RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12605
(845 letters)
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 377 bits (970), Expect = e-122
Identities = 210/455 (46%), Positives = 269/455 (59%), Gaps = 36/455 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
+RRRR E VELRK KREE L KRRN+ E M Q L + + D+
Sbjct: 25 LRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSDD 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
E QL AV RKLLS + +PPI+ +I +G++P VE ++ R LQFEAAWALTNIAS
Sbjct: 85 IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GT+ QT+ VV AGAVPLF++LL S +V EQAVWALGNI GD RDYV+ G + PL
Sbjct: 145 GTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL 204
Query: 179 LSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
L + I IS LRN TW + NLCR K+PPP S I + LP L LI+ D V
Sbjct: 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEV----- 259
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
LVD WA+SYL+DG N++IQ V+D G+ L+ LLSH+
Sbjct: 260 --------------------LVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA 299
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
K+QT +LR+VGNIVTG+D+QTQVI+NC AL F +LL+ PKE I KEA W +SNITAGN
Sbjct: 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT 359
Query: 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEV---VAAG 414
Q+QAVIDA L+P +I L ++ EA WA++N SG + + V+ G
Sbjct: 360 EQIQAVIDANLIPPLIHLLS-----SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQG 414
Query: 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449
+ LL + + E A+ A+ NI+ G Q R
Sbjct: 415 FIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR 449
Score = 286 bits (734), Expect = 3e-87
Identities = 176/548 (32%), Positives = 247/548 (45%), Gaps = 104/548 (18%)
Query: 311 VTGTDEQTQVILNCDALSHFP----ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366
V+ E + + + S P L + E+ + F ++ +Q VIDA
Sbjct: 54 VSEEAESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDA 113
Query: 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 426
G++P+ + + ++ R +L QFEAAWALTNIASGT+ QT+ VV AGAVPLF++LL S
Sbjct: 114 GVVPRFVEFMDEIQRDML----QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST 169
Query: 427 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLC 485
+V EQAVWALGNI GD RDYV+ G + PLL + I IS LRN TW + NLC
Sbjct: 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229
Query: 486 RNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YLWLSIIEKNPQISKILVSKMKVCSRY 544
R K+PPP S I + LP L LI+ D V + W
Sbjct: 230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA----------------------- 266
Query: 545 LYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV 604
+ YLS GP Q +L+ LL+H KI A+
Sbjct: 267 ISYLS--DGPNEK------------------IQAVLDVGIPGRLVELLSHESAKIQTPAL 306
Query: 605 WFLSNITAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNNMVLHNVL 657
+ NI G+ Q Q +I+ G L + N++K +C ++ N+ N
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS------NITAGNTE 360
Query: 658 LQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717
+V N+ +I+ L A E++ +KEA W
Sbjct: 361 QIQAVIDANLIPPLIHL-------LSSA----------------------EYKIKKEACW 391
Query: 718 AISNLTISGNR--DQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA---- 771
AISN T G D + LV +G I P CDLL D ++I+V LD I N+LK+ +
Sbjct: 392 AISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR 451
Query: 772 ---QVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDNLGPQVTDG 828
+ A +E+ GG+D I LQ+ N IY AY IIE++F E + D L P+
Sbