.0 378 89-488 33-452 (458)
24 1wa5_B Importin alpha subunit; 100.0 3E-30 1E-34 296.8 39.1 370 325-815 87-459 (530)
25 3nmw_A APC variant protein; AR 100.0 2.9E-28 9.9E-33 260.5 22.5 276 141-447 42-338 (354)
26 3nmw_A APC variant protein; AR 100.0 7.7E-28 2.6E-32 257.2 18.4 277 60-359 47-339 (354)
27 4hxt_A De novo protein OR329; 99.9 2.1E-24 7.3E-29 222.5 23.6 243 88-357 2-244 (252)
28 3opb_A SWI5-dependent HO expre 99.9 5E-24 1.7E-28 241.6 26.2 469 106-769 229-730 (778)
29 4db8_A Armadillo-repeat protei 99.9 2.9E-24 1E-28 221.5 21.1 240 88-354 12-251 (252)
30 4hxt_A De novo protein OR329; 99.9 3.3E-23 1.1E-27 213.5 26.8 243 216-489 2-244 (252)
31 4db8_A Armadillo-repeat protei 99.9 3.2E-23 1.1E-27 213.7 25.4 240 216-486 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 5.1E-22 1.8E-26 225.2 33.4 402 44-486 254-728 (778)
33 4fdd_A Transportin-1; heat rep 99.9 4.5E-23 1.5E-27 251.0 20.1 598 55-772 58-747 (852)
34 1xqr_A HSPBP1 protein; armadil 99.9 3.7E-22 1.3E-26 207.4 20.0 230 385-817 53-291 (296)
35 1b3u_A Protein (protein phosph 99.9 4.1E-20 1.4E-24 215.5 37.2 569 46-811 12-585 (588)
36 4fdd_A Transportin-1; heat rep 99.9 4.7E-21 1.6E-25 233.2 27.8 659 46-811 15-740 (852)
37 4db6_A Armadillo repeat protei 99.9 7.7E-21 2.6E-25 189.9 21.8 200 214-443 10-209 (210)
38 4db6_A Armadillo repeat protei 99.9 2.7E-20 9.2E-25 185.9 23.1 200 281-486 10-209 (210)
39 1xqr_A HSPBP1 protein; armadil 99.9 9E-21 3.1E-25 197.0 18.3 189 103-317 54-243 (296)
40 3tt9_A Plakophilin-2; cell adh 99.8 3.6E-20 1.2E-24 183.7 15.0 210 89-313 9-230 (233)
41 1b3u_A Protein (protein phosph 99.8 2E-18 7E-23 201.1 31.0 524 56-765 59-585 (588)
42 2bpt_A Importin beta-1 subunit 99.8 8.4E-18 2.9E-22 205.4 35.3 635 45-808 5-706 (861)
43 3tt9_A Plakophilin-2; cell adh 99.8 1.3E-18 4.3E-23 172.6 18.9 199 284-488 9-231 (233)
44 2bpt_A Importin beta-1 subunit 99.8 4.9E-17 1.7E-21 198.6 35.7 611 47-778 42-722 (861)
45 2vgl_B AP-2 complex subunit be 99.8 1.2E-17 4E-22 193.5 28.5 367 46-488 15-384 (591)
46 3grl_A General vesicular trans 99.8 6.2E-16 2.1E-20 170.9 40.1 450 42-551 19-529 (651)
47 1qgr_A Protein (importin beta 99.8 4.8E-17 1.6E-21 199.0 29.5 642 47-813 38-827 (876)
48 3grl_A General vesicular trans 99.7 7.8E-15 2.7E-19 162.2 39.5 285 174-488 22-344 (651)
49 1qgr_A Protein (importin beta 99.7 2.4E-16 8.3E-21 192.8 29.8 609 45-775 2-687 (876)
50 1u6g_C TIP120 protein, CAND1; 99.7 7.3E-16 2.5E-20 195.0 30.0 642 45-815 7-723 (1230)
51 2vgl_B AP-2 complex subunit be 99.7 1.2E-14 4.3E-19 168.1 32.2 363 53-488 94-459 (591)
52 1w63_A Adapter-related protein 99.7 6.6E-14 2.3E-18 162.6 35.5 360 46-488 36-416 (618)
53 1u6g_C TIP120 protein, CAND1; 99.6 5.7E-14 2E-18 177.7 27.2 429 46-520 177-713 (1230)
54 1w63_A Adapter-related protein 99.5 2.3E-12 7.9E-17 149.6 32.1 387 44-486 70-490 (618)
55 1oyz_A Hypothetical protein YI 99.5 7.9E-13 2.7E-17 137.9 23.4 258 86-440 21-279 (280)
56 1ibr_B P95, importin beta-1 su 99.5 2.2E-13 7.7E-18 153.2 19.1 414 45-505 2-457 (462)
57 1oyz_A Hypothetical protein YI 99.5 1.4E-12 4.9E-17 136.0 23.5 257 128-481 20-277 (280)
58 2vgl_A Adaptor protein complex 99.4 4.5E-10 1.5E-14 129.8 38.0 362 46-486 37-433 (621)
59 1ibr_B P95, importin beta-1 su 99.3 6.8E-12 2.3E-16 141.0 15.6 355 48-444 39-438 (462)
60 2vgl_A Adaptor protein complex 99.2 1.3E-08 4.3E-13 117.7 33.5 387 44-486 74-509 (621)
61 3ltm_A Alpha-REP4; protein eng 99.2 3.4E-10 1.2E-14 112.3 17.2 188 87-356 18-205 (211)
62 3ltj_A Alpharep-4; protein eng 99.2 5.8E-10 2E-14 109.7 18.2 184 87-352 13-196 (201)
63 3ltm_A Alpha-REP4; protein eng 99.2 8.7E-10 3E-14 109.3 18.1 187 44-314 19-205 (211)
64 3ltj_A Alpharep-4; protein eng 99.1 1.2E-09 4.1E-14 107.4 18.2 184 44-311 14-197 (201)
65 4gmo_A Putative uncharacterize 99.0 1E-08 3.5E-13 120.1 19.1 217 87-353 34-257 (684)
66 4gmo_A Putative uncharacterize 98.8 1.6E-08 5.5E-13 118.5 13.6 200 284-486 35-258 (684)
67 1wa5_C Importin alpha RE-expor 98.7 2.9E-05 1E-09 95.1 37.9 428 48-511 39-560 (960)
68 4ady_A RPN2, 26S proteasome re 98.6 9.8E-06 3.3E-10 94.6 25.6 274 89-446 393-679 (963)
69 3tjz_B Coatomer subunit gamma; 98.5 1.1E-06 3.9E-11 92.2 16.2 312 52-439 32-349 (355)
70 2x19_B Importin-13; nuclear tr 98.5 0.00026 9E-09 86.8 38.5 222 46-314 26-270 (963)
71 2db0_A 253AA long hypothetical 98.5 1.8E-05 6.3E-10 71.7 19.9 216 129-400 30-245 (253)
72 2x1g_F Cadmus; transport prote 98.4 2.4E-05 8.3E-10 96.1 27.0 461 52-569 46-614 (971)
73 2db0_A 253AA long hypothetical 98.4 5.1E-05 1.7E-09 68.9 21.1 215 86-353 30-245 (253)
74 4ady_A RPN2, 26S proteasome re 98.4 3.1E-05 1.1E-09 90.4 24.1 298 56-442 406-718 (963)
75 2x1g_F Cadmus; transport prote 98.4 0.00022 7.7E-09 87.5 32.7 139 46-203 9-157 (971)
76 1wa5_C Importin alpha RE-expor 98.3 0.0062 2.1E-07 74.4 43.3 422 46-525 7-524 (960)
77 3tjz_B Coatomer subunit gamma; 98.3 3.4E-05 1.2E-09 81.0 19.3 262 47-379 71-336 (355)
78 1ho8_A Vacuolar ATP synthase s 98.2 0.00015 5.2E-09 77.7 23.7 343 87-443 76-476 (480)
79 2qk2_A LP04448P; mini spindles 98.2 4.3E-05 1.5E-09 77.0 18.1 186 48-270 19-205 (242)
80 2qk2_A LP04448P; mini spindles 98.2 6.2E-06 2.1E-10 83.2 10.3 185 90-312 17-205 (242)
81 3b2a_A TON_1937, putative unch 98.2 3.9E-05 1.3E-09 73.0 14.7 186 215-444 32-219 (265)
82 1ho8_A Vacuolar ATP synthase s 98.1 3.7E-05 1.2E-09 82.4 16.0 255 92-354 171-476 (480)
83 3b2a_A TON_1937, putative unch 98.1 0.0001 3.5E-09 70.2 16.9 202 131-378 33-235 (265)
84 2x19_B Importin-13; nuclear tr 98.1 0.0015 5.2E-08 80.0 31.2 409 52-488 64-558 (963)
85 1te4_A Conserved protein MTH18 98.1 5.8E-07 2E-11 81.1 0.2 122 281-441 10-131 (131)
86 2qk1_A Protein STU2; STU2P, XM 98.0 2.3E-05 7.8E-10 79.0 10.6 191 93-312 21-220 (249)
87 1te4_A Conserved protein MTH18 98.0 1.5E-06 5.2E-11 78.3 1.5 109 87-231 11-119 (131)
88 2qk1_A Protein STU2; STU2P, XM 98.0 6.6E-05 2.3E-09 75.6 13.6 193 136-353 21-219 (249)
89 4hat_C Exportin-1; heat repeat 97.9 0.07 2.4E-06 64.8 40.6 359 56-446 206-621 (1023)
90 3m1i_C Exportin-1; heat repeat 97.9 0.019 6.4E-07 70.8 36.1 138 46-203 18-166 (1049)
91 3ibv_A Exportin-T; karyopherin 97.8 0.0038 1.3E-07 75.7 28.3 325 55-404 203-569 (980)
92 4hat_C Exportin-1; heat repeat 97.8 0.0075 2.6E-07 73.2 28.8 234 45-354 17-263 (1023)
93 3m1i_C Exportin-1; heat repeat 97.7 0.012 4.1E-07 72.5 31.2 220 142-402 27-264 (1049)
94 2iw3_A Elongation factor 3A; a 97.5 0.0057 2E-07 72.5 21.2 147 283-443 54-204 (986)
95 3dad_A FH1/FH2 domain-containi 97.4 0.0024 8.4E-08 65.0 15.4 184 287-476 122-326 (339)
96 3dad_A FH1/FH2 domain-containi 97.4 0.0035 1.2E-07 63.9 15.3 174 257-432 134-325 (339)
97 3ibv_A Exportin-T; karyopherin 97.2 0.037 1.3E-06 67.0 24.4 314 95-442 14-360 (980)
98 2iw3_A Elongation factor 3A; a 97.1 0.011 3.8E-07 70.1 18.3 299 46-400 16-323 (986)
99 3gjx_A Exportin-1; transport, 97.0 0.18 6.2E-06 61.1 28.4 227 132-402 29-276 (1073)
100 1lrv_A LRV, leucine-rich repea 96.4 0.0037 1.3E-07 62.0 5.9 186 95-439 57-242 (244)
101 4ffb_C Protein STU2; tubulin f 96.1 0.13 4.3E-06 52.4 16.3 186 52-270 16-212 (278)
102 3oc3_A Helicase MOT1, MOT1; re 96.0 0.023 8E-07 61.2 10.0 246 45-350 175-432 (800)
103 2of3_A ZYG-9; multifunctional 96.0 0.17 5.7E-06 50.5 15.7 178 135-354 50-236 (266)
104 2fv2_A RCD1 required for cell 95.8 0.78 2.7E-05 44.6 18.5 189 257-453 17-233 (268)
105 3u0r_A Apoptosis inhibitor 5; 95.7 1.3 4.6E-05 47.2 21.5 110 101-231 40-149 (507)
106 2of3_A ZYG-9; multifunctional 95.6 0.22 7.6E-06 49.6 14.6 173 100-312 57-236 (266)
107 4ffb_C Protein STU2; tubulin f 95.5 0.36 1.2E-05 49.0 16.5 189 132-354 11-212 (278)
108 3gjx_A Exportin-1; transport, 95.4 7.1 0.00024 47.3 37.3 58 56-119 218-276 (1073)
109 3oc3_A Helicase MOT1, MOT1; re 95.1 0.27 9.4E-06 53.2 14.0 215 89-353 175-403 (800)
110 1lrv_A LRV, leucine-rich repea 94.8 0.014 4.8E-07 57.8 3.2 69 48-154 53-121 (244)
111 2fv2_A RCD1 required for cell 94.1 0.41 1.4E-05 46.5 11.4 144 344-488 75-226 (268)
112 1upk_A MO25 protein; transfera 93.8 2.7 9.3E-05 42.7 17.4 244 125-399 72-330 (341)
113 3c2g_A SYS-1 protein; beta-cat 93.7 4.4 0.00015 40.9 18.2 140 257-399 259-401 (619)
114 3eg5_B Protein diaphanous homo 93.1 2.1 7.2E-05 45.3 16.3 157 46-205 68-248 (383)
115 3l9t_A Putative uncharacterize 93.0 1.8 6.3E-05 41.7 13.8 142 93-281 75-218 (240)
116 2f31_A Diaphanous protein homo 92.8 1.6 5.4E-05 42.7 13.9 112 48-162 4-127 (233)
117 3gs3_A Symplekin, LD45768P; he 92.5 8.9 0.0003 37.8 20.7 102 45-159 16-118 (257)
118 3u0r_A Apoptosis inhibitor 5; 91.8 16 0.00054 39.1 26.0 122 144-311 41-162 (507)
119 3ebb_A Phospholipase A2-activa 91.2 14 0.00048 37.5 19.1 174 90-293 105-286 (304)
120 1upk_A MO25 protein; transfera 91.2 14 0.00049 37.5 22.0 207 215-454 77-297 (341)
121 2f31_A Diaphanous protein homo 90.4 3.6 0.00012 40.1 13.5 157 271-432 32-217 (233)
122 3ebb_A Phospholipase A2-activa 89.7 3 0.0001 42.4 12.5 126 295-425 160-287 (304)
123 3a6p_A Exportin-5; exportin-5, 89.1 8.9 0.0003 47.5 18.6 303 92-443 16-380 (1204)
124 3eg5_B Protein diaphanous homo 89.0 7.2 0.00025 41.2 15.3 158 270-432 97-283 (383)
125 3o2t_A Symplekin; heat repeat, 88.2 15 0.00053 38.4 16.8 89 60-159 40-128 (386)
126 2bnx_A Diaphanous protein homo 87.5 8.7 0.0003 40.6 14.8 113 47-162 7-131 (386)
127 3l9t_A Putative uncharacterize 86.6 5.4 0.00018 38.4 11.2 142 286-453 74-217 (240)
128 3a6p_A Exportin-5; exportin-5, 86.6 27 0.00091 43.2 20.7 140 45-204 12-163 (1204)
129 1lsh_A Lipovitellin (LV-1N, LV 85.6 26 0.00089 42.6 19.6 126 288-445 445-578 (1056)
130 2bnx_A Diaphanous protein homo 85.0 14 0.00048 39.0 14.8 157 272-433 37-222 (386)
131 3c2g_A SYS-1 protein; beta-cat 84.7 36 0.0012 34.5 28.1 119 299-424 259-377 (619)
132 1x5b_A Signal transducing adap 81.9 2.2 7.4E-05 39.0 6.0 75 739-816 53-128 (163)
133 1lsh_A Lipovitellin (LV-1N, LV 72.4 20 0.00067 43.6 12.5 126 52-207 447-580 (1056)
134 2npp_B PP2A, B subunit, serine 70.3 1.2E+02 0.004 32.4 18.9 248 122-405 153-403 (449)
135 3qml_C Protein SLS1, nucleotid 68.8 35 0.0012 34.2 10.9 140 297-442 42-188 (315)
136 3ldz_A STAM-1, signal transduc 67.0 6.3 0.00022 34.8 4.8 74 739-815 43-116 (140)
137 1x5b_A Signal transducing adap 67.0 9.1 0.00031 34.8 6.0 67 52-118 59-125 (163)
138 3o2t_A Symplekin; heat repeat, 62.7 71 0.0024 33.4 12.5 121 282-442 62-182 (386)
139 1vdy_A Hypothetical protein (R 61.2 13 0.00045 32.6 5.6 76 739-817 50-134 (140)
140 3fga_B Serine/threonine-protei 60.3 1.7E+02 0.0058 30.7 18.1 247 121-403 119-368 (403)
141 1juq_A ADP-ribosylation factor 58.0 23 0.00078 32.4 7.0 72 739-813 51-128 (171)
142 1mhq_A ADP-ribosylation factor 57.2 22 0.00076 31.6 6.6 73 739-814 39-117 (148)
143 3zyq_A Hepatocyte growth facto 56.3 11 0.00039 36.3 4.9 67 52-118 52-118 (226)
144 3g2s_A C-terminal fragment of 55.2 21 0.00072 31.8 6.1 72 46-118 50-126 (149)
145 3qml_C Protein SLS1, nucleotid 54.8 99 0.0034 30.9 11.3 135 257-400 44-188 (315)
146 2npp_B PP2A, B subunit, serine 54.5 38 0.0013 36.1 9.0 85 404-489 152-236 (449)
147 1mhq_A ADP-ribosylation factor 54.4 21 0.00072 31.7 6.0 72 46-118 40-116 (148)
148 3g2s_A C-terminal fragment of 54.3 25 0.00086 31.3 6.4 73 739-814 49-127 (149)
149 2jak_A Serine/threonine-protei 53.0 64 0.0022 33.7 10.1 126 404-530 164-293 (392)
150 3fga_B Serine/threonine-protei 51.8 53 0.0018 34.5 9.3 86 403-489 118-203 (403)
151 3ldz_A STAM-1, signal transduc 49.9 19 0.00065 31.7 4.9 65 52-117 49-113 (140)
152 1elk_A Target of MYB1; superhe 47.5 46 0.0016 29.9 7.1 89 65-159 36-129 (157)
153 1juq_A ADP-ribosylation factor 46.8 25 0.00085 32.2 5.3 67 52-118 57-128 (171)
154 1dvp_A HRS, hepatocyte growth 44.5 22 0.00075 34.1 4.8 66 52-117 49-114 (220)
155 3zyq_A Hepatocyte growth facto 44.2 50 0.0017 31.7 7.3 80 132-211 46-126 (226)
156 2jak_A Serine/threonine-protei 43.7 2.1E+02 0.0072 29.8 12.3 84 122-206 165-248 (392)
157 1dvp_A HRS, hepatocyte growth 43.3 61 0.0021 30.9 7.8 74 132-205 43-117 (220)
158 1elk_A Target of MYB1; superhe 32.6 66 0.0023 28.8 5.7 67 52-118 60-130 (157)
159 3gae_A Protein DOA1; UFD3, CDC 32.4 36 0.0012 33.4 4.2 107 294-403 101-219 (253)
160 1vsy_5 Proteasome activator BL 31.6 1.1E+02 0.0036 36.8 8.8 94 132-232 134-232 (997)
161 1vsy_5 Proteasome activator BL 27.2 6.9E+02 0.023 29.8 14.8 102 46-159 135-244 (997)
162 3pst_A Protein DOA1; protein d 25.8 75 0.0026 33.5 5.4 110 53-167 270-396 (425)
163 3gs3_A Symplekin, LD45768P; he 25.6 4.7E+02 0.016 25.4 17.8 120 283-442 53-172 (257)
164 3l3f_X Protein DOA1, DOA1/UFD3 25.5 1.2E+02 0.004 31.3 6.8 108 294-404 210-329 (362)
165 1w9c_A CRM1 protein, exportin 24.6 2.2E+02 0.0075 28.7 8.4 198 597-817 43-249 (321)
166 3pst_A Protein DOA1; protein d 23.0 96 0.0033 32.7 5.6 142 300-451 243-397 (425)
167 1a92_A Delta antigen; leucine 22.0 50 0.0017 22.4 2.0 17 2-18 13-29 (50)
168 3l3f_X Protein DOA1, DOA1/UFD3 21.3 76 0.0026 32.8 4.3 107 54-165 208-331 (362)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-60 Score=546.95 Aligned_cols=490 Identities=49% Similarity=0.842 Sum_probs=386.7
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCCChh------hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHc
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDED------DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLS 74 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~~------~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~ 74 (845)
|||||++++++|||+||+|.++|||++......... ..+......+++++ +.++++|++.+..|+..++++++
T Consensus 27 ~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv-~~l~s~d~~~q~~a~~~~rklLs 105 (529)
T 3tpo_A 27 MRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIV-KGINSNNLESQLQATQAARKLLS 105 (529)
T ss_dssp -----------------CCSCSCCCCCC---------------CGGGSSCCHHHHH-HHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999987533211111 11223456789999 99999999999999999999999
Q ss_pred CCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHH
Q psy12605 75 SDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA 154 (845)
Q Consensus 75 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~ 154 (845)
.+.+++++.+++.|++|.||++|+.++++.+|..|+|+|+++++++++++..+++.|+||.|+.+|.+++++++++|+|+
T Consensus 106 ~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~a 185 (529)
T 3tpo_A 106 REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 185 (529)
T ss_dssp SSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 98889999999999999999999777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHhcCChhhHHhhhcCCC----CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc
Q psy12605 155 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 230 (845)
Q Consensus 155 L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 230 (845)
|+||+.+++++|+.+.+.|++++|+.++..+. ...+.+.++|++++++++..+........+++|.|++++.++++
T Consensus 186 L~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~ 265 (529)
T 3tpo_A 186 LGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 265 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999997643 34678899999999999998888888889999999999999999
Q ss_pred hhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHH
Q psy12605 231 SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI 310 (845)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl 310 (845)
+ ++.+++|+|.+++.+..+..+.+.+.|+++.|+.+|.+++..++.+|+++|+|+
T Consensus 266 ~-------------------------v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 266 E-------------------------VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp H-------------------------HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred H-------------------------HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 8 999999999999999988888999999999999999999999999999999999
Q ss_pred hcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHH
Q psy12605 311 VTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF 390 (845)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~ 390 (845)
+.+++..+..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+++.....
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~---------------------------- 372 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ---------------------------- 372 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH----------------------------
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH----------------------------
Confidence 9999999999999999999999999988888888888888876554443332
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCC
Q psy12605 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP 470 (845)
Q Consensus 391 ~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~ 470 (845)
T Consensus 373 -------------------------------------------------------------------------------- 372 (529)
T 3tpo_A 373 -------------------------------------------------------------------------------- 372 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhcc
Q psy12605 471 ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSH 550 (845)
Q Consensus 471 ~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 550 (845)
T Consensus 373 -------------------------------------------------------------------------------- 372 (529)
T 3tpo_A 373 -------------------------------------------------------------------------------- 372 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHH
Q psy12605 551 NSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630 (845)
Q Consensus 551 ~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L 630 (845)
+++.|++|.|
T Consensus 373 ----------------------------------------------------------------------v~~~g~i~~L 382 (529)
T 3tpo_A 373 ----------------------------------------------------------------------VVNHGLVPFL 382 (529)
T ss_dssp ----------------------------------------------------------------------HHHTTHHHHH
T ss_pred ----------------------------------------------------------------------HHhcCcHHHH
Confidence 3344445555
Q ss_pred HHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCcc
Q psy12605 631 IANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQ 710 (845)
Q Consensus 631 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (845)
+.++ .+++++
T Consensus 383 v~lL----------------------------------------------------------------------~~~~~~ 392 (529)
T 3tpo_A 383 VGVL----------------------------------------------------------------------SKADFK 392 (529)
T ss_dssp HHHH----------------------------------------------------------------------HSSCHH
T ss_pred HHHh----------------------------------------------------------------------cCCCHH
Confidence 5544 344556
Q ss_pred chhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhChHHH
Q psy12605 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA--QVETLANMIEECGGLDK 788 (845)
Q Consensus 711 ~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~--~~~~~~~~~~e~g~~~~ 788 (845)
++++|+|+|+|++..+++++...+++.|++++|+++|+..|++++..++++|.+|++.++. ..+.+...|+++||+++
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 7778888888888777889999999999999999999999999999999999999998765 35678889999999999
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhcCcccC-CCCCCCCCCCCCcccCCCCCCCCCCCCC
Q psy12605 789 IEMLQNHENVEIYKLAYDIIERYFSEVED-EDNLGPQVTDGGFELDQNPSIPNEGFKF 845 (845)
Q Consensus 789 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (845)
|+.|++|+|.+++++|..+|++||..+|+ |++..|+.++++|.|++++.+| +||.|
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~f 529 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP-GTFNF 529 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCCCCCC-CCCCC
Confidence 99999999999999999999999987654 4567899999999998877655 78998
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.2e-54 Score=493.29 Aligned_cols=485 Identities=47% Similarity=0.801 Sum_probs=376.4
Q ss_pred hHHHHHHhhhhhHHHHHhhcCCCCCCCCCh-h---hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccH
Q psy12605 6 NEVTVELRKNKREETLQKRRNVPLADSTDE-D---DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI 81 (845)
Q Consensus 6 ~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~-~---~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~ 81 (845)
.....++|+++++....+++.....+.... . ......+..++++| +.++|+|++.|+.|+..+|++++.++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v-~~l~s~d~~~q~~a~~~~rklls~e~~ppi 93 (510)
T 3ul1_B 15 GSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIV-KGINSNNLESQLQATQAARKLLSREKQPPI 93 (510)
T ss_dssp --------------------------------------CCSSCCHHHHH-HHHTSSCHHHHHHHHHHHHHHHTCSSCCCH
T ss_pred CcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCchH
Confidence 334556677666666665554433222111 1 11122455799999 999999999999999999999999989999
Q ss_pred HHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC
Q psy12605 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 82 ~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
+.++++|+||.||++|+.++++.+|..|+|+|++++++++++++.+++.|+||.|+++|++++++++++|+|+|+||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999997778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCC----CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHH
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~ 237 (845)
+++.|+.+.+.|++++|+.++..+. ...+.+.++|++++++++..+........+++|.|++++.+++++
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~------ 247 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE------ 247 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHH------
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHH------
Confidence 9999999999999999999997643 346788999999999999988888888899999999999999998
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
++..++|+|.+++....+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..
T Consensus 248 -------------------v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~ 308 (510)
T 3ul1_B 248 -------------------VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 308 (510)
T ss_dssp -------------------HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred -------------------HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH
Confidence 9999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 318 TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 318 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
+..+++.|+++.|+.+|.++++.+++.|+|+|+|++.++....+
T Consensus 309 ~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~------------------------------------ 352 (510)
T 3ul1_B 309 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ------------------------------------ 352 (510)
T ss_dssp HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH------------------------------------
T ss_pred HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH------------------------------------
Confidence 99999999999999999988888888888888777555443322
Q ss_pred HHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHH
Q psy12605 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 477 (845)
Q Consensus 398 ~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~ 477 (845)
T Consensus 353 -------------------------------------------------------------------------------- 352 (510)
T 3ul1_B 353 -------------------------------------------------------------------------------- 352 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccc
Q psy12605 478 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSC 557 (845)
Q Consensus 478 ~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 557 (845)
T Consensus 353 -------------------------------------------------------------------------------- 352 (510)
T 3ul1_B 353 -------------------------------------------------------------------------------- 352 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhh
Q psy12605 558 QKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKR 637 (845)
Q Consensus 558 ~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 637 (845)
.+++.|++|.|++++
T Consensus 353 --------------------------------------------------------------~v~~~g~i~~Lv~lL--- 367 (510)
T 3ul1_B 353 --------------------------------------------------------------QVVNHGLVPFLVGVL--- 367 (510)
T ss_dssp --------------------------------------------------------------HHHHTTHHHHHHHHH---
T ss_pred --------------------------------------------------------------HHHhcCCHHHHHHHH---
Confidence 233444555555554
Q ss_pred hhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHH
Q psy12605 638 SCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717 (845)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 717 (845)
.++++++|++|+|
T Consensus 368 -------------------------------------------------------------------~~~~~~v~~~Aa~ 380 (510)
T 3ul1_B 368 -------------------------------------------------------------------SKADFKTQKEAAW 380 (510)
T ss_dssp -------------------------------------------------------------------HSSCHHHHHHHHH
T ss_pred -------------------------------------------------------------------cCCCHHHHHHHHH
Confidence 3455677778888
Q ss_pred HHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhChHHHHHhhhcC
Q psy12605 718 AISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA--QVETLANMIEECGGLDKIEMLQNH 795 (845)
Q Consensus 718 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~--~~~~~~~~~~e~g~~~~L~~l~~~ 795 (845)
+|+|++..+++++...+++.|++++|+++|+..|++++..++++|.+|++.++. ..+.+...|+++||+++|+.|++|
T Consensus 381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~ 460 (510)
T 3ul1_B 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 460 (510)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcC
Confidence 888888777888999999999999999999999999999999999999998765 356788899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcccC-CCCCCCCCCCCCcccCCCCCCCCCCCCC
Q psy12605 796 ENVEIYKLAYDIIERYFSEVED-EDNLGPQVTDGGFELDQNPSIPNEGFKF 845 (845)
Q Consensus 796 ~~~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (845)
+|.+++++|..+|++||..+|+ |++..|+...++|.|++++.+| .||+|
T Consensus 461 ~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 510 (510)
T 3ul1_B 461 ENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP-GTFNF 510 (510)
T ss_dssp SSHHHHHHHHHHHHHHCC---------------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCccccccccCCCCCccccccCCCCCCC-CCCCC
Confidence 9999999999999999987754 4557889999999999877755 78998
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.9e-48 Score=447.36 Aligned_cols=464 Identities=49% Similarity=0.787 Sum_probs=372.7
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCC--C--hhhHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADST--D--EDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSD 76 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~--~--~~~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~ 76 (845)
||+||++++++|||+||+|.+.|||++...... + .+.........++.++ +.+.++++..+..|+..|+++++..
T Consensus 27 ~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv-~~L~s~~~~~~~~A~~~L~~l~s~~ 105 (528)
T 4b8j_A 27 GRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMI-GGVYSDDNNLQLEATTQFRKLLSIE 105 (528)
T ss_dssp CCCCC-----------------CCCC----------------------CHHHHH-HHHTSSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999999997432111 0 0111123456799999 8999999999999999999998877
Q ss_pred CCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHH
Q psy12605 77 KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 156 (845)
Q Consensus 77 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~ 156 (845)
.++....++..|++|.|+++|+.++++.+|..|+++|.+++.++++++..+++.|++|.|+.+|.++++++++.|+|+|+
T Consensus 106 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~ 185 (528)
T 4b8j_A 106 RSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALG 185 (528)
T ss_dssp SSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 66778999999999999999965445999999999999999988999999999999999999999999999999999999
Q ss_pred HhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHH
Q psy12605 157 NIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~ 236 (845)
+|+.+++.++..+.+.|+++.|+.++..+.+..+++.++|+|.+++.+. +........+++|.|+.++.+.++.
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~----- 259 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEE----- 259 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHHHHHTTCCCHH-----
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHCCCCHH-----
Confidence 9999989999999999999999999966667899999999999999987 4556667789999999999998888
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++..++|+|.+++....+..+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++.
T Consensus 260 --------------------v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 260 --------------------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp --------------------HHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence 999999999999998888888888999999999999999999999999999999998888
Q ss_pred hHHHHhcCCccchhhHhhcCC-chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
..+.+++.|+++.|+.+|.+. ++.++..|+|+|+|++.+.+.....+
T Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~-------------------------------- 367 (528)
T 4b8j_A 320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV-------------------------------- 367 (528)
T ss_dssp HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH--------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH--------------------------------
Confidence 888999999999999999988 88888888888888755443332222
Q ss_pred HHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHH
Q psy12605 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475 (845)
Q Consensus 396 L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 475 (845)
T Consensus 368 -------------------------------------------------------------------------------- 367 (528)
T 4b8j_A 368 -------------------------------------------------------------------------------- 367 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 476 ~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
T Consensus 368 -------------------------------------------------------------------------------- 367 (528)
T 4b8j_A 368 -------------------------------------------------------------------------------- 367 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhh
Q psy12605 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635 (845)
Q Consensus 556 ~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~ 635 (845)
++.|++|.|++++
T Consensus 368 ------------------------------------------------------------------~~~~~i~~L~~lL- 380 (528)
T 4b8j_A 368 ------------------------------------------------------------------INAGIIGPLVNLL- 380 (528)
T ss_dssp ------------------------------------------------------------------HHTTCHHHHHHHH-
T ss_pred ------------------------------------------------------------------HHCCCHHHHHHHH-
Confidence 2334455555544
Q ss_pred hhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHH
Q psy12605 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEA 715 (845)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 715 (845)
.+.+++++.+|
T Consensus 381 ---------------------------------------------------------------------~~~~~~v~~~a 391 (528)
T 4b8j_A 381 ---------------------------------------------------------------------QTAEFDIKKEA 391 (528)
T ss_dssp ---------------------------------------------------------------------HHSCHHHHHHH
T ss_pred ---------------------------------------------------------------------hcCCHHHHHHH
Confidence 22345666677
Q ss_pred HHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHhChHHH
Q psy12605 716 AWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ-------VETLANMIEECGGLDK 788 (845)
Q Consensus 716 ~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~-------~~~~~~~~~e~g~~~~ 788 (845)
+|+|+|++..++++....+++.|++++|+.+|...|++++..++++|.+|++.++.. .++|...+.+.|+++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 777777775567788888889999999999999999999999999999999987662 2358899999999999
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhcCcccCCC
Q psy12605 789 IEMLQNHENVEIYKLAYDIIERYFSEVEDED 819 (845)
Q Consensus 789 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 819 (845)
|..|++|++++++++|.+++++||+.++++|
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 9999999999999999999999999877665
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1e-46 Score=434.37 Aligned_cols=349 Identities=49% Similarity=0.762 Sum_probs=297.3
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCC----CCCChh--------hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHH
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLA----DSTDED--------DIEKMAQVNLDMLVVEAARKDNPELQLLAVQS 68 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~----~~~~~~--------~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~ 68 (845)
|||||++.+++|||+||++.+.|||++... ++.++. ..+......++.++ +.|.++++..+..|+..
T Consensus 32 ~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv-~~L~s~~~~~~~~A~~~ 110 (530)
T 1wa5_B 32 LRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT-QQLNSDDMQEQLSATVK 110 (530)
T ss_dssp CCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHH-HHHSCSSHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHH-HHHcCCCHHHHHHHHHH
Confidence 699999999999999999999999998542 111111 11113456789999 89999999999999999
Q ss_pred HHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHH
Q psy12605 69 ARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 148 (845)
Q Consensus 69 l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~ 148 (845)
|+++++...++..+.+++.|++|.|+++|+.++++.+|..|+++|++++.++++++..+++.|++|.|+.+|++++++++
T Consensus 111 L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr 190 (530)
T 1wa5_B 111 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190 (530)
T ss_dssp HHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHH
T ss_pred HHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 99998876566778899999999999999644489999999999999999888899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC
Q psy12605 149 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 228 (845)
Q Consensus 149 ~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 228 (845)
+.|+|+|++++.+++..+..+...|+++.|+.++.+. +..+++.|+|+|.+++.+.++........+++|.|+.++.++
T Consensus 191 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 269 (530)
T 1wa5_B 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC
Confidence 9999999999999889999999999999999999874 668999999999999998756666777889999999999998
Q ss_pred CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHH
Q psy12605 229 DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVG 308 (845)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~ 308 (845)
++. ++..++|+|.+++...++..+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus 270 d~~-------------------------v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 270 DTE-------------------------TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CHH-------------------------HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHH-------------------------HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 888 9999999999999988887888889999999999999999999999999999
Q ss_pred HHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHh
Q psy12605 309 NIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 376 (845)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL 376 (845)
+++.+++...+.+.+.|+++.|+.+|.+.+..++..|+|+|++++.+.+...+.+++.++++.|+.++
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL 392 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99998888888889999999999999998889999999999988766554444444444444444433
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3e-44 Score=415.95 Aligned_cols=521 Identities=14% Similarity=0.103 Sum_probs=428.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH-HcCChHHHH
Q psy12605 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV-AAGAVPLFL 137 (845)
Q Consensus 59 ~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~-~~g~i~~L~ 137 (845)
+..|..+..++.++...-.....+.....-.-..+-..+ ..++.+-...|+|+++++..+.++....++ ..|++|.|+
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li 296 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKL-LAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-ccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence 457788888888776544321222222111122222334 345667789999999999999999988877 689999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC--CC-CCh--h
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD--PP-PSM--S 212 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~-~~~--~ 212 (845)
.++.++++.++++|+|++++++.+ +++|+.+++.|+ +.|+.++.++ +..++..|+++|+++..... +. +.+ .
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll~s~-~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSK-KDKAKALCEQGV-DILKRLYHSK-NDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHTTCS-CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHHcCC-CHHHHHHHHHHHHHhccccccCccccchhhc
Confidence 999999999999999999998865 889999999885 9999999866 45788999999999975431 22 222 2
Q ss_pred HHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 213 TIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
...++++.|++++.++ |++ ++..|+|+|+||+...+...+...+.|+++.|+.
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~-------------------------v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~ 428 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKD-------------------------IRRWAADGLAYLTLDAECKEKLIEDKASIHALMD 428 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSS-------------------------HHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCCHH-------------------------HHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHH
Confidence 3567789999999987 788 9999999999999887777666667899999999
Q ss_pred hccCCchhhHHHHHHHHHHHhcCCh-----------------------------hhH---HHHhcCCccchhhHhhcCCc
Q psy12605 291 LLSHKEVKVQTASLRAVGNIVTGTD-----------------------------EQT---QVILNCDALSHFPALLTHPK 338 (845)
Q Consensus 291 lL~~~~~~v~~~al~~L~nl~~~~~-----------------------------~~~---~~i~~~~~l~~L~~lL~~~~ 338 (845)
+|++++..++..|+++|+|++.+.+ ..+ +.+++.|++|.|+.++++++
T Consensus 429 LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s 508 (810)
T 3now_A 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES 508 (810)
T ss_dssp HHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred HhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence 9999999999999999999998652 122 67889999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhHHH-HHHcCCh
Q psy12605 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQTQE-VVAAGAV 416 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~-l~~~g~i 416 (845)
+.+++.|+|+|.|++ .+++.+..+++.|++|+|+.++.++ ++..+..|+|+|.+++.+ +++.... ....|++
T Consensus 509 ~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~-----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 509 HNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEG-----TEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp HHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccC-----CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 999999999999997 4577889999999999999999875 688999999999999864 4433210 0124699
Q ss_pred HHHHHhhCCCCH-HHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 417 PLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 495 (845)
Q Consensus 417 ~~Lv~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~ 495 (845)
+.|+++|.++.. ..+..|+++|+|++..++..+..+.+.|+++.|+.++.+.. ..+++.++|+++||+.+..
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~~------ 655 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSED------ 655 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSHH------
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChH------
Confidence 999999986644 44568999999999999999999999999999999998654 5789999999999985431
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhh
Q psy12605 496 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQ 575 (845)
Q Consensus 496 ~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~ 575 (845)
.
T Consensus 656 -------------------------------------------------------------------------------~ 656 (810)
T 3now_A 656 -------------------------------------------------------------------------------V 656 (810)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHH-hCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHH-CCChHHHHHHhhhhhhhhhhhcccCCchhH
Q psy12605 576 TQVIL-NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID-AGLLPKIIANLQKRSCKILNKYLDNNNMVL 653 (845)
Q Consensus 576 ~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~ 653 (845)
...+. ..|.++.|+.++++++..++++|+|+|+|++.+++..++.+++ .|++|.|++++
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL------------------- 717 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI------------------- 717 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH-------------------
T ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH-------------------
Confidence 11222 2577889999999999999999999999999988888999998 89999999998
Q ss_pred HHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHH
Q psy12605 654 HNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAK 733 (845)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 733 (845)
.++++++++.|+|++.|++ .+++++...
T Consensus 718 ---------------------------------------------------~s~d~~vq~~A~~aL~NL~-~~s~e~~~~ 745 (810)
T 3now_A 718 ---------------------------------------------------ANPSPAVQHRGIVIILNMI-NAGEEIAKK 745 (810)
T ss_dssp ---------------------------------------------------TCSSHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred ---------------------------------------------------CCCCHHHHHHHHHHHHHHH-hCCHHHHHH
Confidence 6788999999999999998 467889999
Q ss_pred HHHcCCchHHhhhhccc---cHHHHHHHHHHHHHHHHhhHH
Q psy12605 734 LVQEGVIPPFCDLLSCK---DAQVIQVVLDGINNMLKMADA 771 (845)
Q Consensus 734 l~~~~~i~~L~~~L~~~---d~~~~~~al~~L~~l~~~~~~ 771 (845)
+++.|++++|+.+|+.+ +.++++.|+.+|.++++.|.-
T Consensus 746 l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 746 LFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999765 789999999999999987753
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.1e-43 Score=405.71 Aligned_cols=615 Identities=14% Similarity=0.118 Sum_probs=460.4
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 46 LDMLVVEAAR--KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~--~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
+.+++ +.+. +.+.+.+.+|+.-|..+... +.-.+.+...|++..|.++++...++++...|.++|..+|.++.+.
T Consensus 8 v~~m~-~i~~~~~~~~~~~~~a~~nl~vl~re--~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r 84 (810)
T 3now_A 8 VKQMM-DLTFDLATPIDKRRAAANNLVVLAKE--QTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84 (810)
T ss_dssp HHHHH-HHHHSSCCSSHHHHHHHHHHHHHSSC--HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-HHHcccccCHHHHHHHHhhceeeecc--ccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHH
Confidence 44554 4443 45677889999999887553 3456788899999999999986588999999999999999998888
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcC----CC------------------------------------h
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG----DG------------------------------------P 163 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~----~~------------------------------------~ 163 (845)
...+++.=++|.++.++.+++++....++.++..+-. .. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (810)
T 3now_A 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG 164 (810)
T ss_dssp HHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh
Confidence 8888888899999999988877665555555444320 00 0
Q ss_pred hhHHH-------------------HHhcCChhhHHhhhcC----------CCCHHHHHHH--------------------
Q psy12605 164 QLRDY-------------------VINMGVVPPLLSFIKP----------DIPISFLRNV-------------------- 194 (845)
Q Consensus 164 ~~r~~-------------------i~~~g~i~~Lv~ll~~----------~~~~~~~~~a-------------------- 194 (845)
..|+. ....+++..++..... +.+.+.|..+
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 244 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARF 244 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 01111 1222344444433321 0022344444
Q ss_pred -----------------------HHHHHHhhcCCCCCCC-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHh
Q psy12605 195 -----------------------TWVIVNLCRNKDPPPS-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250 (845)
Q Consensus 195 -----------------------~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (845)
.|++.++..+...... .....|++|.|+.++.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~------------------- 305 (810)
T 3now_A 245 TDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDEL------------------- 305 (810)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHH-------------------
T ss_pred HHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHH-------------------
Confidence 4444444443311111 111346677777777666666
Q ss_pred hhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh-hhHHHHhcCC----
Q psy12605 251 LVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD-EQTQVILNCD---- 325 (845)
Q Consensus 251 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~i~~~~---- 325 (845)
++..|+|++..++.. .+.+..+.+.|+ +.|+.++.+++..++..|+.+|+++....+ +......+.|
T Consensus 306 ------~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 306 ------QQRVACECLIAASSK-KDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp ------HHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred ------HHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 888999999998765 667777878776 999999998888999999999999975322 2111222333
Q ss_pred ccchhhHhhcCC--chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 326 ALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 326 ~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.++.++++|.++ ++++++.|+|+|++++.......+...+.|++|.|++++.+. ++.+++.|+|+|.|++.+.
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~-----d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG-----NQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC-----ChHHHHHHHHHHHHHcCCc
Confidence 356788888887 889999999999999766444444444689999999999874 7899999999999999864
Q ss_pred h-----------------------------Hh---HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12605 404 S-----------------------------AQ---TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451 (845)
Q Consensus 404 ~-----------------------------~~---~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 451 (845)
+ .. .+.+++.|+++.|+.++.++++.+++.|+|+|+|++.+ ++.|..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 2 12 37889999999999999999999999999999999975 569999
Q ss_pred HHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCCh--hHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCch
Q psy12605 452 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM--STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 529 (845)
Q Consensus 452 l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~--~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~ 529 (845)
+.+.|+++.|+.++.+.. ...++.++|+|+||+.+..|...+ ....+++|.|..++.+......
T Consensus 532 Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~------------- 597 (810)
T 3now_A 532 VVQEGGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE------------- 597 (810)
T ss_dssp HHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHH-------------
T ss_pred HHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHH-------------
Confidence 999999999999998654 478999999999999865321111 1123455555555543322111
Q ss_pred hhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhh
Q psy12605 530 ISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609 (845)
Q Consensus 530 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsn 609 (845)
+..++.++.|++.++++..+.+++.|+++.|..++.++++.+++.|+++|+|
T Consensus 598 ----------------------------~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 598 ----------------------------NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp ----------------------------HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1124556666666667777888999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHH-CCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhcccc
Q psy12605 610 ITAGNQAQVQAVID-AGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688 (845)
Q Consensus 610 l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (845)
|+.+++ .+..+++ .|.++.|+.++
T Consensus 650 La~~~~-~~~~~v~~~g~l~~Lv~LL------------------------------------------------------ 674 (810)
T 3now_A 650 LVMSED-VIKMFEGNNDRVKFLALLC------------------------------------------------------ 674 (810)
T ss_dssp HTTSHH-HHHHHHSSSSHHHHHHHGG------------------------------------------------------
T ss_pred HhCChH-HHHHHHhccCcHHHHHHHh------------------------------------------------------
Confidence 998655 4555665 78899999887
Q ss_pred CcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHH-cCCchHHhhhhccccHHHHHHHHHHHHHHHH
Q psy12605 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQ-EGVIPPFCDLLSCKDAQVIQVVLDGINNMLK 767 (845)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~ 767 (845)
.+.+..+|++|+|+|+|++ .+++.+.+.+++ .|++++|+++|.++|.++++.|+++|.|+..
T Consensus 675 ----------------~s~d~~vq~~Aa~ALanLt-~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 675 ----------------EDEDEETATACAGALAIIT-SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp ----------------GCSSHHHHHHHHHHHHHHH-HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ----------------cCCCHHHHHHHHHHHHHHh-CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 5577899999999999999 457888999998 8999999999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHhChHHHHHhhhcCC---CHHHHHHHHHHHHHhcCc
Q psy12605 768 MADAQVETLANMIEECGGLDKIEMLQNHE---NVEIYKLAYDIIERYFSE 814 (845)
Q Consensus 768 ~~~~~~~~~~~~~~e~g~~~~L~~l~~~~---~~~v~~~a~~~l~~~~~~ 814 (845)
..+ .....+.+.|++++|..++... +.++++.|.+.|+.....
T Consensus 738 ~s~----e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 738 AGE----EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp TCH----HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCH----HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 433 2468899999999999997544 788999999999877643
No 7
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=3.7e-40 Score=380.29 Aligned_cols=508 Identities=15% Similarity=0.177 Sum_probs=418.6
Q ss_pred HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-cCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCC
Q psy12605 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~ 161 (845)
.+..|.+|.|+.+|+ ++++.+|..|+.+|.+++.+ .+.+..++. .|+++.|+++|.++ +++++..|+++|++++.+
T Consensus 13 ~~~~~~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 13 ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ----CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhHhhHHHHHHHhC-CCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 456789999999994 77899999999999999975 556666665 48999999999754 899999999999999966
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHh
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 241 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~ 241 (845)
++++..+.+.|+++.|+.+++++ +..++..|+++|.+++.+.+.........|++|.|+.++.+++++
T Consensus 91 -~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~---------- 158 (529)
T 1jdh_A 91 -REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK---------- 158 (529)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH----------
T ss_pred -chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHH----------
Confidence 56999999999999999999887 468999999999999997654444455679999999999988777
Q ss_pred hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-chhhHHHHHHHHHHHhcCChhhHHH
Q psy12605 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-EVKVQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~ 320 (845)
++..++.+|.+++..+++....+.+.|+++.|+.+|.++ ....+..++.+|.+++.. +..+..
T Consensus 159 ---------------~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 222 (529)
T 1jdh_A 159 ---------------FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA 222 (529)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred ---------------HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH
Confidence 888888899999988788888888999999999999665 455777889999999864 566788
Q ss_pred HhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 321 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.+.|+++.|+.++.+.++.++..++|+|.+++.+.+.. ....+++|.|++++.+ .+++++..|+|+|++++
T Consensus 223 ~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-----DDINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999998765432 1124678999999976 48999999999999999
Q ss_pred cCChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChH---HHHHHHhCCChHHHHhccCCCCChhHHH
Q psy12605 401 SGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLR 475 (845)
Q Consensus 401 ~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 475 (845)
.++++.+..+.+.|+++.|++++.+ ++++++..|+++|+|++..++. .+..+.+.|+++.|+.++.+..+..+++
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence 9988999999999999999999975 4479999999999999986543 6788999999999999999877678999
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 476 ~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
.++|+++|++.+..
T Consensus 375 ~a~~~l~nl~~~~~------------------------------------------------------------------ 388 (529)
T 1jdh_A 375 ATVGLIRNLALCPA------------------------------------------------------------------ 388 (529)
T ss_dssp HHHHHHHHHTTSGG------------------------------------------------------------------
T ss_pred HHHHHHHHHhcChh------------------------------------------------------------------
Confidence 99999999985431
Q ss_pred ccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhh
Q psy12605 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635 (845)
Q Consensus 556 ~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~ 635 (845)
....+.+.|+++.|+.++.+++++++++|+|+++|.+...
T Consensus 389 -------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~--------------------- 428 (529)
T 1jdh_A 389 -------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE--------------------- 428 (529)
T ss_dssp -------------------GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBT---------------------
T ss_pred -------------------hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhc---------------------
Confidence 1134556788888888888888999999999999832100
Q ss_pred hhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHH
Q psy12605 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEA 715 (845)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 715 (845)
.....+++..+
T Consensus 429 ---------------------------------------------------------------------~~~~~~i~~~~ 439 (529)
T 1jdh_A 429 ---------------------------------------------------------------------GVRMEEIVEGC 439 (529)
T ss_dssp ---------------------------------------------------------------------TBCHHHHHHHH
T ss_pred ---------------------------------------------------------------------cccHHHHHHHH
Confidence 01112455678
Q ss_pred HHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC
Q psy12605 716 AWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH 795 (845)
Q Consensus 716 ~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~ 795 (845)
+.++++++ .++++...+.+.|++++|+.++.+.+++++..+..+|.++.... .+...+.+.|+++.|..++++
T Consensus 440 ~~al~~L~--~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-----~~~~~i~~~~~~~~L~~l~~~ 512 (529)
T 1jdh_A 440 TGALHILA--RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-----EAAEAIEAEGATAPLTELLHS 512 (529)
T ss_dssp HHHHHHHT--TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH-----HHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHh--cCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH-----HHHHHHHHcCChHHHHHHhcC
Confidence 88999998 46788888999999999999999999999999999999987532 356789999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy12605 796 ENVEIYKLAYDIIERY 811 (845)
Q Consensus 796 ~~~~v~~~a~~~l~~~ 811 (845)
++++++++|.++|.++
T Consensus 513 ~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 513 RNEGVATYAAAVLFRM 528 (529)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999875
No 8
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.1e-39 Score=389.60 Aligned_cols=543 Identities=15% Similarity=0.173 Sum_probs=434.3
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
.+.+++.++ +.|.++++..+..++..+++. .+..+..|.+|.|+.+|. ++++.+|..|+.+|.+++.. .
T Consensus 113 ~~~~i~~lv-~~L~~~~~~~r~~a~~~l~~~--------~~~~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~-~ 181 (780)
T 2z6g_A 113 FDSAHPTNV-QRLAEPSQMLKHAVVNLINYQ--------DDAELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKK-E 181 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTS-H
T ss_pred ccccHHHHH-HHhcCccHHHHHHHHHHHHhh--------hHHHHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCC-C
Confidence 345678899 899999988888888887753 122445899999999995 67899999999999999975 4
Q ss_pred hhHHHHHH-cCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 122 AQTQEVVA-AGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 122 ~~~~~i~~-~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
+.+..+++ .|+++.|+++|.++ +++++..|+++|.+++.+ ++++..+.+.|+++.|+.+++++ +..++..|+++|.
T Consensus 182 ~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 182 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 56666665 48999999999855 899999999999999966 56788899999999999999887 5689999999999
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
+++.+.+.........++++.|+.++.+.+.. ++..++.+|..++..+.+....+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~-------------------------v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------------------------FLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHH-------------------------HHHHHHHHHHHHhcCChHHHHHH
Confidence 99997654444445679999999999987777 78888889998887777777888
Q ss_pred HhcCchhhHHhhccCCc-hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH
Q psy12605 280 IDSGVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
.+.|+++.|+.+|++.+ ...+..++.+|.+++.. +..+..+++.|+++.|+.++.+.+..++..++++|.+++.....
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence 89999999999997665 44667889999999864 55678888999999999999999999999999999999876543
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVW 436 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~ 436 (845)
. ....++++.|++++.+ .++.++..|+++|.+++.++++.+..+++.|+++.|+++|.+. .++++..|++
T Consensus 394 ~---~~~~~~i~~Lv~lL~~-----~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 394 Q---EGMEGLLGTLVQLLGS-----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp C---SCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred h---hhhhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 1 1124578999999986 4899999999999999999989999999999999999999863 3489999999
Q ss_pred HHHHhhcCChH---HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCCh
Q psy12605 437 ALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 513 (845)
Q Consensus 437 ~L~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~ 513 (845)
+|++|+...++ .+..+...|+++.|+.++.......+++.++|+|+|++.+..
T Consensus 466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~------------------------ 521 (780)
T 2z6g_A 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA------------------------ 521 (780)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH------------------------
T ss_pred HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH------------------------
Confidence 99999976543 467888999999999999987767899999999999985331
Q ss_pred hHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhc
Q psy12605 514 SVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLT 593 (845)
Q Consensus 514 ~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 593 (845)
....+.+.|+++.|+.++.
T Consensus 522 -------------------------------------------------------------~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 522 -------------------------------------------------------------NHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp -------------------------------------------------------------HHHHHHHTTHHHHHHHHHH
T ss_pred -------------------------------------------------------------HHHHHHHCCCHHHHHHHHH
Confidence 1134556677888888888
Q ss_pred CCChhHHHHHHHHHhh--hccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHh
Q psy12605 594 HPKEKICKEAVWFLSN--ITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERM 671 (845)
Q Consensus 594 ~~~~~v~~~a~~~Lsn--l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (845)
+.+.+++++++|+++| +..
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~----------------------------------------------------------- 561 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVE----------------------------------------------------------- 561 (780)
T ss_dssp HHHHHHHHTTC------CCST-----------------------------------------------------------
T ss_pred hcchhHHHHHhhccccchhhc-----------------------------------------------------------
Confidence 8888899999998887 211
Q ss_pred hhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhcccc
Q psy12605 672 IYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKD 751 (845)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d 751 (845)
.....+++..++.+|++++ .++++...+.+.|++++|+.+|.+.+
T Consensus 562 ---------------------------------~~~~~~v~~~a~~aL~~La--~~~~~~~~l~~~~~i~~Lv~lL~~~~ 606 (780)
T 2z6g_A 562 ---------------------------------GVRMEEIVEACTGALHILA--RDIHNRIVIRGLNTIPLFVQLLYSPI 606 (780)
T ss_dssp ---------------------------------TCCHHHHHHHHHHHHHHHT--TSHHHHHHHHHTCCHHHHHHGGGCSC
T ss_pred ---------------------------------ccChHHHHHHHHHHHHHHh--cChhhHHHHHHCCcHHHHHHHHcCCC
Confidence 1122457788999999998 46788888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHH--------------------HHHHHHHh
Q psy12605 752 AQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKL--------------------AYDIIERY 811 (845)
Q Consensus 752 ~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~--------------------a~~~l~~~ 811 (845)
+.++..++.+|.++.... .+...|.+.|+++.|..+++++++++++. +.+++.+|
T Consensus 607 ~~v~~~a~~aL~~L~~~~-----~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l 681 (780)
T 2z6g_A 607 ENIQRVAAGVLCELAQDK-----EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 681 (780)
T ss_dssp HHHHHHHHHHHHHHHTSH-----HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCH-----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHH
Confidence 999999999999998542 35688999999999999999999999654 55667777
Q ss_pred cCcc
Q psy12605 812 FSEV 815 (845)
Q Consensus 812 ~~~~ 815 (845)
|..+
T Consensus 682 ~~~~ 685 (780)
T 2z6g_A 682 FRTE 685 (780)
T ss_dssp ----
T ss_pred HhCC
Confidence 7666
No 9
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=379.35 Aligned_cols=511 Identities=15% Similarity=0.184 Sum_probs=424.2
Q ss_pred HHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-cCChHHHHHhhCCC-ChhHHHHHHHHHHHhcC
Q psy12605 83 ALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSP-HSNVCEQAVWALGNIIG 160 (845)
Q Consensus 83 ~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~ 160 (845)
..+..|.+|.|+++|+ ++++.+|..|+.+|.+++... +.+..++. .|+++.|+++|.++ +++++..|+.+|.+++.
T Consensus 9 ~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 9 AELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp ---CTTTHHHHHHHHT-CSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhchHHHHHHHHc-CCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 3467899999999994 778999999999999999864 46666665 48999999999875 89999999999999997
Q ss_pred CChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHH
Q psy12605 161 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSI 240 (845)
Q Consensus 161 ~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l 240 (845)
+ ++.+..+.+.|+++.|+.+++++ +..++..|+++|.+++...+.........+++|.|+.++.+.+++
T Consensus 87 ~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~--------- 155 (644)
T 2z6h_A 87 H-REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK--------- 155 (644)
T ss_dssp S-HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH---------
T ss_pred C-hhhHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHH---------
Confidence 6 56999999999999999999887 568999999999999987644444445679999999999988776
Q ss_pred hhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCc-hhhHHHHHHHHHHHhcCChhhHH
Q psy12605 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQ 319 (845)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~ 319 (845)
++..++.+|.+++..+.+....+.+.|+++.|+.+|.+.+ ..++..++++|.+++.. +..+.
T Consensus 156 ----------------~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~ 218 (644)
T 2z6h_A 156 ----------------FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKP 218 (644)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHH
Confidence 7788888999999877777788889999999999997654 67888999999999864 56688
Q ss_pred HHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 320 ~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
.+++.|+++.|+.++.+.+..++..++|+|.+++...+.. ....++++.|++++.+ .+++++..|+|+|.++
T Consensus 219 ~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~-----~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-----DDINVVTCAAGILSNL 290 (644)
T ss_dssp HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998765331 1123679999999986 4899999999999999
Q ss_pred hcCChHhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCh---HHHHHHHhCCChHHHHhccCCCCChhHH
Q psy12605 400 ASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGP---QLRDYVINMGVVPPLLSFIKPDIPISFL 474 (845)
Q Consensus 400 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~g~l~~L~~ll~~~~~~~~~ 474 (845)
+.++++.+..+.+.|+++.|+.++.+. .++++..|+++|++++...+ ..+..+...|+++.|+++|.+..+..++
T Consensus 291 ~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~ 370 (644)
T 2z6h_A 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHH
T ss_pred HcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHH
Confidence 999889999999999999999999863 37999999999999997544 4566788999999999999987667899
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCC
Q psy12605 475 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGP 554 (845)
Q Consensus 475 ~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 554 (845)
+.++|+++|++.+..
T Consensus 371 ~~a~~~L~nLa~~~~----------------------------------------------------------------- 385 (644)
T 2z6h_A 371 KATVGLIRNLALCPA----------------------------------------------------------------- 385 (644)
T ss_dssp HHHHHHHHHHTTSGG-----------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHH-----------------------------------------------------------------
Confidence 999999999985431
Q ss_pred cccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhh--hccCCHHHHHHHHHCCChHHHHH
Q psy12605 555 MSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN--ITAGNQAQVQAVIDAGLLPKIIA 632 (845)
Q Consensus 555 ~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsn--l~~~~~~~~~~~~~~~~l~~L~~ 632 (845)
..+.+.+.|+++.|+.++.+.+.+++++|+|+++| +..
T Consensus 386 --------------------~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~-------------------- 425 (644)
T 2z6h_A 386 --------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE-------------------- 425 (644)
T ss_dssp --------------------GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CC--------------------
T ss_pred --------------------HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc--------------------
Confidence 11445677888888999988889999999999887 221
Q ss_pred HhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccch
Q psy12605 633 NLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQ 712 (845)
Q Consensus 633 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (845)
...+.+++
T Consensus 426 ------------------------------------------------------------------------~~~~~~v~ 433 (644)
T 2z6h_A 426 ------------------------------------------------------------------------GVRMEEIV 433 (644)
T ss_dssp ------------------------------------------------------------------------SSCHHHHH
T ss_pred ------------------------------------------------------------------------cccHHHHH
Confidence 11234677
Q ss_pred hHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhh
Q psy12605 713 KEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEML 792 (845)
Q Consensus 713 ~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l 792 (845)
..++.+|.+++ .++++...+.+.|++++|+++|.+.+++++..++.+|.++.... .+...+.+.|+++.|..+
T Consensus 434 ~~a~~aL~~La--~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-----~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 434 EGCTGALHILA--RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-----EAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHHHHHHHT--TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH-----HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHh--cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH-----HHHHHHHHcCChhHHHHH
Confidence 78999999998 45677888889999999999999999999999999999998542 256789999999999999
Q ss_pred hcCCCHHHHH------------------H--HHHHHHHhcCcc
Q psy12605 793 QNHENVEIYK------------------L--AYDIIERYFSEV 815 (845)
Q Consensus 793 ~~~~~~~v~~------------------~--a~~~l~~~~~~~ 815 (845)
+++++++++. + +.+++.+||..+
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 9999999844 4 677888898776
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.1e-38 Score=365.62 Aligned_cols=508 Identities=16% Similarity=0.161 Sum_probs=417.5
Q ss_pred hhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
...++.++ ++++++++..+..|+..|.++.... .....++. .|+++.|+++|..+++++++..|+.+|.+++.. +
T Consensus 16 ~~~i~~Lv-~lL~~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~ 91 (529)
T 1jdh_A 16 TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-R 91 (529)
T ss_dssp -CHHHHHH-HHHTCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-H
T ss_pred HhhHHHHH-HHhCCCCHHHHHHHHHHHHHHHcCC--ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-c
Confidence 45688888 8999999999999999999987643 23445554 489999999997666889999999999999875 7
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+++..+.+.|++|.|+++|++++++++..|+++|++++.+++..+..+.+.|+++.|+.++.++ +..++..++.+|.++
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999988778899999999999999999886 557888999999999
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+.+++.........++++.|+.++++.+++. ....++.+|.+++... +....+.+
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~------------------------~~~~a~~~L~~l~~~~-~~~~~~~~ 225 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEK------------------------LLWTTSRVLKVLSVCS-SNKPAIVE 225 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH------------------------HHHHHHHHHHHHTTST-THHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHH------------------------HHHHHHHHHHHHhcCc-ccHHHHHH
Confidence 9865333344455689999999998766551 6667888899998754 45677779
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.|+++.|+.++.++++.++..++++|++++...+.. ....++++.|++++.+.+++++..|+++|++++.++++..+
T Consensus 226 ~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 302 (529)
T 1jdh_A 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 302 (529)
T ss_dssp TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999765332 12237899999999999999999999999999998888889
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---hHHHHHHcCChHHHHHhhCCCC-HHHHHHHHHH
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA---QTQEVVAAGAVPLFLRLLMSPH-SNVCEQAVWA 437 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~-~~v~~~a~~~ 437 (845)
.+.+.|+++.|++++.+.+ +++.++..|+++|++++.++++ .+..+.+.|+++.|++++.+++ +.++..++|+
T Consensus 303 ~~~~~~~v~~L~~ll~~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 303 MVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHTTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHccC---CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHH
Confidence 9999999999999998753 3589999999999999986543 4678899999999999999887 5999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI 517 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~ 517 (845)
|+|++.... .+..+.+.|+++.|+.++.+ .+.++++.++|+++|.+....
T Consensus 380 l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~n~~~~~~---------------------------- 429 (529)
T 1jdh_A 380 IRNLALCPA-NHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEG---------------------------- 429 (529)
T ss_dssp HHHHTTSGG-GHHHHHHTTHHHHHHHHHHH-HHHHHC-----------CBTT----------------------------
T ss_pred HHHHhcChh-hhHHHHHcCCHHHHHHHHHH-HhHHHHHHHhcccCchhhhcc----------------------------
Confidence 999998644 56788899999999999974 335677788888877331110
Q ss_pred HHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCCh
Q psy12605 518 YLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE 597 (845)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 597 (845)
....
T Consensus 430 ----------------------------------------------------------------------------~~~~ 433 (529)
T 1jdh_A 430 ----------------------------------------------------------------------------VRME 433 (529)
T ss_dssp ----------------------------------------------------------------------------BCHH
T ss_pred ----------------------------------------------------------------------------ccHH
Confidence 0012
Q ss_pred hHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccc
Q psy12605 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQ 677 (845)
Q Consensus 598 ~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (845)
.++..++.+|.+++. ++.....+.+.|+++.|+.++
T Consensus 434 ~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll------------------------------------------- 469 (529)
T 1jdh_A 434 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLL------------------------------------------- 469 (529)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGG-------------------------------------------
T ss_pred HHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHH-------------------------------------------
Confidence 345567888888876 456667788999999999988
Q ss_pred cCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHH
Q psy12605 678 KTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQV 757 (845)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~ 757 (845)
.+.++++++.+++++++++ .+++....+.+.|+++.|..+++++|++++..
T Consensus 470 ---------------------------~~~~~~v~~~a~~~l~~l~--~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~ 520 (529)
T 1jdh_A 470 ---------------------------YSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520 (529)
T ss_dssp ---------------------------GCSCHHHHHHHHHHHHHHT--TSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred ---------------------------cCCchHHHHHHHHHHHHHh--cCHHHHHHHHHcCChHHHHHHhcCCCHHHHHH
Confidence 5677899999999999998 46778888889999999999999999999999
Q ss_pred HHHHHHHH
Q psy12605 758 VLDGINNM 765 (845)
Q Consensus 758 al~~L~~l 765 (845)
|.++|.+|
T Consensus 521 a~~aL~~l 528 (529)
T 1jdh_A 521 AAAVLFRM 528 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999876
No 11
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=373.11 Aligned_cols=539 Identities=15% Similarity=0.165 Sum_probs=435.0
Q ss_pred hhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
...++.++ ++|+++++.++..|+..|.++.... .....++. .|+++.|++.|..+++++++..|+.+|.+++.. .
T Consensus 13 ~g~i~~Lv-~lL~~~~~~vr~~A~~~L~~La~~~--~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~ 88 (644)
T 2z6h_A 13 TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-R 88 (644)
T ss_dssp TTTHHHHH-HHHTCSCHHHHHHHHHHHHHHHTST--THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-H
T ss_pred hchHHHHH-HHHcCCCHHHHHHHHHHHHHHHCCC--hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-h
Confidence 45688899 8999999999999999999987654 24455554 489999999997556899999999999999875 6
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+++..+.+.|++|.|+++|+++++.++..|+++|++++.+.+..+..+.+.|+++.|+.++.++ +..++..++.+|.++
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999988777888899999999999999887 447888888899999
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+.+.+.........++++.|+.++.+.+.+ .++..++.+|.+++.. .+....+++
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~------------------------~~~~~a~~~L~nLs~~-~~~~~~l~~ 222 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTYE------------------------KLLWTTSRVLKVLSVC-SSNKPAIVE 222 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCCH------------------------HHHHHHHHHHHHHTTC-TTHHHHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCChH------------------------HHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 975533334445678999999999876543 1677889999999865 445677789
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.|+++.|+.++.+++..++..++++|++++...... ....++++.|+.++.+.++.++..|+|+|++++.+.+..++
T Consensus 223 ~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~ 299 (644)
T 2z6h_A 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299 (644)
T ss_dssp TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999998764331 12237899999999999999999999999999998888889
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---hHHHHHHcCChHHHHHhhCCCC-HHHHHHHHHH
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA---QTQEVVAAGAVPLFLRLLMSPH-SNVCEQAVWA 437 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~-~~v~~~a~~~ 437 (845)
.+.+.|+++.|++++.+.+ +.+.++..|+++|++++..+++ .+..+.+.|+++.|+++|.+++ +.++..|+|+
T Consensus 300 ~v~~~g~v~~Lv~lL~~~~---~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 300 MVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp HHHHTTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHccC---CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 9999999999999998752 2379999999999999976442 3455888999999999999875 6999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH--hhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN--LCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n--L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
|+|++.... .+..+.+.|+++.|+.++.... .++++.++|+++| +..+
T Consensus 377 L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~-~~vr~~a~~al~n~~~~~~---------------------------- 426 (644)
T 2z6h_A 377 IRNLALCPA-NHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEG---------------------------- 426 (644)
T ss_dssp HHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHH-HHHTTC----------CCS----------------------------
T ss_pred HHHHccCHH-HHHHHHHcCCHHHHHHHHhccc-hhhhhHhhhccccchhccc----------------------------
Confidence 999998654 4588889999999999886432 2455555665444 1100
Q ss_pred HHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCC
Q psy12605 516 SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595 (845)
Q Consensus 516 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~ 595 (845)
..
T Consensus 427 ------------------------------------------------------------------------------~~ 428 (644)
T 2z6h_A 427 ------------------------------------------------------------------------------VR 428 (644)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 02
Q ss_pred ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhc
Q psy12605 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSS 675 (845)
Q Consensus 596 ~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (845)
+..++..++.+|.+++.. +.....+.+.|+++.|++++
T Consensus 429 ~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL----------------------------------------- 466 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLL----------------------------------------- 466 (644)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHT-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHH-----------------------------------------
Confidence 346778899999999864 46667788999999999988
Q ss_pred cccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHH
Q psy12605 676 FQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVI 755 (845)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~ 755 (845)
.+.++++++.|+++|++++ .+++....+.+.|+++.|+.++++++++++
T Consensus 467 -----------------------------~~~~~~v~~~a~~aL~~l~--~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 467 -----------------------------YSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp -----------------------------TCSCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHHHHHHH--cCHHHHHHHHHcCChhHHHHHHcCCCHHHH
Confidence 5677889999999999998 467777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHH
Q psy12605 756 QVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYD 806 (845)
Q Consensus 756 ~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~ 806 (845)
.+|..+|.+|....+.. |.+.+ +++.+..+..+++. .|..|..
T Consensus 516 ~~A~~aL~~l~~~~~~~---~~~~~----~~~il~~~~~~~~~-~w~~~~~ 558 (644)
T 2z6h_A 516 TYAAAVLFRMSEDKPQD---YKKRL----SVELTSSLFRTEPM-AWNETAD 558 (644)
T ss_dssp HHHHHHHHHHTTTSCHH---HHHHH----HHHHHHHHSCCSCG-GGC----
T ss_pred HHHHHHHHHHhccCcHh---hhccc----chHHHHHHHhCCCc-ccccccc
Confidence 99999999998766432 32222 36777777766654 4444443
No 12
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.4e-38 Score=377.94 Aligned_cols=540 Identities=15% Similarity=0.166 Sum_probs=429.3
Q ss_pred hhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
...++.++ .+|.++++.++..|+..|.++.... .....+.. .|+++.|+++|+.+.++.+|..|+.+|.+++.. .
T Consensus 149 ~g~ip~Lv-~lL~~~d~~vr~~A~~~L~~L~~~~--~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~ 224 (780)
T 2z6g_A 149 TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-R 224 (780)
T ss_dssp HHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHTSH--HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-H
T ss_pred hCCHHHHH-HHHCCCCHHHHHHHHHHHHHHhCCC--hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-c
Confidence 45688888 8999999999999999999987643 23445554 489999999997666899999999999999875 6
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+++..+.+.|++|.|+.+|+++++.++..|+++|++|+.+.+..+..+.+.|+++.|+.++.++ +..++..++.+|.++
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999988788899999999999999999876 557899999999999
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+...+.........++++.|+.++++.+++. ....++.+|.+++.. ......+++
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~------------------------~~~~a~~aL~~Ls~~-~~~~~~i~~ 358 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEK------------------------LLWTTSRVLKVLSVC-SSNKPAIVE 358 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHH------------------------HHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHH------------------------HHHHHHHHHHHhhcC-hHHHHHHHH
Confidence 9754322233344588999999998776551 556778888888864 445677789
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.|+++.|+.++.+++..++..|+.+|.+++...... ....++++.|+.++.+.++.++..|+++|++++.+.+..+.
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~ 435 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999765331 12236889999999999999999999999999999888889
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---hHHHHHHcCChHHHHHhhCCCCH-HHHHHHHHH
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA---QTQEVVAAGAVPLFLRLLMSPHS-NVCEQAVWA 437 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~~-~v~~~a~~~ 437 (845)
.+++.++++.|++++.+.+ +...++..|+++|++|+..+++ .+..+...|+++.|+++|.+++. .++..|+|+
T Consensus 436 ~i~~~g~i~~Lv~lL~~~~---~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 436 MVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHTTTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999999999999998752 2348999999999999876544 35678899999999999998875 999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH--hhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN--LCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n--L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
|+|++.. +..+..+.+.|+++.|+.++.... .++++.++|+++| +..+
T Consensus 513 L~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~aa~al~nq~~~~~---------------------------- 562 (780)
T 2z6g_A 513 IRNLALC-PANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEG---------------------------- 562 (780)
T ss_dssp HHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHH-HHHHHTTC------CCSTT----------------------------
T ss_pred HHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcc-hhHHHHHhhccccchhhcc----------------------------
Confidence 9999975 455678889999999999886422 2445555555444 1100
Q ss_pred HHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCC
Q psy12605 516 SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595 (845)
Q Consensus 516 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~ 595 (845)
..
T Consensus 563 ------------------------------------------------------------------------------~~ 564 (780)
T 2z6g_A 563 ------------------------------------------------------------------------------VR 564 (780)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cC
Confidence 01
Q ss_pred ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhc
Q psy12605 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSS 675 (845)
Q Consensus 596 ~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (845)
.++++..++.+|.+++. ++.....+.+.|+++.|++++
T Consensus 565 ~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL----------------------------------------- 602 (780)
T 2z6g_A 565 MEEIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLL----------------------------------------- 602 (780)
T ss_dssp HHHHHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGG-----------------------------------------
T ss_pred hHHHHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHH-----------------------------------------
Confidence 24577889999999985 466667788999999999988
Q ss_pred cccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHH
Q psy12605 676 FQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVI 755 (845)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~ 755 (845)
.+.+++++..|+.+|++++ .+++....+.+.|+++.|+.++++.+++++
T Consensus 603 -----------------------------~~~~~~v~~~a~~aL~~L~--~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr 651 (780)
T 2z6g_A 603 -----------------------------YSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVA 651 (780)
T ss_dssp -----------------------------GCSCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 5677899999999999997 567788888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHH
Q psy12605 756 QVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDI 807 (845)
Q Consensus 756 ~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~ 807 (845)
..|+++|.++....+.. |... .+++.+..+..+++. .|..|..+
T Consensus 652 ~~A~~aL~~l~~~~~~~---~~~~----l~~~ll~~l~~~~~~-~w~~~~~~ 695 (780)
T 2z6g_A 652 TYAAAVLFRMSEDKPQD---YKKR----LSVELTSSLFRTEPM-TWNETGDL 695 (780)
T ss_dssp HHHHHHHHHHHTTSCTT---HHHH----HHHHHHHHC---------------
T ss_pred HHHHHHHHHHHcCChHh---hhcc----ccHHHHHHHHhCCCc-ccccCccc
Confidence 99999999999866532 2221 266777887766663 66666555
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=7.8e-37 Score=344.92 Aligned_cols=410 Identities=44% Similarity=0.672 Sum_probs=366.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc-CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
++.++ +.++++++..+..|+..|+++++...++..+.++.. |++|.|+++|+.++++.+|..|+++|.+++.+++++.
T Consensus 22 l~~l~-~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMI-EMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHH-HHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 78888 899999999999999999999875445566778888 9999999999654489999999999999999888888
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
..+++.|++|.|+++|+++++++++.|+++|++++.++++.++.+.+.|+++.++.++.++.+..+++.++|+|.+++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999998889999999999999999999755779999999999999987
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
..+........+++|.|+.++.++++. ++..++|+|.+++....+....+.+.|+
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~-------------------------v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 235 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTD-------------------------VLADACWALSYLSDGPNDKIQAVIDAGV 235 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHH-------------------------HHHHHHHHHHHHTSSSHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHH-------------------------HHHHHHHHHHHHHCCCcHHHHHHHHcCc
Confidence 644444445589999999999988888 9999999999999988777788889999
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++++.+|..|+++|++++.+.+...+.++
T Consensus 236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 315 (450)
T 2jdq_A 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999998888888888999999999999999999999999999999988888888889
Q ss_pred hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+.++++.|+.++.+. ++.++..|+|+|++++.+ +++..+.+++.|+++.|++++.++++.++..++++|.+++.
T Consensus 316 ~~~~l~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 316 DANIFPALISILQTA-----EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HTTHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999874 789999999999999975 67788888899999999999999999999999999999987
Q ss_pred CCh-----------HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 444 DGP-----------QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 444 ~~~-----------~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
..+ .+...+.+.|+++.|..+..+ .+.++.+.+..++.++...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 391 LGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSH-ENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCH-HHHHHHHHHHHHHHHHHCC
T ss_pred hchhhhhccccchhHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHCCc
Confidence 543 245678888999998887654 3457788888888887743
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.3e-37 Score=347.92 Aligned_cols=418 Identities=41% Similarity=0.684 Sum_probs=367.0
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhc-CChHHHHHHHhc-CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDA-GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~l~~~-~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.++.+++.+.++++.+|..|+.+|.++.. ...+..+.+++. ++++.|++++.+. +++.++..|+++|.+++.++
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~----~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK----ENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT----TCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC----CCHHHHHHHHHHHHHHhcCC
Confidence 47889999999999999999999999854 222233556777 9999999999875 37899999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
++....+++.|+++.|++++.+++++++..|+++|++++.+++..++.+.+.|+++.|+.++.++.+.++++.++|++++
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999976778999999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
++.+..+......+.++++.+..++.+.|+.+... +| +.+++.........+.+.++++.++.++.+++. .++..+
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a 254 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY--KVVSPA 254 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCH--HHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCch--hHHHHH
Confidence 99876444555566889999999999999888765 67 999988766666667778999999999986554 445568
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
+.+++++..+++...+.+.+.|+++.|..+++++++.+++.|+|+|+|++.+++...+.+++.|++|.|++++
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l------- 327 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL------- 327 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-------
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-------
Confidence 8999999999998888899999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHh
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISN 721 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 721 (845)
.+.++++|.+|+|+|+|
T Consensus 328 ---------------------------------------------------------------~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 328 ---------------------------------------------------------------QTAEFRTRKEAAWAITN 344 (450)
T ss_dssp ---------------------------------------------------------------HHSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------hcCCHHHHHHHHHHHHH
Confidence 34567899999999999
Q ss_pred hcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHhChHHHHHhhhc
Q psy12605 722 LTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQV-------ETLANMIEECGGLDKIEMLQN 794 (845)
Q Consensus 722 l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~-------~~~~~~~~e~g~~~~L~~l~~ 794 (845)
++..++++....+++.|+++.|+++|+..+++++..++++|.+++..++... ++|...|.+.|+++.|..|++
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 424 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQS 424 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHc
Confidence 9966688889999999999999999999999999999999999998766431 368899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcccCCC
Q psy12605 795 HENVEIYKLAYDIIERYFSEVEDED 819 (845)
Q Consensus 795 ~~~~~v~~~a~~~l~~~~~~~~~~~ 819 (845)
+++.++++.|..+|++||..++|+|
T Consensus 425 ~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 425 HENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----
T ss_pred CCCHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999997776654
No 15
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=336.72 Aligned_cols=364 Identities=17% Similarity=0.189 Sum_probs=298.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccH-HHHHhcCCHHHHHHhhccCCC-----------hhHHHHHHHH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERSDR-----------PNLQFEAAWA 112 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~-----------~~i~~~a~~~ 112 (845)
.++.++ .++.++|+.. .++++++...++.. ..++++|.+|.||++|+.++. ++++..|+|+
T Consensus 33 ~~~~l~-~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~a 105 (458)
T 3nmz_A 33 MVYSLL-SMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105 (458)
T ss_dssp -------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHH
T ss_pred HHHHHH-HHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHH
Confidence 367778 8888888873 44444444444445 778899999999999975433 7999999999
Q ss_pred HHHHhcCChhhHHHHHHcCCh----------HHHHHhhCCCC--hh-----HHH-------HHHHHHHHhcCCChhhHHH
Q psy12605 113 LTNIASGTSAQTQEVVAAGAV----------PLFLRLLMSPH--SN-----VCE-------QAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 113 L~~la~~~~~~~~~i~~~g~i----------~~L~~lL~s~~--~~-----v~~-------~a~~~L~nla~~~~~~r~~ 168 (845)
|++|+.++++......+.|++ +.+++++.++. .+ +++ +|+|+|+|++.+ +++|+.
T Consensus 106 l~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~ 184 (458)
T 3nmz_A 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA 184 (458)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH
Confidence 999999999999998888888 77888887752 22 555 999999999855 889999
Q ss_pred HHhcCChhhHHhhhcC----------CCCHHHHHHHHHHHHHhhcCCCCCCChh-HHhhHHHHHHhhcccCCchhhHHHH
Q psy12605 169 VINMGVVPPLLSFIKP----------DIPISFLRNVTWVIVNLCRNKDPPPSMS-TIIELLPALNILIHHHDTSVSIYLW 237 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~~~~~~ 237 (845)
+.+.|++++|+.++.. ..+..+++.|+|+|.|||.+.+...... ...|++|.|+.++.+++++
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~------ 258 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED------ 258 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHH------
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHH------
Confidence 9999999999999942 1235789999999999998874333222 2357799999999998888
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCCh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTD 315 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~ 315 (845)
++..|+|+|.+|+.. +.+.+..+.+.|+++.|+.+| .++++.++..|+++|+||+.+++
T Consensus 259 -------------------v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 259 -------------------LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp -------------------HHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred -------------------HHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence 999999999999985 556778888999999999975 66788999999999999998666
Q ss_pred hhHHHHh-cCCccchhhHhhcCCch----hhHHHHHHHHHHhhc---CChHHHHHHHhcCChHHHHHHhhhcccccCChh
Q psy12605 316 EQTQVIL-NCDALSHFPALLTHPKE----KICKEAVWFLSNITA---GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPN 387 (845)
Q Consensus 316 ~~~~~i~-~~~~l~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~ 387 (845)
+.+..+. ..|+++.|+.+|.+.++ ++++.|+|+|+|++. ..++.++.+.+.|+++.|+.+|.++ +..
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-----~~~ 394 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-----SLT 394 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-----CHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-----ChH
Confidence 6666666 78999999999987654 489999999999987 7888889999999999999999874 788
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 388 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 388 v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
++.+|+|+|.|++.++++.+..+++.|+++.|+.++.++++.+++.|+++|.||+.+++
T Consensus 395 v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999899999999999999999999999999999999999999998764
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.7e-34 Score=329.08 Aligned_cols=366 Identities=34% Similarity=0.577 Sum_probs=324.1
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.++.+++.+.+.|.+.+..|+..++.+... ..+.++.+++.|++|.|+++|... +++.+|.+|+|+|+||+++++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~----~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT----TCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC----CCHHHHHHHHHHHHHHhcCCH
Confidence 478899999999999999999999987543 334568899999999999999875 478999999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC----ChhHHHHHHHH
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWV 480 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~----~~~~~~~~~~~ 480 (845)
+.++.+++.|+++.|+++|.++++++++.|+|+|+||+.+++..|+.+.+.|+++.|+.++.... ....++.++|+
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998544 24678999999
Q ss_pred HHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc
Q psy12605 481 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558 (845)
Q Consensus 481 l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 558 (845)
++|++++..+......+.+++|.|..++.+.++++... || +.+|+..+..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~---------------------------- 265 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE---------------------------- 265 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH----------------------------
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh----------------------------
Confidence 99999999888888889999999999999999988765 66 7776654433
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRS 638 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 638 (845)
..+.+.+.|+++.|+.++.++++.++..++++|+|++.+++...+.+++.|+++.|+.++
T Consensus 266 ----------------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL---- 325 (510)
T 3ul1_B 266 ----------------RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL---- 325 (510)
T ss_dssp ----------------HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT----
T ss_pred ----------------hHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh----
Confidence 334566778888888888999999999999999999999999999999999999988877
Q ss_pred hhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHH
Q psy12605 639 CKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWA 718 (845)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 718 (845)
.+.++.++++|+|+
T Consensus 326 ------------------------------------------------------------------~~~~~~v~~~A~~a 339 (510)
T 3ul1_B 326 ------------------------------------------------------------------TNPKTNIQKEATWT 339 (510)
T ss_dssp ------------------------------------------------------------------TCSSHHHHHHHHHH
T ss_pred ------------------------------------------------------------------cCCCHHHHHHHHHH
Confidence 56778999999999
Q ss_pred HHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH
Q psy12605 719 ISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV 798 (845)
Q Consensus 719 l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~ 798 (845)
|+|++ .+++++...+.+.|+++.|+.+|.+.+.+++..|.++|.++...+... ....+.+.|+++.|..|+.+++.
T Consensus 340 L~nl~-a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~---~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 340 MSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE---QIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHT-TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHH-cCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHH---HHHHHHHCCCHHHHHHHhcCCCH
Confidence 99999 678899999999999999999999999999999999999999765432 35668899999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy12605 799 EIYKLAYDIIERYFS 813 (845)
Q Consensus 799 ~v~~~a~~~l~~~~~ 813 (845)
++...+.+.|.+++.
T Consensus 416 ~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 416 KIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888877653
No 17
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=8.3e-34 Score=325.41 Aligned_cols=366 Identities=34% Similarity=0.574 Sum_probs=325.4
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhc-CChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.++.+++.+.+.+++.+..|+..+.++.. ...+.++.+++.|++|.|+++|... +++.++.+|+|+|+|++.+++
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~----~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT----TCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCCH
Confidence 56788999999999999999999998754 3344568899999999999999875 578999999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC----ChhHHHHHHHH
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWV 480 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~----~~~~~~~~~~~ 480 (845)
+.+..+++.|+++.|+.++.++++++++.|+|+|+||+.+++.+|+.+.+.|+++.|+.++.... ...+++.++|+
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998544 24678999999
Q ss_pred HHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc
Q psy12605 481 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558 (845)
Q Consensus 481 l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 558 (845)
++|+|++..+......+.+++|.|..++.+.++++... || +++++..+..
T Consensus 233 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~---------------------------- 284 (529)
T 3tpo_A 233 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE---------------------------- 284 (529)
T ss_dssp HHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH----------------------------
T ss_pred HHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh----------------------------
Confidence 99999999888888889999999999999999998765 77 7777764433
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRS 638 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 638 (845)
..+.+.+.|+++.|+.++.++++.++..++++|+|++.+++.....+++.|+++.|+.++
T Consensus 285 ----------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL---- 344 (529)
T 3tpo_A 285 ----------------RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL---- 344 (529)
T ss_dssp ----------------HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT----
T ss_pred ----------------hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH----
Confidence 334566778888888888899999999999999999999999999999999999999988
Q ss_pred hhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHH
Q psy12605 639 CKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWA 718 (845)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 718 (845)
.+.++.++++|+|+
T Consensus 345 ------------------------------------------------------------------~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 345 ------------------------------------------------------------------TNPKTNIQKEATWT 358 (529)
T ss_dssp ------------------------------------------------------------------TCSSHHHHHHHHHH
T ss_pred ------------------------------------------------------------------cCCCHHHHHHHHHH
Confidence 56778999999999
Q ss_pred HHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH
Q psy12605 719 ISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV 798 (845)
Q Consensus 719 l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~ 798 (845)
|+|++ .+++++...+.+.|++++|+.+|.+.+.+++..|+++|.++...+... ....+.+.|+++.|..|+.+++.
T Consensus 359 L~nl~-~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~---~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 359 MSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE---QIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHH-TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH---HHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHh-cccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH---HHHHHHHCcCHHHHHHHhcCCCH
Confidence 99999 678899999999999999999999999999999999999999765432 35668899999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy12605 799 EIYKLAYDIIERYFS 813 (845)
Q Consensus 799 ~v~~~a~~~l~~~~~ 813 (845)
++...+.+.|.+++.
T Consensus 435 ~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 435 KIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888887653
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.5e-34 Score=324.48 Aligned_cols=385 Identities=18% Similarity=0.190 Sum_probs=315.4
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG- 119 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~- 119 (845)
+.+.+++.+| ++|.++++..+..|+.+|++++... +.....+++.|+||.||++| .++++.+|..|+++|.+|+.+
T Consensus 45 ~~~~~i~~LV-~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 45 WRQPELPEVI-AMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSS
T ss_pred cccccHHHHH-HHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccC
Confidence 3456799999 9999999999999999999987643 45678899999999999999 478899999999999999985
Q ss_pred ChhhHHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc---------------
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--------------- 183 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--------------- 183 (845)
+++++..+++.|+||+|+++|.+ ++.++++.|+++|+||+. +++++..+.+ ++++.|++++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC--------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccc
Confidence 68999999999999999999997 578999999999999996 5789999886 57999999871
Q ss_pred --CCCCHHHHHHHHHHHHHhhcCCCC-CCChhHHhhHHHHHHhhccc------CCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 184 --PDIPISFLRNVTWVIVNLCRNKDP-PPSMSTIIELLPALNILIHH------HDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 184 --~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
+..+..++.+|+++|.||+...+. ...+....|+++.|+.++.+ .+..
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~----------------------- 256 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK----------------------- 256 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCH-----------------------
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHH-----------------------
Confidence 122468999999999999986633 22233335778899999874 2344
Q ss_pred HHHHHHHHHHHHHhhcCCh-------------------------hhHHHHHhcCchhhHHhhcc-CCchhhHHHHHHHHH
Q psy12605 255 MKILVDTVWALSYLTDGGN-------------------------DQIQMVIDSGVVPSLIPLLS-HKEVKVQTASLRAVG 308 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~~-------------------------~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~ 308 (845)
.++.|+|+|.+|+.... ..++.+.+.++++.|+.+|. +.++.++++|+++|.
T Consensus 257 --~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 257 --LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334 (584)
T ss_dssp --HHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 88899999999886521 11222334455677888884 567999999999999
Q ss_pred HHhcCCh----hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc--
Q psy12605 309 NIVTGTD----EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI-- 382 (845)
Q Consensus 309 nl~~~~~----~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~-- 382 (845)
|++.+.. ..+..+.+.++++.|+.+|.++++.+++.|+|+|+|++.+.. . +.++..+++|.|+++|.+....
T Consensus 335 nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~ 412 (584)
T 3l6x_A 335 NLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSS 412 (584)
T ss_dssp HHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGG
T ss_pred HHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCccccc
Confidence 9998752 334456677999999999999999999999999999988754 3 3455789999999999875210
Q ss_pred -cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCChHHHHHHHhCCCh
Q psy12605 383 -VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 458 (845)
Q Consensus 383 -~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 458 (845)
....++...|+++|.|++.++++..+.+.+.|+++.|+.++.+. .+.+++.|.++|+++..+ .+.+..+.+.|.=
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~-~elr~~~kk~G~~ 490 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY-KELRKPLEKEGWK 490 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS-HHHHHHHHTTTCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC-HHHHHHHHHcCCC
Confidence 01467889999999999999999999999999999999999986 889999999999999984 5678888877653
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=6.2e-34 Score=319.45 Aligned_cols=368 Identities=17% Similarity=0.182 Sum_probs=305.0
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-Chh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQ 164 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~ 164 (845)
..+.+|.||++|. ++++.+|..|+++|.+++.++.+++..+++.|+||+|+++|+++++++++.|+++|+||+.. +++
T Consensus 46 ~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 5678999999994 67899999999999999998899999999999999999999999999999999999999985 689
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-----------------
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH----------------- 227 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----------------- 227 (845)
++..+++.|+|+.|+.+|.+..+..+++.++++|.+|+...++.. ....+++|.|++++..
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~--~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH--HHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH--HHHhccHHHHHHHHhcccccccccccccccccc
Confidence 999999999999999999875567899999999999998653322 2335789999998721
Q ss_pred -CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhccC------Cchhh
Q psy12605 228 -HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLLSH------KEVKV 299 (845)
Q Consensus 228 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~------~~~~v 299 (845)
.+++ ++..|.++|.+|+..+.+.++.+++. |+++.|+.+|.+ .+...
T Consensus 203 ~~d~~-------------------------V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~ 257 (584)
T 3l6x_A 203 IEWES-------------------------VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257 (584)
T ss_dssp CCCHH-------------------------HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHH
T ss_pred cccHH-------------------------HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHH
Confidence 1223 89999999999999887767777775 667899999964 46779
Q ss_pred HHHHHHHHHHHhcCChhh-------------------------HHHHhcCCccchhhHhhc-CCchhhHHHHHHHHHHhh
Q psy12605 300 QTASLRAVGNIVTGTDEQ-------------------------TQVILNCDALSHFPALLT-HPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 300 ~~~al~~L~nl~~~~~~~-------------------------~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~ 353 (845)
++.|+.+|.||+...+.. .+.+.+.++++.++.+|. +.++.+++.|+|+|.|++
T Consensus 258 ~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp HHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 999999999998652110 011112234456677884 567999999999999998
Q ss_pred cCChH----HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC---
Q psy12605 354 AGNQA----QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--- 426 (845)
Q Consensus 354 ~~~~~----~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--- 426 (845)
.+... ....+.+.+++|.|+++|... +..++..|+|+|.|++.+.. .+ .++..|+++.|+++|.++
T Consensus 338 ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-----~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 338 AGRWTYGRYIRSALRQEKALSAIADLLTNE-----HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp SSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCS
T ss_pred cCCccccHHHHHHHHHcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCccc
Confidence 87522 222334578899999999874 78999999999999998664 33 345889999999999986
Q ss_pred -----CHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCC-CChhHHHHHHHHHHHhhcCC
Q psy12605 427 -----HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 427 -----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.+++..|+++|+|++..++..+..+.+.|+++.|+.++.+. .+....+.++|+|++|+.++
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 468899999999999999999999999999999999999875 56789999999999998655
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.7e-34 Score=322.27 Aligned_cols=369 Identities=15% Similarity=0.179 Sum_probs=301.6
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+++.++ .+|.+++++.+..|+.+|++++..+ +.....+.+.|++|.|+++|+ ++++.++..|+++|++|+.+++++
T Consensus 2 ~~l~~lv-~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 2 LTIPKAV-QYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CCHHHHH-HHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CCHHHHH-HHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3688999 8999999999999999999987543 334568899999999999995 688999999999999999988999
Q ss_pred HHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc--------CC-------CC
Q psy12605 124 TQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--------PD-------IP 187 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--------~~-------~~ 187 (845)
+..+++.|++|.|+++|. ++++++++.|+|+|+||+.+ +++|..+.+ |++|.|+.++. ++ .+
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 999999999999999999 88999999999999999987 779999999 99999999993 22 24
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhHHh-hHHHHHHhhccc------CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHH
Q psy12605 188 ISFLRNVTWVIVNLCRNKDPPPSMSTII-ELLPALNILIHH------HDTSVSIYLWLSIIEKNPQISKILVSKMKILVD 260 (845)
Q Consensus 188 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (845)
.++++.|+|+|.|||.+. ......... |++|.|+.++.+ .+.. +++.
T Consensus 157 ~~v~~~a~~aL~nLs~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~-------------------------~~e~ 210 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-------------------------SVEN 210 (457)
T ss_dssp HHHHHHHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCT-------------------------THHH
T ss_pred HHHHHHHHHHHHHHccCH-HHHHHHHHcCCCHHHHHHHHHhhccccCCchH-------------------------HHHH
Confidence 578889999999999873 222223333 999999999985 3344 3444
Q ss_pred HHHHHHHhhcC--------------------------------------------------ChhhHHHHHhcCchhhHHh
Q psy12605 261 TVWALSYLTDG--------------------------------------------------GNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 261 a~~~L~~l~~~--------------------------------------------------~~~~~~~~~~~g~i~~Lv~ 290 (845)
++++|.+++.. .+...+.+.+.|+++.|+.
T Consensus 211 a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 290 (457)
T 1xm9_A 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290 (457)
T ss_dssp HHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHH
T ss_pred HHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHH
Confidence 44444444310 1123345567788899999
Q ss_pred hccC-CchhhHHHHHHHHHHHhcCChhh-----HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 291 LLSH-KEVKVQTASLRAVGNIVTGTDEQ-----TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 291 lL~~-~~~~v~~~al~~L~nl~~~~~~~-----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
+|.+ +++.++++|+++|+|++.++... +..+.+.|++|.|+++|.+++.++++.|+|+|+|++.+. .. +.++
T Consensus 291 lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-~~-~~~i 368 (457)
T 1xm9_A 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LL-HRVM 368 (457)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GG-HHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-HH-HHHH
Confidence 9954 46899999999999999876432 334457899999999999999999999999999997753 33 4556
Q ss_pred hcCChHHHHHHhhhccccc-CChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHhh
Q psy12605 365 DAGLLPKIIANLQKVGRIV-LRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNII 442 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~nl~ 442 (845)
..++++.|+++|....... .+.++...+++++.++..++++..+.+.+.|+++.|++++.++ ++.+++.|.++|.++.
T Consensus 369 ~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 6789999999998752110 1246888999999999999999999999999999999999999 9999999999999998
Q ss_pred cCC
Q psy12605 443 GDG 445 (845)
Q Consensus 443 ~~~ 445 (845)
.+.
T Consensus 449 ~~~ 451 (457)
T 1xm9_A 449 SSK 451 (457)
T ss_dssp SST
T ss_pred cch
Confidence 765
No 21
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.4e-33 Score=316.50 Aligned_cols=373 Identities=17% Similarity=0.221 Sum_probs=306.7
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.+|.|+.+|+ ++++++|..|+++|.+++.++++.+..+++.|++|.|+++|++++++++..|+++|+||+.++++++..
T Consensus 3 ~l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999995 667899999999999999887777889999999999999999999999999999999999988999999
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc--------CCchhhHHHHHHH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH--------HDTSVSIYLWLSI 240 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------~~~~~~~~~~~~l 240 (845)
+++.|++|.|+++|....+.++++.++|+|.|++.+. ........ |++|.|++++.. ...+.+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~------- 152 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSR------- 152 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------------
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhc-------
Confidence 9999999999999984446799999999999999984 33333444 999999999932 211100
Q ss_pred hhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhccC------CchhhHHHHHHHHHHHhcC
Q psy12605 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLLSH------KEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~------~~~~v~~~al~~L~nl~~~ 313 (845)
+ ..+..+...|+|+|.+++.. ++.++.+.+. |+++.|+.+|.+ .+..++..++.+|.|++..
T Consensus 153 -e---------~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 221 (457)
T 1xm9_A 153 -E---------VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221 (457)
T ss_dssp -----------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred -c---------cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence 0 00112777999999999987 6778888887 999999999975 4567889999999998631
Q ss_pred C--------------------------------------------------hhhHHHHhcCCccchhhHhhcC-CchhhH
Q psy12605 314 T--------------------------------------------------DEQTQVILNCDALSHFPALLTH-PKEKIC 342 (845)
Q Consensus 314 ~--------------------------------------------------~~~~~~i~~~~~l~~L~~lL~~-~~~~~~ 342 (845)
. +...+.+.+.++++.++.+|.+ .++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~ 301 (457)
T 1xm9_A 222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301 (457)
T ss_dssp HHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHH
Confidence 0 1122345566778888899965 568999
Q ss_pred HHHHHHHHHhhcCChHH---H-HHHH-hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChH
Q psy12605 343 KEAVWFLSNITAGNQAQ---V-QAVI-DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 417 (845)
Q Consensus 343 ~~a~~~L~nl~~~~~~~---~-~~l~-~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~ 417 (845)
+.|+|+|+|++.++... . +.++ +.+++|.|+++|.++ +.+++.+|+|+|.|++.+. +. +.++..|+++
T Consensus 302 e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-----~~~v~~~A~~aL~nls~~~-~~-~~~i~~~~i~ 374 (457)
T 1xm9_A 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-----NSDVVRSGASLLSNMSRHP-LL-HRVMGNQVFP 374 (457)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTSG-GG-HHHHHHHTHH
T ss_pred HHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-----CHhHHHHHHHHHHHHhcCH-HH-HHHHHHhhhH
Confidence 99999999999875432 2 3344 589999999999885 7899999999999998853 33 4455678999
Q ss_pred HHHHhhCCCCH------HHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 418 LFLRLLMSPHS------NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 418 ~Lv~lL~~~~~------~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
.|+++|.++++ ++...++++|+++...++.....+.++|+++.|+.++.+..+.++.+.++|+|.+++.+++
T Consensus 375 ~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999998743 6888999999999998888999999999999999999887667999999999999997663
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2e-31 Score=306.76 Aligned_cols=366 Identities=34% Similarity=0.564 Sum_probs=322.2
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCCh-HHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQ-AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
..++.++..|.++++.++..|+++|.+++.... +....+++.|++|.|+++|.+. +++.++..|+|+|++++.++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE----DFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC----CCHHHHHHHHHHHHHHhCCC
Confidence 468899999999999999999999999977654 5667888999999999999875 35899999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
++.+..+++.|+++.|+.+|.++++.++..|+|+|++++.+++..+..+.+.|+++.|+.++....+..+++.++|+|++
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999777778999999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
||.+. +........++++.|..++.+.++++... +| +.+++.
T Consensus 230 L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~----------------------------------- 273 (528)
T 4b8j_A 230 FCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD----------------------------------- 273 (528)
T ss_dssp HHCSS-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS-----------------------------------
T ss_pred HHcCC-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc-----------------------------------
Confidence 99987 45566777889999999999888887664 44 555543
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
+.+...+.+.+.|+++.|+.++.++++.++..|+++|+|++.+++...+.+++.|++|.|+++|.
T Consensus 274 ---------~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~------ 338 (528)
T 4b8j_A 274 ---------GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT------ 338 (528)
T ss_dssp ---------SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH------
T ss_pred ---------CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc------
Confidence 33344456777889999999999999999999999999999999999999999999999999883
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCC-CccchhHHHHHHH
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQG-EFQTQKEAAWAIS 720 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~ 720 (845)
+. ++.++++|+|+|+
T Consensus 339 ----------------------------------------------------------------~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 339 ----------------------------------------------------------------QNLKKSIKKEACWTIS 354 (528)
T ss_dssp ----------------------------------------------------------------SCCCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCCcHHHHHHHHHHHH
Confidence 34 7899999999999
Q ss_pred hhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHH
Q psy12605 721 NLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEI 800 (845)
Q Consensus 721 ~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v 800 (845)
|++ .++++....+++.|+++.|+.+|...+..++..|+++|.++...+... ....+.+.|+++.|..++.++++.+
T Consensus 355 nl~-~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~---~~~~l~~~~~i~~L~~lL~~~d~~v 430 (528)
T 4b8j_A 355 NIT-AGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD---QIKYLVSEGCIKPLCDLLICPDIRI 430 (528)
T ss_dssp HHH-TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH---HHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHH-CCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH---HHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 999 578888999999999999999999999999999999999999874332 3556778999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy12605 801 YKLAYDIIERYFS 813 (845)
Q Consensus 801 ~~~a~~~l~~~~~ 813 (845)
+..|.+.|.+++.
T Consensus 431 ~~~al~~L~~l~~ 443 (528)
T 4b8j_A 431 VTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888777653
No 23
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=6.4e-32 Score=297.08 Aligned_cols=378 Identities=16% Similarity=0.158 Sum_probs=297.1
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCC------------hhHHHHHHHHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH------------SNVCEQAVWALG 156 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~------------~~v~~~a~~~L~ 156 (845)
.++.|+..+. +.++. .....|..++.. ++.+..+++.|++|.|+++|+.++ ++++..|+|+|.
T Consensus 33 ~~~~l~~~~~-~~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 33 MVYSLLSMLG-THDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp -------------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 4788888884 44444 367788888864 678899999999999999999743 699999999999
Q ss_pred HhcCCChhhHHHHHhcCCh----------hhHHhhhcCCC-CHH-----HHH-------HHHHHHHHhhcCCCCCCChhH
Q psy12605 157 NIIGDGPQLRDYVINMGVV----------PPLLSFIKPDI-PIS-----FLR-------NVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i----------~~Lv~ll~~~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~ 213 (845)
||+...++..+...+.|++ +.+++++.+.. ..+ ++. +|+|+|.|++.+. ..+....
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~ 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMN 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 9998888887777777777 66667776542 111 334 8999999998764 4455666
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh-cCchhhHHhhc
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID-SGVVPSLIPLL 292 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL 292 (845)
..|+++.|+.++..+.... . ..++ ..+..++..|+|+|.+|+..++.....+.. .|+++.|+.+|
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~-----~---~~~~------~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL 252 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMY-----G---LTND------HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 252 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHS-----T---TCCC------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG
T ss_pred HCCCHHHHHHHHhhhhccc-----c---cccC------CCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH
Confidence 7899999999995310000 0 0000 001128899999999999887766666644 56699999999
Q ss_pred cCCchhhHHHHHHHHHHHhcC-ChhhHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHHH-hcCCh
Q psy12605 293 SHKEVKVQTASLRAVGNIVTG-TDEQTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAVI-DAGLL 369 (845)
Q Consensus 293 ~~~~~~v~~~al~~L~nl~~~-~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~-~~~~i 369 (845)
.++++.++..|+++|+|++.+ ++..+..+.+.|+++.|+++| .+.++.+++.|+.+|+|++.+.++....+. ..|++
T Consensus 253 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal 332 (458)
T 3nmz_A 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 332 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcH
Confidence 999999999999999999985 567888999999999999975 567889999999999999886666666776 79999
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhc---CChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+.|+++|....+. ....++..|+|+|.|++. ++++.++.+++.|+++.|+.+|.+++..+++.|+|+|+|++..++
T Consensus 333 ~~Lv~LL~~~~~~-~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~ 411 (458)
T 3nmz_A 333 AFLVGTLTYRSQT-NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 411 (458)
T ss_dssp HHHHHHTTCCCSS-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCCCc-chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH
Confidence 9999999875210 011589999999999997 788999999999999999999999999999999999999998889
Q ss_pred HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 447 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 447 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.+..+.+.|+++.|+.++... +..+++.++|+|.||+.+.
T Consensus 412 ~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 412 KDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999764 4588999999999999876
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3e-30 Score=296.83 Aligned_cols=370 Identities=32% Similarity=0.514 Sum_probs=322.0
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCC-hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGN-QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
+.++.++..|.+.++.++..|+++|.++.... ......+++.|++|.|+++|.+. +++.++..|+|+|++++.++
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~----~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN----QPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT----SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC----CCHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999999996653 34456788899999999999875 37899999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
++....+++.|+++.|+.+|.++++.++..|+|+|++++.+++..++.+...|+++.|+.++.+ .+.++++.++|+|++
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 556899999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
|+.+..+........++++.|..++.+.|+++... +| +.+++..
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---------------------------------- 287 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---------------------------------- 287 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----------------------------------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----------------------------------
Confidence 99987555667777889999999999888887654 55 5555543
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
.+...+.+.+.|+++.|+.++.++++.++..|+++|+|++.+++...+.+++.|++|.|+.+|
T Consensus 288 ----------~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------- 350 (530)
T 1wa5_B 288 ----------PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL------- 350 (530)
T ss_dssp ----------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-------
T ss_pred ----------CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-------
Confidence 233345566778899999999999999999999999999999998888899999999999888
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHh
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISN 721 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 721 (845)
.+.++.++.+|+|+|++
T Consensus 351 ---------------------------------------------------------------~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 351 ---------------------------------------------------------------SSPKENIKKEACWTISN 367 (530)
T ss_dssp ---------------------------------------------------------------TCSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cCCCHHHHHHHHHHHHH
Confidence 45678999999999999
Q ss_pred hcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHH
Q psy12605 722 LTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIY 801 (845)
Q Consensus 722 l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~ 801 (845)
++ .++++....+++.|+++.|+.+|.+.++.++..|+++|.++...+... ......+.+.|+++.|..++.++++.++
T Consensus 368 l~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 368 IT-AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR-PDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HT-TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC-THHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HH-cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99 568888888999999999999999999999999999999999865320 0134566789999999999999999999
Q ss_pred HHHHHHHHHhcCcc
Q psy12605 802 KLAYDIIERYFSEV 815 (845)
Q Consensus 802 ~~a~~~l~~~~~~~ 815 (845)
..|.+.|.+++...
T Consensus 446 ~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 446 EVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887543
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=2.9e-28 Score=260.49 Aligned_cols=276 Identities=18% Similarity=0.191 Sum_probs=239.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC----------CCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD----------IPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
..+....+.+|+|+|+|++.+ +++|+.+.+.|+++.|+.+|..+ .+..+++.|+|+|.|++.+.+....
T Consensus 42 ~~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 42 PAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334456677999999999977 78999999999999999999521 2357899999999999987743333
Q ss_pred hh-HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhH
Q psy12605 211 MS-TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 211 ~~-~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L 288 (845)
.. ...|++|.|+.++.+++++ ++..|+|+|.+|+.. +.+.+..+.+.|+++.|
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~-------------------------v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESED-------------------------LQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHH-------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHH-------------------------HHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 22 2357799999999998888 999999999999986 45677888899999999
Q ss_pred Hhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHh-cCCccchhhHhhcCCch----hhHHHHHHHHHHhhc---CChHH
Q psy12605 289 IPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVIL-NCDALSHFPALLTHPKE----KICKEAVWFLSNITA---GNQAQ 359 (845)
Q Consensus 289 v~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~-~~~~l~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~ 359 (845)
+.+| +++++.++..|+++|+|++.++++.+..+. ..|+++.|+.+|.+.++ ++++.|+++|+|++. ..++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9975 667889999999999999986666666666 78999999999987654 589999999999987 68888
Q ss_pred HHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 360 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
++.+.+.|+++.|+++|.++ +..++.+|+|+|.|++.++++.+..+.+.|+++.|++++.++++.+++.|+++|.
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSH-----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCC-----ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999999874 7899999999999999989999999999999999999999999999999999999
Q ss_pred HhhcCChH
Q psy12605 440 NIIGDGPQ 447 (845)
Q Consensus 440 nl~~~~~~ 447 (845)
|++.+.+.
T Consensus 331 nL~~~~~~ 338 (354)
T 3nmw_A 331 NLMANRPA 338 (354)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCHH
Confidence 99987654
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=7.7e-28 Score=257.22 Aligned_cols=277 Identities=17% Similarity=0.159 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 60 ~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
..+.+|+.+|.++... ....+.+++.|+++.|+.+|..+ .++.+|..|+++|.+++.++++++..+..
T Consensus 47 ~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455789999998553 35678899999999999999421 24679999999999999987777777765
Q ss_pred -cCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC-C
Q psy12605 130 -AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK-D 206 (845)
Q Consensus 130 -~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~ 206 (845)
.|+||.|+++|+++++++++.|+++|+||+.. ++++|..+.+.|+||.|+++|.+..+..+++.|+++|.||+... +
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 45699999999999999999999999999974 67899999999999999998654446689999999999999844 2
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc---CChhhHHHHHhcC
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMVIDSG 283 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g 283 (845)
....+....|++|.|++++.+.++.. ..+++..|+|+|.+++. ..++.++.+.+.|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~---------------------~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g 263 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTN---------------------TLAIIESGGGILRNVSSLIATNEDHRQILRENN 263 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSS---------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcc---------------------cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC
Confidence 22222225799999999998754310 00178899999999997 5777788899999
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
+++.|+.+|.+++..++..|+++|+|++.++++.++.+.+.|+++.|++++.++++.+++.|+++|.|++.+.+..
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999888888999999999999999999999999999999999999887664
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=2.1e-24 Score=222.47 Aligned_cols=243 Identities=26% Similarity=0.367 Sum_probs=222.7
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
|.+|.|+++|+ ++++++|..|+++|.+++..+++++..+++.|+++.|+++|++++++++..|+++|++++.++++.+.
T Consensus 2 ~~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999995 56699999999999999998888999999999999999999999999999999999999988899999
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.+.+.|+++.++.++.++ +..++..|+++|.+++...+.........++++.|++++.++++.
T Consensus 81 ~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~---------------- 143 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE---------------- 143 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH----------------
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH----------------
Confidence 999999999999999976 568999999999999976544444455678999999999998888
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
++..++++|.+++...++..+.+.+.|+++.|+.++.++++.++..|+.+|++++.+++..++.+.+.|++
T Consensus 144 ---------~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 214 (252)
T 4hxt_A 144 ---------VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGV 214 (252)
T ss_dssp ---------HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHH
T ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 99999999999999888887888899999999999999999999999999999999888888899999999
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
+.|+.++.++++.++..|+++|+|++...+
T Consensus 215 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 215 EVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999976543
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5e-24 Score=241.65 Aligned_cols=469 Identities=13% Similarity=0.132 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHH-HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC
Q psy12605 106 QFEAAWALTNIASGTSAQTQEV-VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP 184 (845)
Q Consensus 106 ~~~a~~~L~~la~~~~~~~~~i-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~ 184 (845)
...+..+|..+---.++....+ ...|.++.+.+.+.+......+.+++-|.+.+..+..+|+.+.+ +.++.|...++.
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~-~~~~~L~~~l~~ 307 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITE-NYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHH-HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHH-hHHHHHHHHhcc
Confidence 4556666666654446666554 45788899998886654444444444444444466778888855 567999999865
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHH
Q psy12605 185 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264 (845)
Q Consensus 185 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~ 264 (845)
. .++..|+-+|+.+....+... .......+.+.+.+.+++.+ -+..|++.
T Consensus 308 ~---~ir~lAavvL~KL~~~~~~~~--~si~~La~~~~~~L~~~~~~-------------------------~~~~AvEg 357 (778)
T 3opb_A 308 E---DVQIYSALVLVKTWSFTKLTC--INLKQLSEIFINAISRRIVP-------------------------KVEMSVEA 357 (778)
T ss_dssp G---GGHHHHHHHHHHHTGGGTCTT--CCHHHHHHHHHHHTTTCCHH-------------------------HHHHHHHH
T ss_pred H---HHHHHHHHHHHHHhcCCCCCc--CcHHHHHHHHHHHHhcCCcc-------------------------HHHHHHHH
Confidence 3 677777777777766553322 23456888888888877666 67899999
Q ss_pred HHHhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHH
Q psy12605 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICK 343 (845)
Q Consensus 265 L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~ 343 (845)
|+|++...........+.++++.|+.+++. .+..+...++.+|.|++...+.... +...+..|..+.+...++...
T Consensus 358 LaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~---e~~~l~~Lk~~A~~~~p~~~~ 434 (778)
T 3opb_A 358 LAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX---XXXXXXXXXXXXXXXXPAADK 434 (778)
T ss_dssp HHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC---CCC------------------
T ss_pred HHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch---hhhhhhhhhhhccccCcccCc
Confidence 999998766554455555789999999985 7788999999999999976543111 012233333333221111110
Q ss_pred HHHHHHHHhhcCChH-HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHh
Q psy12605 344 EAVWFLSNITAGNQA-QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 422 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~-~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~l 422 (845)
... .+.+= .+..+ .++.+.+.|++|.|+.++.+. ++.+|..|+|+|.+++. +++.+..+++.|+++.|+++
T Consensus 435 ~d~-~~~~~-~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-----s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~l 506 (778)
T 3opb_A 435 VGA-EKAAK-EDILLFNEKYILRTELISFLKREMHNL-----SPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEY 506 (778)
T ss_dssp CCT-HHHHH-HHHHHHHHHHTTTTTHHHHHHHHGGGS-----CHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHH
T ss_pred ccc-cccch-HHHHHHHHHHHHHCcCHHHHHHHHcCC-----CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 000 00000 00112 346678899999999999884 89999999999999975 47899999999999999999
Q ss_pred hCCCCHH---HHHHHHHHHHHhhcC-ChHHHHHHH---hCCChHHHHhccCCCCChh------------H-HHHHHHHHH
Q psy12605 423 LMSPHSN---VCEQAVWALGNIIGD-GPQLRDYVI---NMGVVPPLLSFIKPDIPIS------------F-LRNVTWVIV 482 (845)
Q Consensus 423 L~~~~~~---v~~~a~~~L~nl~~~-~~~~~~~l~---~~g~l~~L~~ll~~~~~~~------------~-~~~~~~~l~ 482 (845)
+.+.... ++..|+.+|++++.. +|.. .+- ..|++++|+.+|....... + ...++.+|.
T Consensus 507 L~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 507 LANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 9988654 899999999999953 3433 111 1388999999997311100 1 223444444
Q ss_pred HhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccc
Q psy12605 483 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQH 562 (845)
Q Consensus 483 nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l 562 (845)
||+....+
T Consensus 585 NLAs~~~n------------------------------------------------------------------------ 592 (778)
T 3opb_A 585 NLASSETS------------------------------------------------------------------------ 592 (778)
T ss_dssp HHHHCCSH------------------------------------------------------------------------
T ss_pred HHhcCCcc------------------------------------------------------------------------
Confidence 44432200
Q ss_pred cccccccCCChhhHHHHHhC-CcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCC------ChHHHHHHhh
Q psy12605 563 SIYMCVSPGTDEQTQVILNC-DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG------LLPKIIANLQ 635 (845)
Q Consensus 563 ~~l~nl~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~------~l~~L~~ll~ 635 (845)
..++..+.++.. |+++.|..++.+.++.++++|+|+++||+.+.....+.+.+.+ .++.|+.++
T Consensus 593 --------~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll- 663 (778)
T 3opb_A 593 --------DGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL- 663 (778)
T ss_dssp --------HHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-
T ss_pred --------cchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-
Confidence 002233556664 8899999999999999999999999999975432112333222 255566555
Q ss_pred hhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHH
Q psy12605 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEA 715 (845)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 715 (845)
.++|.++|+.|
T Consensus 664 ---------------------------------------------------------------------~s~D~~~r~AA 674 (778)
T 3opb_A 664 ---------------------------------------------------------------------QLSDVESQRAV 674 (778)
T ss_dssp ---------------------------------------------------------------------GCSCHHHHHHH
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 67889999999
Q ss_pred HHHHHhhcccCCHHHHHHHHHc-CCchHHhhhhcc--ccHHHHHHHHHHHHHHHHhh
Q psy12605 716 AWAISNLTISGNRDQVAKLVQE-GVIPPFCDLLSC--KDAQVIQVVLDGINNMLKMA 769 (845)
Q Consensus 716 ~~~l~~l~~~~~~~~~~~l~~~-~~i~~L~~~L~~--~d~~~~~~al~~L~~l~~~~ 769 (845)
+|+|+|++ .+++.....+++. ++++.++.+|.+ .+++++..++.+++||+...
T Consensus 675 agALAnLt-s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 675 AAIFANIA-TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHH-HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 99999997 5678888999977 899999999999 89999999999999999743
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=2.9e-24 Score=221.55 Aligned_cols=240 Identities=33% Similarity=0.537 Sum_probs=218.9
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
...+.++..| .++++++|..|+++|.++.+.+.+.+..+++.|++|.|+++|++++++++..|+++|++++.++++.+.
T Consensus 12 ~~~~~~~~~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4589999999 477889999999999887666677888999999999999999999999999999999999988899999
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.+.+.|+++.|+.++.++ +..++..|+|+|.+++.+.+.........+++|.|+.++.++++.
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~---------------- 153 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---------------- 153 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH----------------
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH----------------
Confidence 999999999999999987 568999999999999987744334556678999999999998888
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
++..++|+|.+++..+++....+.+.|+++.|+.+|.++++.++..|+.+|++++.+++..+..+.+.|++
T Consensus 154 ---------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 224 (252)
T 4db8_A 154 ---------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 224 (252)
T ss_dssp ---------HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Confidence 99999999999999888888888899999999999999999999999999999998888888899999999
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
+.|+.++.+.++.++..|+++|.+++.
T Consensus 225 ~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 225 EKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999964
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=3.3e-23 Score=213.47 Aligned_cols=243 Identities=27% Similarity=0.386 Sum_probs=227.8
Q ss_pred hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC
Q psy12605 216 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295 (845)
Q Consensus 216 ~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 295 (845)
+.+|.|+.++.+++++ ++..|+++|.+++....+....+.+.|+++.|+.+|.++
T Consensus 2 ~~i~~L~~~L~~~~~~-------------------------~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 56 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSE-------------------------TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST 56 (252)
T ss_dssp CHHHHHHHHTTCSCHH-------------------------HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred CcHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC
Confidence 4688999999998887 999999999999998887888888999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
++.++..|+.+|++++.+++..+..+.+.|+++.++.++.++++.++..|+++|.+++...+.....+.+.|+++.|+++
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999998888898999999999999999
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 455 (845)
+.+. ++.++..++++|++++.++++....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.
T Consensus 137 l~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 211 (252)
T 4hxt_A 137 LTST-----DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA 211 (252)
T ss_dssp TTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT
T ss_pred HcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 9874 79999999999999999998888999999999999999999999999999999999999899999999999
Q ss_pred CChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 456 GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 456 g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
|+++.|+.++.+.+ .++++.++|+|+||+....
T Consensus 212 ~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 212 GGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp THHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCC
Confidence 99999999998654 5899999999999998764
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=3.2e-23 Score=213.74 Aligned_cols=240 Identities=35% Similarity=0.566 Sum_probs=220.3
Q ss_pred hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC
Q psy12605 216 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295 (845)
Q Consensus 216 ~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 295 (845)
...+.+..++.+++++ ++..|+++|.++.....+..+.+.+.|+++.|+.+|.++
T Consensus 12 ~~~~~~~~~L~s~~~~-------------------------~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~ 66 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQ-------------------------EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP 66 (252)
T ss_dssp CSHHHHHHHHHSSCSS-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred chHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC
Confidence 4578888999999999 999999999765554666777888999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
++.++..|+.+|++++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++++.+.+.....+.+.|+++.|+++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999988877766888999999999999
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 455 (845)
+.+. ++.++..|+|+|++++.++++....+.+.|+++.|++++.++++.++..|+++|++++..++..+..+.+.
T Consensus 147 L~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (252)
T 4db8_A 147 LSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221 (252)
T ss_dssp GGCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HhCC-----CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 9874 78999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 456 GVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 456 g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
|+++.|+.++.+.+ .++++.++|+|+||+.
T Consensus 222 g~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 222 GALEKLEQLQSHEN-EKIQKEAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTTTCSS-SHHHHTHHHHHHTTC-
T ss_pred CcHHHHHHHhCCCC-HHHHHHHHHHHHHHhc
Confidence 99999999998754 4899999999999985
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.1e-22 Score=225.23 Aligned_cols=402 Identities=14% Similarity=0.145 Sum_probs=299.2
Q ss_pred hcHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh
Q psy12605 44 VNLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA 122 (845)
Q Consensus 44 ~~i~~lv~~~l~~-~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~ 122 (845)
.++-.++.+.+.+ .+.......+..|... +.+ ...+..+..++++.|.++++ + ..+|..|+.+|.++.+.+..
T Consensus 254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaA-Ci~--~~cR~~I~~~~~~~L~~~l~-~--~~ir~lAavvL~KL~~~~~~ 327 (778)
T 3opb_A 254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSA-CID--ETMRTYITENYLQLLERSLN-V--EDVQIYSALVLVKTWSFTKL 327 (778)
T ss_dssp TTHHHHHHHHHHSSCCHHHHHHHHHHHHHH-CCS--HHHHHHHHHHHHHHHHHHTT-S--GGGHHHHHHHHHHHTGGGTC
T ss_pred ccHHHHHHHHHhcccchHHHHHHHHHHHHH-hCC--cHHHHHHHHhHHHHHHHHhc-c--HHHHHHHHHHHHHHhcCCCC
Confidence 3333333366654 4444444455555443 333 34577778889999999994 2 58999999999998864322
Q ss_pred hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh-cCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 123 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN-MGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
....+. ...+.+.+.|..++.+-+..|++.|+.++.+ ++.|+.+++ .|+++.|+.+++...+.++...++.+|.|+
T Consensus 328 ~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NL 404 (778)
T 3opb_A 328 TCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANL 404 (778)
T ss_dssp TTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHT
T ss_pred CcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 211222 2678888888887777799999999999955 678888875 467999999998644557899999999999
Q ss_pred hcCCCCCCC--------------------------------------hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhh
Q psy12605 202 CRNKDPPPS--------------------------------------MSTIIELLPALNILIHHHDTSVSIYLWLSIIEK 243 (845)
Q Consensus 202 ~~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~ 243 (845)
+.+.+.... .....|++|.|+.++.++++.
T Consensus 405 t~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~------------ 472 (778)
T 3opb_A 405 STLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPN------------ 472 (778)
T ss_dssp TCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHH------------
T ss_pred cCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHH------------
Confidence 997653211 011236667777777666666
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchh---hHHHHHHHHHHHhcCChhhHHH
Q psy12605 244 NPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVK---VQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 244 ~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~---v~~~al~~L~nl~~~~~~~~~~ 320 (845)
++..++|+|.+++.. .+.+..+++.|+++.|+.+|.+.... .+..|+.+|.++....+.. ..
T Consensus 473 -------------~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~-~~ 537 (778)
T 3opb_A 473 -------------CKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG-LI 537 (778)
T ss_dssp -------------HHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred -------------HHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH-HH
Confidence 999999999999865 56677888999999999999776543 8999999999998543321 12
Q ss_pred Hhc---CCccchhhHhhcC-Cch-------------hhHHHHHHHHHHhhcCC----hHHHHHHHhc-CChHHHHHHhhh
Q psy12605 321 ILN---CDALSHFPALLTH-PKE-------------KICKEAVWFLSNITAGN----QAQVQAVIDA-GLLPKIIANLQK 378 (845)
Q Consensus 321 i~~---~~~l~~L~~lL~~-~~~-------------~~~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~Lv~lL~~ 378 (845)
+-. .|++++|+.+|.. +.. -.+.+|+.+|.|++... ++.++.++.. |+++.|..++.+
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 211 3899999999983 221 12779999999999886 3456777875 999999999987
Q ss_pred cccccCChhHHHHHHHHHHHHhcCChHhHHHHHHc------CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12605 379 VGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAA------GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 452 (845)
Q Consensus 379 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~------g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 452 (845)
+ +..+|..|+++++|++.+.....+.+.+. +.++.|+.++.+++.+++..|.|+|++++..++.....+
T Consensus 618 ~-----n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 618 E-----NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp S-----SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred C-----CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4 78999999999999997443222344322 247889999999999999999999999987777766666
Q ss_pred HhC-CChHHHHhccCCC-CChhHHHHHHHHHHHhhc
Q psy12605 453 INM-GVVPPLLSFIKPD-IPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 453 ~~~-g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~ 486 (845)
.+. ++++.++.++... .+.+++..++.++.||+.
T Consensus 693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 666 8999999999874 667999999999999996
No 33
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.90 E-value=4.5e-23 Score=251.04 Aligned_cols=598 Identities=13% Similarity=0.118 Sum_probs=381.3
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChH
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~ 134 (845)
.+.++.+|..|+..|++.+...-. ....-....+-+.+++.|. +.++.+|..++.+++.++....... -.+.++
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~ 131 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQN----WPDLLP 131 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTTT----CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCccc----cHHHHH
Confidence 567889999999999998764211 1111123345677788884 6778999999999999987431110 135789
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHH----hcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI----NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~----~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
.|++.+.++++.+++.++.+|+.++.+.+.....-. -...++.++.+++++ +..+|..|+++|.++..... ...
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~-~~~ 209 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRT-QAL 209 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTC-HHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccc-HHH
Confidence 999999999999999999999999965433211100 113567777777765 56899999999998876532 111
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
.......++.+..++.+++++ ++..++++|..++...++......+ ++++.++.
T Consensus 210 ~~~~~~~l~~l~~~~~d~~~~-------------------------vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~ 263 (852)
T 4fdd_A 210 MLHIDSFIENLFALAGDEEPE-------------------------VRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQ 263 (852)
T ss_dssp HTSHHHHHHHHHHHHTCCCHH-------------------------HHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHH-------------------------HHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHH
Confidence 122347788888888888887 9999999999998766554332222 47778888
Q ss_pred hccCCchhhHHHHHHHHHHHhcCChhhHHHHhc--CCccchhhHhh-----------cC-----------CchhhHHHHH
Q psy12605 291 LLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN--CDALSHFPALL-----------TH-----------PKEKICKEAV 346 (845)
Q Consensus 291 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~--~~~l~~L~~lL-----------~~-----------~~~~~~~~a~ 346 (845)
.+.+.++.++..|+.++.+++... ..+..+.. ...++.++..+ .+ .+..+|+.|.
T Consensus 264 ~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~ 342 (852)
T 4fdd_A 264 RTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSA 342 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHH
T ss_pred HccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHH
Confidence 888889999999999999997643 12221111 13456666665 22 1224688888
Q ss_pred HHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC
Q psy12605 347 WFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 426 (845)
Q Consensus 347 ~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 426 (845)
.+|..++...++. ++ ..+++.+.+.+.+ .++.+|..|++++++++.+..+.... .-.+.++.++.++.++
T Consensus 343 ~~L~~la~~~~~~---~~-~~l~~~l~~~l~~-----~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~ 412 (852)
T 4fdd_A 343 AALDVLANVYRDE---LL-PHILPLLKELLFH-----HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK 412 (852)
T ss_dssp HHHHHHHHHHGGG---GH-HHHHHHHHHHHTC-----SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccHH---HH-HHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC
Confidence 8888885432211 11 1245555566655 47999999999999999887654332 2245789999999999
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHH
Q psy12605 427 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 506 (845)
Q Consensus 427 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ 506 (845)
++.||..++|++++++...........-.+.++.|+..+.+. +..++..++|++.+++....+. -...+..+++.|..
T Consensus 413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVF 490 (852)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHHHH
Confidence 999999999999999863211000001123566777777654 5689999999999999765321 23345667777766
Q ss_pred hhcCCChhHH----HHHH-H-------------------------HhhhcCchhh---------HHHHhhh-------hh
Q psy12605 507 LIHHHDTSVS----IYLW-L-------------------------SIIEKNPQIS---------KILVSKM-------KV 540 (845)
Q Consensus 507 ll~~~d~~v~----~~~~-l-------------------------~~l~~~~~~~---------~~~~~~~-------~~ 540 (845)
++...+.... ..+. + ..+.+..... ....... .+
T Consensus 491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i 570 (852)
T 4fdd_A 491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPV 570 (852)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 6654332211 1110 1 0111111100 0000011 12
Q ss_pred hHHHHhhhcc-----------C----CCCcccccccccccccccCCC-hhhHHHHHhCCcccchHHhhcCCChhHHHHHH
Q psy12605 541 CSRYLYYLSH-----------N----SGPMSCQKKQHSIYMCVSPGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAV 604 (845)
Q Consensus 541 ~~~L~~ll~~-----------~----~~~~~~~~~~l~~l~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 604 (845)
.+.++..+.+ + ..+...+..++..++.++.+- .+....+.+.++++.+..++.++++.++..++
T Consensus 571 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~ 650 (852)
T 4fdd_A 571 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 650 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence 2223333321 1 112223344566666665433 33333444678999999999999999999999
Q ss_pred HHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchh
Q psy12605 605 WFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRV 684 (845)
Q Consensus 605 ~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (845)
++++.++..........+.. ++|.+.+.+
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~-~lp~l~~~l-------------------------------------------------- 679 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIAD-FMPILGTNL-------------------------------------------------- 679 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHH-HHHHHHHTC--------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHHHHHc--------------------------------------------------
Confidence 99999984433322222211 233333222
Q ss_pred ccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc--cHHHHHHHHHHH
Q psy12605 685 AATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK--DAQVIQVVLDGI 762 (845)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~--d~~~~~~al~~L 762 (845)
...++.++..|+|+++.++..... .....+ ..+++.|+.+|++. ...+++++..+|
T Consensus 680 --------------------~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~i 737 (852)
T 4fdd_A 680 --------------------NPEFISVCNNATWAIGEISIQMGI-EMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITI 737 (852)
T ss_dssp --------------------CTTSHHHHHHHHHHHHHHHHHHGG-GGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred --------------------CccchHHHHHHHHHHHHHHHHhhH-hHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 556788999999999999833221 122222 36788889988875 458999999999
Q ss_pred HHHHHhhHHH
Q psy12605 763 NNMLKMADAQ 772 (845)
Q Consensus 763 ~~l~~~~~~~ 772 (845)
.+|...++..
T Consensus 738 grl~~~~~~~ 747 (852)
T 4fdd_A 738 GRLGYVCPQE 747 (852)
T ss_dssp HHHHHHCHHH
T ss_pred HHHHHhCHHH
Confidence 9999886553
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=3.7e-22 Score=207.45 Aligned_cols=230 Identities=15% Similarity=0.256 Sum_probs=187.2
Q ss_pred ChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHh
Q psy12605 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 463 (845)
Q Consensus 385 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ 463 (845)
+.+-+..|+..|.+++.. .++...+...|+++.|+. +|.+++++++..|+|+|++++.+++.+++.+.+.|+++.|+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 53 DQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 345678888889988874 357778899999999999 999999999999999999999999888888777777777776
Q ss_pred ccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHH
Q psy12605 464 FIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSR 543 (845)
Q Consensus 464 ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 543 (845)
+|.++
T Consensus 132 LL~~~--------------------------------------------------------------------------- 136 (296)
T 1xqr_A 132 LLDRD--------------------------------------------------------------------------- 136 (296)
T ss_dssp HHHHC---------------------------------------------------------------------------
T ss_pred HHccC---------------------------------------------------------------------------
Confidence 66422
Q ss_pred HHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHH
Q psy12605 544 YLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 623 (845)
Q Consensus 544 L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~ 623 (845)
+++.+++.|+|+|+|++.+++...+.|.+
T Consensus 137 ---------------------------------------------------~~~~v~~~A~~ALsnl~~~~~~~~~~~~~ 165 (296)
T 1xqr_A 137 ---------------------------------------------------ACDTVRVKALFAISCLVREQEAGLLQFLR 165 (296)
T ss_dssp ---------------------------------------------------SCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 23457778888888888888887888999
Q ss_pred CCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhcc
Q psy12605 624 AGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMF 703 (845)
Q Consensus 624 ~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (845)
.|++|.|+.+|
T Consensus 166 ~ggi~~L~~lL--------------------------------------------------------------------- 176 (296)
T 1xqr_A 166 LDGFSVLMRAM--------------------------------------------------------------------- 176 (296)
T ss_dssp TTHHHHHHHHH---------------------------------------------------------------------
T ss_pred CCCHHHHHHHH---------------------------------------------------------------------
Confidence 99999999988
Q ss_pred CCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHH-------HH
Q psy12605 704 FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVE-------TL 776 (845)
Q Consensus 704 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~-------~~ 776 (845)
.+.++.++..|+|+|.+++ .++++....+++.|++++|+.+|...|.++++.++.+|.+|+...+.... .+
T Consensus 177 -~~~d~~v~~~A~~aLs~L~-~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l 254 (296)
T 1xqr_A 177 -QQQVQKLKVKSAFLLQNLL-VGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 254 (296)
T ss_dssp -HSSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCH
T ss_pred -cCCCHHHHHHHHHHHHHHH-hCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHH
Confidence 4578899999999999999 45788899999999999999999999999999999999999987543211 12
Q ss_pred HHHHHHhChHHHHHhhhcCC-CHHHHHHHHHHHHHhcCcccC
Q psy12605 777 ANMIEECGGLDKIEMLQNHE-NVEIYKLAYDIIERYFSEVED 817 (845)
Q Consensus 777 ~~~~~e~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~ 817 (845)
...+++ .++.++.++ +.+++++|..++++||..++|
T Consensus 255 ~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f~~~~~ 291 (296)
T 1xqr_A 255 EELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291 (296)
T ss_dssp HHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHcCCCCC
Confidence 333433 356777676 789999999999999976543
No 35
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.88 E-value=4.1e-20 Score=215.51 Aligned_cols=569 Identities=13% Similarity=0.112 Sum_probs=394.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC--Chhh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG--TSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~--~~~~ 123 (845)
+..++ ..+.++++..|..|+..+..+...... .-....++|.|...+ ++++++|..++.+|..++.. .+++
T Consensus 12 i~~l~-~~l~s~~~~~R~~A~~~l~~i~~~~~~----~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGV----ERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCH----HHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred HHHHH-HHhhcccHHHHHHHHHhHHHHHHHhCH----HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcHHH
Confidence 56777 899999999999999999887643211 111234677777766 46789999999999987642 1211
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
....++.|..++.++++.+|..|..+|++++...+.. . .....++.+..+..++ ....|..++.++..++.
T Consensus 85 -----~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~-~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 85 -----VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYP 155 (588)
T ss_dssp -----GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTT
T ss_pred -----HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHH
Confidence 2347788888888899999999999999999765431 1 1222355555665554 55788899999998876
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
... ......++|.+..++.++++. ++..++.+|..++...... .....
T Consensus 156 ~~~----~~~~~~l~~~l~~l~~d~~~~-------------------------VR~~a~~~l~~l~~~~~~~---~~~~~ 203 (588)
T 1b3u_A 156 RVS----SAVKAELRQYFRNLCSDDTPM-------------------------VRRAAASKLGEFAKVLELD---NVKSE 203 (588)
T ss_dssp TSC----HHHHHHHHHHHHHHHTCSCHH-------------------------HHHHHHHHHHHHHHTSCHH---HHHHT
T ss_pred hcC----HHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHHHHHhcHH---hHHHH
Confidence 542 234567888888888888888 8899999999887654321 12457
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+++.+..++.++++.++..|+.+|+.++...+.. .....++|.+..++.+++..+|..++.+|..++..... ..
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~ 277 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EI 277 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---cc
Confidence 7888899999999999999999999997543221 11224678888888888999999999999998653211 12
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH-hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA-QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
....+++.++.++.+ .++.++..|++++..++...+. ..........++.+..++.++++.+|..++++|+.++
T Consensus 278 ~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKD-----CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred chhHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334678889999876 4789999999999999864332 1211233456788999999999999999999999987
Q ss_pred cCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--
Q psy12605 443 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW-- 520 (845)
Q Consensus 443 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~-- 520 (845)
..-.. .......++.+..++++. +.+++..++.++..++.... .......++|.+..++.+.+..++..+.
T Consensus 353 ~~~~~---~~~~~~l~p~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~---~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~ 425 (588)
T 1b3u_A 353 PILGK---DNTIEHLLPLFLAQLKDE-CPEVRLNIISNLDCVNEVIG---IRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425 (588)
T ss_dssp HHHCH---HHHHHHTHHHHHHHHTCS-CHHHHHHHHTTCHHHHHHSC---HHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHhhH---hHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 52111 111223667777877654 45778888888887776432 1123356777777777666555544321
Q ss_pred HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHH
Q psy12605 521 LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKIC 600 (845)
Q Consensus 521 l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 600 (845)
+..+. ..+.. + .....+++.+..++.+++..+|
T Consensus 426 l~~l~--------------------~~~~~----------------------~-----~~~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 426 MPLLA--------------------GQLGV----------------------E-----FFDEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp HHHHH--------------------HHHCG----------------------G-----GCCHHHHHHHHHGGGCSSHHHH
T ss_pred HHHHH--------------------HHcCH----------------------H-----HHHHHHHHHHHHHhcCCcHHHH
Confidence 21111 11100 0 0001245677788888999999
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCc
Q psy12605 601 KEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTS 680 (845)
Q Consensus 601 ~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (845)
..|+.+++.++...... ..-..++|.+.+++
T Consensus 459 ~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~---------------------------------------------- 489 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKE---WAHATIIPKVLAMS---------------------------------------------- 489 (588)
T ss_dssp HHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTT----------------------------------------------
T ss_pred HHHHHHHHHHHHHhCch---hHHHHHHHHHHHHh----------------------------------------------
Confidence 99999999987432111 11123445444332
Q ss_pred cchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHH
Q psy12605 681 PLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLD 760 (845)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~ 760 (845)
.+.++.+|..++++++.++....++ .....+++.|...+++.+++++..+++
T Consensus 490 ------------------------~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 490 ------------------------GDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAK 541 (588)
T ss_dssp ------------------------TCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred ------------------------hCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHH
Confidence 5667889999999999998322211 133468899999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHh
Q psy12605 761 GINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 761 ~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
+|..+....+.. +......+.|..+.++++.+|+..|.+.+..+
T Consensus 542 ~l~~l~~~~~~~-------~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 542 SLQKIGPILDNS-------TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHGGGSCHH-------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhchh-------hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999998754332 11234556777788889999999999999865
No 36
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.87 E-value=4.7e-21 Score=233.19 Aligned_cols=659 Identities=13% Similarity=0.093 Sum_probs=390.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhc--cCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLE--RSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
+.+++ ....++|...|..|-..|..+-. . + |..+.|..++. .+.++.+|..|+..|.+.....-..
T Consensus 15 l~~~l-~~~~s~d~~~r~~Ae~~L~~~~~-~--p--------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 15 ILQLL-KESQSPDTTIQRTVQQKLEQLNQ-Y--P--------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp HHHHH-HHHTCSCHHHHHHHHHHHHHHTT-S--H--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred HHHHH-HHHhCcCHHHHHHHHHHHHHHHh-C--C--------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC
Confidence 44555 55578899999999999987522 1 1 23556667764 3567899999999999887532111
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
...-.....-+.+++.|.++++.+|..++.+++.++...... .-.+.++.++..+.++ +...+..++.+|..+++
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICE 157 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 111111234566777888899999999999999998543110 0124577888888776 45789999999999998
Q ss_pred CCCCCC----ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 204 NKDPPP----SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 204 ~~~~~~----~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
...... ........+|.+.+++.++++. ++..|++++..+...........
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~-------------------------vR~~A~~aL~~~~~~~~~~~~~~ 212 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK-------------------------IRSHAVACVNQFIISRTQALMLH 212 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHH-------------------------HHHHHHHHHHTTTTTTCHHHHTS
T ss_pred HhHHHhchhhhcchHHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHHhcccHHHHHH
Confidence 653210 0011456888899988888777 88899999987765443221111
Q ss_pred HhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 280 IDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
-.++++.+..++.++++.++..|+++|+.++...+.......+ ++++.++..+.+.++.+|..|+.++..++.... .
T Consensus 213 -~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~ 289 (852)
T 4fdd_A 213 -IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-C 289 (852)
T ss_dssp -HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-H
T ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-H
Confidence 1256778888888999999999999999998755432211111 467788888888999999999999999875432 1
Q ss_pred HHHHHh---cCChHHHHHHhh----------hc---cccc----CChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHH
Q psy12605 360 VQAVID---AGLLPKIIANLQ----------KV---GRIV----LRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419 (845)
Q Consensus 360 ~~~l~~---~~~i~~Lv~lL~----------~~---~~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L 419 (845)
.+ .+. ..++|.++..+. .. ++.+ .++.++..|+.++..++...++. +. ...++.+
T Consensus 290 ~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l 364 (852)
T 4fdd_A 290 KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLL 364 (852)
T ss_dssp HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHH
Confidence 12 222 234566666652 11 0000 24567899999999988643321 11 1357788
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHh
Q psy12605 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE 499 (845)
Q Consensus 420 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~ 499 (845)
..++.++++.+|..|+++|++++......-.. .-.++++.++..+.+. +..++..++|++++++....+........+
T Consensus 365 ~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 442 (852)
T 4fdd_A 365 KELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKP 442 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 88899999999999999999999866532211 1234567777777544 568888999999999975422223345678
Q ss_pred HHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccC--C----
Q psy12605 500 LLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP--G---- 571 (845)
Q Consensus 500 ~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~--~---- 571 (845)
.++.+...+.+.++.++.. +| +..++......... .-.++++.|+..+...+.... ..++.+++.++. +
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~--~~~~~ai~~l~~~~~~~~~ 519 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNL--LILYDAIGTLADSVGHHLN 519 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhhhhhc
Confidence 8899998888888888766 55 66665422211100 113566666666654322110 112223333321 0
Q ss_pred ChhhHHHHHhCCcccchH---HhhcCCChhHHHHHHHHHhhhccCC----HHHHHHHHH-------C-----------C-
Q psy12605 572 TDEQTQVILNCDALSHFP---ALLTHPKEKICKEAVWFLSNITAGN----QAQVQAVID-------A-----------G- 625 (845)
Q Consensus 572 ~~~~~~~l~~~~~l~~L~---~ll~~~~~~v~~~a~~~Lsnl~~~~----~~~~~~~~~-------~-----------~- 625 (845)
.+.... .++|.+. ..+.+.+++++ .++.+++.++..- ..+...++. . +
T Consensus 520 ~~~~~~-----~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~ 593 (852)
T 4fdd_A 520 KPEYIQ-----MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 593 (852)
T ss_dssp CHHHHH-----HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cHHHHH-----HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 011111 1223333 12233444443 5555555554321 111111100 0 0
Q ss_pred C-----hHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhh
Q psy12605 626 L-----LPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQ 700 (845)
Q Consensus 626 ~-----l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (845)
. .......+ ..+..+.+.++.... . - +... ... .++
T Consensus 594 ~~~~~d~~~~~~~l-----------------------~~l~~l~~~l~~~~~--~-----~--~~~~------~~~-~~l 634 (852)
T 4fdd_A 594 QYEAPDKDFMIVAL-----------------------DLLSGLAEGLGGNIE--Q-----L--VARS------NIL-TLM 634 (852)
T ss_dssp TSCCCCTHHHHHHH-----------------------HHHHHHHHHHGGGGH--H-----H--HHTC------CHH-HHH
T ss_pred ccCCCcchHHHHHH-----------------------HHHHHHHHHHhHhHH--H-----H--hcCC------cHH-HHH
Confidence 0 00000000 000111111100000 0 0 0000 000 011
Q ss_pred hccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy12605 701 LMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMI 780 (845)
Q Consensus 701 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~ 780 (845)
+..+.+.++.+|..+.++++.++... +......+. .+++.++..|...+..++..|++++..+....+..+.+|..
T Consensus 635 ~~~l~~~~~~vr~~a~~~l~~l~~~~-~~~~~~~l~-~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~-- 710 (852)
T 4fdd_A 635 YQCMQDKMPEVRQSSFALLGDLTKAC-FQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-- 710 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHC-GGGTGGGHH-HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTH--
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHh-hHHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHH--
Confidence 22236677899999999999998433 333333333 27788888888888899999999999998876554444432
Q ss_pred HHhChHHHHHhhhcCC--CHHHHHHHHHHHHHh
Q psy12605 781 EECGGLDKIEMLQNHE--NVEIYKLAYDIIERY 811 (845)
Q Consensus 781 ~e~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~ 811 (845)
..+..|..++.++ ...+.+.|...+-++
T Consensus 711 ---~il~~L~~~l~~~~~~~~~~~~a~~~igrl 740 (852)
T 4fdd_A 711 ---MVLHQLVEIINRPNTPKTLLENTAITIGRL 740 (852)
T ss_dssp ---HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 3345555555544 345666555555444
No 37
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=7.7e-21 Score=189.88 Aligned_cols=200 Identities=38% Similarity=0.554 Sum_probs=187.4
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
..+..+.|+.++.+++++ ++..|+|+|.+++..+.+....+.+.|+++.|+.+|.
T Consensus 10 ~~~~~~~l~~LL~s~~~~-------------------------v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 64 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQ-------------------------ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64 (210)
T ss_dssp ---CHHHHHHHTTCSCHH-------------------------HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred ccchhHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 457788999999999988 9999999999999888888888999999999999999
Q ss_pred CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHH
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKII 373 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv 373 (845)
++++.++..|+++|+|++.+++..+..+.+.|+++.|+.+|.++++.++..|+|+|+|++.+.+...+.+++.|+++.|+
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence 99999999999999999988888889999999999999999999999999999999999999898888899999999999
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 374 ANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 374 ~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++.+. ++.++..|+++|.+++.++++.+..+.+.|+++.|++++.++++.++..|+++|.+++.
T Consensus 145 ~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 145 QLLSSP-----NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTCS-----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCC-----CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999874 78999999999999999989999999999999999999999999999999999999975
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=2.7e-20 Score=185.91 Aligned_cols=200 Identities=34% Similarity=0.555 Sum_probs=186.9
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
..+..+.|+.+|.++++.++..|+++|++++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 55888999999999999999999999999998888888999999999999999999999999999999999998889998
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
..+++.|+++.|+.+|.+. ++.++..|+|+|++++.++++....+.+.|+++.|++++.++++.++..|+++|++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999884 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 441 IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 441 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
++..++..+..+.+.|+++.|+.++.+ .+.++++.++|+|.+|+.
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 999989999999999999999999985 456899999999999985
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=9e-21 Score=196.97 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=171.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-hhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhh
Q psy12605 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 181 (845)
Q Consensus 103 ~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~-lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~l 181 (845)
.+-+..|+..|..++. +.++...+...|++|+|+. +|+++++++++.|+|+|++++.+++..++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3578899999999986 4778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
|.++.+..+++.|+|+|++++++.++........+++|.|+.++.+.++. ++..|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~-------------------------v~~~A 187 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK-------------------------LKVKS 187 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH-------------------------HHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH-------------------------HHHHH
Confidence 98655678999999999999998755444455678999999999998888 99999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
+|+|++++.++++.++.+++.|++++|+.+|.+++..++..|+++|++++.+.+..
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 99999999888888899999999999999999999999999999999999875443
No 40
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=183.67 Aligned_cols=210 Identities=20% Similarity=0.153 Sum_probs=168.9
Q ss_pred CHHHHHHhhccCCCh--hHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 89 ILPVLVECLERSDRP--NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~--~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+|.||++|. ++++ +++..|+++|.+++.++++++..+++.|+||+|+++|+++++++++.|+|+|+||+.++++++
T Consensus 9 ~i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999995 5566 889999999999998889999999999999999999999999999999999999998889999
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc---CCchhhHHHHHHHhhh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH---HDTSVSIYLWLSIIEK 243 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~~~~~~~~l~~~ 243 (845)
..+.+.|+||+|+++|.+..+.++++.|+.+|+||+....... ....+++|.|+.++.. ...+. .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~--~i~~~~i~~Lv~ll~~p~sG~~~~-------~~~~ 158 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN--LMITEALLTLTENIIIPFSGWPEG-------DYPK 158 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH--HHHHHHHHHHCCCCCHHHHCCCGG-------GCCC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH--HHHhccHHHHHHHHhccccCCccc-------cccc
Confidence 9999999999999999854467899999999999997664333 2345689999987631 10000 0000
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhccC------CchhhHHHHHHHHHHHhcC
Q psy12605 244 NPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLLSH------KEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 244 ~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~------~~~~v~~~al~~L~nl~~~ 313 (845)
+ .-..+.+++..|.++|.+|+..+.+.++.+.+. |+++.|+.+++. .+.+.++.++.+|.||+..
T Consensus 159 -~----~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 159 -A----NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp -C----CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred -c----cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 0 000011289999999999998877778888776 778999999954 3567999999999999864
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.82 E-value=2e-18 Score=201.13 Aligned_cols=524 Identities=13% Similarity=0.091 Sum_probs=359.2
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL 135 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~ 135 (845)
++++.++..++..|..+...-... -....+++.|..++ .++++.+|..|+.+|.+++...+.. .+....+|.
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~----~~~~~ll~~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~ 130 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGP----EYVHCLLPPLESLA-TVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPL 130 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSG----GGGGGGHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhccCcH----HHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHH
Confidence 667888888888887665431111 01234678888877 4678899999999999999754332 223346778
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHh
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 215 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 215 (845)
+..+..+++...|..|+.+++.++...+.. . ....++.+..++.++ +..+|..++.+|..++..... .....
T Consensus 131 l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~-~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~~~~~ 202 (588)
T 1b3u_A 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V-KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---DNVKS 202 (588)
T ss_dssp HHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---HHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH---HhHHH
Confidence 888888888999999999999998654321 1 122467777777665 568999999999999976521 12346
Q ss_pred hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC
Q psy12605 216 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295 (845)
Q Consensus 216 ~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 295 (845)
..+|.+..++.++++. ++..|+.+|..++...+.. .....+++.+..++.++
T Consensus 203 ~l~~~l~~~~~d~~~~-------------------------vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~ 254 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDS-------------------------VRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDK 254 (588)
T ss_dssp THHHHHHHHHTCSCHH-------------------------HHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHhcCCcHH-------------------------HHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCC
Confidence 7889999988888777 8888888888877543221 12345678888888899
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH-HHHHHhcCChHHHHH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ-VQAVIDAGLLPKIIA 374 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~Lv~ 374 (845)
+..+|..|+.+|+.++...+. ......+++.+..++.+.++.+|..|+++|..++...... ........++|.+..
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~ 331 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence 999999999999999753211 1122357889999999999999999999999987653321 111223456788888
Q ss_pred HhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 375 NLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN 454 (845)
Q Consensus 375 lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 454 (845)
++.+ .++.+|..+++++..++..-.. .......++.+..++.+++++||..++.+++.+....... ...
T Consensus 332 ~l~d-----~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~ 400 (588)
T 1b3u_A 332 LVSD-----ANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLS 400 (588)
T ss_dssp HHTC-----SCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHH
T ss_pred HhcC-----CCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHH
Confidence 8876 4789999999999998752211 1122347889999999999999999999999887532110 011
Q ss_pred CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--HHhhhcCchhhH
Q psy12605 455 MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISK 532 (845)
Q Consensus 455 ~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~--l~~l~~~~~~~~ 532 (845)
...++.+..++.+ .+..++..++.++..++....+. .....+++.+..++.+.+..|+..+. +..+...
T Consensus 401 ~~~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~----- 471 (588)
T 1b3u_A 401 QSLLPAIVELAED-AKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK----- 471 (588)
T ss_dssp HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-----
Confidence 2345667766654 45678888888998887643211 11134678888888888777765532 2222110
Q ss_pred HHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhcc
Q psy12605 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612 (845)
Q Consensus 533 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~ 612 (845)
+ +.+ .....++|.+..++.+++..+|..++++++.++.
T Consensus 472 ---------------~----------------------~~~-----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 472 ---------------F----------------------GKE-----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp ---------------H----------------------CHH-----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred ---------------h----------------------Cch-----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 0 000 0012345666667778889999999999999874
Q ss_pred CCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcch
Q psy12605 613 GNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTL 692 (845)
Q Consensus 613 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (845)
.... ......++|.+.+.+
T Consensus 510 ~~~~---~~~~~~~~~~l~~~l---------------------------------------------------------- 528 (588)
T 1b3u_A 510 VCGQ---DITTKHMLPTVLRMA---------------------------------------------------------- 528 (588)
T ss_dssp HHHH---HHHHHHTHHHHHHGG----------------------------------------------------------
T ss_pred hcCH---HHHHHHHHHHHHhhC----------------------------------------------------------
Confidence 3211 111223555555444
Q ss_pred hhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHH
Q psy12605 693 FAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNM 765 (845)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l 765 (845)
.+.++++|..++++++.++.....+. ....+++.|..++.+.|.+++..|..+|..+
T Consensus 529 ------------~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 529 ------------GDPVANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp ------------GCSCHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 56778999999999999985433322 2235666677778889999999999998765
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.82 E-value=8.4e-18 Score=205.35 Aligned_cols=635 Identities=13% Similarity=0.139 Sum_probs=390.6
Q ss_pred cHHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChh
Q psy12605 45 NLDMLVVEAA-RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSA 122 (845)
Q Consensus 45 ~i~~lv~~~l-~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~ 122 (845)
.+.+++ ... .++|+..+.+|...|.++...+ ..|.++.|++++..+ .++.+|..|+..|.+.....-.
T Consensus 5 ~l~~~L-~~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~ 74 (861)
T 2bpt_A 5 EFAQLL-ENSILSPDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHH-HHcccCcCHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcCh
Confidence 456777 677 8899999999999998864321 023577888988543 4678999999999997543210
Q ss_pred hH--------HH-H---HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHH
Q psy12605 123 QT--------QE-V---VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPIS 189 (845)
Q Consensus 123 ~~--------~~-i---~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~ 189 (845)
.. .. + .....-+.|++.|.++++.++..++.+|+.++... +... -...++.|+..+.++.+..
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~----w~~ll~~L~~~l~~~~~~~ 150 (861)
T 2bpt_A 75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHH
T ss_pred HHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc----cHHHHHHHHHHHhcCCCHH
Confidence 00 00 0 11234467888899999999999999999987532 1000 0124677778887653557
Q ss_pred HHHHHHHHHHHhhcCCCCCC--ChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHH
Q psy12605 190 FLRNVTWVIVNLCRNKDPPP--SMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWAL 265 (845)
Q Consensus 190 ~~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L 265 (845)
++..++.++..+++...+.. .......+++.+...+.++ ++. ++..++.++
T Consensus 151 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~-------------------------vr~~al~~l 205 (861)
T 2bpt_A 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKA-------------------------VRLAALNAL 205 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHH-------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHH-------------------------HHHHHHHHH
Confidence 89999999999998653321 1234566778888888776 555 777788887
Q ss_pred HHhhcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHH
Q psy12605 266 SYLTDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344 (845)
Q Consensus 266 ~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~ 344 (845)
..+...-..... ......+++.+...+.++++.++..++.+|..++...+..........+++.+...+.+.++.++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~ 285 (861)
T 2bpt_A 206 ADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASM 285 (861)
T ss_dssp HHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 765432211100 0001224566677778889999999999999998653332111122145666777778889999999
Q ss_pred HHHHHHHhhcCChH-----------------HHHHHHhcCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 345 AVWFLSNITAGNQA-----------------QVQAVIDAGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 345 a~~~L~nl~~~~~~-----------------~~~~l~~~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
|+.++..++..... .....+ ..++|.++..+..... .++++.++..+..++..++...++
T Consensus 286 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~ 364 (861)
T 2bpt_A 286 TVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN 364 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH
Confidence 99999888654211 111111 4467788888765321 113467899999999998863221
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-Q-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
.. . ...++.+...+.+.+..+|..|+++++.++.... . ....+ . .+++.++..+.+. +..++..++|+++.
T Consensus 365 ~~---~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~-~il~~l~~~l~d~-~~~vr~~a~~~l~~ 437 (861)
T 2bpt_A 365 HI---L-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-H-QALPSILNLMNDQ-SLQVKETTAWCIGR 437 (861)
T ss_dssp GG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H-HHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred hH---H-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-H-HHHHHHHHHcCCC-cHHHHHHHHHHHHH
Confidence 11 1 1245677788889999999999999999997542 2 22222 2 3567777777654 55788899999999
Q ss_pred hhcCCCCC-CChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCc-----hhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 484 LCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNP-----QISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 484 L~~~~~~~-~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~-----~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
++....+. .........++.+...+.+. +.+... || +..+...- ...... -..+++.++..+.+.+.+.
T Consensus 438 l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~--~~~il~~L~~~l~~~d~~~ 514 (861)
T 2bpt_A 438 IADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF--YPALVDGLIGAANRIDNEF 514 (861)
T ss_dssp HHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG--HHHHHHHHHHHHTCSCCGG
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH--HHHHHHHHHHHHhCcCcch
Confidence 98754221 12345677888888888765 667655 56 55554321 111011 1256777888887655444
Q ss_pred ccccccccccccccCCChhhHHHHHhCCcccchHHhhcC---------------CChhHHHHHHHHHhhhccCCHHHHHH
Q psy12605 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH---------------PKEKICKEAVWFLSNITAGNQAQVQA 620 (845)
Q Consensus 556 ~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~---------------~~~~v~~~a~~~Lsnl~~~~~~~~~~ 620 (845)
.++..++.+++.++............ .+++.+...+.. ....++..++.+|++++......+..
T Consensus 515 ~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 515 NARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 44555666776664432221111111 233444444431 13467788888888887543321111
Q ss_pred HHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhh
Q psy12605 621 VIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQ 700 (845)
Q Consensus 621 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (845)
+.+ .+++.+++.+
T Consensus 594 ~~~-~l~~~l~~~l------------------------------------------------------------------ 606 (861)
T 2bpt_A 594 VAD-MLMGLFFRLL------------------------------------------------------------------ 606 (861)
T ss_dssp GHH-HHHHHHHHHH------------------------------------------------------------------
T ss_pred HHH-HHHHHHHHHH------------------------------------------------------------------
Confidence 111 1222222222
Q ss_pred hccCCCCCc-cchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy12605 701 LMFFPQGEF-QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANM 779 (845)
Q Consensus 701 ~~~~~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~ 779 (845)
...++ .++..+..+++.++.... +.....+. .+++.+...|...+++++..++.++..+.+..+..+.+|...
T Consensus 607 ----~~~~~~~v~~~~~~~l~~l~~~~~-~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 680 (861)
T 2bpt_A 607 ----EKKDSAFIEDDVFYAISALAASLG-KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDA 680 (861)
T ss_dssp ----HSTTGGGTHHHHHHHHHHHHHHHG-GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHH
T ss_pred ----ccCCCCcHHHHHHHHHHHHHHHHh-hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHH
Confidence 22333 789999999998873222 12222222 377888888887888999999999999998766554444332
Q ss_pred HHHhChHHHHHhhhcCCC--HHHHHHHHHHH
Q psy12605 780 IEECGGLDKIEMLQNHEN--VEIYKLAYDII 808 (845)
Q Consensus 780 ~~e~g~~~~L~~l~~~~~--~~v~~~a~~~l 808 (845)
+ ++.+...+.+++ .+++..|...+
T Consensus 681 l-----~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 681 M-----MNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp H-----HHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred H-----HHHHHHHhCCccccHhhhHHHHHHH
Confidence 2 233333333332 45665554444
No 43
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=172.56 Aligned_cols=199 Identities=12% Similarity=0.146 Sum_probs=174.1
Q ss_pred chhhHHhhccCCch--hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 284 VVPSLIPLLSHKEV--KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.++.++.+|.++++ .++..|+.+|.+++.+++..+..+.+.|++|.|+++|.+++++++..|+|+|.|++.++++.+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999998887 8999999999999998888899999999999999999999999999999999999988899999
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC----------------C
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM----------------S 425 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~----------------~ 425 (845)
.+.+.|++|.|+++|.+. .+.+++..|+.+|++++..+ +.+..+.+ ++++.|++++. .
T Consensus 89 ~I~~~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHcCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 999999999999999864 37899999999999998754 45566665 46999988763 1
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHhC-CChHHHHhccCC-----CCChhHHHHHHHHHHHhhcCC
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIKP-----DIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-g~l~~L~~ll~~-----~~~~~~~~~~~~~l~nL~~~~ 488 (845)
.+++++..|.++|.|++..+++.|+.+.++ |+++.|+.+++. ..+.+.+++++.+|.||+..-
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 366899999999999999989999999987 567999999873 234578999999999999754
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.79 E-value=4.9e-17 Score=198.56 Aligned_cols=611 Identities=14% Similarity=0.106 Sum_probs=367.2
Q ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCCcc-------HHH-H---HhcCCHHHHHHhhccCCChhHHHHHHHHH
Q psy12605 47 DMLVVEAARK--DNPELQLLAVQSARKLLSSDKNPP-------IEA-L---IHSGILPVLVECLERSDRPNLQFEAAWAL 113 (845)
Q Consensus 47 ~~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~~~-------~~~-i---~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L 113 (845)
..++ ..+.+ .++.++..|+..|++.+....... +.. + ....+-+.|++.|. ++++.+|..++.+|
T Consensus 42 ~~l~-~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l 119 (861)
T 2bpt_A 42 GLSS-QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLI 119 (861)
T ss_dssp HHHH-HHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHH-HHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3445 55654 368899999999998764321000 010 0 12234567888884 56789999999999
Q ss_pred HHHhcCC-hhhHHHHHHcCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCh-hhH--HHHHhcCChhhHHhhhcCCC-C
Q psy12605 114 TNIASGT-SAQTQEVVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGP-QLR--DYVINMGVVPPLLSFIKPDI-P 187 (845)
Q Consensus 114 ~~la~~~-~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~-~~r--~~i~~~g~i~~Lv~ll~~~~-~ 187 (845)
..++... +... -.+.+|.|++.+.++ ++.+++.++.+|+.++.... +.+ .. .....++.+...+.++. +
T Consensus 120 ~~i~~~~~p~~~----w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~ 194 (861)
T 2bpt_A 120 AAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETS 194 (861)
T ss_dssp HHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHhhCcccc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCC
Confidence 9998642 1100 023678888999988 99999999999999986421 110 00 01123556666666652 5
Q ss_pred HHHHHHHHHHHHHhhcCCCC-CCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH
Q psy12605 188 ISFLRNVTWVIVNLCRNKDP-PPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266 (845)
Q Consensus 188 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~ 266 (845)
..++..++.++.++...-.. ..........++.+...+.+.+++ ++..++.+|.
T Consensus 195 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-------------------------~r~~a~~~l~ 249 (861)
T 2bpt_A 195 KAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE-------------------------VQAAAFGCLC 249 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHH
Confidence 68999999999987542210 001111234677777777777776 8888888888
Q ss_pred HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh-----------------hHHHHhcCCccch
Q psy12605 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE-----------------QTQVILNCDALSH 329 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-----------------~~~~i~~~~~l~~ 329 (845)
.+....++.........+++.+...+.+.++.++..|+.++..++..... ...... ..+++.
T Consensus 250 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ 328 (861)
T 2bpt_A 250 KIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPN 328 (861)
T ss_dssp HHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHH
Confidence 87765444333333336677777888888999999999999998754211 001111 246677
Q ss_pred hhHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 330 FPALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 330 L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
++..+... +..+|..+..+|..++....+. ++ ..+++.+.+.+.+ .++.+|..|+++++.++.+
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~-----~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITA-----DNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCC-----CChhHHHHHHHHHHHHHcC
Confidence 77777542 2468889999998885432211 00 1233444444444 4789999999999999987
Q ss_pred Ch-HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCChHHHHhccCCCCChhHHHHHHHH
Q psy12605 403 TS-AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR-DYVINMGVVPPLLSFIKPDIPISFLRNVTWV 480 (845)
Q Consensus 403 ~~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~ 480 (845)
.. +....... ..++.++..+.++++.+|..++|+|++++......- ..-.-..+++.++..+.+. ..++..++|+
T Consensus 400 ~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~a 476 (861)
T 2bpt_A 400 PDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWT 476 (861)
T ss_dssp SCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHH
Confidence 53 33333332 468889999999999999999999999985311000 0000112456777777653 6788899999
Q ss_pred HHHhhcCCCC---CCChhHHHhHHHHHHHhhcCCC--hhHHHHHH--HHhhhc-CchhhHHHHhhhhhhHHHHhhhccCC
Q psy12605 481 IVNLCRNKDP---PPSMSTIIELLPALNILIHHHD--TSVSIYLW--LSIIEK-NPQISKILVSKMKVCSRYLYYLSHNS 552 (845)
Q Consensus 481 l~nL~~~~~~---~~~~~~~~~~l~~l~~ll~~~d--~~v~~~~~--l~~l~~-~~~~~~~~~~~~~~~~~L~~ll~~~~ 552 (845)
+.+++..... ..-...+..+++.+..++.+.| +.++..+. +..+.. .+......+ ..+++.++..+...-
T Consensus 477 l~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 477 IINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQTM 554 (861)
T ss_dssp HHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHHHHH
Confidence 9999886431 1122456678888888887544 55665433 444432 121111111 134444555443210
Q ss_pred -------------CCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCCh-hHHHHHHHHHhhhccCCHHHH
Q psy12605 553 -------------GPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE-KICKEAVWFLSNITAGNQAQV 618 (845)
Q Consensus 553 -------------~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~~Lsnl~~~~~~~~ 618 (845)
.....+..++.+++++...-...... .-..+++.+..++++.++ .++..++++++.++.......
T Consensus 555 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~ 633 (861)
T 2bpt_A 555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF 633 (861)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG
T ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH
Confidence 00011122333333332211110000 011345566667777766 899999999998874322222
Q ss_pred HHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhh
Q psy12605 619 QAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISR 698 (845)
Q Consensus 619 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (845)
..++. .++|.+.+.+
T Consensus 634 ~~~l~-~i~~~l~~~l---------------------------------------------------------------- 648 (861)
T 2bpt_A 634 EKYLE-TFSPYLLKAL---------------------------------------------------------------- 648 (861)
T ss_dssp HHHHH-HHHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHh----------------------------------------------------------------
Confidence 22211 1333333333
Q ss_pred hhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhcccc--HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy12605 699 FQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKD--AQVIQVVLDGINNMLKMADAQVETL 776 (845)
Q Consensus 699 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d--~~~~~~al~~L~~l~~~~~~~~~~~ 776 (845)
.+.+++++..++.+++.++.... +.....+ ..+++.++..+.+.+ ..++..++.++..++...+..+.+|
T Consensus 649 ------~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 720 (861)
T 2bpt_A 649 ------NQVDSPVSITAVGFIADISNSLE-EDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY 720 (861)
T ss_dssp ------HCTTSHHHHHHHHHHHHHHHHTG-GGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred ------ccccHHHHHHHHHHHHHHHHHhc-hhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 34567799999999998874322 2222222 256777778887754 8899999999999998766665554
Q ss_pred HH
Q psy12605 777 AN 778 (845)
Q Consensus 777 ~~ 778 (845)
..
T Consensus 721 l~ 722 (861)
T 2bpt_A 721 LN 722 (861)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.79 E-value=1.2e-17 Score=193.53 Aligned_cols=367 Identities=17% Similarity=0.199 Sum_probs=262.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.++- +.|.+++...+..++..+..+...+.+. ..+.+.+++++ .+++..+|+.+...+..++..+++...
T Consensus 15 ~~~i~-~~L~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~~~e~~~ 85 (591)
T 2vgl_B 15 IFELK-AELNNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCM-QTDNLELKKLVYLYLMNYAKSQPDMAI 85 (591)
T ss_dssp HHHHH-HHTTSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccCchHHH
Confidence 44555 7889999998888888888776666432 23577788888 577889999998899888765444432
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
-+++.+.+-|+++++.+|..|+++|+++. .++..+.+ ++.+..++.++ +..+|..|++++.++++..
T Consensus 86 -----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~ 152 (591)
T 2vgl_B 86 -----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE-DPYVRKTAAVCVAKLHDIN 152 (591)
T ss_dssp -----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS-CHHHHHHHHHHHHHHHHSS
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC-ChHHHHHHHHHHHHHHhhC
Confidence 26788889999999999999999999996 34444443 56788888766 5689999999999999854
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+ ......+.++.+..++.++++. ++..|+++|..+...+++....-...+.+
T Consensus 153 p---~~~~~~~~~~~l~~lL~d~d~~-------------------------V~~~A~~aL~~i~~~~~~~~~~~l~~~~~ 204 (591)
T 2vgl_B 153 A---QMVEDQGFLDSLRDLIADSNPM-------------------------VVANAVAALSEISESHPNSNLLDLNPQNI 204 (591)
T ss_dssp C---CCHHHHHHHHHHHHTTSCSCHH-------------------------HHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred h---hhcccccHHHHHHHHhCCCChh-------------------------HHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence 2 2233357899999999988888 99999999999987654320000112345
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC---ChHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG---NQAQVQA 362 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~---~~~~~~~ 362 (845)
..|+..+.+.++..+...+++++.++..++.... .+++.+..++.+.++.++.+|++++..+... +++..+.
T Consensus 205 ~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~ 279 (591)
T 2vgl_B 205 NKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM 279 (591)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH
T ss_pred HHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 6677777778888999999999988755443322 3567788888999999999999999998642 2333333
Q ss_pred HHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
+ -..+.+.|+.++. .++++|..|+.++..++...++.... .+..+.... +++..|+..+++.|.+++
T Consensus 280 ~-~~~~~~~L~~L~~------~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~~~~-~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 280 L-LKKLAPPLVTLLS------GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVFFVKY-NDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp H-HHHTHHHHHHHTT------SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTSCCT-TSCHHHHHHHHHHHHHTC
T ss_pred H-HHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhheecc-CChHHHHHHHHHHHHHHC
Confidence 2 2345677776653 27899999999999998754432111 122222222 344889999999999988
Q ss_pred cCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 443 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 443 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
.... .. .+++.|..++.+ .+.++++.+++++++++...
T Consensus 347 ~~~n-v~------~iv~~L~~~l~~-~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 347 SQAN-IA------QVLAELKEYATE-VDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp CSST-HH------HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTC
T ss_pred Chhh-HH------HHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhC
Confidence 5442 21 134556666654 35578888889999888654
No 46
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.79 E-value=6.2e-16 Score=170.87 Aligned_cols=450 Identities=14% Similarity=0.137 Sum_probs=323.4
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCC
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~ 120 (845)
....++.++-+.-++.-.+.+..|+..|+.+... ...-+.++++|.|+..|+.+ ++.++-..++.+|.++-..+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 3466888883344567889999999999987432 23455677899999999655 56788888999998876544
Q ss_pred hh-----------------hHHHHH-HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhc-CChhhHHh
Q psy12605 121 SA-----------------QTQEVV-AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINM-GVVPPLLS 180 (845)
Q Consensus 121 ~~-----------------~~~~i~-~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~-g~i~~Lv~ 180 (845)
.+ +.+.+. +.+.|+.|+.+|++++..+|..++.+|..|+...+. .++.+... ++++.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 32 223333 478999999999999999999999999999988877 88888855 89999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHH
Q psy12605 181 FIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVD 260 (845)
Q Consensus 181 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (845)
+|..+ .+.+|..++..|.++++++...++....+|+++.|+.++..+..- ..-.+..+
T Consensus 174 lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~---------------------~Ggivv~D 231 (651)
T 3grl_A 174 LLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS---------------------DGGIVVED 231 (651)
T ss_dssp GGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGG---------------------GSHHHHHH
T ss_pred HHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCC---------------------ccchhHHH
Confidence 99877 568899999999999999988888889999999999999865431 00018899
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchh------h---HHHHHHHHHHHhcCC------hhhHHHHhcCC
Q psy12605 261 TVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVK------V---QTASLRAVGNIVTGT------DEQTQVILNCD 325 (845)
Q Consensus 261 a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~------v---~~~al~~L~nl~~~~------~~~~~~i~~~~ 325 (845)
|+..+.+|.+++..+...+.+.|.++.|..+|..+++. . ...++.+++-++..+ ...+..+.++|
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 99999999999988889999999999999999644321 2 224777888887653 24677888999
Q ss_pred ccchhhHhhcCC--chhhHHHHHHHHHHhhcCChHHHHHHHhcC-----ChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 326 ALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAG-----LLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 326 ~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~-----~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
+++.|++++.+. ...++..|+.+++.+..+++.....+.+.. -.|.++.++.+-.......++|.+|+.++..
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 999999999764 578999999999999999999888876543 2344554432211111568999999999999
Q ss_pred HhcCChHhHHHHHHc------C----Ch---HHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc
Q psy12605 399 IASGTSAQTQEVVAA------G----AV---PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 465 (845)
Q Consensus 399 l~~~~~~~~~~l~~~------g----~i---~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll 465 (845)
...++++.+..++.. + .+ ..+..-+-+.++--.--|+.+|..+..++++.+..+.+--.- .
T Consensus 392 y~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~------~ 465 (651)
T 3grl_A 392 FLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLA------T 465 (651)
T ss_dssp HHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCC------C
T ss_pred HHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCccc------c
Confidence 999988777666654 0 11 124445555555333446777888888888877665442100 0
Q ss_pred C-CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhh-cCCChhHHHH-H-H-HHhhhcCchhhHHHHhhhhh
Q psy12605 466 K-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI-HHHDTSVSIY-L-W-LSIIEKNPQISKILVSKMKV 540 (845)
Q Consensus 466 ~-~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll-~~~d~~v~~~-~-~-l~~l~~~~~~~~~~~~~~~~ 540 (845)
. ...+.. .++.+...+ ...|+.+... + + ...|.++|..-..+..+...
T Consensus 466 ~~ge~~vt---------------------------liq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~ 518 (651)
T 3grl_A 466 SIGNPPVS---------------------------LLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSAN 518 (651)
T ss_dssp CTTCCCCB---------------------------HHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTH
T ss_pred cCCCCccc---------------------------HHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCch
Confidence 0 011111 222222222 2234444332 2 2 45567788888888888888
Q ss_pred hHHHHhhhccC
Q psy12605 541 CSRYLYYLSHN 551 (845)
Q Consensus 541 ~~~L~~ll~~~ 551 (845)
++.|+..+.++
T Consensus 519 l~~L~~~i~~~ 529 (651)
T 3grl_A 519 VPFLTGQIAEN 529 (651)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhc
Confidence 88888777543
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.77 E-value=4.8e-17 Score=199.00 Aligned_cols=642 Identities=13% Similarity=0.131 Sum_probs=373.7
Q ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCC-------ccHH---HHHhcCCHHHHHHhhccCCChhHHHHHHHHHH
Q psy12605 47 DMLVVEAARK--DNPELQLLAVQSARKLLSSDKN-------PPIE---ALIHSGILPVLVECLERSDRPNLQFEAAWALT 114 (845)
Q Consensus 47 ~~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~-------~~~~---~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~ 114 (845)
..++ ..+.+ .++..|..|...|++.+..... ..+. .-....+-+.|++.|. +.++.+ ..++.++.
T Consensus 38 ~~L~-~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~-~~~~~~-~~~~~~l~ 114 (876)
T 1qgr_A 38 VELS-RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG-TETYRP-SSASQCVA 114 (876)
T ss_dssp HHHH-HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-TCCSSS-CHHHHHHH
T ss_pred HHHH-HHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhC-CCcHHH-HHHHHHHH
Confidence 3455 55655 4688899999999997753210 0000 0011223445888884 455677 88899999
Q ss_pred HHhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCCC-CHH
Q psy12605 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPDI-PIS 189 (845)
Q Consensus 115 ~la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~~-~~~ 189 (845)
.++..... ... -...+|.|++.+.++ ++.++..++.+|+.++.... .+.+.. ...++.+...+..+. +..
T Consensus 115 ~i~~~~~~-~~~--w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~ 189 (876)
T 1qgr_A 115 GIACAEIP-VNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNN 189 (876)
T ss_dssp HHHHHHGG-GTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHH
T ss_pred HHHHhhCc-ccc--cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHH
Confidence 98753100 000 135789999999998 89999999999999985421 111111 134566777776653 568
Q ss_pred HHHHHHHHHHHhhcCCCCC-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 190 FLRNVTWVIVNLCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 190 ~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
++..|+.++.+++..-... .........++.+...+.+.+++ ++..+++++..+
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~-------------------------vr~~a~~~l~~l 244 (876)
T 1qgr_A 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR-------------------------VRVAALQNLVKI 244 (876)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHH-------------------------HHHHHHHHHHHH
Confidence 9999999999987642110 01111124677777777666666 888899999988
Q ss_pred hcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh---------------------hHHHHhcCCcc
Q psy12605 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE---------------------QTQVILNCDAL 327 (845)
Q Consensus 269 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~i~~~~~l 327 (845)
...........+...+++.++..+.+.++.++..|+.++.+++..... ...... ...+
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll 323 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHh
Confidence 876555444444557788888888888899999999999998753210 000000 1345
Q ss_pred chhhHhhcC-------CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 328 SHFPALLTH-------PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 328 ~~L~~lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.++..+.. .+..+|..|..+|..++....+. ++ ..+++.+...+.+ .++.+|..|+++++.++
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~-----~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKN-----PDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccC-----CChHHHHHHHHHHHHHH
Confidence 666666642 34578899999998885432211 11 1234444455544 47999999999999999
Q ss_pred cCCh-HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHH---HHHHHhCCChHHHHhccCCCCChhHHHH
Q psy12605 401 SGTS-AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL---RDYVINMGVVPPLLSFIKPDIPISFLRN 476 (845)
Q Consensus 401 ~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~l~~~g~l~~L~~ll~~~~~~~~~~~ 476 (845)
.+.. +..... -...++.++..+.++++.||..|+++|++++...+.. ... -..+++.++..+.+. ..++..
T Consensus 395 ~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l~~~--~~v~~~ 469 (876)
T 1qgr_A 395 EGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSAE--PRVASN 469 (876)
T ss_dssp SSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHTTSC--HHHHHH
T ss_pred cCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHHcCC--HHHHHH
Confidence 8664 333222 2347889999999999999999999999998753221 001 113456677777653 678889
Q ss_pred HHHHHHHhhcCCC-------------CCCChhHHHhHHHHHHHhhcCCC---hhHHHHHH--H-----------------
Q psy12605 477 VTWVIVNLCRNKD-------------PPPSMSTIIELLPALNILIHHHD---TSVSIYLW--L----------------- 521 (845)
Q Consensus 477 ~~~~l~nL~~~~~-------------~~~~~~~~~~~l~~l~~ll~~~d---~~v~~~~~--l----------------- 521 (845)
++|++.+++.... ...-...+..+++.+...+...+ ..+...++ +
T Consensus 470 a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 549 (876)
T 1qgr_A 470 VCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 9999999987521 01112345667777777766432 22221111 1
Q ss_pred ---------------------------------------HhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccc
Q psy12605 522 ---------------------------------------SIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQH 562 (845)
Q Consensus 522 ---------------------------------------~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l 562 (845)
..+...-......-.-..+++.++..+.+.+....++..++
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHH
Confidence 11110000000000012345566666666532212233455
Q ss_pred cccccccCCChhhHHHHHhCCcccchHHhhcCC-ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 563 SIYMCVSPGTDEQTQVILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 563 ~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
.+++.++..........+ ..+++.+...+.+. ++.++..++++++.++......+....+ .+++.+++.+.+
T Consensus 630 ~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~----- 702 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGN----- 702 (876)
T ss_dssp HHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCC-----
Confidence 566555432111111111 12567777778776 8899999999999987432211222111 223333333210
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHh
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISN 721 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 721 (845)
.+.+.++|..+++++++
T Consensus 703 ---------------------------------------------------------------~~~~~~~~~~~~~~l~~ 719 (876)
T 1qgr_A 703 ---------------------------------------------------------------ENVHRSVKPQILSVFGD 719 (876)
T ss_dssp ---------------------------------------------------------------TTSCGGGHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccccHHhhHHHHHHHHH
Confidence 12456899999999999
Q ss_pred hcccCCHHHHHHHHHcCCchHHhhhhccc----c-------HHHHHHHHHHHHHHHHhhHH----------HHHHHHHHH
Q psy12605 722 LTISGNRDQVAKLVQEGVIPPFCDLLSCK----D-------AQVIQVVLDGINNMLKMADA----------QVETLANMI 780 (845)
Q Consensus 722 l~~~~~~~~~~~l~~~~~i~~L~~~L~~~----d-------~~~~~~al~~L~~l~~~~~~----------~~~~~~~~~ 780 (845)
++....++ ....+ ..+++.+...++.. | ..++..++.++..++..... .+.+|...
T Consensus 720 i~~~~g~~-~~~~l-~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 796 (876)
T 1qgr_A 720 IALAIGGE-FKKYL-EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEF- 796 (876)
T ss_dssp HHHHHGGG-GGGGH-HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHH-
T ss_pred HHHHhchh-HHHHH-HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHH-
Confidence 97321111 11111 13455555555432 1 26788888888887765321 11122221
Q ss_pred HHhChHHHHHhhhcCC--CHHHHHHHHHHHHHhcC
Q psy12605 781 EECGGLDKIEMLQNHE--NVEIYKLAYDIIERYFS 813 (845)
Q Consensus 781 ~e~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~ 813 (845)
.+..+..+..++ +..+++.|...|..+..
T Consensus 797 ----i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 797 ----ILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp ----HHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 123344444555 67898888877776543
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.75 E-value=7.8e-15 Score=162.18 Aligned_cols=285 Identities=13% Similarity=0.175 Sum_probs=228.5
Q ss_pred ChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhh
Q psy12605 174 VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKIL 251 (845)
Q Consensus 174 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~ 251 (845)
.|+.|++-+.+.+-.+=|+.|+..|..+++... .....++++.|+..++.. |.+
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e-------------------- 77 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSE-------------------- 77 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHH--------------------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHH--------------------
Confidence 477777777777777889999999999987552 244567899999998764 555
Q ss_pred hhhHHHHHHHHHHHHHhhcCChh-----------------hHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcC
Q psy12605 252 VSKMKILVDTVWALSYLTDGGND-----------------QIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 252 ~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~ 313 (845)
+...++.+|.++...+.+ ... .+.+.+.++.|+.+|++.+..++.+++++|..++..
T Consensus 78 -----~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 78 -----IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp -----HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc
Confidence 777788888766443221 111 223557899999999999999999999999999988
Q ss_pred Chh-hHHHHhcC-CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHH
Q psy12605 314 TDE-QTQVILNC-DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFE 391 (845)
Q Consensus 314 ~~~-~~~~i~~~-~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~ 391 (845)
.+. .++.+... ++++.|+.+|++..+.+|.+++..|.+++.++.+..+.+.-.|+++.|+.++...+.. +...+...
T Consensus 153 r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~-~Ggivv~D 231 (651)
T 3grl_A 153 LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS-DGGIVVED 231 (651)
T ss_dssp SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGG-GSHHHHHH
T ss_pred CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCC-ccchhHHH
Confidence 776 66777755 9999999999999999999999999999999999888788899999999999987543 45678899
Q ss_pred HHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHH------HHHH---HHHHHHHhhcC------ChHHHHHHHhCC
Q psy12605 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN------VCEQ---AVWALGNIIGD------GPQLRDYVINMG 456 (845)
Q Consensus 392 a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~------v~~~---a~~~L~nl~~~------~~~~~~~l~~~g 456 (845)
+..++.++..+++.++..+.+.|+++.|..++..+.+. .... ++.++.-+... .+.+++.+.++|
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999865432 2222 44455555543 346788999999
Q ss_pred ChHHHHhccCC-CCChhHHHHHHHHHHHhhcCC
Q psy12605 457 VVPPLLSFIKP-DIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 457 ~l~~L~~ll~~-~~~~~~~~~~~~~l~nL~~~~ 488 (845)
++..|++++.. ..+..++..+..+++.++++.
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN 344 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGC 344 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999864 346788888999999999887
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.74 E-value=2.4e-16 Score=192.75 Aligned_cols=609 Identities=13% Similarity=0.114 Sum_probs=369.4
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+.+++ ..+.++|++.+..|...|+++.... ..++++.|++.|..+ .++.+|..|+.+|.+......+.
T Consensus 2 ~l~~~L-~~~~s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 2 ELITIL-EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp CHHHHH-HGGGCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred cHHHHH-HHhcCCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 355677 7788999999999999998854321 134678889988543 46789999999999965432111
Q ss_pred HHHH-----------HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHH
Q psy12605 124 TQEV-----------VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFL 191 (845)
Q Consensus 124 ~~~i-----------~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~ 191 (845)
++.. .....-+.+++.|.++++.+ ..++.+++.++...- ... .-...++.++..+.++. +..++
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~-~~~--~w~~ll~~l~~~l~~~~~~~~~r 147 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI-PVN--QWPELIPQLVANVTNPNSTEHMK 147 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG-GGT--CCTTHHHHHHHHHHCTTCCHHHH
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC-ccc--ccHHHHHHHHHHHhCCCCCHHHH
Confidence 1100 00112334888888888888 889999998874310 000 01235677778787653 45789
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~ 269 (845)
..++.+|..++....+..........++.+.+.+.++ +.. ++..+++++..+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~-------------------------vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN-------------------------VKLAATNALLNSL 202 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHH-------------------------HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHH-------------------------HHHHHHHHHHHHH
Confidence 9999999999875321111123345667777777665 344 7778888888776
Q ss_pred cCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHH
Q psy12605 270 DGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348 (845)
Q Consensus 270 ~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 348 (845)
..-..... ......+++.+...+.+++.+++..++.+|..++..........+...+++.++..+.+.++.++..++.+
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~ 282 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 43221110 01111356677777788889999999999999986554432333333577778887888889999999999
Q ss_pred HHHhhcCChH---------------------HHHHHHhcCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 349 LSNITAGNQA---------------------QVQAVIDAGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 349 L~nl~~~~~~---------------------~~~~l~~~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
+..++..... ..+..+ ..+++.+++.+..... ..+++.++..|..++..++...++
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~ 361 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH
Confidence 9888643210 000001 2356677777754211 014678999999999998764332
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-Q-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
. ++ ...++.+...+.++++.+|..|+++++.++.... + ....+ ...++.++..+.+. +..++..++|++++
T Consensus 362 ~---~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~-~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 362 D---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDP-SVVVRDTAAWTVGR 434 (876)
T ss_dssp G---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred h---hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 1 11 1356677788889999999999999999997543 3 22222 33677888888653 45788899999999
Q ss_pred hhcCCCCCC-ChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCch---------------hhHHHHhhhhhhHHHH
Q psy12605 484 LCRNKDPPP-SMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQ---------------ISKILVSKMKVCSRYL 545 (845)
Q Consensus 484 L~~~~~~~~-~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~---------------~~~~~~~~~~~~~~L~ 545 (845)
++....+.. ....+...++.+...+.+. +.+... +| +..+..... .... .-..+++.++
T Consensus 435 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~--~~~~il~~L~ 511 (876)
T 1qgr_A 435 ICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS--SFELIVQKLL 511 (876)
T ss_dssp HHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT--THHHHHHHHH
T ss_pred HHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH--hHHHHHHHHH
Confidence 998653321 2345678888888888774 666554 55 555543211 0000 0135677777
Q ss_pred hhhccCCCC-cccccccccccccccCCChhhHHHHHhCCcccchHHhhc-----------CCC----hhHHHHHHHHHhh
Q psy12605 546 YYLSHNSGP-MSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLT-----------HPK----EKICKEAVWFLSN 609 (845)
Q Consensus 546 ~ll~~~~~~-~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~-----------~~~----~~v~~~a~~~Lsn 609 (845)
.++...+.. ......++.+++.++.......... -..+++.+...+. +.+ ++++..++++++.
T Consensus 512 ~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~ 590 (876)
T 1qgr_A 512 ETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA-VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQN 590 (876)
T ss_dssp HHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHH-HHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHH-HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHH
Confidence 777765321 1222234444444422111101110 0122233333322 122 4677888999988
Q ss_pred hccCCH-HHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhcccc
Q psy12605 610 ITAGNQ-AQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688 (845)
Q Consensus 610 l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (845)
++.... ..+..+.. .++|.+++++.+
T Consensus 591 l~~~~~~~~~~~~~~-~l~~~l~~~l~~---------------------------------------------------- 617 (876)
T 1qgr_A 591 VLRKVQHQDALQISD-VVMASLLRMFQS---------------------------------------------------- 617 (876)
T ss_dssp HHTTSCHHHHHTTHH-HHHHHHHHHC------------------------------------------------------
T ss_pred HHHHhChhhhhHHHH-HHHHHHHHHHHh----------------------------------------------------
Confidence 876544 33332221 233344433310
Q ss_pred CcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc-cHHHHHHHHHHHHHHHH
Q psy12605 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK-DAQVIQVVLDGINNMLK 767 (845)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~-d~~~~~~al~~L~~l~~ 767 (845)
..+...++..++.+++.++... .......+. .+++.++..|.+. +..++..++.++..|.+
T Consensus 618 ----------------~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 679 (876)
T 1qgr_A 618 ----------------TAGSGGVQEDALMAVSTLVEVL-GGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCR 679 (876)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHH-GGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred ----------------ccCCCCccHHHHHHHHHHHHHH-HhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 1111467888999998887321 111112222 3667778888876 78999999999999988
Q ss_pred hhHHHHHH
Q psy12605 768 MADAQVET 775 (845)
Q Consensus 768 ~~~~~~~~ 775 (845)
.....+.+
T Consensus 680 ~~~~~~~~ 687 (876)
T 1qgr_A 680 ALQSNIIP 687 (876)
T ss_dssp HHGGGGHH
T ss_pred HHHHhhhh
Confidence 65544333
No 50
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.72 E-value=7.3e-16 Score=195.02 Aligned_cols=642 Identities=12% Similarity=0.104 Sum_probs=394.9
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.++.++ +.+.++|+..+..|...|.+.+...... .+.-....+++.|++.|. +.++.+|..|+.+|..++...++
T Consensus 7 ~l~~lL-~~l~s~d~~~R~~A~~~L~~~l~~~~~~-~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 7 HISNLL-EKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHH-HHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--
T ss_pred HHHHHH-HhcCCCCHhHHHHHHHHHHHHHcccccC-CChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--
Confidence 467888 8899999999999999999887643211 111112346888999994 77899999999999999875443
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh------HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL------RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 198 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~------r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 198 (845)
..+ ...++.|+..|.++++.+|..|+.+|+.++...... .... -...+|.|+..+....+..++..|+.++
T Consensus 82 ~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 82 YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 111 236788999999999999999999999998543321 1111 1235788888887433568999999999
Q ss_pred HHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 199 VNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
..++........ ......++.+...+.++++. ++..|+.++..++....+.
T Consensus 159 ~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~-------------------------vR~~a~~al~~l~~~~~~~--- 209 (1230)
T 1u6g_C 159 ADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLA-------------------------VRKRTIIALGHLVMSCGNI--- 209 (1230)
T ss_dssp HHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHH-------------------------HHHHHHHHHHHHTTTC------
T ss_pred HHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHH-------------------------HHHHHHHHHHHHHHhcCHH---
Confidence 999874322111 23567888888888887777 8899999999888754432
Q ss_pred HHhcCchhhHHhhccCC-chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 279 VIDSGVVPSLIPLLSHK-EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
+ -..+++.++..|.+. +..++..++.+++.++...+..... .-..+++.++..+.+.++++|..++.++..++...+
T Consensus 210 ~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 210 V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 1 224577777777443 3467888899999987643321111 112577888888888889999999999998876533
Q ss_pred HHHHHHHhcCChHHHHHHhhhcc---------------------c-----------ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 358 AQVQAVIDAGLLPKIIANLQKVG---------------------R-----------IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 358 ~~~~~l~~~~~i~~Lv~lL~~~~---------------------~-----------~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
......+ ..+++.++..+.... + ....+.+|..|+.++..++...++
T Consensus 288 ~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~ 366 (1230)
T 1u6g_C 288 KEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366 (1230)
T ss_dssp CCCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchh
Confidence 2111111 223444444332100 0 001356799999999999875443
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh----------------HHHHHH--HhCCChHHHHhccCC
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP----------------QLRDYV--INMGVVPPLLSFIKP 467 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~----------------~~~~~l--~~~g~l~~L~~ll~~ 467 (845)
....++ ...++.++..+.+.++++|..++.++..+..... .....+ .-..+++.+...+.+
T Consensus 367 ~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~ 445 (1230)
T 1u6g_C 367 MLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE 445 (1230)
T ss_dssp THHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc
Confidence 222222 4567888888888899999999998887764110 011111 111234444555654
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCCh--hHHHHHH--HHhhhc--CchhhHHHHhhhhhh
Q psy12605 468 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT--SVSIYLW--LSIIEK--NPQISKILVSKMKVC 541 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~--~v~~~~~--l~~l~~--~~~~~~~~~~~~~~~ 541 (845)
. +..++..++.+++.++...+. .-...+..+++.+..++.+... .+...++ +..+.. +++.....+ ..++
T Consensus 446 ~-~~~vr~~~~~~L~~l~~~~~~-~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~ll 521 (1230)
T 1u6g_C 446 K-SVKTRQCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALV 521 (1230)
T ss_dssp S-CHHHHHHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTH
T ss_pred C-CHHHHHHHHHHHHHHHHHchh-hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHH
Confidence 3 446677788888888876422 2234677889999988887653 5544322 332221 222111111 2567
Q ss_pred HHHHhhhccCCCCcccccccccccccccC--CC------hhhHHHHHhCCcccchHHhh--cCCChhHHHHHHHHHhhhc
Q psy12605 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVSP--GT------DEQTQVILNCDALSHFPALL--THPKEKICKEAVWFLSNIT 611 (845)
Q Consensus 542 ~~L~~ll~~~~~~~~~~~~~l~~l~nl~~--~~------~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~a~~~Lsnl~ 611 (845)
+.++..+.+.+..+ ...++.+++.++. +. ...... -..+++.+...+ .+.++.+|..|+.+++.++
T Consensus 522 p~L~~~l~d~~~~v--~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~ 597 (1230)
T 1u6g_C 522 PPVVACVGDPFYKI--TSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADIDQEVKERAISCMGQII 597 (1230)
T ss_dssp HHHHHHHTCSSHHH--HHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHH--HHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 77777766543322 1223444443321 11 011010 112455667777 5567899999999999887
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcc
Q psy12605 612 AGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFT 691 (845)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (845)
....... ...++.++..|..
T Consensus 598 ~~~g~~~-----~~~~~~~l~~L~~------------------------------------------------------- 617 (1230)
T 1u6g_C 598 CNLGDNL-----GSDLPNTLQIFLE------------------------------------------------------- 617 (1230)
T ss_dssp HHTGGGC-----CTHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHhCchh-----hhhHHHHHHHHHH-------------------------------------------------------
Confidence 4322111 1123344433310
Q ss_pred hhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHH
Q psy12605 692 LFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA 771 (845)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~ 771 (845)
.-.++..|..++.+++.++........... -..+++.|...+...+..++.+++.+|..++.....
T Consensus 618 -------------~l~~e~~r~~~~~al~~i~~~~~~~~~~~~-~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 618 -------------RLKNEITRLTTVKALTLIAGSPLKIDLRPV-LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp -------------HTTSSSHHHHHHHHHHHHTTCSSCCCCHHH-HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred -------------HhccchhHHHHHHHHHHHHhCccccchHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 011234677888888888732211111112 235677888888999999999999999999987643
Q ss_pred HH--HHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhcCcc
Q psy12605 772 QV--ETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 772 ~~--~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 815 (845)
.. ..+...+ ..+..+.+.++..+...+..+|.+++...
T Consensus 684 ~~~~~~v~~~l------~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 684 SLTAAMIDAVL------DELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp TCCHHHHHHHH------TTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHH------HHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 21 1111111 11123445677788888999999887654
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=1.2e-14 Score=168.12 Aligned_cols=363 Identities=16% Similarity=0.177 Sum_probs=256.7
Q ss_pred HHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q psy12605 53 AARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132 (845)
Q Consensus 53 ~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~ 132 (845)
.++++++..+..|+.++..+. .....+ .++|.+.++| .+.++.+|..|+.++.+++..+++.. .+.+.
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~---~~~~~~-----~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~ 161 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIR---VDKITE-----YLCEPLRKCL-KDEDPYVRKTAAVCVAKLHDINAQMV---EDQGF 161 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCC---SGGGHH-----HHHHHHHHHS-SCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHH
T ss_pred HcCCCCHHHHHHHHHHHHcCC---hHHHHH-----HHHHHHHHHc-CCCChHHHHHHHHHHHHHHhhChhhc---ccccH
Confidence 355666666666666665432 111122 2477789999 47899999999999999998666533 23578
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 212 (845)
++.|.++|+++++.++..|+.+|+.++.++++.+......+.++.|+..+... +...+..++.++..++.. ...
T Consensus 162 ~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~-----~~~ 235 (591)
T 2vgl_B 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPK-----DDR 235 (591)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCC-----SHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCC-----ChH
Confidence 89999999999999999999999999987753310000112355566666544 346666777777666532 223
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC---ChhhHHHHHhcCchhhHH
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG---GNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~Lv 289 (845)
....+++.+..++++.++. ++..|++++.++... +++..+.+ -..+.+.|+
T Consensus 236 ~~~~~l~~l~~~l~~~~~~-------------------------V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~ 289 (591)
T 2vgl_B 236 EAQSICERVTPRLSHANSA-------------------------VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLV 289 (591)
T ss_dssp HHHHHHHHHTTCSCSSTTH-------------------------HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCChH-------------------------HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHH
Confidence 4567889999999988888 999999999998752 33444433 235567777
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
.++. +++.++..|+++|+.++...+.... ..+..+. .+.+.+..+|..++++|.+++... ..+ .++
T Consensus 290 ~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~--nv~-----~iv 355 (591)
T 2vgl_B 290 TLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIRLASQA--NIA-----QVL 355 (591)
T ss_dssp HHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSS--THH-----HHH
T ss_pred HHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHHHCChh--hHH-----HHH
Confidence 6664 7889999999999999865433111 1122222 222344899999999999986443 222 245
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
+.|.+++.+ .+++++..++++++.++...+.... ..++.|+.++......++..++.++.++....+..
T Consensus 356 ~~L~~~l~~-----~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~- 424 (591)
T 2vgl_B 356 AELKEYATE-----VDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK- 424 (591)
T ss_dssp HHHHHHTTS-----SCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-
T ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-
Confidence 667777765 3789999999999999987653322 35789999999999999999999999987655543
Q ss_pred HHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 450 ~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
...++..|...+......+.+..++|+++..+...
T Consensus 425 ----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 425 ----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp ----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred ----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 35678888888887666788899999999987655
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.67 E-value=6.6e-14 Score=162.55 Aligned_cols=360 Identities=12% Similarity=0.087 Sum_probs=261.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.++- +.+++++...+..++..+-++...+.+. ..+.+..++++. +++...++.+...+..++..+++...
T Consensus 36 ~~~ir-~~l~~~~~~~k~~~l~kli~~~~~G~d~-------~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~e~~~ 106 (618)
T 1w63_A 36 CAAIR-SSFREEDNTYRCRNVAKLLYMHMLGYPA-------HFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDERQDVHL 106 (618)
T ss_dssp HHHHH-HHHTTTCTTTHHHHHHHHHHHHHTTCCC-------GGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHH-HHhhCCCHHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCCcHHHH
Confidence 44444 6788877777777887777776655432 225666788884 67788899888899999876655333
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
. ++..|.+-|+++++.++..|+++|+++.. ++..+ ..++.+..++.+. +..+|+.|+.++.++++..
T Consensus 107 l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 107 L-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp H-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHC
T ss_pred H-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHC
Confidence 2 67888999999999999999999999983 33322 2467788888876 5589999999999999865
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+ ....+.++.+..++.+.|+. ++..|+++|..+...+++....+ ...+
T Consensus 174 p-----~~v~~~~~~l~~lL~D~d~~-------------------------V~~~Al~~L~~i~~~~~~~~~~~--~~~v 221 (618)
T 1w63_A 174 P-----ELMEMFLPATKNLLNEKNHG-------------------------VLHTSVVLLTEMCERSPDMLAHF--RKLV 221 (618)
T ss_dssp G-----GGGGGGGGGTTTSTTCCCHH-------------------------HHHHHHHHHHHHCCSHHHHHHHH--HTTH
T ss_pred h-----HHHHHHHHHHHHHhCCCCHh-------------------------HHHHHHHHHHHHHHhChHHHHHH--HHHH
Confidence 2 12347788888888888888 89999999999987655432233 2567
Q ss_pred hhHHhhccC---------------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc------CCchhhHHH
Q psy12605 286 PSLIPLLSH---------------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT------HPKEKICKE 344 (845)
Q Consensus 286 ~~Lv~lL~~---------------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~------~~~~~~~~~ 344 (845)
+.++..|.+ +++-.+...+++|+.++..++.... ...+.|..++. +.+..+..+
T Consensus 222 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 222 PQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHH
Confidence 777777642 4788899999999999876554332 23444555542 234678889
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC
Q psy12605 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424 (845)
Q Consensus 345 a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~ 424 (845)
|++++..+.. .+.... .+++.|..++.+. ++.+|..|..++..++...+... ......++.++.
T Consensus 297 a~~~i~~l~~-~~~l~~-----~a~~~L~~~L~~~-----d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~ 360 (618)
T 1w63_A 297 TVLTIMDIKS-ESGLRV-----LAINILGRFLLNN-----DKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLK 360 (618)
T ss_dssp HHHHHHHSCC-CHHHHH-----HHHHHHHHHHTCS-----STTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGG
T ss_pred HHHHHHhcCC-CHHHHH-----HHHHHHHHHHhCC-----CCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHcc
Confidence 9999998743 232211 3467788888763 78999999999999987544321 235567889999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 425 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 425 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+++..|+..|+.+|..++.... ... +++.|..++.. .+.++++.++.+++.+|...
T Consensus 361 d~d~~Ir~~alelL~~l~~~~n-v~~------iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNGNN-IRG------MMKELLYFLDS-CEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCSSS-THH------HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSS
T ss_pred CCChhHHHHHHHHHHHHccccc-HHH------HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987542 111 24566666654 44688999999999998754
No 53
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.60 E-value=5.7e-14 Score=177.67 Aligned_cols=429 Identities=15% Similarity=0.131 Sum_probs=262.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
++.++ ..+.++++.++..|+.++..+.....+. + -..+++.|++.|....++..+..++.++..++...++...
T Consensus 177 l~~l~-~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 250 (1230)
T 1u6g_C 177 LTCLL-PQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 250 (1230)
T ss_dssp HHHHG-GGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT
T ss_pred HHHHH-HHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHH
Confidence 34444 5677888999999999999987654322 1 2346899999986554456788889999988864332111
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCC-------------------
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPD------------------- 185 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~------------------- 185 (845)
..+ ...+|.+++.+.++++++|+.++.+++.++...++ .+..+ ...++.++..+..+
T Consensus 251 ~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 251 EYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp TSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC-------------------
T ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 111 36899999999999999999999999998865332 22221 12345555544311
Q ss_pred -----------------CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 186 -----------------IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 186 -----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
..-.+|+.|+.++..++... +..........+|.+...+.+.++.
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~----------------- 389 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFYKTVSPALISRFKEREEN----------------- 389 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHHTTTHHHHHSTTSCSSSH-----------------
T ss_pred cccchhhcccccccccccCHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHcCCCchH-----------------
Confidence 01246888899999988743 2112334456778887777766666
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCC-------------------hhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHH
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGG-------------------NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGN 309 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~n 309 (845)
++..++.++..+.... ......+ -..+++.+...+.++++.++..++.+++.
T Consensus 390 --------Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~l~~~l~~~~~~vr~~~~~~L~~ 460 (1230)
T 1u6g_C 390 --------VKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ-VPNIVKALHKQMKEKSVKTRQCCFNMLTE 460 (1230)
T ss_dssp --------HHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHH-TTHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHH-hhHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 6666666665443210 0111111 12345556666888899999999999999
Q ss_pred HhcCChhhHHHHhcCCccchhhHhhcCCc--hhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCCh
Q psy12605 310 IVTGTDEQTQVILNCDALSHFPALLTHPK--EKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRP 386 (845)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~ 386 (845)
++........... ..+++.+...|.+.. ..++..++..+..+... .+......+ ..++|.++..+.+. ++
T Consensus 461 l~~~~~~~l~~~l-~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d~-----~~ 533 (1230)
T 1u6g_C 461 LVNVLPGALTQHI-PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGDP-----FY 533 (1230)
T ss_dssp HHHHSTTTTGGGH-HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTCS-----SH
T ss_pred HHHHchhhhHHHH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHccc-----ch
Confidence 8864322111011 146677888887765 48899999988887542 232222222 46889999888763 67
Q ss_pred hHHHHHHHHHHHHhcC--C------hHhHHHHHHcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCh--------HH
Q psy12605 387 NLQFEAAWALTNIASG--T------SAQTQEVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGDGP--------QL 448 (845)
Q Consensus 387 ~v~~~a~~~L~~l~~~--~------~~~~~~l~~~g~i~~Lv~lL--~~~~~~v~~~a~~~L~nl~~~~~--------~~ 448 (845)
.++..+++++..++.. . ...... -...++.++..+ .+.++++|..|+.+++.++.... .+
T Consensus 534 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~ 611 (1230)
T 1u6g_C 534 KITSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT 611 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 8888898899888732 1 011111 123567778888 66788999999999999985321 11
Q ss_pred HHHHHh-------------------------------CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 449 RDYVIN-------------------------------MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI 497 (845)
Q Consensus 449 ~~~l~~-------------------------------~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~ 497 (845)
-..+.+ ..+++.|...+. ..+..++.+++.++..++...........+
T Consensus 612 l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~-~~~~~~r~~a~~al~~l~~~~~~~~~~~~v 690 (1230)
T 1u6g_C 612 LQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR-KNQRALKLGTLSALDILIKNYSDSLTAAMI 690 (1230)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcccccCCHHHH
Confidence 111110 011222223332 234567888899999888866433333444
Q ss_pred HhHHHHHHHhhcCCChhHHHHHH
Q psy12605 498 IELLPALNILIHHHDTSVSIYLW 520 (845)
Q Consensus 498 ~~~l~~l~~ll~~~d~~v~~~~~ 520 (845)
...+..+..++...|.++...++
T Consensus 691 ~~~l~~ll~ll~~~D~~~~~~~~ 713 (1230)
T 1u6g_C 691 DAVLDELPPLISESDMHVSQMAI 713 (1230)
T ss_dssp HHHHTTCGGGSCTTCHHHHHHHH
T ss_pred HHHHHHHHhhcCcchHHHHHHHH
Confidence 44444434445556666655544
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.55 E-value=2.3e-12 Score=149.57 Aligned_cols=387 Identities=14% Similarity=0.163 Sum_probs=271.3
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
....+.+ +++.+++.+.+.-+..++..++..+ +..-. -++..|.+-| .++++.+|..|+++|+++.. ++.
T Consensus 70 ~~~~~vi-k~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~----l~in~l~kDL-~~~n~~vr~lAL~~L~~i~~--~~~ 139 (618)
T 1w63_A 70 FGQLECL-KLIASQKFTDKRIGYLGAMLLLDER--QDVHL----LMTNCIKNDL-NHSTQFVQGLALCTLGCMGS--SEM 139 (618)
T ss_dssp GGHHHHH-HHHHSSSHHHHHHHHHHHHHHCCCC--HHHHH----HHHHHHHHHH-SCSSSHHHHHHHHHHHHHCC--HHH
T ss_pred chHHHHH-HHHcCCchHHHHHHHHHHHHHhCCC--cHHHH----HHHHHHHHhc-CCCCHhHHHHHHHHHHhcCC--HHH
Confidence 3466778 7888999998888888887765533 21111 1477788888 47889999999999999973 443
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
.. ..++.+.++|.++++.+|..|+.+++++...+|+..+ +.++.+..++.+. +..++..|+++|..++.
T Consensus 140 ~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 140 CR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK-NHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp HH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC-CHhHHHHHHHHHHHHHH
Confidence 22 4688999999999999999999999999876665332 4677788888765 55899999999999986
Q ss_pred CCCCCCChhHHhhHHHHHHhhccc---------------CCchhhHHHHHHH---hhhChhhHHhhh-------------
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHH---------------HDTSVSIYLWLSI---IEKNPQISKILV------------- 252 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~---------------~~~~~~~~~~~~l---~~~~~~~~~~~~------------- 252 (845)
.... ........+|.++.++.+ .++..+...++.+ ...+|.....+.
T Consensus 209 ~~~~--~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 209 RSPD--MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286 (618)
T ss_dssp SHHH--HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred hChH--HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 5411 012344667777776653 3666676666543 333443221110
Q ss_pred --hhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh
Q psy12605 253 --SKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF 330 (845)
Q Consensus 253 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L 330 (845)
.+..+...|++++..+... +... ..+++.|..++.++++.++..|+.+|+.++...+. .+. ...+.+
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~--~~~~~i 355 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ--RHRSTI 355 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG--GGHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH--HHHHHH
Confidence 1234667778887776432 2111 13567888889889999999999999999865332 221 255678
Q ss_pred hHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHH
Q psy12605 331 PALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 331 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 410 (845)
+.++++++..+|..|+.+|..++.... .+. +++.|...+.+ .+.+++..+..+++.++...+.....
T Consensus 356 ~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~-----~d~e~r~~~v~~I~~la~k~~~~~~~- 422 (618)
T 1w63_A 356 VDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDS-----CEPEFKADCASGIFLAAEKYAPSKRW- 422 (618)
T ss_dssp HHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHSSCCCHHH-
T ss_pred HHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence 889999999999999999999966432 122 35677777776 47899999999999998743222111
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC-CCChhHHHHHHHHHHHhhc
Q psy12605 411 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP-DIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 411 ~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~~~~~~~~~~l~nL~~ 486 (845)
.++.|++++......++..++.++..+....++.+... +..|..++.. .....+.+.++|+++..+.
T Consensus 423 ----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~-----v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 423 ----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYT-----VQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp ----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHH-----HHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 26788888887777777777778888877666655443 4567777764 2345667789999998875
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.53 E-value=7.9e-13 Score=137.93 Aligned_cols=258 Identities=17% Similarity=0.141 Sum_probs=199.9
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
..+.++.|++.|+ ++++.+|..|+++|..+.. + ++++.|+++|.++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~-~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLD-DHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHH-cCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4568999999994 6789999999999999962 2 37899999999999999999999999997543322
Q ss_pred HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhCh
Q psy12605 166 RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNP 245 (845)
Q Consensus 166 r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~ 245 (845)
.. .++.+...+.++.+..++..++++|.++..... ......++.|..++.++++.
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~-------------- 143 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTN-------------- 143 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHH--------------
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHH--------------
Confidence 11 233344322233366899999999999985431 12456889999999998888
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~ 325 (845)
++..++++|..+.. .+.++.|+.++.++++.++..|+.+|+.+....+ .
T Consensus 144 -----------vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~ 192 (280)
T 1oyz_A 144 -----------VRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------D 192 (280)
T ss_dssp -----------HHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------H
T ss_pred -----------HHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------H
Confidence 89999999987643 3578999999999999999999999999843322 3
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
+++.|..++.++++.+|..|+++|+++. ....++.|+..+.+ ++++..++++|+.+..
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d-------~~vr~~a~~aL~~i~~---- 250 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKK-------NTVYDDIIEAAGELGD---- 250 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTS-------SSCCHHHHHHHHHHCC----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcC-------ccHHHHHHHHHHhcCc----
Confidence 5678999999999999999999999984 23578889998865 2488999999998853
Q ss_pred hHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGN 440 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~n 440 (845)
...++.|..++.+ .+++++..++.+|.+
T Consensus 251 -------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 251 -------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 2468889999965 567788777777643
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.51 E-value=2.2e-13 Score=153.21 Aligned_cols=414 Identities=14% Similarity=0.132 Sum_probs=271.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+.+++ ..+.++|...+..|...|..+...+ ..+.++.|++++..+ .++.+|..|+..|.++.......
T Consensus 2 ~l~~~L-~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 2 ELITIL-EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp CHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred cHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchH
Confidence 355677 7788999999999999998854311 123577888888544 36789999999999987542111
Q ss_pred HH-----------HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCC-CHHH
Q psy12605 124 TQ-----------EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDI-PISF 190 (845)
Q Consensus 124 ~~-----------~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~ 190 (845)
.. .-.....-..|+..|.++++.+ ..++.+++.++... +.. .-.+.++.++..+.++. +..+
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~ 146 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHM 146 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHH
Confidence 00 0011123456788888888888 99999999998542 110 01246788888887763 4578
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
+..++.+|..+++...+.........+++.+...+.++ ++. ++..|++++..+
T Consensus 147 r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~-------------------------vr~~a~~~l~~~ 201 (462)
T 1ibr_B 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN-------------------------VKLAATNALLNS 201 (462)
T ss_dssp HHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHH-------------------------HHHHHHHHHHHH
Confidence 99999999999985422222233456888888888876 555 788888888876
Q ss_pred hcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHH
Q psy12605 269 TDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVW 347 (845)
Q Consensus 269 ~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~ 347 (845)
...-.+... .....-+++.+...+.++++.++..++++|..++..........+..++++.++..+.+.++.++..++.
T Consensus 202 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~ 281 (462)
T 1ibr_B 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281 (462)
T ss_dssp TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 543221110 0001113556666778888999999999999998654332111122156677777778889999999999
Q ss_pred HHHHhhcCChHHH-----------------HHHHh---cCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 348 FLSNITAGNQAQV-----------------QAVID---AGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 348 ~L~nl~~~~~~~~-----------------~~l~~---~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
++..++....... ..+++ ..++|.+++.+...+. .++++.++..|+.+|..++...++
T Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence 9988864321100 00111 2356667777754311 113568999999999999864432
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-Q-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
. +. ...++.+...+.+++..+|..|+.+|+.++.... . ....+ ..+++.++..+.+.. ..++..++|++++
T Consensus 362 ~---~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 362 D---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS-VVVRDTAAWTVGR 434 (462)
T ss_dssp T---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred H---HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 1 11 2456778888999999999999999999997432 1 11111 457788888887544 6889999999999
Q ss_pred hhcCCCCCC-ChhHHHhHHHHHH
Q psy12605 484 LCRNKDPPP-SMSTIIELLPALN 505 (845)
Q Consensus 484 L~~~~~~~~-~~~~~~~~l~~l~ 505 (845)
++....+.. ....+...++.+.
T Consensus 435 ~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 435 ICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHhcccccccHHHHHHHHHHHH
Confidence 998653211 1234444555444
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.51 E-value=1.4e-12 Score=136.01 Aligned_cols=257 Identities=13% Similarity=0.058 Sum_probs=198.7
Q ss_pred HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 128 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
.+.+.++.|++.|.++++.++..|+++|+++.. + +.++.|+.++.++ +..++..|+++|..+.....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKK- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTT-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccc-
Confidence 345789999999999999999999999999972 2 2478888889876 55899999999999864321
Q ss_pred CCChhHHhhHHHHHHh-hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchh
Q psy12605 208 PPSMSTIIELLPALNI-LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286 (845)
Q Consensus 208 ~~~~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 286 (845)
.....++.|.. ++.++++. ++..++++|..+....... ...+++
T Consensus 87 -----~~~~l~~~L~~~~~~d~~~~-------------------------vr~~a~~aL~~l~~~~~~~-----~~~~~~ 131 (280)
T 1oyz_A 87 -----CEDNVFNILNNMALNDKSAC-------------------------VRATAIESTAQRCKKNPIY-----SPKIVE 131 (280)
T ss_dssp -----THHHHHHHHHHHHHHCSCHH-------------------------HHHHHHHHHHHHHHHCGGG-----HHHHHH
T ss_pred -----cchHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHhccCCcc-----cHHHHH
Confidence 12345556653 45667777 8999999999886433221 224578
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
.|+.++.++++.++..|+.+|+++.. ..+++.|+.++.++++.+|..|+++|+.+....+
T Consensus 132 ~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------- 191 (280)
T 1oyz_A 132 QSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------- 191 (280)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------
T ss_pred HHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------
Confidence 89999999999999999999998742 2478999999999999999999999999854333
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
..++.|+..+.+ .++.++..|+++|+.+.. ...++.|+.++.+++ ++..++++|+.+...
T Consensus 192 ~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-- 251 (280)
T 1oyz_A 192 DIRDCFVEMLQD-----KNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK-- 251 (280)
T ss_dssp HHHHHHHHHTTC-----SCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--
T ss_pred HHHHHHHHHhcC-----CCHHHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--
Confidence 246788888876 479999999999999862 357889999998754 899999999998642
Q ss_pred HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHH
Q psy12605 447 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 481 (845)
Q Consensus 447 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l 481 (845)
..++.|..++.+..+.++...+...+
T Consensus 252 ---------~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 252 ---------TLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---------GGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---------hhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 45788888887766666666665554
No 58
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.42 E-value=4.5e-10 Score=129.80 Aligned_cols=362 Identities=11% Similarity=0.076 Sum_probs=244.4
Q ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh
Q psy12605 46 LDMLVVEAARK---DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA 122 (845)
Q Consensus 46 i~~lv~~~l~~---~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~ 122 (845)
+.++- +.+++ .++..+..++..+-++...+.+. +.+.+..++++ .+++...|+.+.-.+..++..+++
T Consensus 37 ~~~ir-~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~-~s~~~~~Krl~YL~l~~~~~~~~e 107 (621)
T 2vgl_A 37 LANIR-SKFKGDKALDGYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLL-SSNRYTEKQIGYLFISVLVNSNSE 107 (621)
T ss_dssp HHHHH-HHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGG-GCSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHh-cCCCHHHHHHHHHHHHHHccCCcH
Confidence 44443 66664 36777778887777776555432 24677888998 577889999999999999987665
Q ss_pred hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhh--cCCCCHHHHHHHHHHHHH
Q psy12605 123 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI--KPDIPISFLRNVTWVIVN 200 (845)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll--~~~~~~~~~~~a~~~L~~ 200 (845)
.... ++..+.+-|+++++.++-.|+++|+++.. ++..+. .++.+.+++ .+. +..+|..|+.++..
T Consensus 108 ~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~~-----l~~~v~~~l~~~d~-~~~VRK~A~~al~k 174 (621)
T 2vgl_A 108 LIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAEA-----FAGEIPKILVAGDT-MDSVKQSAALCLLR 174 (621)
T ss_dssp HHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHHH-----HTTHHHHHHHCSSS-CHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHHH-----HHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Confidence 5433 56788888999999999999999999963 443333 467888888 554 56899999999999
Q ss_pred hhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy12605 201 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVI 280 (845)
Q Consensus 201 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 280 (845)
+.+..+.... ..+.++.+..++.+.|+. ++..|+.++..++..+++...
T Consensus 175 l~~~~p~~~~---~~~~~~~l~~lL~d~d~~-------------------------V~~~a~~~l~~i~~~~~~~~~--- 223 (621)
T 2vgl_A 175 LYRTSPDLVP---MGDWTSRVVHLLNDQHLG-------------------------VVTAATSLITTLAQKNPEEFK--- 223 (621)
T ss_dssp HHHHCGGGCC---CCSCHHHHHHHTTCSCHH-------------------------HHHHHHHHHHHHHHHCHHHHT---
T ss_pred HHHhChhhcC---chhHHHHHHHHhCCCCcc-------------------------HHHHHHHHHHHHHHhChHHHH---
Confidence 9985421111 137889999999888887 888899888888765543211
Q ss_pred hcCchhhHHh----hccC-------------CchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhc-------
Q psy12605 281 DSGVVPSLIP----LLSH-------------KEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLT------- 335 (845)
Q Consensus 281 ~~g~i~~Lv~----lL~~-------------~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~------- 335 (845)
..++.++. ++.. +++-.+...++.|+.++..+ +.....+.+ .+..++..+.
T Consensus 224 --~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 224 --TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK 299 (621)
T ss_dssp --THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred --HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence 23333333 3321 15778999999999887543 344443332 3333333221
Q ss_pred --CCc--hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHH
Q psy12605 336 --HPK--EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVV 411 (845)
Q Consensus 336 --~~~--~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 411 (845)
+.+ ..+..+|..++..+. ..++... .++..|..++.+ .++++|..+..++..++...+.. . ++
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~-----~~~niry~aL~~l~~l~~~~~~~-~-~~ 366 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQH-----RETNLRYLALESMCTLASSEFSH-E-AV 366 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSC-----SCHHHHHHHHHHHHHHTTCTTTH-H-HH
T ss_pred ccccchHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcC-----CCcchHHHHHHHHHHHHhccCcH-H-HH
Confidence 112 367778888888874 3333322 245677788765 47899999999999998765421 1 12
Q ss_pred HcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 412 AAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 412 ~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
......++..+. +++..|+..++..|..++..+ +. +. ++..|..++... +.++++.++..++.++.
T Consensus 367 -~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-Nv-~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 367 -KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS-NA-QQ-----IVAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp -HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-HH-HH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-hH-HH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 345677888888 899999999999999998532 22 22 344555666543 45677777777777664
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.34 E-value=6.8e-12 Score=141.00 Aligned_cols=355 Identities=14% Similarity=0.138 Sum_probs=231.6
Q ss_pred HHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCcc----------HHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHH
Q psy12605 48 MLVVEAARKD--NPELQLLAVQSARKLLSSDKNPP----------IEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115 (845)
Q Consensus 48 ~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~----------~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~ 115 (845)
.++ ..+.+. ++.+|..|+..|++++....... ...-....+-..|++.|. +.++.+ ..++.++..
T Consensus 39 ~L~-~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ 115 (462)
T 1ibr_B 39 ELS-RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAG 115 (462)
T ss_dssp HHH-HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHH
T ss_pred HHH-HHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHH
Confidence 344 455553 68899999999999876431000 000012234566788884 556678 889999999
Q ss_pred HhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCC-CHHHH
Q psy12605 116 IASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDI-PISFL 191 (845)
Q Consensus 116 la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~ 191 (845)
++....... .-.+.+|.|+..+.++ ++.+++.|+.+|+.++.+. ++.-.... ...++.++..+.++. +..+|
T Consensus 116 ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr 191 (462)
T 1ibr_B 116 IACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVK 191 (462)
T ss_dssp HHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHH
Confidence 986421100 0146889999999988 8999999999999998643 21111111 125677888887764 56899
Q ss_pred HHHHHHHHHhhcCCCCC-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 192 RNVTWVIVNLCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
..|++++.++...-... .........++.+...+.+.+++ ++..+++++..+..
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-------------------------vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR-------------------------VRVAALQNLVKIMS 246 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH-------------------------HHHHHHHHHHHHHH
Confidence 99999999976432100 01111123466676667666776 88899999998876
Q ss_pred CChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhH-----------------HHHhc---CCccchh
Q psy12605 271 GGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT-----------------QVILN---CDALSHF 330 (845)
Q Consensus 271 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~-----------------~~i~~---~~~l~~L 330 (845)
...+........++++.++..+.+.++.++..|+.++.+++....... ..+.+ ..++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 554432222222667777777788889999999999999875320000 00000 1345666
Q ss_pred hHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 331 PALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 331 ~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
+..+... +..+|..|+.+|..++....+ .+. ..+++.+...+.+ .++.+|..|+.+++.++.+.
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~-----~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKN-----PDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcC-----CChHHHHHHHHHHHHHhcCC
Confidence 6666432 347899999999998654332 111 2345556666654 48999999999999999765
Q ss_pred h-HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 404 S-AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 404 ~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
. +..... -...++.++..+.++++.||..|+|+|++++..
T Consensus 398 ~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 398 EPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp CTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3 211111 145788999999999999999999999999863
No 60
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=1.3e-08 Score=117.72 Aligned_cols=387 Identities=12% Similarity=0.136 Sum_probs=262.7
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
....+.+ +++.+++...+.-+..++..+...+ + +.++- ++..+.+=| .++++.+|..|+.+|+++.. ++.
T Consensus 74 ~~~~~vv-kl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl-~~~n~~ir~lALr~L~~i~~--~e~ 143 (621)
T 2vgl_A 74 FGHMEAV-NLLSSNRYTEKQIGYLFISVLVNSN--S--ELIRL--INNAIKNDL-ASRNPTFMGLALHCIANVGS--REM 143 (621)
T ss_dssp SCHHHHH-HGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHH-HSCCHHHHHHHHHHHHHHCC--HHH
T ss_pred hhHHHHH-HHhcCCCHHHHHHHHHHHHHHccCC--c--HHHHH--HHHHHHHhc-CCCCHHHHHHHHHHhhccCC--HHH
Confidence 3467888 7899999998888888887765433 1 21111 356666677 36889999999999999963 553
Q ss_pred HHHHHHcCChHHHHHhh--CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 124 TQEVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
.. ..+|.+.++| .+.++.+|..|+.++.++...+|+.. ...+.++.+.++|.+. +..++.+|+.++..+
T Consensus 144 ~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 144 AE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQ-HLGVVTAATSLITTL 214 (621)
T ss_dssp HH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCC-CccHHHHHHHHHHHH
Confidence 33 3678999999 88999999999999999987665432 2247889999999755 558999999999999
Q ss_pred hcCCCCCCChhHHhhHHHHHH----hhcccC-------------CchhhHHHHHHHhhh----ChhhHHhh-------h-
Q psy12605 202 CRNKDPPPSMSTIIELLPALN----ILIHHH-------------DTSVSIYLWLSIIEK----NPQISKIL-------V- 252 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~----~ll~~~-------------~~~~~~~~~~~l~~~----~~~~~~~~-------~- 252 (845)
+.... ......+|.++ +++... ++..++..++.+... +|.....+ .
T Consensus 215 ~~~~~-----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~ 289 (621)
T 2vgl_A 215 AQKNP-----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILN 289 (621)
T ss_dssp HHHCH-----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHhCh-----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 97552 11223444444 333221 566777777554332 23322211 0
Q ss_pred -------------hh--HHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 253 -------------SK--MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 253 -------------~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
.+ ..+...++.++.++.. ..+..+ .++..|..+|.++++.++..|+.+|..++...+.
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~- 362 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS- 362 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-
Confidence 01 1455666677766652 222222 3467788899888999999999999999876532
Q ss_pred HHHHhcCCccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHH
Q psy12605 318 TQVILNCDALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396 (845)
Q Consensus 318 ~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L 396 (845)
...+. ...+.++.++. ++|..+|..++.+|..++. +...+. ++..|...+... +.+.+..+..++
T Consensus 363 ~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-----d~~~~~~~v~~I 428 (621)
T 2vgl_A 363 HEAVK--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-----DYSIREEIVLKV 428 (621)
T ss_dssp HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-----CHHHHHHHHHHH
Confidence 12222 34567888888 8999999999999999853 333333 455677777763 789999999999
Q ss_pred HHHhcCC-hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC-ChhHH
Q psy12605 397 TNIASGT-SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFL 474 (845)
Q Consensus 397 ~~l~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~ 474 (845)
+.++... +.. .-.+..|++++......+...+...+..+....++.+... +..|+..+.... ...+.
T Consensus 429 ~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~-----~~~l~~~l~~~~~~~~li 497 (621)
T 2vgl_A 429 AILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYA-----AKTVFEALQAPACHENLV 497 (621)
T ss_dssp HHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHH-----HHHHHHHHTSSSCCHHHH
T ss_pred HHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHH-----HHHHHHHHcCccchHHHH
Confidence 9887421 111 1246677888876666666667777777776666666553 456677776443 35777
Q ss_pred HHHHHHHHHhhc
Q psy12605 475 RNVTWVIVNLCR 486 (845)
Q Consensus 475 ~~~~~~l~nL~~ 486 (845)
+.++|+++..+.
T Consensus 498 ~~~~wilGEy~~ 509 (621)
T 2vgl_A 498 KVGGYILGEFGN 509 (621)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHhcchHH
Confidence 888999998865
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=3.4e-10 Score=112.34 Aligned_cols=188 Identities=21% Similarity=0.197 Sum_probs=155.2
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+.++.|+++|+ ++++.+|..|+..|..+.. .++++.|+++|.++++.++..|+++|+.+...
T Consensus 18 ~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----- 80 (211)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----
T ss_pred HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence 456999999995 7889999999999999864 25899999999999999999999999999632
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
+.++.|+.++.++ +..++..++++|..+.. ...++.|..++.++++.
T Consensus 81 ------~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~--------------- 127 (211)
T 3ltm_A 81 ------RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWF--------------- 127 (211)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHH---------------
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHH---------------
Confidence 3578888888776 55899999999998853 35788999999988888
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++..++++|..+.. ...++.|..++.++++.++..|+.+|+.+.. ..+
T Consensus 128 ----------vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~ 175 (211)
T 3ltm_A 128 ----------VRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERV 175 (211)
T ss_dssp ----------HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHH
T ss_pred ----------HHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhH
Confidence 89999999988742 3467889999999999999999999999832 135
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCC
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
++.|..++.++++.+|..|..+|.++....
T Consensus 176 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 176 RAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 678889999999999999999999985543
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=5.8e-10 Score=109.67 Aligned_cols=184 Identities=21% Similarity=0.212 Sum_probs=155.1
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+..+.++++| .++++.+|..|+++|..+.. .+.++.|+++|.++++.++..|+++|+.+...
T Consensus 13 ~~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----- 75 (201)
T 3ltj_A 13 PEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----- 75 (201)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred CcchHHHHHHh-cCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence 34688999999 57889999999999999864 24789999999999999999999999998632
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..++.|+.++.++ +..++..|+++|.++.. ...++.|..++.++++.
T Consensus 76 ------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~--------------- 122 (201)
T 3ltj_A 76 ------RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWF--------------- 122 (201)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHH---------------
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHH---------------
Confidence 3578888888876 56899999999998753 24788899999888888
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++..++++|..+.. ...++.|..++.++++.++..|+.+|+.+. .+ .+
T Consensus 123 ----------vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~ 170 (201)
T 3ltj_A 123 ----------VRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RV 170 (201)
T ss_dssp ----------HHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HH
T ss_pred ----------HHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hH
Confidence 89999999987742 356788999999999999999999999982 11 35
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
++.|..++.++++.+|..|..+|.++
T Consensus 171 ~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 171 RAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 67888899889999999999999987
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.16 E-value=8.7e-10 Score=109.35 Aligned_cols=187 Identities=16% Similarity=0.138 Sum_probs=152.7
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..++.++ +.+.++++.++..|+..|..+.. .+.++.|+++|+ ++++.+|..|+++|..+..
T Consensus 19 ~~~~~L~-~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 19 EKVEMYI-KNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGHHHHH-HHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHHH-HHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-----
Confidence 4577888 89999999999999999987632 236899999995 6789999999999999863
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
.+.++.|+++|.++++.++..|+++|+.+... +.++.|+.++.++ +..++..|+++|.++..
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDE-DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC
Confidence 24789999999999999999999999999632 3578888888766 56899999999999842
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
...++.|..++.++++. ++..++++|..+.. ..
T Consensus 142 -----------~~~~~~L~~~l~d~~~~-------------------------vr~~a~~aL~~~~~-----------~~ 174 (211)
T 3ltm_A 142 -----------ERAVEPLIKALKDEDGW-------------------------VRQSAADALGEIGG-----------ER 174 (211)
T ss_dssp -----------GGGHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHCS-----------HH
T ss_pred -----------HHHHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHhCc-----------hh
Confidence 25788999999888888 89999999988742 24
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCC
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 314 (845)
.++.|..++.++++.++..|..+|+++....
T Consensus 175 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 175 VRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 5677888888899999999999999987543
No 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.15 E-value=1.2e-09 Score=107.43 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=153.0
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
...+.++ +.|.++++.++..|+..|..+.. .+.++.|+++| .++++.+|..|+++|..+...
T Consensus 14 ~~~~~~i-~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~---- 75 (201)
T 3ltj_A 14 EKVEMYI-KNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGDE---- 75 (201)
T ss_dssp HHHHHHH-HHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----
T ss_pred cchHHHH-HHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCH----
Confidence 4567788 89999999999999999987632 13589999999 477899999999999998532
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
++++.|+.+|.++++.++..|+++|+.+... ..++.|+.++.++ +..++..|+++|..+..
T Consensus 76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDE-DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999998632 2578888888766 56899999999999852
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
...++.|..++.++++. ++..++++|..+.. ..
T Consensus 137 -----------~~~~~~L~~~l~d~~~~-------------------------vr~~A~~aL~~~~~-----------~~ 169 (201)
T 3ltj_A 137 -----------ERAVEPLIKALKDEDGW-------------------------VRQSAADALGEIGG-----------ER 169 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHCS-----------HH
T ss_pred -----------HHHHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHhCc-----------hh
Confidence 35788999999988888 89999999988732 23
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHh
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIV 311 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~ 311 (845)
.++.|..++.++++.++..|..+|+.+-
T Consensus 170 ~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 170 VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999873
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=1e-08 Score=120.05 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=156.5
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH-HhhCCCChhHHHHHHHHHHHhcCC-Chh
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL-RLLMSPHSNVCEQAVWALGNIIGD-GPQ 164 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~-~lL~s~~~~v~~~a~~~L~nla~~-~~~ 164 (845)
..+.| +++.| .+.++..|..|+++|++|+. +++.++.+...|+|..++ .+|.+++.++++.|+++|+||+.+ .++
T Consensus 34 ~~i~P-ll~~L-~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILP-VLKDL-KSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHH-HHHHH-SSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHH-HHHHc-CCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 34555 56778 46788999999999999996 588888888889988765 578899999999999999999965 478
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhC
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKN 244 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~ 244 (845)
.+..++..|++++|..+++.. ...+........ .........+
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~--~~~~~~~~~~-------------------------- 153 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFS--KLLKAQQRLV-------------------------- 153 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGG--GSCHHHHHHH--------------------------
T ss_pred HHHHHHHcChHHHHHHHHHhh---------HHHHhhhccccc--cccHHHHHHH--------------------------
Confidence 889999999999999887532 111111110000 0000000000
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC---CchhhHHHHHHHHHHHhcCChhhHHHH
Q psy12605 245 PQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH---KEVKVQTASLRAVGNIVTGTDEQTQVI 321 (845)
Q Consensus 245 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~i 321 (845)
..+...++.+|.+|+..+.+....+...+.++.++.+|.+ ...+++..|+.+|.+++.+++...+.+
T Consensus 154 ----------~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i 223 (684)
T 4gmo_A 154 ----------WDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAI 223 (684)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 0144566777888888888877788888999999999843 346799999999999999999888888
Q ss_pred hcCCccchhhHhh--cCCchhhHHHHHHHHHHhh
Q psy12605 322 LNCDALSHFPALL--THPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 322 ~~~~~l~~L~~lL--~~~~~~~~~~a~~~L~nl~ 353 (845)
.+.+....+..++ ...+...+..++++|.|+.
T Consensus 224 ~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 224 TDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 8876554433333 2334456788899999974
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.82 E-value=1.6e-08 Score=118.45 Aligned_cols=200 Identities=13% Similarity=0.070 Sum_probs=156.3
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh-hHhhcCCchhhHHHHHHHHHHhhcC-ChHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF-PALLTHPKEKICKEAVWFLSNITAG-NQAQVQ 361 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L-~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~ 361 (845)
-+.++++.|+++++..|..|+.+|++++. ++..++.+...+++..+ ..+|.+.+.++|.+|+++|+||+.. .++.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 35567788999999999999999999996 46667778888887765 5678999999999999999999875 478888
Q ss_pred HHHhcCChHHHHHHhhhcccc---------cCC-------hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 362 AVIDAGLLPKIIANLQKVGRI---------VLR-------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~---------~~~-------~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
.+++.|+++.|..++...... ... +.+...++.+|.+++.++.+....+...++++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 899999999999998653110 001 1244567889999999888888889999999999998853
Q ss_pred ---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc---CCCCChhHHHHHHHHHHHhhc
Q psy12605 426 ---PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI---KPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 426 ---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll---~~~~~~~~~~~~~~~l~nL~~ 486 (845)
...+++..|+.+|..++.+++...+.+.+.|....+..++ +... ..+..+++.+.|+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVFT 258 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHhh
Confidence 3468999999999999999999999998887654333332 2322 345677888888754
No 67
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.70 E-value=2.9e-05 Score=95.07 Aligned_cols=428 Identities=13% Similarity=0.055 Sum_probs=224.5
Q ss_pred HHHHHHHcC--CChHHHHHHHHHHHHHHcCCCC---------ccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHH
Q psy12605 48 MLVVEAARK--DNPELQLLAVQSARKLLSSDKN---------PPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116 (845)
Q Consensus 48 ~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~---------~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l 116 (845)
.++ ..+.+ .+..+|..|+..|++.+...-. +.....+. ..|++.+..+ .+.+|..++.+++.+
T Consensus 39 ~L~-~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik----~~ll~~l~~~-~~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 39 TLL-HVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK----KEIVPLMISL-PNNLQVQIGEAISSI 112 (960)
T ss_dssp HHH-HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH----HHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHH-HHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH----HHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 344 45533 3678899999999998763210 11122223 3345555333 478999999999999
Q ss_pred hcCC-hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC------hhhHHHHH--hcCChhhHHhh------
Q psy12605 117 ASGT-SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG------PQLRDYVI--NMGVVPPLLSF------ 181 (845)
Q Consensus 117 a~~~-~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~------~~~r~~i~--~~g~i~~Lv~l------ 181 (845)
+..+ ++.- .+.++.|++++++++...+..++.+|..++... ++.+..+. -....+.++.+
T Consensus 113 a~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~ 187 (960)
T 1wa5_C 113 ADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDE 187 (960)
T ss_dssp HHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8631 1100 357889999999988899999999999998632 22222221 01123333332
Q ss_pred -hcCCCC--------HHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhh
Q psy12605 182 -IKPDIP--------ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252 (845)
Q Consensus 182 -l~~~~~--------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (845)
++.+.. ..+...++.++..+....-+..........++.+.+++....+.. ..+|.. ....
T Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~---------~~d~d~-~~~~ 257 (960)
T 1wa5_C 188 QITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL---------EDPDET-EHAS 257 (960)
T ss_dssp HTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC---------C-------CCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc---------cCCccc-cccc
Confidence 443321 133344666666665433221111122445566565554321100 000000 0000
Q ss_pred hhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-----CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 253 SKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-----HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 253 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
...+++..++.++..+.....+...... ..+++..+..+. ...+.++..++..+..++... ..+..+.....+
T Consensus 258 ~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l 335 (960)
T 1wa5_C 258 VLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAM 335 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHH
Confidence 0012666777777776654443332221 234455555553 345678999999999987542 211111111223
Q ss_pred chhh-----Hhhc-----------------------CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhc
Q psy12605 328 SHFP-----ALLT-----------------------HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379 (845)
Q Consensus 328 ~~L~-----~lL~-----------------------~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~ 379 (845)
+.++ ..+. +.....|..|..+|..++....+.. . ..+++.+-+.+...
T Consensus 336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~-~~~l~~i~~~l~~~ 411 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---T-NIFLAHMKGFVDQY 411 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---H-HHHHHHHHHHHHHh
Confidence 3233 2221 0012466777778877765544221 1 11223333333311
Q ss_pred cc-ccCChhHHHHHHHHHHHHhcCCh--H----------hHHHHHHcCChHHHHHhhCCC---CHHHHHHHHHHHHHhhc
Q psy12605 380 GR-IVLRPNLQFEAAWALTNIASGTS--A----------QTQEVVAAGAVPLFLRLLMSP---HSNVCEQAVWALGNIIG 443 (845)
Q Consensus 380 ~~-~~~~~~v~~~a~~~L~~l~~~~~--~----------~~~~l~~~g~i~~Lv~lL~~~---~~~v~~~a~~~L~nl~~ 443 (845)
.. ...++..+..|..+++.++.+.. . ....+. ...++..+.++ ++-+|..|+|+++.++.
T Consensus 412 ~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~ 487 (960)
T 1wa5_C 412 MSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRN 487 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHh
Confidence 00 01467888999999999975321 0 111111 11233344556 88999999999999987
Q ss_pred CChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC------CC----CChhHHHhHHHHHHHhhcCC
Q psy12605 444 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD------PP----PSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 444 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~------~~----~~~~~~~~~l~~l~~ll~~~ 511 (845)
.-. .+. -..+++.++..+.+. +..++..+++++.+++.... +. .-...+..+++.|..++...
T Consensus 488 ~~~--~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 488 QLT--KAQ--LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (960)
T ss_dssp GSC--HHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred hCC--HHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc
Confidence 521 111 123466777777643 46788999999999997532 01 11234455666666776654
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.55 E-value=9.8e-06 Score=94.57 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=188.8
Q ss_pred CHHHHHHhhcc--CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCC--------hhHHHHHHHHHHHh
Q psy12605 89 ILPVLVECLER--SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH--------SNVCEQAVWALGNI 158 (845)
Q Consensus 89 ~i~~Lv~lL~~--~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~--------~~v~~~a~~~L~nl 158 (845)
++..|-++|.. ++++.++..|+..|+-+..+..+ .++..|...|.+++ +.++..|+..||.+
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 46667777732 46778999999999999877432 14677778787655 67888999999998
Q ss_pred cCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHH
Q psy12605 159 IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLW 237 (845)
Q Consensus 159 a~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~ 237 (845)
...+. ++. +++.|..++..+.. ..+..|+.+|.-+.-+..+ ..++..|++.+.+ .+..
T Consensus 465 ~~GS~--~ee-----v~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~------ 523 (963)
T 4ady_A 465 AMGSA--NIE-----VYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGN------ 523 (963)
T ss_dssp STTCC--CHH-----HHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHH------
T ss_pred hcCCC--CHH-----HHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHH------
Confidence 64432 111 25566777765533 4566777777766444421 2344455444433 3333
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-CCchhhHHHHHHHHHHHhcCChh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++..++.+|+.+.-+..+ .++.+++.|. +.++.++..++-+++--..+...
T Consensus 524 -------------------vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 524 -------------------ITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp -------------------HHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred -------------------HHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 777788888877655443 3455666664 56788888888888765554333
Q ss_pred hHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
. ..++.|+..+ ++.++.+|..|+..|+.+..+++ ..++.++..+... .++.+|..++++
T Consensus 576 ~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~----~d~~VR~gAalA 635 (963)
T 4ady_A 576 N-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKS----HNAHVRCGTAFA 635 (963)
T ss_dssp H-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGC----SCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 2 1344445444 56778899999999999876654 3567777777665 489999999999
Q ss_pred HHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 396 L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
|+.++.+++.. .++..|..+..+.+..|+..|+.+|+.+.....
T Consensus 636 LGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 636 LGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 99998876531 246788889999999999999999999987543
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.55 E-value=1.1e-06 Score=92.20 Aligned_cols=312 Identities=10% Similarity=0.084 Sum_probs=178.6
Q ss_pred HHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 52 EAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 52 ~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
+.++++ |+.....++..+-++...+.+ ....-...+.+..++++ .+++..+|+..-..+..++...++. +.
T Consensus 32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~--f~~~e~t~lf~~v~kl~-~s~d~~lKrLvYLyl~~~~~~~~e~---iL- 104 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKILYLINQGEH--LGTTEATEAFFAMTKLF-QSNDPTLRRMCYLTIKEMSCIAEDV---II- 104 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHGGG-GCCCHHHHHHHHHHHHHHTTTSSCG---GG-
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHCCCC--CchhHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCHHHH---HH-
Confidence 345544 666666677777777776643 22222234577888999 5788899999988898888653332 22
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
++..|.+=++++++-+|-.|+++|++|... +.-+. ..+.+.+.+.+. +..++..|+.+...++...+
T Consensus 105 --v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~p--- 171 (355)
T 3tjz_B 105 --VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IERYMKQAIVDK-VPSVSSSALVSSLHLLKCSF--- 171 (355)
T ss_dssp --GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCH---
T ss_pred --HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCH---
Confidence 688899999999999999999999999843 33332 245667777776 45899999999999987552
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
....+.++.+-.++.+.++- ++..|+.+|..+..++.. .+..++
T Consensus 172 --e~v~~~~~~l~~ll~d~n~~-------------------------V~~~Al~lL~ei~~~d~~---------a~~kLv 215 (355)
T 3tjz_B 172 --DVVKRWVNEAQEAASSDNIM-------------------------VQYHALGLLYHVRKNDRL---------AVSKMI 215 (355)
T ss_dssp --HHHHTTHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHHTTCHH---------HHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCCcc-------------------------HHHHHHHHHHHHHhhchH---------HHHHHH
Confidence 23567888888888888877 788888888888765432 223344
Q ss_pred hhccC---CchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 290 PLLSH---KEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 290 ~lL~~---~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
..+.. .++-.+...+++++.+..++ +.. ....++.+..+|++.++.+..+|+.++..+...... . -
T Consensus 216 ~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~-~ 285 (355)
T 3tjz_B 216 SKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----E-L 285 (355)
T ss_dssp HHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----H-H
Confidence 44432 24556666677776665544 222 224667788888999999999999999998442211 1 1
Q ss_pred cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
..++..|..++.+ .++.+|..|...|..++...++... ..-.-+.+++.+++..+...|+.+|-
T Consensus 286 ~~a~~~L~~fLss-----~d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 286 APAVSVLQLFCSS-----PKAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp --CCCTHHHHHHS-----SSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 2345566666665 3789999999999999887665432 23455778888888888777776664
No 70
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.50 E-value=0.00026 Score=86.83 Aligned_cols=222 Identities=14% Similarity=0.066 Sum_probs=126.8
Q ss_pred HHHHHHHH-HcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----
Q psy12605 46 LDMLVVEA-ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG----- 119 (845)
Q Consensus 46 i~~lv~~~-l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~----- 119 (845)
+..++ .. ..++|++.+.+|-..|..+-... +..+.+..+|..+.++.+|..|+.+|.+....
T Consensus 26 l~~~l-~~l~~~~~~~~r~~A~~~L~~~~~~p-----------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 26 VEKAL-HQLYYDPNIENKNLAQKWLMQAQVSP-----------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHH-HHHHHCCCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHH-HHHhcCCCHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 44555 34 45688999999999988764432 24667788886667889999999999987642
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCC----CCHHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPD----IPISFLRNV 194 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~----~~~~~~~~a 194 (845)
+++.+..+. ...++.+... .++.+.++.+.+.++..|+... ++. =.+.++.++..++.. .+...+..+
T Consensus 94 ~~~~~~~ir-~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~-----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~ 166 (963)
T 2x19_B 94 PTDQYESLK-AQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDA-----WPCAVADMVRLFQAEDSPVDGQGRCLAL 166 (963)
T ss_dssp CGGGHHHHH-HHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHCC------CHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccc-----cchHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 233333333 2345555542 2235789999999999887531 110 014567777777651 133567778
Q ss_pred HHHHHHhhcCCCCCC-----------C-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHH
Q psy12605 195 TWVIVNLCRNKDPPP-----------S-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTV 262 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~-----------~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~ 262 (845)
..+|..++....... . ......+++.+..++...+... .+...++
T Consensus 167 l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~-----------------------~~~~~~l 223 (963)
T 2x19_B 167 LELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPS-----------------------CVRQKVL 223 (963)
T ss_dssp HHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCH-----------------------HHHHHHH
T ss_pred HHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-----------------------HHHHHHH
Confidence 888888774210000 0 1112234444444443322110 0344455
Q ss_pred HHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC
Q psy12605 263 WALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 314 (845)
.++........... ....+++.+...+ .+++++..|+.++..+....
T Consensus 224 ~~l~~wi~~~~~~~---~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 224 KCFSSWVQLEVPLQ---DCEALIQAAFAAL--QDSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp HHHHHHHTSSCCGG---GTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHcCCCCcc---cchHHHHHHHHHh--CCchHHHHHHHHHHHHHccc
Confidence 55532222111110 1233455566666 35779999999999998753
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.49 E-value=1.8e-05 Score=71.71 Aligned_cols=216 Identities=15% Similarity=0.190 Sum_probs=163.7
Q ss_pred HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCC
Q psy12605 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 208 (845)
+...+..++.+|.++-..++.+|+..+.+++..-++..+.+ +..|+-+++.+....+-.....++..+++-.+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 34578889999999988999999999999998888776654 44566777766667776777888888877442
Q ss_pred CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhH
Q psy12605 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 288 (845)
....+.+|.+..-..-.|+. ++.+...+|..++..++.... +++.-+
T Consensus 103 ---e~v~~vVp~lfanyrigd~k-------------------------ikIn~~yaLeeIaranP~l~~-----~v~rdi 149 (253)
T 2db0_A 103 ---ELVKSMIPVLFANYRIGDEK-------------------------TKINVSYALEEIAKANPMLMA-----SIVRDF 149 (253)
T ss_dssp ---HHHHHHHHHHHHHSCCCSHH-------------------------HHHHHHHHHHHHHHHCHHHHH-----HHHHHH
T ss_pred ---HHHHhhHHHHHHHHhcCCcc-------------------------ceecHHHHHHHHHHhChHHHH-----HHHHHH
Confidence 45678888888777777888 788888888888877766543 345678
Q ss_pred HhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCC
Q psy12605 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGL 368 (845)
Q Consensus 289 v~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~ 368 (845)
..++.+++..-+..|+..++.+.... ...+ ...+|.|..+|.+.++-+|..|..+|.+++..++..++.+.
T Consensus 150 ~smltskd~~Dkl~aLnFi~alGen~---~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~---- 220 (253)
T 2db0_A 150 MSMLSSKNREDKLTALNFIEAMGENS---FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI---- 220 (253)
T ss_dssp HHHTSCSSHHHHHHHHHHHHTCCTTT---HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH----
T ss_pred HHHhcCCChHHHHHHHHHHHHHhccC---cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH----
Confidence 88899999888999999999874332 2222 25789999999999999999999999999998888655433
Q ss_pred hHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 369 LPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 369 i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
.-++-+.+ .+..++...-.+|+.++
T Consensus 221 --~kl~e~~D-----~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 221 --KRLEELND-----TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp --HHHHHCCC-----SCHHHHHHHHHHHHHHH
T ss_pred --HHHHHhcC-----cHHHHHHHHHHHHHHHH
Confidence 22333333 35677777777777765
No 72
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.44 E-value=2.4e-05 Score=96.13 Aligned_cols=461 Identities=9% Similarity=0.016 Sum_probs=238.3
Q ss_pred HHHc-CCChHHHHHHHHHHHHHHcCCCC---ccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHH
Q psy12605 52 EAAR-KDNPELQLLAVQSARKLLSSDKN---PPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEV 127 (845)
Q Consensus 52 ~~l~-~~~~~~~~~a~~~l~~ll~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i 127 (845)
..+. +.++.++..|+..|++.+...-+ +.....+...+++.+.+.- .+.+.+|...+.+|..++..... .
T Consensus 46 ~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~--~~~~~vr~kl~~~la~i~~~~~p-~--- 119 (971)
T 2x1g_F 46 QLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA--GGPKIVLNRLCISLGAYIVHMLG-E--- 119 (971)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHTTC-C---
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHccc-c---
Confidence 4553 56788999999999998764211 1233444555666665553 23578999999999999875321 1
Q ss_pred HHcCChHHHHHhhCCC------ChhHHHHHHHHHHHhcCCC-----hhh----HHHHHhcCChhhHHhhh----cCCCC-
Q psy12605 128 VAAGAVPLFLRLLMSP------HSNVCEQAVWALGNIIGDG-----PQL----RDYVINMGVVPPLLSFI----KPDIP- 187 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~------~~~v~~~a~~~L~nla~~~-----~~~----r~~i~~~g~i~~Lv~ll----~~~~~- 187 (845)
=.+.++.|+.+++++ ++...+.++.+|..++.+- ..- ++.+.. .++.++.++ .....
T Consensus 120 -Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~--~~~~vl~ll~~~l~~~~~~ 196 (971)
T 2x1g_F 120 -WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAK--RVQLVIHTVERYLKLQMNR 196 (971)
T ss_dssp -------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHT--THHHHHHHHHHHHHHHTTS
T ss_pred -ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCC
Confidence 035788888888775 5678889999999887431 111 222222 345544443 21111
Q ss_pred ------HHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcc----------------cCCchhhHHHHHHHhhhCh
Q psy12605 188 ------ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH----------------HHDTSVSIYLWLSIIEKNP 245 (845)
Q Consensus 188 ------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~----------------~~~~~~~~~~~~~l~~~~~ 245 (845)
.+++..++.++............ .....++.+.. +. .++++
T Consensus 197 ~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~-------------- 259 (971)
T 2x1g_F 197 VWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENE-------------- 259 (971)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHH--------------
T ss_pred CCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcH--------------
Confidence 15777888888776652101111 34567776665 41 12233
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcCCh--hhHHHHHhcCchhhHHhh-------ccCCc---hhhHHHHHHHHHHHhcC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDGGN--DQIQMVIDSGVVPSLIPL-------LSHKE---VKVQTASLRAVGNIVTG 313 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~Lv~l-------L~~~~---~~v~~~al~~L~nl~~~ 313 (845)
++..|+.++..+..... +....+ . .+++.++.+ +...+ .......++.+..+...
T Consensus 260 -----------~~~~a~~~l~~i~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 260 -----------LAESCLKTMVNIIIQPDCHNYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp -----------HHHHHHHHHHHHHHCSGGGGCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCccccccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 77788888887766432 111111 1 122222221 23334 26666667777766532
Q ss_pred Chhh-H-----------HHHhcCCccchhhHhhcC-----CchhhHHHHHHHHHHhhcCC---------hHHH---HHHH
Q psy12605 314 TDEQ-T-----------QVILNCDALSHFPALLTH-----PKEKICKEAVWFLSNITAGN---------QAQV---QAVI 364 (845)
Q Consensus 314 ~~~~-~-----------~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~---------~~~~---~~l~ 364 (845)
.... . ..+. ..++.++.+..+ .++++...+++.+..++... .... ..++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (971)
T 2x1g_F 327 HSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY 404 (971)
T ss_dssp THHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 2111 0 1111 344555555533 47788999999888775310 1111 1111
Q ss_pred hcCChHHHHHHhhhcccc---cCC-------hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-----CCHH
Q psy12605 365 DAGLLPKIIANLQKVGRI---VLR-------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-----PHSN 429 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~---~~~-------~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-----~~~~ 429 (845)
..+++.++..+..+.+. ..+ ...|..+..++..++..-++..-..+ .+.+...+.+ .+..
T Consensus 405 -~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~----~~~l~~~l~~~~~~~~~w~ 479 (971)
T 2x1g_F 405 -AHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL----AAMLDEAIADLQRHPTHWT 479 (971)
T ss_dssp -HHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH----HHHHHHHHHHHHHCTTCCH
T ss_pred -HHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHhccCCCCcHH
Confidence 23445555555322110 001 13455666666666653331111111 1222223322 5677
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc---C-CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHH
Q psy12605 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI---K-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 505 (845)
Q Consensus 430 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll---~-~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~ 505 (845)
.++.++++++.++....... ...++.++.++ . ++....++..++|+++.++......+ ..+...++.+.
T Consensus 480 ~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~ 552 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAINLLV 552 (971)
T ss_dssp HHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHH
Confidence 89999999999987543211 12233333332 2 22355778889999999987643222 45677788887
Q ss_pred HhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccccccccc
Q psy12605 506 ILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVS 569 (845)
Q Consensus 506 ~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~ 569 (845)
..+. +.|... |+ +..++........- .-..++..+..++.+++.+...+..++.+++.++
T Consensus 553 ~~l~---~~v~~~A~~al~~l~~~~~~~l~p-~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 553 RGLN---SSMSAQATLGLKELCRDCQLQLKP-YADPLLNACHASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHH---SSCHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHhC---hHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7663 556554 44 66666432211111 1124555666667665433333444455555543
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.43 E-value=5.1e-05 Score=68.89 Aligned_cols=215 Identities=14% Similarity=0.193 Sum_probs=156.2
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~ 164 (845)
+..++..++.+| .++-..+|.+|..++..++..-++.... .+..|+-+++ +..-.+.....+++|.++...|+
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 445788999999 4666789999999999999877765554 3445666654 45667777888999999977776
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhC
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKN 244 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~ 244 (845)
..+. .+|.+..-.+-. +..++.+..++|..+.+.++ ....+.+.-+..++.+.|..
T Consensus 104 ~v~~-----vVp~lfanyrig-d~kikIn~~yaLeeIaranP-----~l~~~v~rdi~smltskd~~------------- 159 (253)
T 2db0_A 104 LVKS-----MIPVLFANYRIG-DEKTKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNRE------------- 159 (253)
T ss_dssp HHHH-----HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSSHH-------------
T ss_pred HHHh-----hHHHHHHHHhcC-CccceecHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCChH-------------
Confidence 5443 356666555555 56899999999999998762 34556777788888876654
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 245 PQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 245 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
-+..|+..+..+.. +..+. -...+|.|..+|.+.+.-|+..|..+|.+++..++..+..+.
T Consensus 160 ------------Dkl~aLnFi~alGe---n~~~y--v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~-- 220 (253)
T 2db0_A 160 ------------DKLTALNFIEAMGE---NSFKY--VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI-- 220 (253)
T ss_dssp ------------HHHHHHHHHHTCCT---TTHHH--HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH--
T ss_pred ------------HHHHHHHHHHHHhc---cCccc--cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH--
Confidence 33444444444443 33333 246789999999999999999999999999999888777553
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
..+.-+++.++.+....-..|+.+.
T Consensus 221 ----~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 221 ----KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp ----HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3455667777777777766777663
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.39 E-value=3.1e-05 Score=90.39 Aligned_cols=298 Identities=13% Similarity=0.106 Sum_probs=189.8
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCC-------ChhHHHHHHHHHHHHhcCChhhHHHHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD-------RPNLQFEAAWALTNIASGTSAQTQEVV 128 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~i~~~a~~~L~~la~~~~~~~~~i~ 128 (845)
++++..+-.|+..|.-+-.... . .++..|...|..++ ++.+|..|+..|+-+..++.+ .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e--- 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I--- 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H---
T ss_pred CCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--H---
Confidence 4556666667777765433221 1 14677788885333 367899999999987655321 1
Q ss_pred HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCC
Q psy12605 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 208 (845)
.+++.|.++|.+++..+++.|+.+||.+-..+. +.+ ++..|+..+.+..+..+++.++..|.-+..+.
T Consensus 472 --ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--- 539 (963)
T 4ady_A 472 --EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR--- 539 (963)
T ss_dssp --HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---
Confidence 256778888888877778899999998732221 111 24455555544446789999999999887655
Q ss_pred CChhHHhhHHHHHHhhcc-cCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH--HhhcCChhhHHHHHhcCch
Q psy12605 209 PSMSTIIELLPALNILIH-HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS--YLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~~~g~i 285 (845)
...++.++..+. +.++- ++..++.++. |...++... +
T Consensus 540 ------~e~~~~li~~L~~~~dp~-------------------------vRygaa~alglAyaGTGn~~a---------I 579 (963)
T 4ady_A 540 ------QELADDLITKMLASDESL-------------------------LRYGGAFTIALAYAGTGNNSA---------V 579 (963)
T ss_dssp ------GGGGHHHHHHHHHCSCHH-------------------------HHHHHHHHHHHHTTTSCCHHH---------H
T ss_pred ------hHHHHHHHHHHHhCCCHH-------------------------HHHHHHHHHHHHhcCCCCHHH---------H
Confidence 234555555554 34554 6666666554 333333322 3
Q ss_pred hhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 286 PSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 286 ~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+.|++.+ .+.+..++..|+-+|+.+..++++ .++.++.+| .+.++.+|..|+++|+.++.+++..
T Consensus 580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---- 646 (963)
T 4ady_A 580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---- 646 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----
Confidence 3344444 456788999999999999877542 345566544 5689999999999999998876532
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH-HHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHH
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ-EVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGN 440 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~n 440 (845)
.++..|..+..+ .+..|+..|+.+|+.+..++.+... .+ .+....|.....+ .++..+.-+..+.|-
T Consensus 647 ---~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 647 ---SAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGI 716 (963)
T ss_dssp ---HHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 245556666655 4899999999999999876654310 00 0122335555543 456677666666665
Q ss_pred hh
Q psy12605 441 II 442 (845)
Q Consensus 441 l~ 442 (845)
+-
T Consensus 717 l~ 718 (963)
T 4ady_A 717 MN 718 (963)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 75
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.36 E-value=0.00022 Score=87.50 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----C
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-----T 120 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-----~ 120 (845)
+..++ ..+.++|++.+.+|-..|..+-. .+ +..+.+..+|..+.++.+|..|+.+|.+.... +
T Consensus 9 l~~~l-~~~~~~d~~~r~~A~~~L~~~~~-~p----------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~ 76 (971)
T 2x1g_F 9 LEEAV-VSFYRSNSQNQAITHEWLTDAEA-SP----------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVP 76 (971)
T ss_dssp --CTH-HHHHTSTTTC----CHHHHHTTT-ST----------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHHc-CH----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCC
Confidence 44555 45667777788888888876422 21 13566788886667889999999999987642 2
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-----CHHHHHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-----PISFLRNVT 195 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-----~~~~~~~a~ 195 (845)
++.+..+ ....++.+...- ++...++.+.+.+|..|+...-. . =.+.++.++..++.+. +...+..+.
T Consensus 77 ~~~~~~i-r~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l 149 (971)
T 2x1g_F 77 PENREEL-KQKILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-E----WPGAIEEVINTFQNQRMPNVSADVQLWIML 149 (971)
T ss_dssp GGGHHHH-HHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-C----------HHHHHHHHTC----CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-c----ccHHHHHHHHHHhccccccCCCHHHHHHHH
Confidence 3333333 334555555543 33578999999999998855321 1 0235677777775421 235677788
Q ss_pred HHHHHhhc
Q psy12605 196 WVIVNLCR 203 (845)
Q Consensus 196 ~~L~~l~~ 203 (845)
.+|..++.
T Consensus 150 ~iL~~l~E 157 (971)
T 2x1g_F 150 EVLTAIPE 157 (971)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHH
Confidence 88887764
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.29 E-value=0.0062 Score=74.40 Aligned_cols=422 Identities=12% Similarity=0.103 Sum_probs=217.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcC-----
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASG----- 119 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~----- 119 (845)
+.+++ ....++|...+ |-..|.++ ... -|....|++++... .+..+|..|+..|.+....
T Consensus 7 l~~~L-~~~~spd~~~r--Ae~~L~~~-~~~----------p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 7 VAKFL-AESVIASTAKT--SERNLRQL-ETQ----------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHH-HHTTSGGGHHH--HHHHHHHH-HTS----------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHH-HHhcCCCHHHH--HHHHHHHh-hcC----------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455 44556666666 88888765 222 13577888888433 4568999999999987632
Q ss_pred ------ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHH
Q psy12605 120 ------TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLR 192 (845)
Q Consensus 120 ------~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~ 192 (845)
+++.+..+. . .++..+.+++..++.+++.++..|+... |. + =.+.++.|+..++++. ...+.
T Consensus 73 ~~~~~l~~~~k~~ik-~----~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~----Wp~ll~~L~~~l~s~~-~~~~~ 141 (960)
T 1wa5_C 73 NGNHLLPANNVELIK-K----EIVPLMISLPNNLQVQIGEAISSIADSDFPD-R----WPTLLSDLASRLSNDD-MVTNK 141 (960)
T ss_dssp SSCBSSCHHHHHHHH-H----HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-T----CTTHHHHHHTTCCSSC-TTHHH
T ss_pred ccCCCCCHHHHHHHH-H----HHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-c----hhHHHHHHHHHhCCCC-HHHHH
Confidence 222333222 2 3344444455889999999999987431 10 0 0135777888887653 35778
Q ss_pred HHHHHHHHhhcCCCCCCCh----h----HHhhHHHHHHhh-------cccCCchhhHHHHHHHhhhChhhHHhhhhhHHH
Q psy12605 193 NVTWVIVNLCRNKDPPPSM----S----TIIELLPALNIL-------IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKI 257 (845)
Q Consensus 193 ~a~~~L~~l~~~~~~~~~~----~----~~~~~l~~L~~l-------l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (845)
.++.++..+++........ . ......+.+..+ +....... +... ...++
T Consensus 142 ~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~------------~~~~----~~~~~ 205 (960)
T 1wa5_C 142 GVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK------------ASLN----ILFDV 205 (960)
T ss_dssp HHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--C------------HHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------------HHHH----HHHHH
Confidence 8999999999854321110 0 122233333332 22211100 0000 00113
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHh--cCchhhHHhhccCC------c---------hhhHHHHHHHHHHHhcCChhhHHH
Q psy12605 258 LVDTVWALSYLTDGGNDQIQMVID--SGVVPSLIPLLSHK------E---------VKVQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv~lL~~~------~---------~~v~~~al~~L~nl~~~~~~~~~~ 320 (845)
...++.++.++...+-. ..+.+ ...++.+..+|... + ..++..+++++..+..........
T Consensus 206 ~~~~~k~~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~ 283 (960)
T 1wa5_C 206 LLVLIKLYYDFNCQDIP--EFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP 283 (960)
T ss_dssp HHHHHHHHHHHHSSCCC--HHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhhccch--HHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555444322111 11101 12223334444210 0 246778888888876443332111
Q ss_pred HhcCCccchhhHhhc-----CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHH-----HHhh--hcc--------
Q psy12605 321 ILNCDALSHFPALLT-----HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKII-----ANLQ--KVG-------- 380 (845)
Q Consensus 321 i~~~~~l~~L~~lL~-----~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv-----~lL~--~~~-------- 380 (845)
.. ..+++..++.+. ..++.++..++..+..++.. +...+.+.....++.++ ..+. ...
T Consensus 284 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp 361 (960)
T 1wa5_C 284 MI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP 361 (960)
T ss_dssp HH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred HH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence 11 134455555553 34578888899888887543 22111110112333333 2221 000
Q ss_pred --------cccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCh
Q psy12605 381 --------RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM------SPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 381 --------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~------~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+..+....+..|..+|..++...++..-. ..++.+.+.+. +.+...++.|+.+++.++....
T Consensus 362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~----~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTN----IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp HHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred HHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHH----HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 00122356777888888887654322111 12233334444 4567788999999999975321
Q ss_pred -------------HHHHHHHhCCChHHHHhccCCC--CChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCC
Q psy12605 447 -------------QLRDYVINMGVVPPLLSFIKPD--IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 447 -------------~~~~~l~~~g~l~~L~~ll~~~--~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
+....+. ..++..+.+. ...-++..++|+++.++... ........++.+...+.+.
T Consensus 438 ~~~~~~~~~~~~~~l~~~l~-----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNVVDFFT-----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQLIELMPILATFLQTD 508 (960)
T ss_dssp CBTTBCCCBCTTCCHHHHHH-----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHHHHHHHHHHHHHTTCS
T ss_pred cccCCcccccccccHHHHHH-----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCC
Confidence 1111110 1122223333 24567788999999999764 2356778888888888777
Q ss_pred ChhHHHH-HH-HHhhh
Q psy12605 512 DTSVSIY-LW-LSIIE 525 (845)
Q Consensus 512 d~~v~~~-~~-l~~l~ 525 (845)
+..|..+ |+ +..+.
T Consensus 509 ~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 509 EYVVYTYAAITIEKIL 524 (960)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHH
Confidence 7777665 44 54443
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.28 E-value=3.4e-05 Score=80.98 Aligned_cols=262 Identities=13% Similarity=0.087 Sum_probs=154.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
..++ +++.++|...+.-....+..+.... +... =++..|.+=+ .++++-+|-.|+++|+++.. ++-...
T Consensus 71 ~~v~-kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~--~~m~~~ 139 (355)
T 3tjz_B 71 FAMT-KLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDM-TGKEDSYRGPAVRALCQITD--STMLQA 139 (355)
T ss_dssp HHHH-GGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHH-HSSCHHHHHHHHHHHHHHCC--TTTHHH
T ss_pred HHHH-HHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhc-CCCcHhHHHHHHHHHhcCCC--HHHHHH
Confidence 3445 5788999998888888887765542 2111 1467777788 46889999999999999975 343333
Q ss_pred HHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 127 VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
..+++.+.|.+.++.++..|+.+...+....|+..+ +.++.+.+++.+.+ .-++.+|+.+|..+++.+
T Consensus 140 -----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 140 -----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDN-IMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp -----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC-
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc-
Confidence 567788899999999999999999999988776432 57888888887764 467789999999998754
Q ss_pred CCCChhHHhhHHHHHHhhcccC---CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC-hhhHHHHHhc
Q psy12605 207 PPPSMSTIIELLPALNILIHHH---DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG-NDQIQMVIDS 282 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 282 (845)
...+..++..+... ++. .+...+..+..+...+ +. ...
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~-------------------------~q~~llr~l~~~~~~d~~~-----~~~ 249 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPF-------------------------AYCMMIRVASRQLEDEDGS-----RDS 249 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHH-------------------------HHHHHHHHHTCC---------------
T ss_pred --------hHHHHHHHHHHhcCCCcChH-------------------------HHHHHHHHHHHhccccchh-----hHH
Confidence 11333444333332 233 2222333332332222 11 134
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
..++.+.++|++.++.|...|+++|..+...... .. ..++..+..++.++++++|-.|+..|..+....+...+.
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~ 324 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA 324 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH
Confidence 6678888999999999999999999998542211 11 246788888899999999999999999887766544321
Q ss_pred HHhcCChHHHHHHhhhc
Q psy12605 363 VIDAGLLPKIIANLQKV 379 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~ 379 (845)
.-..+.+++.++
T Consensus 325 -----~n~~ie~li~d~ 336 (355)
T 3tjz_B 325 -----CNLDLENLVTDA 336 (355)
T ss_dssp -----------------
T ss_pred -----HHHHHHHHccCC
Confidence 223445555553
No 78
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.25 E-value=0.00015 Score=77.65 Aligned_cols=343 Identities=13% Similarity=0.092 Sum_probs=197.7
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh---hhHHHHHHcCCh-HHHHH-hhCCCChhHHHHHHHHHHHhcCC
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS---AQTQEVVAAGAV-PLFLR-LLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~---~~~~~i~~~g~i-~~L~~-lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
..++..++.+|+...+.++....+..+..+...++ .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 45788999999877888888888888888887765 444444443322 22333 33444444556777776777644
Q ss_pred ChhhHHHHHhcCChh--hHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChh-HHhhHHHHHHhhcccC-CchhhHHHH
Q psy12605 162 GPQLRDYVINMGVVP--PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS-TIIELLPALNILIHHH-DTSVSIYLW 237 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~--~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~-~~~~~~~~~ 237 (845)
++...+.+-. .+. .++..+.+..+...+..++.+|..|.+.+.....+. .....+|.++..+... +.......+
T Consensus 156 ~~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 4331111100 112 344455543333446678888888887664332221 1223566665544321 000000000
Q ss_pred HHHh-hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch--hhHHhhcc-CCchhhHHHHHHHHHHHhcC
Q psy12605 238 LSII-EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV--PSLIPLLS-HKEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 238 ~~l~-~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~Lv~lL~-~~~~~v~~~al~~L~nl~~~ 313 (845)
.... ..+.+ ++..++.++.-++... +..+.+...++. +.|+..++ +..++|.+-++.+|.|+...
T Consensus 234 ~~~~~~~~~Q----------l~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~ 302 (480)
T 1ho8_A 234 ATNSNHLGIQ----------LQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 302 (480)
T ss_dssp -----CCHHH----------HHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS
T ss_pred cccCCCccHH----------HHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcc
Confidence 0000 00112 5566666666666543 355566555543 55666664 46789999999999999876
Q ss_pred Ch----h-hHHHHhcCCccchhhHhhcC---CchhhHHHHHHHHHHh-------h--------------cCChHHHH-HH
Q psy12605 314 TD----E-QTQVILNCDALSHFPALLTH---PKEKICKEAVWFLSNI-------T--------------AGNQAQVQ-AV 363 (845)
Q Consensus 314 ~~----~-~~~~i~~~~~l~~L~~lL~~---~~~~~~~~a~~~L~nl-------~--------------~~~~~~~~-~l 363 (845)
.. . ..+.+...+++ .+++.|.. .|+++....-.....+ + .-+|.... .+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~F 381 (480)
T 1ho8_A 303 RVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGF 381 (480)
T ss_dssp SSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHH
T ss_pred cchhhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhH
Confidence 42 1 12233334454 45555533 4665554332211111 1 00111111 22
Q ss_pred Hhc----------CChHHHHHHhhhccc-c----cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCH
Q psy12605 364 IDA----------GLLPKIIANLQKVGR-I----VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 428 (845)
Q Consensus 364 ~~~----------~~i~~Lv~lL~~~~~-~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 428 (845)
... .++..|+++|.+... . ..++.+..-||.=++.++.+.|+.+..+-+.|+=..+.+++.++++
T Consensus 382 W~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~ 461 (480)
T 1ho8_A 382 WSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDS 461 (480)
T ss_dssp HHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCH
Confidence 211 257889999974200 0 0367788889999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy12605 429 NVCEQAVWALGNIIG 443 (845)
Q Consensus 429 ~v~~~a~~~L~nl~~ 443 (845)
+|+..|+.|+..+..
T Consensus 462 ~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 462 RVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 79
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.22 E-value=4.3e-05 Score=77.00 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=136.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEV 127 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i 127 (845)
.+. +.+++.+...+..|+..|..++.......... -..+++.|...|..+.+..++..|+.+|..++..-.......
T Consensus 19 ~l~-~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFY-DKLEEKKWTLRKESLEVLEKLLTDHPKLENGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THH-HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHH-hhhccCCHHHHHHHHHHHHHHHccCCCCCCCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 355 78899999999999999999987622110000 123578888888436788999999999999995322211121
Q ss_pred HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 128 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
+ ...+|.++..+.+++..+++.|..+|..++.... .. ..++.+...+.+. +..++..++..|..+.....+
T Consensus 96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNK-NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 1 2489999999999999999999999999986532 22 1467788888876 448999999999997655432
Q ss_pred C-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 208 P-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 208 ~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
. ........++|.+..++.+.+++ ++..|..++..++.
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~-------------------------VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPT-------------------------VRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHH-------------------------HHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChH-------------------------HHHHHHHHHHHHHH
Confidence 2 23345668999999999888888 88888888877653
No 80
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=6.2e-06 Score=83.25 Aligned_cols=185 Identities=12% Similarity=0.138 Sum_probs=135.8
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCC-hhhHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDG-PQLRD 167 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~-~~~r~ 167 (845)
-+.+.+.+ .+.+...|..|+..|..+..+.++....-. ...++.|.+++. +++..++..|+.+++.++..- +.+..
T Consensus 17 ~~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp CTTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CHHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34577888 467789999999999999865322111000 135778888994 899999999999999998431 11222
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.+ ...++.++..+.+. ...++..+..+|..++.... ...++|.+...+.+.++.
T Consensus 95 ~~--~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~---------------- 148 (242)
T 2qk2_A 95 YA--SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPS---------------- 148 (242)
T ss_dssp HH--HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHH----------------
T ss_pred HH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChH----------------
Confidence 21 12588888888876 55899999999999987542 457889999999888887
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcC-Chh-hHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDG-GND-QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
++..++..|..+... .++ ...... ..+++.++.+|.++++.+|..|..+++.++.
T Consensus 149 ---------vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 149 ---------VKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp ---------HHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 888999999885433 232 112222 2678999999999999999999999999974
No 81
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.15 E-value=3.9e-05 Score=73.01 Aligned_cols=186 Identities=17% Similarity=0.155 Sum_probs=142.3
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
...+..|..++...|+. ++..++.+|-.+...-+.......-..+++.++.++.+
T Consensus 32 e~~l~~L~~LL~dkD~~-------------------------vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~ 86 (265)
T 3b2a_A 32 KRALFLILELAGEDDET-------------------------TRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ 86 (265)
T ss_dssp HHHHHHHHHHTTSSCHH-------------------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS
T ss_pred hhHHHHHHHHHhccchH-------------------------HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 35788888899888888 88899999988776544434444455788999999999
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHH
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 374 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~ 374 (845)
++..+...|++||+.+..+.+-..+.+. .+...+.++++++++-++.+++..++.+-.... ..+++..+.+
T Consensus 87 ~dEkval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~s 157 (265)
T 3b2a_A 87 ENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINE 157 (265)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHH
Confidence 9999999999999999877544333332 255778888899999999999999998822221 1234667778
Q ss_pred HhhhcccccCChhHHHHHHHHHHHHhcCC--hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 375 NLQKVGRIVLRPNLQFEAAWALTNIASGT--SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 375 lL~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
++.+ .+.++|..+..++.+++..+ ++... +.+.-+-.+|++.++.+++.|+.++..+...
T Consensus 158 Ll~S-----kd~~vK~agl~~L~eia~~S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 158 LVVS-----PDLYTKVAGFCLFLNMLNSSADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHTC-----SSHHHHHHHHHHHHHHGGGCSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHhC-----CChhHHHHHHHHHHHhhcccCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8844 58999999999999999743 22222 3445577889999999999999999998875
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.14 E-value=3.7e-05 Score=82.42 Aligned_cols=255 Identities=15% Similarity=0.146 Sum_probs=156.6
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC--ChHHHHHhhCC---------------C--ChhHHHHHH
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG--AVPLFLRLLMS---------------P--HSNVCEQAV 152 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g--~i~~L~~lL~s---------------~--~~~v~~~a~ 152 (845)
.++..|....+...+.-++.+|..+... ++.+..+.+.+ .+|++++.+.. + ...++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4566664323345577888999998864 77888887643 36777654431 1 245688999
Q ss_pred HHHHHhcCCChhhHHHHHhcCCh--hhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC-----hhHHhhHHHHHHhhc
Q psy12605 153 WALGNIIGDGPQLRDYVINMGVV--PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS-----MSTIIELLPALNILI 225 (845)
Q Consensus 153 ~~L~nla~~~~~~r~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~~~l~~L~~ll 225 (845)
.|++-++.+ ++..+.+...+.. +.|+..++....+.+.|.++.+|.|+......... +....++++.+-.+-
T Consensus 250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS 328 (480)
T ss_dssp HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh
Confidence 999999965 4566677666643 56777787777789999999999999875521111 112234555444444
Q ss_pred cc--CCchhh--HHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh---------hHHHHHh--cCchhhHHh
Q psy12605 226 HH--HDTSVS--IYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND---------QIQMVID--SGVVPSLIP 290 (845)
Q Consensus 226 ~~--~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~---------~~~~~~~--~g~i~~Lv~ 290 (845)
.. .|+++. +..+......+- ...- ..-++......-.-+.++- +...+.+ ..++..|+.
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~--~~lt----sfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~ 402 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEY--QELT----SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIE 402 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHH--HTCC----HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHH--Hhcc----cHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHH
Confidence 33 455521 011100000000 0000 0000111111111111111 1111111 135678899
Q ss_pred hccC----------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 291 LLSH----------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 291 lL~~----------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
+|.+ .++.+..-|+.=||.++...+..+..+-+.|+-..++.++.++|+++|.+|+.++..+..
T Consensus 403 iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 403 LLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9963 467789999999999999988888888888999999999999999999999999987643
No 83
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=0.0001 Score=70.16 Aligned_cols=202 Identities=16% Similarity=0.134 Sum_probs=150.7
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
+.+..|..+|.+.|+.++..++.+|..+-..-+. .+...++ ..++.++.++.+. +..+.-.|+.+|..+..+.+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL-- 108 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQE-NEKVTIKALRALGYLVKDVPM-- 108 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCB--
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCC--
Confidence 4678889999999999999999999999866333 3444444 3589999999776 668999999999999998743
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
..........+|..++.++++- +..+++..+..+.-.+. ..+++..+.
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~i-------------------------l~~eaae~Lgklkv~~~-------~~~V~~~l~ 156 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDM-------------------------MRIETIDVLSKLQPLED-------SKLVRTYIN 156 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHH-------------------------HHHHHHHHHHHCCBSCC-------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCch-------------------------HHHHHHHHhCcCCcccc-------hHHHHHHHH
Confidence 3344567788888888877776 77888888887732221 124456788
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
.++++.+..++.++++++.+++..+++. .+ -.+++.-+-.++++.|+.+++.|+.++-.+.... +..+++
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~--~i-~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p-------i~~~~~ 226 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADS--GH-LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP-------LLENVK 226 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSC--CC-GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC-------CCSCCH
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCH--HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc-------ccHhHH
Confidence 8889999999999999999998654321 01 1246777899999999999999999999985542 124566
Q ss_pred HHHHHHhhh
Q psy12605 370 PKIIANLQK 378 (845)
Q Consensus 370 ~~Lv~lL~~ 378 (845)
+.+...+..
T Consensus 227 ~~~~~~~~~ 235 (265)
T 3b2a_A 227 IELLKISRI 235 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 84
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.07 E-value=0.0015 Score=80.04 Aligned_cols=409 Identities=11% Similarity=0.082 Sum_probs=196.9
Q ss_pred HHHc-CCChHHHHHHHHHHHHHHcCCC---CccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC-hhhHHH
Q psy12605 52 EAAR-KDNPELQLLAVQSARKLLSSDK---NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT-SAQTQE 126 (845)
Q Consensus 52 ~~l~-~~~~~~~~~a~~~l~~ll~~~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~-~~~~~~ 126 (845)
..+. +.++.++..|+..|++.+...- ++.....+...+++.+.+.- .+.+.+|...+.++..++... ++.-
T Consensus 64 ~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~--~~~~~ir~kl~~~la~i~~~~~p~~W-- 139 (963)
T 2x19_B 64 QLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFA--SGSKIVLTRLCVALASLALSMMPDAW-- 139 (963)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHTTTTS--
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhCcccc--
Confidence 4443 5678899999999999876431 11123333444555555431 235789999999999998641 1111
Q ss_pred HHHcCChHHHHHhhCC-----CChhHHHHHHHHHHHhcCCChh------hHHHHHh--cCChhhH----HhhhcCCC-CH
Q psy12605 127 VVAAGAVPLFLRLLMS-----PHSNVCEQAVWALGNIIGDGPQ------LRDYVIN--MGVVPPL----LSFIKPDI-PI 188 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s-----~~~~v~~~a~~~L~nla~~~~~------~r~~i~~--~g~i~~L----v~ll~~~~-~~ 188 (845)
.+.++.|+.++++ +++...+.++.+|..++.+... -|..+.+ ...++.+ ..++.... +.
T Consensus 140 ---p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~ 216 (963)
T 2x19_B 140 ---PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPS 216 (963)
T ss_dssp ---TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCH
T ss_pred ---chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 2578888888876 3566788888888888742100 1111110 0123333 33333322 22
Q ss_pred HHHHHHHHHHHHhhcCCCCCC--------------ChhHHhhHHHHHHhhcccCCchh---hHH-HHHHHhhhChhhHHh
Q psy12605 189 SFLRNVTWVIVNLCRNKDPPP--------------SMSTIIELLPALNILIHHHDTSV---SIY-LWLSIIEKNPQISKI 250 (845)
Q Consensus 189 ~~~~~a~~~L~~l~~~~~~~~--------------~~~~~~~~l~~L~~ll~~~~~~~---~~~-~~~~l~~~~~~~~~~ 250 (845)
.+...+..++.....-..... .......++..+..++....+.- .+. .+..+....+.+...
T Consensus 217 ~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQA 296 (963)
T ss_dssp HHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHH
Confidence 366666666654333111000 01122345555555554322110 000 001111111111000
Q ss_pred hh-hhHHHHHHHHHHHHHhhcCChhhHHHHHh--------cCchhhHHhhccC-----CchhhHHHHHHHHHHHhcCC--
Q psy12605 251 LV-SKMKILVDTVWALSYLTDGGNDQIQMVID--------SGVVPSLIPLLSH-----KEVKVQTASLRAVGNIVTGT-- 314 (845)
Q Consensus 251 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~g~i~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~-- 314 (845)
.. .+.......+..+..+..... ..+.+ ..+++.++....+ .++.+...++..+.+++...
T Consensus 297 ~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~ 373 (963)
T 2x19_B 297 VQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILS 373 (963)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHh
Confidence 00 011122333344433332111 11110 1334444444443 35567777788877776521
Q ss_pred ------hhhHHHHhc--CCccchhhHhhcCCch---------------hhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 315 ------DEQTQVILN--CDALSHFPALLTHPKE---------------KICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 315 ------~~~~~~i~~--~~~l~~L~~lL~~~~~---------------~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
+.....+.. ...++.++..+..+++ +.|..+..+|..++.. .....++.
T Consensus 374 ~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~--------~~~~~l~~ 445 (963)
T 2x19_B 374 FEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEM--------LGAELLSN 445 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH--------HTHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHH--------ccHHHHHH
Confidence 111111110 0123344444432211 1234444455444321 11123333
Q ss_pred HHHHhhhcc---cccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCC
Q psy12605 372 IIANLQKVG---RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL---MSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 372 Lv~lL~~~~---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
+.+.+...- ....++..+..++++++.++.+..+.. ...++.++..+ .++++.++..++|+++.++..-
T Consensus 446 ~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l 520 (963)
T 2x19_B 446 LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520 (963)
T ss_dssp HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 333332110 011478889999999999987643211 11223333333 3357889999999999988531
Q ss_pred hHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 446 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
....+ .-..+++.++..+.+ ..+...+++++.++|...
T Consensus 521 ~~~~~--~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 521 ADHPV--MINSVLPLVLHALGN---PELSVSSVSTLKKICREC 558 (963)
T ss_dssp HHCHH--HHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHT
T ss_pred HhCHH--HHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHH
Confidence 11111 123677888888754 578889999999998643
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.05 E-value=5.8e-07 Score=81.10 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=92.2
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
....++.++.+|.++++.++..|+.+|+.+.. ..++.|+.+|+++++.+|..|+++|+++.. +
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 44677889999999999999999999887621 125889999999999999999999999832 1
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
..++.|+..+.+ .++.++..|+++|+.+.. ...++.|..+++++++.|+..|+++|++
T Consensus 73 ------~a~~~L~~~L~d-----~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ------RAVEPLIKLLED-----DSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHH-----CCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 247888899976 489999999999999852 2357889999999999999999999876
Q ss_pred h
Q psy12605 441 I 441 (845)
Q Consensus 441 l 441 (845)
|
T Consensus 131 i 131 (131)
T 1te4_A 131 H 131 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.3e-05 Score=79.05 Aligned_cols=191 Identities=16% Similarity=0.235 Sum_probs=135.5
Q ss_pred HHHhhccCCChhHHHHHHHHHHH-HhcCChhhHHHHHH-cCChHHHHHhh-CCCChhHHHHHHHHHHHhcCCC--hhhH-
Q psy12605 93 LVECLERSDRPNLQFEAAWALTN-IASGTSAQTQEVVA-AGAVPLFLRLL-MSPHSNVCEQAVWALGNIIGDG--PQLR- 166 (845)
Q Consensus 93 Lv~lL~~~~~~~i~~~a~~~L~~-la~~~~~~~~~i~~-~g~i~~L~~lL-~s~~~~v~~~a~~~L~nla~~~--~~~r- 166 (845)
+.+.+ .+.+...|..|+..|.. +..++++....-.+ ...+..|.+.+ ++++..++..|+.+|+.++..- +.+.
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556 45677889999999999 87543332200001 13577888888 7889999999999999998422 1222
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..... .+|.++..+.+. ...++..+..++..++..-++.........+++.|...+.+.++.
T Consensus 100 ~y~~~--llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~--------------- 161 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQ--------------- 161 (249)
T ss_dssp HHHHH--HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHH---------------
T ss_pred HHHHH--HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChH---------------
Confidence 22222 578888888776 457899999999999986533111111457888899999888887
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCCh---hhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGN---DQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
++..++.+|..+..... ......+...+++.+.+++.++++.+|..|..+++.++.
T Consensus 162 ----------vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 162 ----------IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp ----------HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88889888888775443 222233336889999999999999999999999999863
No 87
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.98 E-value=1.5e-06 Score=78.33 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=79.5
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
...++.|+.+|+ ++++.+|..|+++|..+... .++.|+++|+++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~-~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMA-DENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CC-SSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhc-CCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 346888999994 67889999999988876431 36899999999999999999999999863 1
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
..++.|+.++.++ +..++..|+++|.++.. ...++.|..++.++++.
T Consensus 73 ------~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~ 119 (131)
T 1te4_A 73 ------RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGF 119 (131)
T ss_dssp ------HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTH
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHH
Confidence 1377888888765 44899999999998852 35788899999888887
No 88
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.97 E-value=6.6e-05 Score=75.63 Aligned_cols=193 Identities=10% Similarity=0.078 Sum_probs=131.9
Q ss_pred HHHhhCCCChhHHHHHHHHHHH-hcCCChhhHHHHHh-cCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC-CCCChh
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGN-IIGDGPQLRDYVIN-MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD-PPPSMS 212 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~n-la~~~~~~r~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 212 (845)
+.+.+.+++..-|..|+..|.. +...++.......+ ...+..|...+..+.+..++..|+.+|..++.+-. +.-...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566788899999999999999 87443322100000 02355666777445466889999999999997653 222113
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL 292 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 292 (845)
.....+|.++..+.+..+. ++..+..++..+....+.....-.-..+++.|...|
T Consensus 101 y~~~llp~ll~~l~dkk~~-------------------------V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l 155 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPS-------------------------VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM 155 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHH-------------------------HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH
Confidence 5567889999988877776 777777777666543211000000013567788889
Q ss_pred cCCchhhHHHHHHHHHHHhcCChh---hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 293 SHKEVKVQTASLRAVGNIVTGTDE---QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 293 ~~~~~~v~~~al~~L~nl~~~~~~---~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
.++++.++..++.+|+.++..... .....+....+|.+.+++.+.+.++|..|..++..++
T Consensus 156 ~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 156 KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999865432 1112222468899999999999999999999999873
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.90 E-value=0.07 Score=64.76 Aligned_cols=359 Identities=12% Similarity=0.094 Sum_probs=175.1
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHH-HhhccCCChhHHHHHHHHHHHHhcCC---h--hhHHHHHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLV-ECLERSDRPNLQFEAAWALTNIASGT---S--AQTQEVVA 129 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~la~~~---~--~~~~~i~~ 129 (845)
+.+++....++.++...++- .+...+++.++++.+. .+|. +++.+..|+.+|..+.+.. + +.-..+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 45667777788888888762 3467788899999999 8883 5789999999999998632 1 11112211
Q ss_pred --cCChHHH--------------HHhhCCCChhHHHHHHHHHHHhcCC-------ChhhHHHHHhcCChhhHHhhhcCCC
Q psy12605 130 --AGAVPLF--------------LRLLMSPHSNVCEQAVWALGNIIGD-------GPQLRDYVINMGVVPPLLSFIKPDI 186 (845)
Q Consensus 130 --~g~i~~L--------------~~lL~s~~~~v~~~a~~~L~nla~~-------~~~~r~~i~~~g~i~~Lv~ll~~~~ 186 (845)
.+.++.+ ...-...+.+....-++.+..+... .+..+..+. .++..|+.+-..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~- 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIE- 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCC-
Confidence 0111111 1111222455555555555444321 122122211 0122333333333
Q ss_pred CHHHHHHHHHHHHHhhcC--CCCCCC---hhHHhhHHHHHHhhcccCC------chhhHHHHHHHhhhChhhHHhhhhhH
Q psy12605 187 PISFLRNVTWVIVNLCRN--KDPPPS---MSTIIELLPALNILIHHHD------TSVSIYLWLSIIEKNPQISKILVSKM 255 (845)
Q Consensus 187 ~~~~~~~a~~~L~~l~~~--~~~~~~---~~~~~~~l~~L~~ll~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (845)
+.++...+...=..+... .++... .......++.+++.+..++ .+. .-|-..+..+..-...+.
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~--~~~~~e~~~d~d~~~~f~--- 431 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDE--GEIVREFVKESDTIQLYK--- 431 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTT--SCEEECSSCCGGGHHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCC--ccHHHHhccchHHHHHHH---
Confidence 445544443332223221 111111 1122345555555444332 010 000000000000000000
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHh
Q psy12605 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPAL 333 (845)
Q Consensus 256 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~l 333 (845)
..+ +++..+.++.. .+..+.+ ++.+...+.+ .+...+++++.++|.++.+-......-.-..+++.|+.+
T Consensus 432 ~~R-d~L~~l~~l~~--~~~~~~~-----~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l 503 (1023)
T 4hat_C 432 SER-EVLVYLTHLNV--IDTEEIM-----ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1023)
T ss_dssp HHH-HHHHHHHHHCH--HHHHHHH-----HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhccCH--HHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHh
Confidence 011 33322222221 1222222 3344444443 578899999999999986643321111112467778887
Q ss_pred hcC-----CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH
Q psy12605 334 LTH-----PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ 408 (845)
Q Consensus 334 L~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (845)
+.+ ....++..++|+++..+.--.. ....++.++..+-.... ++++.++..||+++.+++..+. .
T Consensus 504 ~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~~~L~~vl~~L~~~l~-~~~~~v~~~A~~al~~l~~~c~---~ 573 (1023)
T 4hat_C 504 CVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HWNFLRTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCK---Y 573 (1023)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHT---H
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHH---H
Confidence 753 2344566788999986431111 12234444444433210 0367899999999999997432 2
Q ss_pred HHHH----------cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 409 EVVA----------AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 409 ~l~~----------~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
.+.. ...+..+......-++.-+..+..+++.+....+
T Consensus 574 ~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 574 HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 2221 1122233444444566777788888888887543
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.88 E-value=0.019 Score=70.82 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----C
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-----T 120 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-----~ 120 (845)
+..++ ..+.+++...+.+|-..|..+-... +....+..+|..+.++.+|..|+.+|.+.... +
T Consensus 18 l~~~l-~~~~~p~~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~ 85 (1049)
T 3m1i_C 18 LDQVV-STFYQGSGVQQKQAQEILTKFQDNP-----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1049)
T ss_dssp HHHHH-HHHHHCCHHHHHHHHHHHHHHHHST-----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHH-HHHhCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCC
Confidence 55666 5666777778888888887764332 24666778886677889999999999987642 2
Q ss_pred hhhHHHHHHcCChHHHHHhhCCC-----ChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSP-----HSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 194 (845)
++.+..+. ...+..+...-..+ ++.++.+.+.++..|+... ++. =.+.++.++..++. +...+..+
T Consensus 86 ~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-----Wp~ll~~L~~~~~~--~~~~~~~~ 157 (1049)
T 3m1i_C 86 NDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSSS--SVNVCENN 157 (1049)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHcc--ChHHHHHH
Confidence 33333333 23444444432222 3677888888888877431 100 01356777777762 33556677
Q ss_pred HHHHHHhhc
Q psy12605 195 TWVIVNLCR 203 (845)
Q Consensus 195 ~~~L~~l~~ 203 (845)
..+|..++.
T Consensus 158 l~~L~~l~e 166 (1049)
T 3m1i_C 158 MIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777764
No 91
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.84 E-value=0.0038 Score=75.67 Aligned_cols=325 Identities=14% Similarity=0.097 Sum_probs=167.8
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC--hhhHHHHHHcCC
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT--SAQTQEVVAAGA 132 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~--~~~~~~i~~~g~ 132 (845)
.+.++..+..++.++...++- .....+++.++++.+.++|. +++++..|+.+|..+.+.. ++.+..++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 347788888999999988763 34677778889999999993 3799999999999998643 333333333201
Q ss_pred hHHHHHhhC--CCChhHHHHHHHHHHHhcC------CCh-----hhHHHHHh--cCChhhHHhhhcCCCCHHHHHHHHHH
Q psy12605 133 VPLFLRLLM--SPHSNVCEQAVWALGNIIG------DGP-----QLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWV 197 (845)
Q Consensus 133 i~~L~~lL~--s~~~~v~~~a~~~L~nla~------~~~-----~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~~a~~~ 197 (845)
+...+..+. ..+.++.+..++.+..++. ..+ +.+..... .+.++.++.+..++ +.++...+...
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-YDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-SHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 112222222 3566666554444433321 111 11111111 24788888888887 44666666555
Q ss_pred HHHhhcC----CC--CCCC--hhHHhhHHHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 198 IVNLCRN----KD--PPPS--MSTIIELLPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 198 L~~l~~~----~~--~~~~--~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
+..+... .. .... .......++.+++-+.- ++.+... .--......+.. ++....+..+++..+
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~---~~d~ed~~~F~e-~Rk~l~~l~d~~~~l--- 428 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDD---DPDSEEEAEFQE-MRKKLKIFQDTINSI--- 428 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCC---CSSSSTHHHHHH-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcccccc---ccchhHHHHHHH-HHHHHHHHHHHHHhc---
Confidence 5554432 11 0111 12233444444444432 2211000 000000001111 111222222222222
Q ss_pred hcCChhh-HHHHHhcCchhhHHhhcc---CCchhhHHHHHHHHHHHhcCChhhHHHH-hcCCccchhhH----hhc----
Q psy12605 269 TDGGNDQ-IQMVIDSGVVPSLIPLLS---HKEVKVQTASLRAVGNIVTGTDEQTQVI-LNCDALSHFPA----LLT---- 335 (845)
Q Consensus 269 ~~~~~~~-~~~~~~~g~i~~Lv~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~i-~~~~~l~~L~~----lL~---- 335 (845)
.++. ...+. .-+.+.+...+. +.+...+++++.+|+.++.+-......+ -....+|.++. ++.
T Consensus 429 ---~~~~~l~~~~-~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~ 504 (980)
T 3ibv_A 429 ---DSSLFSSYMY-SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVC 504 (980)
T ss_dssp ---CHHHHHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTT
T ss_pred ---ChHHHHHHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCC
Confidence 1111 11110 011112223332 3457789999999999976532211111 01123444444 433
Q ss_pred -CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh--cccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 336 -HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK--VGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 336 -~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
..++.++..++++++..+.--.. ....++.++..+-+ +- ...++.++..|+.++.+++....
T Consensus 505 ~~~hp~V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl-~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 505 RHPHPLVQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGI-HNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp TCCCHHHHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTT-TCCCTTTHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccc-cCCChhHHHHHHHHHHHHHHHhh
Confidence 56789999999999987443211 34677887777766 21 11357899999999999987543
No 92
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.75 E-value=0.0075 Score=73.22 Aligned_cols=234 Identities=13% Similarity=0.120 Sum_probs=125.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG----- 119 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~----- 119 (845)
.++.++ ..+.+++.+.+.+|-..|..+-... + ....+..+|..+.++.+|..|+.+|.+....
T Consensus 17 ~Le~av-~~ly~p~~~~r~~A~~~L~~~q~sp-~----------aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L 84 (1023)
T 4hat_C 17 LLDQVV-STFYQGSGVQQKQAQEILTKFQDNP-D----------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1023)
T ss_dssp HHHHHH-HHHHHCCHHHHHHHHHHHHHHHHCT-T----------GGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHH-HHHhCCChHHHHHHHHHHHHHHcCc-c----------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 356677 5666666667888888887764433 2 3555667776667889999999999887642
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCC-----ChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSP-----HSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRN 193 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 193 (845)
+++.+..+ ....+..+.+.-.++ ..-++.+.+.++..++... |.. =.+.++.++.+++.+ ......
T Consensus 85 ~~e~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-----Wp~~l~dL~~~l~~~--~~~~~~ 156 (1023)
T 4hat_C 85 PNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSSSS--VNVCEN 156 (1023)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHTTTC--HHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-----chHHHHHHHHHhcCC--HHHHHH
Confidence 23333333 334555555543332 2455666777777765321 100 013466666666543 233444
Q ss_pred HHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh
Q psy12605 194 VTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN 273 (845)
Q Consensus 194 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 273 (845)
.+.+|..+++.- .. ....+.... . ...++......
T Consensus 157 ~L~iL~~L~EEV----------------~~-~~~~~l~~~---------r----------~~~lk~~l~~~--------- 191 (1023)
T 4hat_C 157 NMIVLKLLSEEV----------------FD-FSAEQMTQA---------K----------ALHLKNSMSKE--------- 191 (1023)
T ss_dssp HHHHHHHHHHHH----------------HT-SCTTTSCHH---------H----------HHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHH----------------HH-hhhccchHH---------H----------HHHHHHHHHHH---------
Confidence 555555444321 00 000100000 0 00000000000
Q ss_pred hhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhh-HhhcCCchhhHHHHHHHHHH
Q psy12605 274 DQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFP-ALLTHPKEKICKEAVWFLSN 351 (845)
Q Consensus 274 ~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~-~lL~~~~~~~~~~a~~~L~n 351 (845)
. ..+++.+...| ...++.+...++++++....--+ ...+.+...++.+. .++. ++..+..|+.+|..
T Consensus 192 --~-----~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~e 260 (1023)
T 4hat_C 192 --F-----EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTE 260 (1023)
T ss_dssp --H-----HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHH
T ss_pred --H-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 0 01122222233 13456777888888888765422 23456667778777 7775 46789999999999
Q ss_pred hhc
Q psy12605 352 ITA 354 (845)
Q Consensus 352 l~~ 354 (845)
+..
T Consensus 261 Iv~ 263 (1023)
T 4hat_C 261 VSN 263 (1023)
T ss_dssp HHT
T ss_pred HHc
Confidence 876
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.74 E-value=0.012 Score=72.54 Aligned_cols=220 Identities=10% Similarity=-0.002 Sum_probs=120.0
Q ss_pred CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHH
Q psy12605 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPAL 221 (845)
Q Consensus 142 s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 221 (845)
+++...|.+|-..|..+-.. + ++...+..++.++.+..+|..|+.+|.+..+..=..........+-..+
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~l 96 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFV 96 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHH
Confidence 44555677777777665422 2 3456666666555577889999999998776431111112222333333
Q ss_pred HhhcccCC--chhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhh
Q psy12605 222 NILIHHHD--TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299 (845)
Q Consensus 222 ~~ll~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 299 (845)
+.++.+.. +.. +..++ .++...+.+++.++..+-.. ...+.++.++..+. .++..
T Consensus 97 l~~l~~~~~~~~~--------~~~~~----------~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~-~~~~~ 153 (1049)
T 3m1i_C 97 VGMIISMCQDDEV--------FKTQK----------NLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSS-SSVNV 153 (1049)
T ss_dssp HHHHHHHHHCHHH--------HHHCH----------HHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHT-TCHHH
T ss_pred HHHHHhhCCcccc--------chhhH----------HHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHc-cChHH
Confidence 33333211 100 00001 16666677777666431110 13466777888876 45556
Q ss_pred HHHHHHHHHHHhcCCh---------hhH----HHHhcC--CccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 300 QTASLRAVGNIVTGTD---------EQT----QVILNC--DALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 300 ~~~al~~L~nl~~~~~---------~~~----~~i~~~--~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+..++.+|..++..-. ..+ ..+.+. .+++.+..++. ..+..++..++.++.+...-.+ ...+
T Consensus 154 ~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~ 231 (1049)
T 3m1i_C 154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYI 231 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHH
Confidence 6777777777763211 001 112211 12333344443 3456788889998887644322 1335
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
.+..+++.+++.+.. ++.++..|+.+|..++..
T Consensus 232 ~~~~ll~~l~~~~l~------~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 232 YETNILELLSTKFMT------SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HSSSHHHHHHTHHHH------SHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhCC------CHhHHHHHHHHHHHHHhC
Confidence 566677777643322 578999999999999864
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.46 E-value=0.0057 Score=72.51 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=107.2
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCCh---hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH-
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD---EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA- 358 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~---~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~- 358 (845)
+++..+...+.+.... +.|+.++..++.... ..-..++ +.++.++..+.++...+|..|-.++..+...-+.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777887666554 999999999985432 1212222 5788888888888899999888777776543322
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
.. ..++|.|+..|.+. ..+..+..|+.++..++...++.. ...-...+|.+...+.+..++|..+|..++
T Consensus 130 a~-----~~~~~~~~~~~~~~----~kw~~k~~~l~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~ 199 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVET----NKWQEKIAILAAFSAMVDAAKDQV-ALRMPELIPVLSETMWDTKKEVKAAATAAM 199 (986)
T ss_dssp GH-----HHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHhHHHH-HHhccchhcchHhhcccCcHHHHHHHHHHH
Confidence 22 34688999999775 369999999999999997554332 222335789999999999999999888888
Q ss_pred HHhhc
Q psy12605 439 GNIIG 443 (845)
Q Consensus 439 ~nl~~ 443 (845)
..++.
T Consensus 200 ~~~~~ 204 (986)
T 2iw3_A 200 TKATE 204 (986)
T ss_dssp HHHGG
T ss_pred HHHHh
Confidence 77764
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.44 E-value=0.0024 Score=65.00 Aligned_cols=184 Identities=9% Similarity=0.049 Sum_probs=132.9
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH-h
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI-D 365 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~-~ 365 (845)
.+++-|.+.+.+.+..++.-|..+...+......++..+|+..|+.+....+.+.+..++.++.++..+. +...-++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCC
Confidence 3445555667778889999999966677788899999999999999999999999999999999996653 3334444 4
Q ss_pred cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHH--------c--CChHHHHHhhC---CCCHHHHH
Q psy12605 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVA--------A--GAVPLFLRLLM---SPHSNVCE 432 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--------~--g~i~~Lv~lL~---~~~~~v~~ 432 (845)
..+|..+..++.+ ....+...|...|..++..++.....+.+ . ...+.|+.+|. +.+.+++.
T Consensus 201 ~~fI~~lyslv~s-----~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 201 SDTIQWLYTLCAS-----LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred HHHHHHHHHHHcC-----ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 6688888888885 47899999999999998766533322221 1 24788999997 78899999
Q ss_pred HHHHHHHHhhcCCh------HHHHHHHhCCChHHHHhccCCC-CChhHHHH
Q psy12605 433 QAVWALGNIIGDGP------QLRDYVINMGVVPPLLSFIKPD-IPISFLRN 476 (845)
Q Consensus 433 ~a~~~L~nl~~~~~------~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~ 476 (845)
.|+..|-.+....+ +..+.+.+.|.-..+.+.++.. .+.+++++
T Consensus 276 ~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 276 YTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 98887766554322 2334444556555666667654 33344443
No 96
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.36 E-value=0.0035 Score=63.87 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
.+..++..|..+-..+.+....++..+++..|+....+.+..++..++++++++-...+.....+-...++..+..++.+
T Consensus 134 ~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s 213 (339)
T 3dad_A 134 ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCAS 213 (339)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcC
Confidence 66677888887544667788889999999999999999999999999999999976544333333355688899999998
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhc----------CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh--
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDA----------GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS-- 404 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~-- 404 (845)
.+..+.+.|+..|..++..++.....+.++ .-.+.|+..|...+. .+.+++..|...+..+..+.+
T Consensus 214 ~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~--~D~elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 214 LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNG--ADPELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS--CCHHHHHHHHHHHHHHHHHCSSH
T ss_pred ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHhcCCCh
Confidence 889999999999999987766544443321 237789999973211 378888888777776655333
Q ss_pred H----hHHHHHHcCChHHHHHhhCCC--CHHHHH
Q psy12605 405 A----QTQEVVAAGAVPLFLRLLMSP--HSNVCE 432 (845)
Q Consensus 405 ~----~~~~l~~~g~i~~Lv~lL~~~--~~~v~~ 432 (845)
+ ....+-+.|.-..+.+.+... ++++++
T Consensus 292 d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 292 DSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 2 223333445555667767765 555554
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.17 E-value=0.037 Score=67.02 Aligned_cols=314 Identities=12% Similarity=0.119 Sum_probs=161.0
Q ss_pred HhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC---ChhHHHHHHHHHHHhcCC-Chh----hH
Q psy12605 95 ECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP---HSNVCEQAVWALGNIIGD-GPQ----LR 166 (845)
Q Consensus 95 ~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~---~~~v~~~a~~~L~nla~~-~~~----~r 166 (845)
..+..+.+++.|.+|-..|..+-.. + +++.....+|.++ ++.+|-.|+.+|.+.... +++ -+
T Consensus 14 ~~~~p~sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 14 AALDPSVGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 3454445788899998888888654 3 3666777778664 678899999888866531 122 23
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc-hhhHHHHHHHhhhCh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT-SVSIYLWLSIIEKNP 245 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~~~~ 245 (845)
..+.+ ..+..+...-....+..++...+.++..+....-+ . .....++.++.++...++ ......++.+..-+.
T Consensus 84 ~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 84 QMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-S---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-c---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 33322 23333333211123457888888888888775311 1 123567777777765443 211111222221111
Q ss_pred hhHHh--hhhhHHHHHHHHHHHHHhhcCChhhHHHHHh-------cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 246 QISKI--LVSKMKILVDTVWALSYLTDGGNDQIQMVID-------SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 246 ~~~~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++... ..+.+ .... ..+..+.+.+ .+++..|.....+.++.++..++++++.....-+
T Consensus 159 Ev~~~~~~~~~~-~~~r-----------~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~- 225 (980)
T 3ibv_A 159 EIADSLVLKTDV-QIQK-----------DNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN- 225 (980)
T ss_dssp HHCCCCSCCCHH-HHHH-----------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-
T ss_pred HHHhcccccCHH-HHhh-----------hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-
Confidence 10000 00000 0000 0000111111 1222233333334677889999999999876432
Q ss_pred hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH--HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA--QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAW 394 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~ 394 (845)
...+.+...++.+..++.+ ++++..|+.+|..+.....+ ....++.. + .+...+..-.....+.+.....+.
T Consensus 226 -~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~~~D~d~~~~la~ 299 (980)
T 3ibv_A 226 -INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQSTDPNFDEHVAK 299 (980)
T ss_dssp -HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC-----CCHHHHHHHHH
T ss_pred -HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcccccHHHHHHHHH
Confidence 2345556778888888875 78999999999998765432 22222221 1 112222111000135555544444
Q ss_pred HHHHHh------cCCh-----HhHHHH--HHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 395 ALTNIA------SGTS-----AQTQEV--VAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 395 ~L~~l~------~~~~-----~~~~~l--~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.+..++ ...+ +..... .-.+.++.++.++.+++.+|...+...+..+.
T Consensus 300 L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 300 LINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp HHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 443322 1111 111111 11257888888888888888877666655544
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.10 E-value=0.011 Score=70.11 Aligned_cols=299 Identities=14% Similarity=0.142 Sum_probs=191.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh--h
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA--Q 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~--~ 123 (845)
+++++ +.+...+...+..|+..+..++...... ..+..+++..|.+.+....++ ..|+.++..+|..... .
T Consensus 16 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 16 LEELF-QKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHH-HHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHH-hhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence 44566 5666655666778888888876643111 111236788888888422222 8888999999953311 2
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
....+ -+.+|.++..+.+....++..|-.++..+...- +.... ..+|.|+..+.....=..+..|+.++..|+
T Consensus 89 ~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 89 VEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp THHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 22211 268999999999888899998887777766433 22222 247888888865544467788999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC--ChhhHHHHH
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG--GNDQIQMVI 280 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~ 280 (845)
... +.+-......++|.+...+.+..++ +...|..++..++.. +.+.
T Consensus 163 ~~~-~~~~~~~~~~~~p~~~~~~~d~k~~-------------------------v~~~~~~~~~~~~~~~~n~d~----- 211 (986)
T 2iw3_A 163 DAA-KDQVALRMPELIPVLSETMWDTKKE-------------------------VKAAATAAMTKATETVDNKDI----- 211 (986)
T ss_dssp HHS-HHHHHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHGGGCCCTTT-----
T ss_pred HHh-HHHHHHhccchhcchHhhcccCcHH-------------------------HHHHHHHHHHHHHhcCCCcch-----
Confidence 755 3333334557788888888887777 777777777666542 2221
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC--hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC--C
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT--DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG--N 356 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~--~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~--~ 356 (845)
...+|.|+..+.+++. ...++..|+.-+.-. +.-.-.+ ++|.|..-|......+++.++-++-|+|.- +
T Consensus 212 -~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 212 -ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp -GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred -hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 2457888888877743 333444444332211 1111111 457777777878888999999999999874 3
Q ss_pred hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 357 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.....+ -..++|.|-+..... .+|++|..+..++..+.
T Consensus 285 ~~~~~~f-~~~l~p~~~~~~~~~----~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 285 PQVIAPF-LGKLLPGLKSNFATI----ADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHH-HTTTHHHHHHHTTTC----CSHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-hhhhhhHHHHHhhcc----CCHHHHHHHHHHHHHHH
Confidence 3333332 345666666665555 68999999888888774
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.04 E-value=0.18 Score=61.06 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=122.7
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
.+..++..+.+++.+.|.+|-..|..+-. +++ +...+..++..+.+..++..|+.+|.+.....=..-..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 45566667777778888888888877753 332 23444455655557788999999999877643111111
Q ss_pred hHHhhHHHHHHhhccc--CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 212 STIIELLPALNILIHH--HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
....+.-..++.++.. .++. .....+. ++...+.+++.++...-.. .-.+.++-++
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~--------~~e~~~~----------vinKLa~~La~I~k~~~P~----~Wp~fi~dLv 156 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPT--------CVEKEKV----------YIGKLNMILVQILKQEWPK----HWPTFISDIV 156 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGG--------GGTSCHH----------HHHHHHHHHHHHHHHHTTT----TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcc--------ccccchH----------HHHHHHHHHHHHHHHhChh----hccHHHHHHH
Confidence 2222222333333321 1110 0000011 4445555566555321000 0234555666
Q ss_pred hhccCCchhhHHHHHHHHHHHhcC---C--h----h----hHHHHhcCCccchhhHh----h-cCCchhhHHHHHHHHHH
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTG---T--D----E----QTQVILNCDALSHFPAL----L-THPKEKICKEAVWFLSN 351 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~---~--~----~----~~~~i~~~~~l~~L~~l----L-~~~~~~~~~~a~~~L~n 351 (845)
..+.. ++......+++|..++.. . . . .++.+.+. ++.++.+ + ...++.+...++.+|..
T Consensus 157 ~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~ 233 (1073)
T 3gjx_A 157 GASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLR 233 (1073)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 66543 344566677777777643 0 0 0 11222222 3444444 3 33567777778888887
Q ss_pred hhcCChHHHHHHHhcCChHHH-HHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 352 ITAGNQAQVQAVIDAGLLPKI-IANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 352 l~~~~~~~~~~l~~~~~i~~L-v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
...=-+ ...+++.++++.+ ..++. ++.++..|+.||+.+.+.
T Consensus 234 ~~sWI~--i~~i~~~~ll~~L~~~~L~-------~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 234 FLNWIP--LGYIFETKLISTLIYKFLN-------VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HTTTSC--THHHHSSSHHHHHHHHTSS-------SHHHHHHHHHHHHHHHHS
T ss_pred HHHhcC--HHHhccchHHHHHHHHhcC-------ChHHHHHHHHHHHHHHhc
Confidence 744322 2557778888877 45552 568999999999998764
No 100
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.36 E-value=0.0037 Score=62.01 Aligned_cols=186 Identities=12% Similarity=0.070 Sum_probs=122.2
Q ss_pred HhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCC
Q psy12605 95 ECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV 174 (845)
Q Consensus 95 ~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~ 174 (845)
+++ .++++.+|..++..| ....|..+++++++.++..++..| .
T Consensus 57 ~ll-~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------- 99 (244)
T 1lrv_A 57 QYL-ADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------- 99 (244)
T ss_dssp GGT-TCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------
T ss_pred HHh-cCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------
Confidence 444 567888988887743 133467788899999999988642 1
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 175 VPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 175 i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
.+.+..+++.+ +..++..++..+ . .+.+..++.++++.
T Consensus 100 ~~~L~~ll~D~-d~~VR~~aA~~l------~------------~~~L~~L~~D~d~~----------------------- 137 (244)
T 1lrv_A 100 REQLSALMFDE-DREVRITVADRL------P------------LEQLEQMAADRDYL----------------------- 137 (244)
T ss_dssp SGGGGGTTTCS-CHHHHHHHHHHS------C------------TGGGGGGTTCSSHH-----------------------
T ss_pred HHHHHHHHcCC-CHHHHHHHHHhC------C------------HHHHHHHHcCCCHH-----------------------
Confidence 13455666655 557887777632 1 01355666677777
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh
Q psy12605 255 MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL 334 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL 334 (845)
++..++..+ ..+.+..+++++++.|+..++..+ .-+.+..++
T Consensus 138 --VR~~aA~~l------------------~~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll 179 (244)
T 1lrv_A 138 --VRAYVVQRI------------------PPGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMT 179 (244)
T ss_dssp --HHHHHHHHS------------------CGGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGST
T ss_pred --HHHHHHHhc------------------CHHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHH
Confidence 666665421 123455677888999998887741 124566777
Q ss_pred cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC
Q psy12605 335 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 335 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 414 (845)
.+++..+|..+...+ ..+.|..++.+ .++.|+..++..+.
T Consensus 180 ~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D-----~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL------------------RGDDLLELLHD-----PDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp TCSSHHHHHHHHHHC------------------CGGGGGGGGGC-----SSHHHHHHHHHHSC-----------------
T ss_pred cCCCHHHHHHHHHhC------------------CHHHHHHHHcC-----CCHHHHHHHHHcCC-----------------
Confidence 889999998887642 12456666666 47899988887642
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
.+.|..+ .++++.|+..+...|+
T Consensus 220 -~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 -LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3556666 8889999988876543
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.13 Score=52.44 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=120.1
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccH-HHHH--hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh----hH
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPI-EALI--HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA----QT 124 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~-~~i~--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~----~~ 124 (845)
+.|.|.+...|..|+..+.+++........ +... -....+.+-..+ .+.|..++..++.+|..++..... ..
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 688999999999999999998875432111 1111 124566677788 577889999999999988753211 11
Q ss_pred -HHHHHcCChHHHHH-hhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 125 -QEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 125 -~~i~~~g~i~~L~~-lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
....-...+|.|+. .|.++...++..|..++..++...... .. .++.++..+.+.++ .++..++..|.++.
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knp-kv~~~~l~~l~~~l 167 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLP-KLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCH-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCH-HHHHHHHHHHHHHH
Confidence 11112346777775 588888999999998887776432111 11 24556666777654 67787777777766
Q ss_pred cCCCCC--CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 203 RNKDPP--PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 203 ~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
...... ........+++.+..++.+.|+. ++..|..++..+-.
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~-------------------------VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRN-------------------------VRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHH-------------------------HHHHHHHHHHHHHT
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHH-------------------------HHHHHHHHHHHHHH
Confidence 542211 11223345666777888899998 88888888876654
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.01 E-value=0.023 Score=61.17 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=157.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccH-HHHHhcCCHHHHHHhhccC------CC---hhHHHHHHHHHH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERS------DR---PNLQFEAAWALT 114 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~-~~i~~~g~i~~Lv~lL~~~------~~---~~i~~~a~~~L~ 114 (845)
-.+.++ ..|-++..+.|..|+..||.++........ ....+.++.-+|+.+|.-+ ++ ..||..|+++|+
T Consensus 175 fcE~L~-~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQIS-DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHH-HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHH-HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 566777 788899999999999999999875421000 0001114566666665322 11 258999999999
Q ss_pred HHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHH
Q psy12605 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194 (845)
Q Consensus 115 ~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 194 (845)
.+ .+-++. ..++..|+..+..+..+++-.++-.|..+. + -..+ -.++++.++..|+.. +++++..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-D--LL~~---Ld~Vv~aVL~GL~D~-DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK-E--FVED---KDGLCRKLVSLLSSP-DEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-G--GCCC---HHHHHHHHHHHTTCS-SHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH-H--HHHH---HHHHHHHHHhhcCCc-ccHHHHHH
Confidence 99 543332 345666666668888999999999999982 1 1111 123566777777766 67999999
Q ss_pred HHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc-hhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh
Q psy12605 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT-SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN 273 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 273 (845)
+.+|.-++. + .....++..+...+.+.|. .. -.......|+.+...+.
T Consensus 320 AetLiPIA~---p----~~l~~LL~iLWd~L~~LDDLSA------------------------STgSVMdLLAkL~s~p~ 368 (800)
T 3oc3_A 320 AELLCHFPI---T----DSLDLVLEKCWKNIESEELISV------------------------SKTSNLSLLTKIYRENP 368 (800)
T ss_dssp HHHHTTSCC---S----STHHHHHHHHHHHHHTCCSCCT------------------------THHHHHHHHHHHHHHCT
T ss_pred HHHhhhhcc---h----hhHHHHHHHHHHHhhhhcccch------------------------hhHHHHHHHHHHHcCCc
Confidence 999998881 1 2356777888877765432 21 11122223333332222
Q ss_pred hhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh-hHhhcCCchhhHHHHHHHHH
Q psy12605 274 DQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF-PALLTHPKEKICKEAVWFLS 350 (845)
Q Consensus 274 ~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L-~~lL~~~~~~~~~~a~~~L~ 350 (845)
. .......+|.|.+++.++-.+||.++++++..+. ... ++..+ -++|-..+++++..+..+..
T Consensus 369 ~---a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 369 E---LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp T---CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred c---cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1113478999999999999999999999998886 111 22222 23445567788877766664
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.00 E-value=0.17 Score=50.46 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=107.6
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc---CCCCHHHHHHHHHHHHHhhc---CCCCC
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK---PDIPISFLRNVTWVIVNLCR---NKDPP 208 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~---~~~~~~~~~~a~~~L~~l~~---~~~~~ 208 (845)
.+...|-+.+..-+..|+..|.....+.+ +.+.. .++.++..+. .+++..+...+..+|..+.. ..+..
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33444445555556666666655443222 22221 1233333221 12244566666666655432 22233
Q ss_pred CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhH
Q psy12605 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 288 (845)
-......-.+|.|+.-+.+.... ++..+-..+..+... .--..+++.+
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~-------------------------vR~~~r~il~~l~~v-------~~~~~v~~~l 172 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDN-------------------------MRTSVRDIVNVLSDV-------VGPLKMTPML 172 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHH-------------------------HHHHHHHHHHHHHHH-------HCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHH-------------------------HHHHHHHHHHHHHHH-------CCHHHHHHHH
Confidence 33334567889998888776666 555555555444321 1122356778
Q ss_pred HhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc---chhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL---SHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 289 v~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l---~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
+..+.+.+..++..++..++.+....+.. ...++ +.+..++.+.|..+|..|..++..+-.
T Consensus 173 ~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 173 LDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 88889999999999999999997543222 23478 999999999999999999999987643
No 104
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.77 E-value=0.78 Score=44.58 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhh-------ccCCc-----hhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPL-------LSHKE-----VKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~l-------L~~~~-----~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
.++.|+..|+.=-+.-++..-.+... |.+..|++= +..+. ..-...|+..+..++++ ++.+..+++
T Consensus 17 ~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~Fl~ 95 (268)
T 2fv2_A 17 TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSAFLA 95 (268)
T ss_dssp THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHHHHH
T ss_pred hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhHHHH
Confidence 45566655554444334444444444 544444322 22221 22345777788888875 666888999
Q ss_pred CCccchhhHhhcCCc-----hhhHHHHHHHHHHhhc-CChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 324 CDALSHFPALLTHPK-----EKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 324 ~~~l~~L~~lL~~~~-----~~~~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
+++.-.|..+|+..+ +-+|-.++++++.+.. ++++.+..+++.+++|.+++.+..+ +.-.|..|..++.
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-----selSKtvAtfIlq 170 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-----SELSKTVATFILQ 170 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-----CHHHHHHHHHHHH
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-----cHHHHHHHHHHHH
Confidence 988888888885432 6789999999999765 4567778889999999999999986 7788899999999
Q ss_pred HHhcCChHhHHHHHH--------cCChH-HHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 398 NIASGTSAQTQEVVA--------AGAVP-LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 398 ~l~~~~~~~~~~l~~--------~g~i~-~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 453 (845)
.+..++... .+++. ...+. .+..+.+.+++.+.+..+++--.++.+ +..|+.+.
T Consensus 171 KIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL~ 233 (268)
T 2fv2_A 171 KILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREALR 233 (268)
T ss_dssp HHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 987654321 11111 11222 233445677888888888888888754 45555554
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.68 E-value=1.3 Score=47.19 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=81.6
Q ss_pred CChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHh
Q psy12605 101 DRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180 (845)
Q Consensus 101 ~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ 180 (845)
.++..++.|+..+...-+.-++.... ++..+++|+.+.+..+|.+|++.|..+|.+ +....+ .+.|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV-----ADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHHHH
Confidence 46789999999999998887887765 678899999999999999999999999987 343333 567889
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 181 FIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 181 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
+|+.+.+ .-...+-++|..+.+.+ ..+.+..+...+...++.
T Consensus 108 lLqtdd~-~E~~~V~~sL~sllk~D--------pk~tl~~lf~~i~~~~e~ 149 (507)
T 3u0r_A 108 LLQTDDS-AEFNLVNNALLSIFKMD--------AKGTLGGLFSQILQGEDI 149 (507)
T ss_dssp HTTCCCH-HHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHSCHH
T ss_pred HHhccch-HHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHcccchH
Confidence 9987643 45556666777776654 245555555555445555
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.58 E-value=0.22 Score=49.55 Aligned_cols=173 Identities=10% Similarity=0.088 Sum_probs=106.8
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcC----CChhhHHHHHhcCCh
Q psy12605 100 SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG----DGPQLRDYVINMGVV 175 (845)
Q Consensus 100 ~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~----~~~~~r~~i~~~g~i 175 (845)
+.+..-+..|+..|......+++......+. .++.+.--+.+++..+...++..|..+.. .+....+.-. .-.+
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~l 134 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFV 134 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHH
Confidence 4455666666666666543333222111110 12222223346688888888887777641 1111111000 1257
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhH
Q psy12605 176 PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKM 255 (845)
Q Consensus 176 ~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (845)
|.|+.-+.+. ...+|..+-.++..++.-. ......+.+...+.+.+..
T Consensus 135 P~LveKlGd~-k~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksKN~R------------------------ 182 (266)
T 2of3_A 135 PYLLLKTGEA-KDNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSKNAR------------------------ 182 (266)
T ss_dssp HHHHHGGGCS-SHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCSCHH------------------------
T ss_pred HHHHHHhCCC-hHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccCCHH------------------------
Confidence 8888888776 4578888887777776422 1345777788888887777
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCch---hhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVV---PSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 256 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i---~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
++..++..+.++-....-. ....+ +.+..++.+++..||.+|+.++..+-.
T Consensus 183 -~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 183 -QRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp -HHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 8888888887765321111 23467 899999999999999999999997754
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.36 Score=48.98 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=117.9
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh--HHHHH-hcC-ChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL--RDYVI-NMG-VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~--r~~i~-~~g-~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
-+| |-.-|.+.+...|..|+..|..+....+.. .+... ..+ ..+.+-..+. +.+..++..++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhh
Confidence 345 567788999999999999988876443211 11111 112 2333445554 44678899999999988875532
Q ss_pred CCC-----hhHHhhHHHHHHh-hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 208 PPS-----MSTIIELLPALNI-LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 208 ~~~-----~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
... ......++|.|+. .+.+..+. ++..+..++..+....... .
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~-------------------------~~~~a~~~l~~~~~~~~~~-~---- 138 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRAT-------------------------TKTQSMSCILSLCGLDTSI-T---- 138 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHH-------------------------HHHHHHHHHHHHHHTSSSS-H----
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHH-------------------------HHHHHHHHHHHHHHhcCcH-H----
Confidence 221 1123456666664 35566665 7777777776555432211 1
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcC--Chh-hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTG--TDE-QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~--~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
.+++.+...+.+.++.++..++..|..+... ... .....+. .+++.+..++.+.++.+|..|..++..+..
T Consensus 139 -~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 139 -QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp -HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1245677788999999999999999988642 111 0111111 356778888999999999999999988744
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.37 E-value=7.1 Score=47.28 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHH-HhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLV-ECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
+.+++....++.+++.+++= .....+++.++++.|+ .+| ++++.+..|+.+|..+.+.
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L---~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFL---NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhc---CChHHHHHHHHHHHHHHhc
Confidence 45677777888999888663 2457788899999884 666 4678999999999998864
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.10 E-value=0.27 Score=53.16 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=130.5
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHc--CChHHHHHhh--CC--------CChhHHHHHHHHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA--GAVPLFLRLL--MS--------PHSNVCEQAVWALG 156 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~--g~i~~L~~lL--~s--------~~~~v~~~a~~~L~ 156 (845)
+...|+.-| .++..++|..|+.+|+.+.+............ ...-.|+-+| +. ---.|||.|+.+||
T Consensus 175 fcE~L~~DL-Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNL-LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 455566555 46778999999999999875322111000111 1222222222 11 12368999999999
Q ss_pred HhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHH
Q psy12605 157 NIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~ 236 (845)
.+ ..-+.- ..++..++..+..+ .=+++..++-.|..+ .+ -... ..+.++.+...+.+.|.+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL-~D--LL~~---Ld~Vv~aVL~GL~D~DDD----- 314 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL-KE--FVED---KDGLCRKLVSLLSSPDED----- 314 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT-GG--GCCC---HHHHHHHHHHHTTCSSHH-----
T ss_pred HH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH-HH--HHHH---HHHHHHHHHhhcCCcccH-----
Confidence 98 554432 23344455444444 335666677777777 11 1111 577888888999998888
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCC
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~ 314 (845)
++..|+.+|.-++ .++.... ++..+...|.+ +-.......+..|+.++...
T Consensus 315 --------------------VRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p 367 (800)
T 3oc3_A 315 --------------------IKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYREN 367 (800)
T ss_dssp --------------------HHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC
Confidence 8888888888777 2222222 23344444432 12234455677777777654
Q ss_pred hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 315 DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
.. ...+...+|.|..++.+.-..+|..++.+|..+.
T Consensus 368 ~~---a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 368 PE---LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TT---CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred cc---cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 21 1223378899999999999999999999998875
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.78 E-value=0.014 Score=57.80 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEV 127 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i 127 (845)
+++..++.++++.++..|+..+ . ...|..++ .++++.+|..++..|.
T Consensus 53 ~l~~~ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~-~D~~~~VR~~aA~~L~------------- 99 (244)
T 1lrv_A 53 HLAVQYLADPFWERRAIAVRYS------P-------------VEALTPLI-RDSDEVVRRAVAYRLP------------- 99 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS------C-------------GGGGGGGT-TCSSHHHHHHHHTTSC-------------
T ss_pred HHHHHHhcCCCHHHHHHHHHhC------C-------------HHHHHHHc-cCcCHHHHHHHHHHCC-------------
Confidence 3332456788888888887743 1 12345666 4677788888775421
Q ss_pred HHcCChHHHHHhhCCCChhHHHHHHHH
Q psy12605 128 VAAGAVPLFLRLLMSPHSNVCEQAVWA 154 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~~~~v~~~a~~~ 154 (845)
.+.|..++++++..++..++..
T Consensus 100 -----~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 100 -----REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp -----SGGGGGTTTCSCHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCHHHHHHHHHh
Confidence 1356677777888888777763
No 111
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.09 E-value=0.41 Score=46.51 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=101.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHh
Q psy12605 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRL 422 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~l 422 (845)
+|+..|..++ ..++.+..++++++.--|..+|........-..+|..+.+.++.++. ++++....+.+.+.+|..++.
T Consensus 75 naLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 75 NALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 3444445555 45777788999998888888887654322235788899999999986 667888899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 423 LMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 423 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
++.+++--+.-|...+..|..+.....-..... .++..++.-+..+.+..+.++++++...|+.+.
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 999999999999999999887654332221111 133344444445555677777777777766544
No 112
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.82 E-value=2.7 Score=42.74 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=136.4
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh----hHHHHHhc-CChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ----LRDYVINM-GVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~----~r~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
..+...+.+..|+..|..=+-+.|..+..+..++-..... ..+.+... .++..|+..-.+ .++--.+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~---~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES---PEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS---TTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc---chhHhHHHHHHH
Confidence 3455567899999999888888899999988888765432 12222221 122222222221 133344444444
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
...++.. ........+.+-.+.+.+..++ .++..+|..++..+-.........+
T Consensus 149 ecir~e~-la~~iL~~~~f~~fF~yv~~~~-------------------------FdiasDAf~TfkelLt~Hk~lvaef 202 (341)
T 1upk_A 149 ECIRHEP-LAKIILWSEQFYDFFRYVEMST-------------------------FDIASDAFATFKDLLTRHKLLSAEF 202 (341)
T ss_dssp HHHTSHH-HHHHHHHSGGGGHHHHHTTCSS-------------------------HHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHhHH-HHHHHhccHHHHHHHHHhcCCC-------------------------chHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444331 1111111122222233333332 3388888888877644433333333
Q ss_pred Hhc---CchhhHHhhccCCchhhHHHHHHHHHHHhcCCh--hhH-HHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 280 IDS---GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD--EQT-QVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 280 ~~~---g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
... .++...-.+|.+++--++..+++.||.+..+.. ... ..+-+..-+..++.+|.+.+..++-+|..++.-.+
T Consensus 203 L~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 203 LEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 333 356677788899998899999999999987632 222 33334467889999999999999999998887766
Q ss_pred cC---ChHHHHHHHhcCChHHHHHHhhhccccc-CChhHHHHHHHHHHHH
Q psy12605 354 AG---NQAQVQAVIDAGLLPKIIANLQKVGRIV-LRPNLQFEAAWALTNI 399 (845)
Q Consensus 354 ~~---~~~~~~~l~~~~~i~~Lv~lL~~~~~~~-~~~~v~~~a~~~L~~l 399 (845)
+. +++....++.. =..|++++.+-.... ++.....+-...+..|
T Consensus 283 ANP~K~~~I~~IL~~N--r~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I 330 (341)
T 1upk_A 283 ANPNKTQPILDILLKN--QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQI 330 (341)
T ss_dssp HCSSCCHHHHHHHHHT--HHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHH
T ss_pred eCCCCChHHHHHHHHH--HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Confidence 54 22333333332 245555555432111 2334444444444443
No 113
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.75 E-value=4.4 Score=40.94 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh-c
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL-T 335 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL-~ 335 (845)
+...+...| ++--++++.+.-++..+++..+...+.-++.++..+..+.|...+... .....- -...+|.++..+ -
T Consensus 259 VvtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-sL~~t~-L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-ALAKTP-LENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG-GGGTSC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH-HHhhcc-ccccchHHHHHhcc
Confidence 444555544 444577888888999999999999999999999999999998875332 111110 114677777777 4
Q ss_pred CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhccccc--CChhHHHHHHHHHHHH
Q psy12605 336 HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIV--LRPNLQFEAAWALTNI 399 (845)
Q Consensus 336 ~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~--~~~~v~~~a~~~L~~l 399 (845)
++++++.....+.|+|+.++.....+.-+..+.++.|...+....+.. .+..-+..||.+++|-
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 678899999999999999999888888899999999998887653221 1233455567666664
No 114
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.15 E-value=2.1 Score=45.34 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc----------CCChhHHHHHHHHHH
Q psy12605 46 LDMLVVEAARKDN-PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER----------SDRPNLQFEAAWALT 114 (845)
Q Consensus 46 i~~lv~~~l~~~~-~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~i~~~a~~~L~ 114 (845)
-..++ ..|.++- .......+..|+..+..++-.-++.++ .+++..|+.+|.. ..+...+..+..||.
T Consensus 68 P~~yi-~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLk 145 (383)
T 3eg5_B 68 AMMYI-QELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK 145 (383)
T ss_dssp HHHHH-HHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 44566 6666653 233445788888888776544457776 6678888888842 123478889999999
Q ss_pred HHhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh-hh-HHHH----------HhcCChhhHHhh
Q psy12605 115 NIASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-QL-RDYV----------INMGVVPPLLSF 181 (845)
Q Consensus 115 ~la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~-~~-r~~i----------~~~g~i~~Lv~l 181 (845)
.+.. +......++. .+++..|...|.++.+.++..++..|..+|.-+. .+ ...+ .+..-+..++..
T Consensus 146 almN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~ 224 (383)
T 3eg5_B 146 AFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 224 (383)
T ss_dssp HHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred HHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 9974 4556666665 6789999999999999999999999999886543 22 2222 233457778888
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
+......+.+..++..+-.+..+.
T Consensus 225 L~~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 225 LKSGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC
Confidence 877656677777777776676655
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=92.95 E-value=1.8 Score=41.67 Aligned_cols=142 Identities=12% Similarity=0.009 Sum_probs=96.3
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-hhCCCChhHHHHHHHHHHHhcC-CChhhHHHHH
Q psy12605 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIG-DGPQLRDYVI 170 (845)
Q Consensus 93 Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~-lL~s~~~~v~~~a~~~L~nla~-~~~~~r~~i~ 170 (845)
+..-|-.++..++|..|+..|+.+ .... ..++.+.. +-..++-.|++.+..+++.++. ..++.
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 344443566679999999988887 3211 24555555 5556778999999999999984 33321
Q ss_pred hcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHh
Q psy12605 171 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250 (845)
Q Consensus 171 ~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (845)
.++.+.....++ +..+|+.|+..+.-.+..... ......++|.+..+..+++.=
T Consensus 140 ---~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~y------------------- 193 (240)
T 3l9t_A 140 ---ALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEY------------------- 193 (240)
T ss_dssp ---THHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHH-------------------
T ss_pred ---HHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHH-------------------
Confidence 456677777766 568999988776555543211 122345677776666555544
Q ss_pred hhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 251 LVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 251 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
|+....|.|..++..+++.+..+++
T Consensus 194 ------VrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 194 ------VRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 8999999999999998887666544
No 116
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.84 E-value=1.6 Score=42.73 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=79.4
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CChhHHHHHHHHHHHH
Q psy12605 48 MLVVEAARKDN-PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRPNLQFEAAWALTNI 116 (845)
Q Consensus 48 ~lv~~~l~~~~-~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~l 116 (845)
.++ ..|.+.. ++...+-+..|+..+..++-.-++.+ ..+++..|+.+|... .+...+..+..||..+
T Consensus 4 ~yi-~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal 81 (233)
T 2f31_A 4 MYI-QELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 81 (233)
T ss_dssp HHH-HHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 455 5565543 22234457777777776644445666 567888888888531 1346788999999999
Q ss_pred hcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 117 ASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 117 a~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.. +......++. .+++..|...|.++++.++..++..|..+|..+
T Consensus 82 mn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 82 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp TS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred hC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 74 4555666665 578999999999999999999999999888654
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.48 E-value=8.9 Score=37.79 Aligned_cols=102 Identities=8% Similarity=0.042 Sum_probs=73.7
Q ss_pred cHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~-~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+-+++ +.... ++ ..+...+...+.++-..+...... +++.++++- .+.+.++|+..+..+...+...++.
T Consensus 16 ~v~~ll-n~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~k~~l 87 (257)
T 3gs3_A 16 KVVDWC-NELVIASP-STKCELLAKVQETVLGSCAELAEE-----FLESVLSLA-HDSNMEVRKQVVAFVEQVCKVKVEL 87 (257)
T ss_dssp HHHHHH-HHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHH-HHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 33333 44 688889999999776543333344 478888875 5678899999999999998655544
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
... .++.|..+|++.++.+...++.+..++-
T Consensus 88 ~~~-----~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 88 LPH-----VINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp HHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 433 6778889999889999998888877763
No 118
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.77 E-value=16 Score=39.13 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=77.3
Q ss_pred ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHh
Q psy12605 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 223 (845)
Q Consensus 144 ~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 223 (845)
++..+.-|+..+.....+-|+.++. +|..+++++..+ +..+|..|+.-|..+|++. .......+|++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~~-------~i~kiaDvL~Q 107 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDE-DVSIRRQAIKELPQFATGE-------NLPRVADILTQ 107 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCS-SHHHHHHHHHHGGGGCCTT-------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhhHHHhhhh-------hhhhHHHHHHH
Confidence 4566666666666666666665554 345566666555 5679999999999999871 26788889999
Q ss_pred hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHH
Q psy12605 224 LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303 (845)
Q Consensus 224 ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 303 (845)
++..+++. -...+-++|..+-..++. +.+..+...+.++++.+|+.+
T Consensus 108 lLqtdd~~-------------------------E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~ 154 (507)
T 3u0r_A 108 LLQTDDSA-------------------------EFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERA 154 (507)
T ss_dssp HTTCCCHH-------------------------HHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHH
T ss_pred HHhccchH-------------------------HHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHH
Confidence 99987766 333444444444332221 223333334434567788888
Q ss_pred HHHHHHHh
Q psy12605 304 LRAVGNIV 311 (845)
Q Consensus 304 l~~L~nl~ 311 (845)
+..|..-.
T Consensus 155 lkFi~~kl 162 (507)
T 3u0r_A 155 IKFLSTKL 162 (507)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 88876644
No 119
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.23 E-value=14 Score=37.48 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=100.0
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChH----HHHHhhCC-CChhHHHHHHHHHHHhcCCChh
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP----LFLRLLMS-PHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~----~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~ 164 (845)
+..+.++++.. .+.+.-++..|+-++.+ +.....+.+.+.-. .+...+.+ ..+..+--++++++|+... +.
T Consensus 105 l~~l~kil~WP--~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~ 180 (304)
T 3ebb_A 105 LQILWKAINCP--EDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QA 180 (304)
T ss_dssp HHHHHHHHTSC--TTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HH
T ss_pred HHHHHHHHcCC--HHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-ch
Confidence 56666766332 24566777777776653 55554444432222 33344433 3566788999999999854 56
Q ss_pred hHHHHHhc--CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHHh
Q psy12605 165 LRDYVINM--GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSII 241 (845)
Q Consensus 165 ~r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~ 241 (845)
.++.+... .+++.+...+..+ +..++..++.++.|++-.............++..+..++.. .|++
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~E---------- 249 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLE---------- 249 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHH----------
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHH----------
Confidence 77776642 2344444444433 56888889999999877431112223334455555555543 3444
Q ss_pred hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
....++-+|.++...+.+..+....-|+-..+-.+.+
T Consensus 250 ---------------alyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 250 ---------------ATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred ---------------HHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence 7777888888887666554444333344444444443
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.17 E-value=14 Score=37.51 Aligned_cols=207 Identities=10% Similarity=0.094 Sum_probs=139.8
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh----hHHHHHh-cCchhhHH
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND----QIQMVID-SGVVPSLI 289 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~-~g~i~~Lv 289 (845)
.+.+..|+..+..-+-+ .+.++.....++.+.... ....+.+ ..++..|+
T Consensus 77 ~dll~~Li~~l~~L~fE-------------------------~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~ 131 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFE-------------------------GKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLL 131 (341)
T ss_dssp HSHHHHHHHTGGGSCHH-------------------------HHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHH
T ss_pred hCHHHHHHHhcccCCch-------------------------hhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHH
Confidence 45666666666655555 667777777776654322 2233322 12223333
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC--
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG-- 367 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~-- 367 (845)
..- .++++...+-..|+.+... +.....+...+.+-.+.+.+..++=++...|..++..+..........++..+
T Consensus 132 ~gY--e~~diAl~~G~mLRecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd 208 (341)
T 1upk_A 132 KGY--ESPEIALNCGIMLRECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYD 208 (341)
T ss_dssp HGG--GSTTTHHHHHHHHHHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHH
T ss_pred Hhh--ccchhHhHHHHHHHHHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHH
Confidence 332 3455666666667766654 66667777777777788888888889999999999998776666666665533
Q ss_pred -ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh--H-hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 368 -LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS--A-QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 368 -~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~--~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+....-+++.+ .+.-+++.+...|+.+..... . ..+++.+..-+..++.+|.+.+..++..|..++--+..
T Consensus 209 ~Ff~~y~~Ll~S-----~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 209 RFFSEYEKLLHS-----ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 56667777766 489999999999999886533 2 34445555668889999999999999999999887776
Q ss_pred C---ChHHHHHHHh
Q psy12605 444 D---GPQLRDYVIN 454 (845)
Q Consensus 444 ~---~~~~~~~l~~ 454 (845)
+ ++.+.+.+..
T Consensus 284 NP~K~~~I~~IL~~ 297 (341)
T 1upk_A 284 NPNKTQPILDILLK 297 (341)
T ss_dssp CSSCCHHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 3 4555555553
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.44 E-value=3.6 Score=40.12 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=95.6
Q ss_pred CChhhHHHHHhcCchhhHHhhccC-----------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 271 GGNDQIQMVIDSGVVPSLIPLLSH-----------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 271 ~~~~~~~~~~~~g~i~~Lv~lL~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
.+.+.++.+ ..+++..|+..|.. .+...+..+++||..+..........+....++..+...+.++++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 344455555 45666677777621 134678889999999865544444444455788899999999999
Q ss_pred hhHHHHHHHHHHhhcCCh-HH-HHHH----------HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh---
Q psy12605 340 KICKEAVWFLSNITAGNQ-AQ-VQAV----------IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS--- 404 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~-~~-~~~l----------~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~--- 404 (845)
.+|..++..|.-+|.... .. ...+ -+..-...+++.+.+. .+.+.+..+...+-.+..+.+
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~----~~~e~~~~~m~lIN~li~~~~dl~ 186 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG----TSIALKVGCLQLINALITPAEELD 186 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT----SCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC----ChHHHHHHHHHHHHHHHCCCCCHH
Confidence 999999988887765432 11 1222 1223456677776543 345555554444444554433
Q ss_pred ---HhHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 405 ---AQTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 405 ---~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
..+..+...|..+.+-.+=...++++..
T Consensus 187 ~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 187 FRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 2355666777777766665555655544
No 122
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=89.67 E-value=3 Score=42.43 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=77.0
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcC--CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHH
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNC--DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 372 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 372 (845)
..+..+..++++++|+... +..++.+... .+++.+...+.+.+..++..++..+.|++.........-....++..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 3456789999999999766 3344544432 244455555556788999999999999865311100000011133444
Q ss_pred HHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 373 IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 373 v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
..++... .+++....+..+|++++..+.+........|....+-++...
T Consensus 239 ~~il~~~----~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 239 STILEVV----QDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhcc----CCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 4555443 588999999999999998766544444444444444444444
No 123
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=89.10 E-value=8.9 Score=47.52 Aligned_cols=303 Identities=11% Similarity=0.080 Sum_probs=154.7
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhh--CCCChhHHHHHHHHHHHhcCC-----Chh
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGD-----GPQ 164 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~nla~~-----~~~ 164 (845)
.|-..+..+.++..|.+|-..|..+-.. + +++..+...| .+.+..+|..|+.+|.+.... +++
T Consensus 16 ~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 16 AVTVMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 3334443234567788888888877542 1 2445555544 345788999999999887532 344
Q ss_pred hHHHHHhcCChhhHHhhhcCC--CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhh
Q psy12605 165 LRDYVINMGVVPPLLSFIKPD--IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIE 242 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~ 242 (845)
.+..+.+ ..+..+....... .+..++..++.+++.+.+..-+ .. ....++.+++++.. ++.
T Consensus 86 ~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~---Wp~ll~~L~~~~~~-~~~----------- 148 (1204)
T 3a6p_A 86 EKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QH---WPDMLIELDTLSKQ-GET----------- 148 (1204)
T ss_dssp HHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TT---CTTHHHHHHHHHHT-CHH-----------
T ss_pred HHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-cc---chHHHHHHHHHhcC-CHH-----------
Confidence 4444433 2333333321111 3567888889999998876422 22 34677888877765 333
Q ss_pred hChhhHHhhhhhHHHHHHHHHHHHHhhcC-------ChhhH----HHHHhc--CchhhHHhhccC---------------
Q psy12605 243 KNPQISKILVSKMKILVDTVWALSYLTDG-------GNDQI----QMVIDS--GVVPSLIPLLSH--------------- 294 (845)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-------~~~~~----~~~~~~--g~i~~Lv~lL~~--------------- 294 (845)
....++.+|..+.+. ..... +.+.+. .+++.+...+..
T Consensus 149 --------------~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~ 214 (1204)
T 3a6p_A 149 --------------QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQE 214 (1204)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTH
T ss_pred --------------HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 122222222222110 00000 011100 112222222211
Q ss_pred ----CchhhHHHHHHHHHHHhcCChhhHHHHhcCC--ccchhhHhhcCCchhhHHHHHHHHHHhhcCC--hHHHHHHHh-
Q psy12605 295 ----KEVKVQTASLRAVGNIVTGTDEQTQVILNCD--ALSHFPALLTHPKEKICKEAVWFLSNITAGN--QAQVQAVID- 365 (845)
Q Consensus 295 ----~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~--~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~--~~~~~~l~~- 365 (845)
++..++..+++++.+...--+. ..+.+.. .++.+..++. +++++..|+.+|..++... ++....++.
T Consensus 215 ~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~ 290 (1204)
T 3a6p_A 215 SKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVL 290 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGG
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHH
Confidence 2345777888888876543221 1222322 5566665555 5779999999999998754 222222222
Q ss_pred --cCChHHHHHHhhhcc--c-ccCChhHHHHHHHHHHHHhcCChHhHHHHHH-----------cCChHHHHHhhCCCCHH
Q psy12605 366 --AGLLPKIIANLQKVG--R-IVLRPNLQFEAAWALTNIASGTSAQTQEVVA-----------AGAVPLFLRLLMSPHSN 429 (845)
Q Consensus 366 --~~~i~~Lv~lL~~~~--~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-----------~g~i~~Lv~lL~~~~~~ 429 (845)
...+..++....... . .+.+.++....+..+..+.. .... ++. .+.++.++.+..+++.+
T Consensus 291 l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~-l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~ 366 (1204)
T 3a6p_A 291 FGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCA-LLGADSDVETPSNFGKYLESFLAFTTHPSQF 366 (1204)
T ss_dssp GSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHH-HHHTCSSCCCCTTHHHHHHHHHHHHTSSCHH
T ss_pred HhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHH-HHhccccccChhHHHHHHHHHHHHHhCccHH
Confidence 111334455432110 0 11235566666666666652 1221 221 13466777777788777
Q ss_pred HHHHHHHHHHHhhc
Q psy12605 430 VCEQAVWALGNIIG 443 (845)
Q Consensus 430 v~~~a~~~L~nl~~ 443 (845)
+-..++..-..+..
T Consensus 367 vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 367 LRSSTQMTWGALFR 380 (1204)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHh
Confidence 77776654444443
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=89.01 E-value=7.2 Score=41.19 Aligned_cols=158 Identities=10% Similarity=0.101 Sum_probs=98.2
Q ss_pred cCChhhHHHHHhcCchhhHHhhcc-----------CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc
Q psy12605 270 DGGNDQIQMVIDSGVVPSLIPLLS-----------HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK 338 (845)
Q Consensus 270 ~~~~~~~~~~~~~g~i~~Lv~lL~-----------~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~ 338 (845)
..+...++.+. .+++..|+..|. ..+...+..+++||+.+..........+-....+..|...+.+..
T Consensus 97 t~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~ 175 (383)
T 3eg5_B 97 SHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV 175 (383)
T ss_dssp HSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTS
T ss_pred hCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCc
Confidence 34445556665 566777777773 123467888999999996544444444445578899999999999
Q ss_pred hhhHHHHHHHHHHhhcCCh-HH-HHHHH----------hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH-
Q psy12605 339 EKICKEAVWFLSNITAGNQ-AQ-VQAVI----------DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA- 405 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~-~~-~~~l~----------~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~- 405 (845)
+.++..++..|.-+|.... .. ...++ +..-...++..+.+. .+.+.+..+...+-.+..+.++
T Consensus 176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~----~~~e~~~~~m~lIN~li~~~~dl 251 (383)
T 3eg5_B 176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG----TSIALKVGCLQLINALITPAEEL 251 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT----SCHHHHHHHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc----CcHHHHHHHHHHHHHHHcCCCCH
Confidence 9999999999988876543 21 22221 233466777777654 3555555444444445554432
Q ss_pred -----hHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 406 -----QTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 406 -----~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
.+..+...|..+.+-.+=..+++++..
T Consensus 252 ~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 252 DFRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 355666777777776644445555544
No 125
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=88.17 E-value=15 Score=38.37 Aligned_cols=89 Identities=9% Similarity=0.158 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHh
Q psy12605 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 139 (845)
Q Consensus 60 ~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~l 139 (845)
..+...+..++.++-+. ++. .-..+++.++++- .+.+.++|...+..|...+....+.... +++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKRDIELLLK-----LIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46888899999976543 221 2245799999987 5678899999999999998755555322 67788999
Q ss_pred hCCCChhHHHHHHHHHHHhc
Q psy12605 140 LMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 140 L~s~~~~v~~~a~~~L~nla 159 (845)
|.+.++.+...++.+.+++-
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 99889999999988888874
No 126
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=87.52 E-value=8.7 Score=40.62 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=79.1
Q ss_pred HHHHHHHHcCCChH-HHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CChhHHHHHHHHHHH
Q psy12605 47 DMLVVEAARKDNPE-LQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRPNLQFEAAWALTN 115 (845)
Q Consensus 47 ~~lv~~~l~~~~~~-~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~ 115 (845)
+.++ ..|.+.... ....-+..|+..+..++-.-++.+. .+++..|+.+|..- .+...+..++.||..
T Consensus 7 ~~yv-~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLka 84 (386)
T 2bnx_A 7 MMYI-QELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 84 (386)
T ss_dssp HHHH-HHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 3556 666655332 2234577777777766444456664 56788888887421 134678899999999
Q ss_pred HhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 116 IASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 116 la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
+.. +......++. .+++..|...|.++.+.++..++..|..+|..+
T Consensus 85 lmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 85 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp HTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 975 3555565555 578999999999999999999999998888654
No 127
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=86.63 E-value=5.4 Score=38.44 Aligned_cols=142 Identities=12% Similarity=-0.003 Sum_probs=94.8
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhH-hhcCCchhhHHHHHHHHHHhhc-CChHHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA-LLTHPKEKICKEAVWFLSNITA-GNQAQVQAV 363 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~l 363 (845)
+....+..++..++|..|+..|+.. ... ...++.+.. +-.+.+=.+++-++.++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 3344555777789999999999887 311 124555655 4456677889888888888764 2222
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
..++.+.....+ ++..+|+.|+..+.-.+...... .-..-+++.+-.+..+++.-|+.+..|.|..++.
T Consensus 139 ---~~l~~~~~W~~d-----~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 ---KALPIIDEWLKS-----SNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ---TTHHHHHHHHHC-----SSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcC-----CCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 256777777777 48999999887765433221000 0001135666777788899999999999999999
Q ss_pred CChHHHHHHH
Q psy12605 444 DGPQLRDYVI 453 (845)
Q Consensus 444 ~~~~~~~~l~ 453 (845)
..|+....++
T Consensus 208 ~~Pd~V~~~~ 217 (240)
T 3l9t_A 208 KFPDLVKIEL 217 (240)
T ss_dssp TCHHHHHHHH
T ss_pred hCHHHHHHHH
Confidence 9987544443
No 128
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=86.56 E-value=27 Score=43.23 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=85.4
Q ss_pred cHHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhc-cCCChhHHHHHHHHHHHHhcC--
Q psy12605 45 NLDMLVVEAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLE-RSDRPNLQFEAAWALTNIASG-- 119 (845)
Q Consensus 45 ~i~~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~i~~~a~~~L~~la~~-- 119 (845)
.+..++ ....++ ++..+.+|-..|.++-... + ....+...|. .+.++.+|..|+.+|.+....
T Consensus 12 ~l~~~l-~~~~~p~~~~~~r~~Ae~~L~~~~~~p-~----------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 12 QLVKAV-TVMMDPNSTQRYRLEALKFCEEFKEKC-P----------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHH-HHHHCTTCCHHHHHHHHHHHHHHHHHC-T----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHH-HHHhCCCCChHHHHHHHHHHHHHHhCc-h----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 366666 444444 6777888988887764332 1 3455555553 456789999999999987532
Q ss_pred ---ChhhHHHHHHcCChHHHHHhhCC---CChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHH
Q psy12605 120 ---TSAQTQEVVAAGAVPLFLRLLMS---PHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLR 192 (845)
Q Consensus 120 ---~~~~~~~i~~~g~i~~L~~lL~s---~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~ 192 (845)
+++.+..+. ..++..+...-.. ....++.+.+.++..|+... ++. =.+.++.++.+++.+ ...+.
T Consensus 80 ~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~~--~~~~e 151 (1204)
T 3a6p_A 80 NGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQG--ETQTE 151 (1204)
T ss_dssp GGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHTC--HHHHH
T ss_pred ccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcCC--HHHHH
Confidence 334444333 3344444443211 35788888888888887431 100 013567777777653 35577
Q ss_pred HHHHHHHHhhcC
Q psy12605 193 NVTWVIVNLCRN 204 (845)
Q Consensus 193 ~a~~~L~~l~~~ 204 (845)
.++.+|..++..
T Consensus 152 ~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 152 LVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888888763
No 129
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.64 E-value=26 Score=42.55 Aligned_cols=126 Identities=14% Similarity=0.196 Sum_probs=83.8
Q ss_pred HHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-------CchhhHHHHHHHHHHhhcCChHHH
Q psy12605 288 LIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-------PKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 288 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
+.+.+...+..-+..++++|||+-.. ..++.|..++.. ....+|..|+++|.+++...+...
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v 513 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV 513 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH
T ss_pred HHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH
Confidence 34444556677788999999999432 234445555421 235688899999999987665543
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALG 439 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~ 439 (845)
-+.++++..+.. .++++|..|+..|..-.- +. ..+..+...+.. ++..|.......|.
T Consensus 514 --------~~il~~i~~n~~---e~~EvRiaA~~~Lm~t~P-~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 514 --------QEIVLPIFLNVA---IKSELRIRSCIVFFESKP-SV---------ALVSMVAVRLRREPNLQVASFVYSQMR 572 (1056)
T ss_dssp --------HHHHHHHHHCTT---SCHHHHHHHHHHHHHTCC-CH---------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --------HHHHHHHhcCCC---CChHHHHHHHHHHHHHCc-CH---------HHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 345667775543 588999999888764211 11 124445556654 67889999999999
Q ss_pred HhhcCC
Q psy12605 440 NIIGDG 445 (845)
Q Consensus 440 nl~~~~ 445 (845)
+++...
T Consensus 573 sla~s~ 578 (1056)
T 1lsh_A 573 SLSRSS 578 (1056)
T ss_dssp HHTTCC
T ss_pred HHHhcC
Confidence 998755
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.01 E-value=14 Score=39.03 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=97.6
Q ss_pred ChhhHHHHHhcCchhhHHhhccC-----------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchh
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSH-----------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~ 340 (845)
+...++.+. .+++..|+..|.. .+......+++||..+..........+....++..+...+.+.++.
T Consensus 37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~ 115 (386)
T 2bnx_A 37 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 115 (386)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred CcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 334445553 4566666666621 1346788899999998655444444445557888999999999999
Q ss_pred hHHHHHHHHHHhhcCCh-HH-HHHH----------HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---
Q psy12605 341 ICKEAVWFLSNITAGNQ-AQ-VQAV----------IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--- 405 (845)
Q Consensus 341 ~~~~a~~~L~nl~~~~~-~~-~~~l----------~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--- 405 (845)
++..++..|..+|.... .. ...+ -+..-...++..+.++ .+.+.+..+...+-.+..+.++
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~----~~~e~~~a~m~lIN~lv~~~~dl~~ 191 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG----TSIALKVGCLQLINALITPAEELDF 191 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT----SCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC----ChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 99999888887766443 11 2222 1233556677777654 3556655555444445554442
Q ss_pred ---hHHHHHHcCChHHHHHhhCCCCHHHHHH
Q psy12605 406 ---QTQEVVAAGAVPLFLRLLMSPHSNVCEQ 433 (845)
Q Consensus 406 ---~~~~l~~~g~i~~Lv~lL~~~~~~v~~~ 433 (845)
.+..+...|..+.+-.+=...++++..+
T Consensus 192 R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 192 RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 4566777777777766655666665554
No 131
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=84.70 E-value=36 Score=34.47 Aligned_cols=119 Identities=9% Similarity=0.187 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~ 378 (845)
|...+...|+-+ .++.....-++...++..+......++.++.+..+..|..++....-.. .--.+.+|-++..+..
T Consensus 259 VvtR~FDLL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhcc
Confidence 334445555444 5555556667888899999999999999999999999998854321110 0014568889999887
Q ss_pred cccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC
Q psy12605 379 VGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424 (845)
Q Consensus 379 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~ 424 (845)
+ .+.++.....+.|.|.+.+........+.+|+++.|...+.
T Consensus 336 h----~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 336 H----PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp C----CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred C----CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 7 48899999999999999988777777788888888777664
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.95 E-value=2.2 Score=38.98 Aligned_cols=75 Identities=5% Similarity=0.025 Sum_probs=54.4
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC-CCHHHHHHHHHHHHHhcCccc
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH-ENVEIYKLAYDIIERYFSEVE 816 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~ 816 (845)
++..|.+-|.+.++.++..||..|..+++-+...| ...+....+++.|..+... .++.|++++..+++.......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F---h~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF---HLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH---HHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH---HHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 44556666778899999999999999999877653 2334445555666666554 567899999999987765443
No 133
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=72.41 E-value=20 Score=43.64 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=83.9
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc------CCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER------SDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.+...+...+..++++|+++-. . ..++.|.+++.. +....+|..|.++|..++...++...
T Consensus 447 ~~~~~~~~~~~~~~LkaLGN~g~-p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~ 514 (1056)
T 1lsh_A 447 QSSDRAKEEEIVLALKALGNAGQ-P-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ 514 (1056)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-G-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH
T ss_pred HHHhcCChHHHHHHHHHhhccCC-h-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH
Confidence 44455566666666666666422 1 247888888742 12346888999999999876444333
Q ss_pred HHHHcCChHHHHHhh--CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 126 EVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
+.|+++. ...++++|..|+..|..-. |.. ..+..+...+..+.+..+.......|.++++
T Consensus 515 --------~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 515 --------EIVLPIFLNVAIKSELRIRSCIVFFESK---PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp --------HHHHHHHHCTTSCHHHHHHHHHHHHHTC---CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHhcCCCCChHHHHHHHHHHHHHC---cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 3456777 4568899999999886543 211 1255667777776677888888888999988
Q ss_pred CCCC
Q psy12605 204 NKDP 207 (845)
Q Consensus 204 ~~~~ 207 (845)
...+
T Consensus 577 s~~P 580 (1056)
T 1lsh_A 577 SSNP 580 (1056)
T ss_dssp CCSG
T ss_pred cCCc
Confidence 7644
No 134
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=70.32 E-value=1.2e+02 Score=32.40 Aligned_cols=248 Identities=15% Similarity=0.145 Sum_probs=121.0
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
...+..++...+..|+.+++++|+.=|+..-.+|..|-+.-...|..+... +-..+.+++-....-.-......++..+
T Consensus 153 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSI 231 (449)
T 2npp_B 153 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI 231 (449)
T ss_dssp TTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHH
Confidence 334556666788899999999999989888888877765544455555432 1223444442221111223445555555
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
..+-..+-+.....-....|..+.+...... ..+ .-..|+....+.++.....
T Consensus 232 inGfa~PLKeehk~fl~~vLlPLhk~~~l~~----------y~~--------------qL~ycv~qf~eKDp~L~~~--- 284 (449)
T 2npp_B 232 INGFALPLKEEHKIFLLKVLLPLHKVKSLSV----------YHP--------------QLAYCVVQFLEKDSTLTEP--- 284 (449)
T ss_dssp HSSCCSSCCHHHHHHHHHTTGGGGGSSCGGG----------THH--------------HHHHHHHHHHHHCGGGHHH---
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHccchhHH----------hHH--------------HHHHHHHHHHhcCcHhHHH---
Confidence 5554333333333233344444444332220 001 1112222112222222111
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
++..|+...-..+..=...-+.-|..+...- +...+.+. ......+..++++.+-.+.+.|+..+.| +...
T Consensus 285 --vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~ 356 (449)
T 2npp_B 285 --VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIM 356 (449)
T ss_dssp --HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHH
T ss_pred --HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHH
Confidence 2334444443333333333444455544321 22112121 1356677778888888888888765544 2222
Q ss_pred HHHHh--cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 361 QAVID--AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 361 ~~l~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
..+.+ ..++|.++..+.......=+..++..+..++.-+...++.
T Consensus 357 ~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~ 403 (449)
T 2npp_B 357 SLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQK 403 (449)
T ss_dssp HHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHH
Confidence 22221 2245666666643221112567888888877777665543
No 135
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=68.84 E-value=35 Score=34.17 Aligned_cols=140 Identities=9% Similarity=0.074 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHHhcCChhhHHHHh-cCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHH
Q psy12605 297 VKVQTASLRAVGNIVTGTDEQTQVIL-NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID--AGLLPKII 373 (845)
Q Consensus 297 ~~v~~~al~~L~nl~~~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv 373 (845)
..-...|+..|-.++.+-....+.+. +...+..|+ +.....+.+++.|+.+++....++|+..+.+.+ ..++..++
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 33556677777777544333333222 222333333 223356678999999999999999999998876 56666666
Q ss_pred HHhhhcccc--cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHhh
Q psy12605 374 ANLQKVGRI--VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNII 442 (845)
Q Consensus 374 ~lL~~~~~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~nl~ 442 (845)
.-|...... .....++..-+.++..|........ ..++..|.+++... ++.++..++..+..+-
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~-----~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP-----IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh-----hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 655442100 0133556666777777777653221 45667787777766 8888888887776654
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.99 E-value=6.3 Score=34.82 Aligned_cols=74 Identities=8% Similarity=0.061 Sum_probs=53.9
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhcCcc
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 815 (845)
++..|.+-|.+.++.++..||..|..+++-++..+. ..+....+.+.|..+....++.|++++..++......-
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~---~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFH---LEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH---HHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHH---HHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 455566667788999999999999999998776543 23334445555666666678899999999998765433
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.95 E-value=9.1 Score=34.79 Aligned_cols=67 Identities=6% Similarity=0.022 Sum_probs=52.4
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~ 118 (845)
..|++.++.+++.|+.-|-.++.+.......++.....+..|+.+++...++.++..++..+..++.
T Consensus 59 krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 59 KRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 6778889999999999888888776554445666677888889988654677888888888887763
No 138
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=62.69 E-value=71 Score=33.38 Aligned_cols=121 Identities=14% Similarity=0.200 Sum_probs=78.2
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
..+++.++.+-.+++.+++...+..|...+....+... .+++.|..++.+.++.+.+.+..+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tsl--------- 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRDENVNVVKKAILTMTQL--------- 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH---------
Confidence 36778888888888999999999999988865433322 3567788888888888888888888776
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
.+.+++++...+ +..-..+.+|....-. -..++.++.+.+..++..|+-.+-.+
T Consensus 128 -------Ypl~f~~i~~~~----~~~~~~e~~W~~m~~l---------------K~~Il~~~ds~n~GVrl~aiKFle~V 181 (386)
T 3o2t_A 128 -------YKVALQWMVKSR----VISELQEACWDMVSAM---------------AGDIILLLDSDNDGIRTHAIKFVEGL 181 (386)
T ss_dssp -------HHHHHHHHHHC-----CCCHHHHHHHHHHHHH---------------HHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHhcCC----CcchhHHHHHHHHHHH---------------HHHHHHHhccCCcchHHHHHHHHHHH
Confidence 234444444431 1111223333333221 23455667778888888888776654
Q ss_pred h
Q psy12605 442 I 442 (845)
Q Consensus 442 ~ 442 (845)
.
T Consensus 182 I 182 (386)
T 3o2t_A 182 I 182 (386)
T ss_dssp H
T ss_pred H
Confidence 3
No 139
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=61.17 E-value=13 Score=32.58 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=51.8
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hChHHHHHhhhcCCC--------HHHHHHHHHHHH
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEE-CGGLDKIEMLQNHEN--------VEIYKLAYDIIE 809 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e-~g~~~~L~~l~~~~~--------~~v~~~a~~~l~ 809 (845)
+...|.+=|++.++.++..||.+|..|++.|...| +..+.+ ...+..+......++ ..|+.+|.++++
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f---~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF---RREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH---HHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH---HHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 45677777888889999999999999998886653 333322 223333333332222 469999999999
Q ss_pred HhcCcccC
Q psy12605 810 RYFSEVED 817 (845)
Q Consensus 810 ~~~~~~~~ 817 (845)
-+|+.+..
T Consensus 127 ll~d~~~~ 134 (140)
T 1vdy_A 127 AIFSEENG 134 (140)
T ss_dssp HHTCCSSC
T ss_pred HHhCcCCC
Confidence 98876543
No 140
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=60.27 E-value=1.7e+02 Score=30.65 Aligned_cols=247 Identities=15% Similarity=0.144 Sum_probs=114.4
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 200 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 200 (845)
+...+..++...+-.|+.+++|+|+.=|+..-.+|..+-+.-...|..++.. +-..+.+++-....-.-......++..
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 3334555666678889999999999999988888888776555555554432 122334443221111111223333333
Q ss_pred hhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy12605 201 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVI 280 (845)
Q Consensus 201 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 280 (845)
+..+-..+-+.....-....|..+-+..... ...+ .-..|+....+.++.....
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~----------~y~~--------------qL~ycv~qf~eKDp~L~~~-- 251 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLS----------VYHP--------------QLAYCVVQFLEKDSTLTEP-- 251 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGG----------GTHH--------------HHHHHHHHHHHHCGGGHHH--
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcch----------hhHH--------------HHHHHHHHHHHhCchhHHH--
Confidence 3333322222222222333333333332221 0001 1112222112222222221
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
++..++...-..++.=...-+.-+..+...- +...+.+.. .....+..++.+.+-.+.+.|+..+.| +..
T Consensus 252 ---vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnN-----e~i 322 (403)
T 3fga_B 252 ---VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYI 322 (403)
T ss_dssp ---HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHH
T ss_pred ---HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhcc-----HHH
Confidence 2333344433333333333444444544322 121121211 255667777888888888877665533 222
Q ss_pred HHHHHh--cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 360 VQAVID--AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 360 ~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
...+.+ ..++|.+...+.......=+..++..+..++.-+..-+
T Consensus 323 ~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 323 MSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhC
Confidence 222211 22455555555432211126778888888877776544
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.97 E-value=23 Score=32.38 Aligned_cols=72 Identities=6% Similarity=0.052 Sum_probs=53.7
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC------CCHHHHHHHHHHHHHhc
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH------ENVEIYKLAYDIIERYF 812 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~------~~~~v~~~a~~~l~~~~ 812 (845)
++..|.+-|.+.++.++..||..|..+++.+...| ...+....+++.|..+... .+..|++++..+++...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F---h~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF---HNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH---HHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH---HHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45566677788899999999999999999877653 3344555666777776642 35789999999998655
Q ss_pred C
Q psy12605 813 S 813 (845)
Q Consensus 813 ~ 813 (845)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=57.18 E-value=22 Score=31.59 Aligned_cols=73 Identities=4% Similarity=-0.018 Sum_probs=55.4
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC------CCHHHHHHHHHHHHHhc
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH------ENVEIYKLAYDIIERYF 812 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~------~~~~v~~~a~~~l~~~~ 812 (845)
++..|.+-|.+.++.++..||..|..+++-++..| ...+....+++.|..+... .+..|++++..+++...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~f---h~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKF---HSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH---HHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45566667788999999999999999999877653 3445556677777777653 36789999999998765
Q ss_pred Cc
Q psy12605 813 SE 814 (845)
Q Consensus 813 ~~ 814 (845)
..
T Consensus 116 ~~ 117 (148)
T 1mhq_A 116 VW 117 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 143
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.27 E-value=11 Score=36.28 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=52.9
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~ 118 (845)
..|++.++.+++.|+.-|-.++.+.......++.....+..|+.+++...++.++..++..+..++.
T Consensus 52 krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 52 KKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6788999999999999888887766544455666667788888888766677899999888888763
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.22 E-value=21 Score=31.76 Aligned_cols=72 Identities=8% Similarity=-0.006 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc-----CCChhHHHHHHHHHHHHhc
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER-----SDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~i~~~a~~~L~~la~ 118 (845)
+..+. ..+++.++.++..|+.-|-.++.+.......++.....+..|+.+++. ..++.++..++..+..++.
T Consensus 50 ~ral~-krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLA-HKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHH-HHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 33444 778899999999999999888887765555667677888999999852 2457899999888888874
No 145
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=54.80 E-value=99 Score=30.91 Aligned_cols=135 Identities=11% Similarity=0.094 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHH-hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC--CccchhhHh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVI-DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC--DALSHFPAL 333 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~~l 333 (845)
....++..|..++-.-.-..+.+- +-..+..|+ +....++.+++.|.++|+.....++.....+.+. .++..+..-
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHH
Confidence 445666666666533222233332 223344444 2244567799999999999999998877766653 222222222
Q ss_pred h----cC---CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 334 L----TH---PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 334 L----~~---~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
| .. ....+.+.-+.+|..|....... ...++..|.+++.... .++.+|..++..+..+-
T Consensus 123 L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~---~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 123 LSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNN---KDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCC---CCHHHHHHHHHHHHHHc
Confidence 2 11 23466677778888886664221 2456788888886531 37888888888777764
No 146
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=54.54 E-value=38 Score=36.15 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=52.8
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
+...+..++...+..|+.+++++++.-|......|..+-+.-...|..+..+ +-..+.+++.....-.-...+...++.
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3445566677788899999999999999999999988876555555444322 122344444333332333444555556
Q ss_pred hhcCCC
Q psy12605 484 LCRNKD 489 (845)
Q Consensus 484 L~~~~~ 489 (845)
+..|..
T Consensus 231 IinGfa 236 (449)
T 2npp_B 231 IINGFA 236 (449)
T ss_dssp HHSSCC
T ss_pred HHhccC
Confidence 666553
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=54.35 E-value=21 Score=31.72 Aligned_cols=72 Identities=10% Similarity=-0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-----CChhHHHHHHHHHHHHhc
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-----DRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~i~~~a~~~L~~la~ 118 (845)
+..+. ..|++.++.++..|+.-|-.++.+.......++.....+..|+.++... .++.++..++..+..++.
T Consensus 40 ~rai~-krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLA-HKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHH-HHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 33444 7889999999999999998888876555556677778999999998531 367899999888888874
No 148
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.28 E-value=25 Score=31.26 Aligned_cols=73 Identities=4% Similarity=0.050 Sum_probs=54.5
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhc------CCCHHHHHHHHHHHHHhc
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQN------HENVEIYKLAYDIIERYF 812 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~------~~~~~v~~~a~~~l~~~~ 812 (845)
++..|.+-|.+.++.++..||..|..+++-++..| ...+....+++.|..+.. ..+..|++++..++....
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~f---h~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRF---HDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHH---HHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHH---HHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 45556666778899999999999999999887654 334445556666776664 346789999999998765
Q ss_pred Cc
Q psy12605 813 SE 814 (845)
Q Consensus 813 ~~ 814 (845)
..
T Consensus 126 ~~ 127 (149)
T 3g2s_A 126 VG 127 (149)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 149
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=53.00 E-value=64 Score=33.72 Aligned_cols=126 Identities=17% Similarity=0.125 Sum_probs=71.0
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
+...+..++...+..|+.+++++++.-|......|.++-+.-...|..+.++ +-..+.+++.....-.-...+...++.
T Consensus 164 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgs 242 (392)
T 2jak_A 164 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 242 (392)
T ss_dssp HHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 3445666677788899999999999999999999988766555555444321 223455555544433334455556666
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChh----HHHHHHHHhhhcCchh
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTS----VSIYLWLSIIEKNPQI 530 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~----v~~~~~l~~l~~~~~~ 530 (845)
+..|...+-..+...-....|..|.....-. -..+|...++..++..
T Consensus 243 IIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L 293 (392)
T 2jak_A 243 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTL 293 (392)
T ss_dssp HHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGG
T ss_pred HHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchh
Confidence 6666543333332222334444444332211 2334555555555443
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=51.85 E-value=53 Score=34.48 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=53.2
Q ss_pred ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHH
Q psy12605 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 482 (845)
Q Consensus 403 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~ 482 (845)
++...+..++...+..|+.+++++++.=|...-..|.++-+.-...|..+.++ +-..+.+++.....-........+++
T Consensus 118 ~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilg 196 (403)
T 3fga_B 118 QPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILG 196 (403)
T ss_dssp CHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred ChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHH
Confidence 34555666777788889999999999999999999999877666666554331 11234444433322222333444445
Q ss_pred HhhcCCC
Q psy12605 483 NLCRNKD 489 (845)
Q Consensus 483 nL~~~~~ 489 (845)
.+..|..
T Consensus 197 sIinGfa 203 (403)
T 3fga_B 197 SIINGFA 203 (403)
T ss_dssp HHHHHCC
T ss_pred HHHcccC
Confidence 5555443
No 151
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=49.92 E-value=19 Score=31.68 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=48.8
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHh
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la 117 (845)
..|++.++.++..|+.-|-.++.+.......++.....+..|+.+++ ..++.++..++..+..++
T Consensus 49 Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~-~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 49 RRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN-KGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Confidence 66888889889888888877777665444445556677888888884 356788888888888776
No 152
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=47.53 E-value=46 Score=29.85 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh-HHHHHHcCChHH-HHHhhCC
Q psy12605 65 AVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ-TQEVVAAGAVPL-FLRLLMS 142 (845)
Q Consensus 65 a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~-~~~i~~~g~i~~-L~~lL~s 142 (845)
....++.++...+..+.+ .+..|.+-|++..++.++..|+..|-.+.+.+... ...+.+...+.. |++++..
T Consensus 36 ~~leicD~I~~~~~~~k~------a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~ 109 (157)
T 1elk_A 36 LNMEICDIINETEEGPKD------ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILP 109 (157)
T ss_dssp HHHHHHHHHHHSSSHHHH------HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHST
T ss_pred HHHHHHHHHhCCCccHHH------HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhcc
Confidence 344455554444332222 36677788854578899999999888888754333 334555667776 7888742
Q ss_pred ---CChhHHHHHHHHHHHhc
Q psy12605 143 ---PHSNVCEQAVWALGNII 159 (845)
Q Consensus 143 ---~~~~v~~~a~~~L~nla 159 (845)
+...|++.++..+...+
T Consensus 110 k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 110 KNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp TTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 34578888888777665
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.83 E-value=25 Score=32.15 Aligned_cols=67 Identities=7% Similarity=-0.052 Sum_probs=52.1
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc-----CCChhHHHHHHHHHHHHhc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER-----SDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~i~~~a~~~L~~la~ 118 (845)
..|++.++.+++.|+.-|-.++.+.......++.....+..|+.++.. ..++.++..++..+..++.
T Consensus 57 krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 57 HKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 678899999999999999888877654445567677889999999842 1356889998888888874
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.47 E-value=22 Score=34.10 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHh
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la 117 (845)
..|++.++.++..|+.-|-.++.+.......++.....+..|+.+++...++.++..++..+..++
T Consensus 49 krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 49 KKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 678889999999999888888776544444566666788888888865556788888888777776
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=44.16 E-value=50 Score=31.68 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=58.1
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
++..|.+-|++.++.++..|+..|-.+.... ..+...+.....+..|..+++...+..++..++..+......-...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~ 125 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEPK 125 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 5667778888899999999999888887553 335556666666777777887666778999988888887764433333
Q ss_pred h
Q psy12605 211 M 211 (845)
Q Consensus 211 ~ 211 (845)
+
T Consensus 126 l 126 (226)
T 3zyq_A 126 Y 126 (226)
T ss_dssp G
T ss_pred h
Confidence 3
No 156
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=43.69 E-value=2.1e+02 Score=29.83 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=49.6
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
...+..++...+..|+.+++++|+.=|+..-.+|..+-+.-...|..+++. +-..+.+++-....-.-......++..+
T Consensus 165 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsI 243 (392)
T 2jak_A 165 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI 243 (392)
T ss_dssp HHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 334455666678899999999999988888888877755444555554432 2233455553322112223445555555
Q ss_pred hcCCC
Q psy12605 202 CRNKD 206 (845)
Q Consensus 202 ~~~~~ 206 (845)
..+-.
T Consensus 244 Ingfa 248 (392)
T 2jak_A 244 INGFA 248 (392)
T ss_dssp HHTCC
T ss_pred HhccC
Confidence 55543
No 157
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.35 E-value=61 Score=30.88 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=54.7
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
++..|.+-|++.++.++..|+..|-.+.... +.+...+.....+..|+.++....+..++..+...+......-
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 5556677788889999999999998888665 3456666666677778887766556788888887777766533
No 158
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.64 E-value=66 Score=28.78 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=46.8
Q ss_pred HHHc-CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHH-HHHhhccC--CChhHHHHHHHHHHHHhc
Q psy12605 52 EAAR-KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPV-LVECLERS--DRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 52 ~~l~-~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~-Lv~lL~~~--~~~~i~~~a~~~L~~la~ 118 (845)
..|+ +.++.++..|+.-|-.++.+.......++.....+.. |+.++... ....++..++..+..++.
T Consensus 60 krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 60 KRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5676 4678888888888887777665444455666677887 78887322 234788888888877763
No 159
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=32.36 E-value=36 Score=33.38 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=64.9
Q ss_pred CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh----cC----CchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL----TH----PKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL----~~----~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
+.++..+.-++++++|+..+....++.+.+......++..+ .+ .+..++..++..+.|++....... .+
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~---~~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC---SC
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc---ch
Confidence 44667899999999999876553455554433344444443 21 256788888889999865311100 01
Q ss_pred cCChHHHHHHhhhc---c-cccCChhHHHHHHHHHHHHhcCC
Q psy12605 366 AGLLPKIIANLQKV---G-RIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~---~-~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.+....+++++..- . ..+.+++....+..+++++...+
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 23445566666531 0 00136788889999999988544
No 160
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=31.56 E-value=1.1e+02 Score=36.76 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=63.9
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC---CCCHHHHHHHHHHHH--HhhcCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP---DIPISFLRNVTWVIV--NLCRNKD 206 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~---~~~~~~~~~a~~~L~--~l~~~~~ 206 (845)
.+.-|+++--+.-++||..|-.+|......-+..+..+ +|.+++.|+. +.+.+-...|+++|. .+...
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-- 206 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-- 206 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH--
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH--
Confidence 46677787778888999999999999887666566554 6777877755 334455666777655 22211
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchh
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSV 232 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~ 232 (845)
...+.......++.|++....+.+++
T Consensus 207 ~~~d~~~~~~~~~ali~~~~~dKpsI 232 (997)
T 1vsy_5 207 LMTDYKDIGRLIFLLIECCRVNELEI 232 (997)
T ss_dssp GGGCHHHHHHHHHHHHHTCSCSSSST
T ss_pred HhcChHHHHHHHHHHHHhCcCCCHHH
Confidence 12345566778888888877666664
No 161
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=27.23 E-value=6.9e+02 Score=29.78 Aligned_cols=102 Identities=11% Similarity=0.005 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc---CCChhHHHHHHHHHH-----HHh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER---SDRPNLQFEAAWALT-----NIA 117 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~i~~~a~~~L~-----~la 117 (845)
+..++ +...|.-++++..|=.+|...+..-.. .... ++|.+++.|+. +.+.+--..|+++|. ...
T Consensus 135 l~dL~-~Ls~S~Y~~VR~~AQ~~L~~~~~~~~g-s~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~ 207 (997)
T 1vsy_5 135 LVDII-QLATSLYPDIYKPAQGTLVHCMKQLVG-SYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKL 207 (997)
T ss_dssp HHHHH-HHHTSSCHHHHHHHHHHHHHHHTTBTT-HHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHG
T ss_pred HHHHH-HHhcCchHHHHHHHHHHHHHHHHhccc-HHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHH
Confidence 45667 677788889999998888887765422 1222 58999999965 334444455666554 122
Q ss_pred cCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 118 ~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
..+..... -.++.|++....+.++++..+-.+...+.
T Consensus 208 ~~d~~~~~-----~~~~ali~~~~~dKpsI~~l~~~l~~~i~ 244 (997)
T 1vsy_5 208 MTDYKDIG-----RLIFLLIECCRVNELEIGMYADKILTDIV 244 (997)
T ss_dssp GGCHHHHH-----HHHHHHHHTCSCSSSSTTTHHHHHHHHHH
T ss_pred hcChHHHH-----HHHHHHHHhCcCCCHHHHHHHHHHHHHHH
Confidence 22222221 26777888777777776665555444443
No 162
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=25.84 E-value=75 Score=33.54 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=67.9
Q ss_pred HHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc-CCHHHHHHhhccC-------CChhHHHHHHHHHHHHhcCChhhH
Q psy12605 53 AARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLERS-------DRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 53 ~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~-g~i~~Lv~lL~~~-------~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+.+..+..+..+++.+.++.++. ...+.++.. ...+.+++.+... .+..++..++..+.|++....+.+
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~--~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~ 347 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN 347 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCCc--chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc
Confidence 334456778888888888887654 223444432 3455666655211 245788999999999985311111
Q ss_pred HHHHHcCChHHHHHhhC---------CCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 125 QEVVAAGAVPLFLRLLM---------SPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~---------s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
. +....+.++.++. ..+++....++-+||+|...++..+.
T Consensus 348 ~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~ 396 (425)
T 3pst_A 348 S---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 396 (425)
T ss_dssp S---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred c---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 0 1234456666665 24788999999999999865544443
No 163
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=25.63 E-value=4.7e+02 Score=25.36 Aligned_cols=120 Identities=14% Similarity=0.218 Sum_probs=74.4
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
.+++.++++..+++.+++...+..|...+....+... ..++.|..++.+.++.+.+.+..+..++
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i---------- 117 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNSAQVIKRVIQACGSI---------- 117 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHH----------
Confidence 3456677766677888999999999888755443322 3566788888888888888888777776
Q ss_pred HHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.|.+++.+-..+ +..-..+.+|-...- .-..++.+.++.+..++..|+..+..+.
T Consensus 118 ------Y~~~l~~i~~~~----~~~~~~~~~W~~m~~---------------lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 118 ------YKNGLQYLCSLM----EPGDSAEQAWNILSL---------------IKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp ------HHHHHHHHTTSS----SCCHHHHHHHHHHHH---------------HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCC----CCcchHHHHHHHHHH---------------HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 344444444431 111112333322221 1233556677788888888877766543
No 164
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.52 E-value=1.2e+02 Score=31.34 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=65.1
Q ss_pred CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh----c----CCchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL----T----HPKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL----~----~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
...+..+.-++++++|+..+....++.+.+......++..+ . ..+..++.+++..+.|++....... .+
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~ 286 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SD 286 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SC
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---ch
Confidence 45678899999999999776543444443322233344433 1 2256788888888999865321100 01
Q ss_pred cCChHHHHHHhhhc-ccc---cCChhHHHHHHHHHHHHhcCCh
Q psy12605 366 AGLLPKIIANLQKV-GRI---VLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~-~~~---~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
......+.+++..- +.. ..+++....++.++++++...+
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 23455677777620 000 1478899999999999986443
No 165
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=24.61 E-value=2.2e+02 Score=28.74 Aligned_cols=198 Identities=11% Similarity=0.084 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchh-HHHHHHHHHHHHHhhHhHhhhh-
Q psy12605 597 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMV-LHNVLLQMSVFLQNVEERMIYS- 674 (845)
Q Consensus 597 ~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 674 (845)
..++++.+..+.-.....+.. ..+...++|.+++.. +.-|.++.-.. -..|+..++++.+++++...-.
T Consensus 43 R~vKkeiLkLiet~i~~~~d~--~~v~~~~ippLl~~V-------L~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~v 113 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDP--QMVAENFVPPLLDAV-------LIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEI 113 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH--HHHHHHTHHHHHHHH-------HHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHH-------HHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhH
Confidence 356777777776665432221 123345677777543 23344433222 2447778888888876543211
Q ss_pred ccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHH---HcCCchHHhhhhcccc
Q psy12605 675 SFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLV---QEGVIPPFCDLLSCKD 751 (845)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~---~~~~i~~L~~~L~~~d 751 (845)
..+.+.+ ...++-++.+. -..-|+.|.+=...|..+...+-+ ....+- -..++..+++..++.+
T Consensus 114 p~Il~~V------Fe~TL~MI~~d------f~eyPehR~~Ff~LL~ai~~~cF~-al~~lp~~~fklvidsiiWa~kH~~ 180 (321)
T 1w9c_A 114 PQIFDAV------FECTLNMINKD------FEEYPEHRTNFFLLLQAVNSHCFP-AFLAIPPTQFKLVLDSIIWAFKHTM 180 (321)
T ss_dssp HHHHHHH------HHHHHHHHSST------TTCSHHHHHHHHHHHHHHHHHCTT-HHHHSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHH------HHHHHHHHhcc------cccChHHHHHHHHHHHHHHHHhHH-HHHcCCHHHHHHHHHHHHHHcCCCC
Confidence 0111000 11122222221 145677887776666666532211 111110 0135667888899999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHh----hhcCCCHHHHHHHHHHHHHhcCcccC
Q psy12605 752 AQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEM----LQNHENVEIYKLAYDIIERYFSEVED 817 (845)
Q Consensus 752 ~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~----l~~~~~~~v~~~a~~~l~~~~~~~~~ 817 (845)
.++-+.++.++..++...++. .++...|.+.-..+.|++ +..+.-..-.+.=..+|.+.|...++
T Consensus 181 r~V~e~gL~il~~ll~n~~~~-~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 181 RNVADTGLQILFTLLQNVAQE-EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 999999999999999876542 245566666666666553 33333333344556677777765544
No 166
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.96 E-value=96 Score=32.73 Aligned_cols=142 Identities=14% Similarity=0.127 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHhcCCccchhh-HhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh
Q psy12605 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFP-ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378 (845)
Q Consensus 300 ~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~-~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~ 378 (845)
+-+++..++-++...... +.+..++ ..+.+..+..+.-++.+++|+..+..-....+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 566777777776543321 1122122 22234567888899999999966654233333323335566665532
Q ss_pred cc---cccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC---------CCCHHHHHHHHHHHHHhhcCCh
Q psy12605 379 VG---RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM---------SPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 379 ~~---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~---------~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
.- ....+..++..++..+.|++........ +......++..+. ..+++....++.+||++...++
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 10 0002467888999999998752110000 0123345566655 2588999999999999997665
Q ss_pred HHHHH
Q psy12605 447 QLRDY 451 (845)
Q Consensus 447 ~~~~~ 451 (845)
..+..
T Consensus 393 ~~~~~ 397 (425)
T 3pst_A 393 TLRQF 397 (425)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 167
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=22.03 E-value=50 Score=22.44 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHhhhhhH
Q psy12605 2 RRRRNEVTVELRKNKRE 18 (845)
Q Consensus 2 ~~~r~~~~~~lrk~kr~ 18 (845)
||+.++..-.+||.|+.
T Consensus 13 Rkk~eeler~lrk~kk~ 29 (50)
T 1a92_A 13 RKKLEELERDLRKLKKK 29 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888888888887654
No 168
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.31 E-value=76 Score=32.77 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=65.1
Q ss_pred HcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc-CCHHHHHHhhcc-------CCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 54 ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLER-------SDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 54 l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~-g~i~~Lv~lL~~-------~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.+..+..+..+++.+.++.++. ...+.++.. .....+++.+.. ..+..++..++..+.|++....+.+.
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~--~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~ 285 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNE--NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS 285 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCT--TTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCChhHHHHHHHHHHHhccCc--chHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 33556778888888888887654 223444432 123444544411 12467899999999999853111110
Q ss_pred HHHHcCChHHHHHhhC---------CCChhHHHHHHHHHHHhcCCChhh
Q psy12605 126 EVVAAGAVPLFLRLLM---------SPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~---------s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
+....+.++.++. ..+++....++-+||++...++..
T Consensus 286 ---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~ 331 (362)
T 3l3f_X 286 ---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTL 331 (362)
T ss_dssp ---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHH
T ss_pred ---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHH
Confidence 1234456666665 358889999999999998544433
Done!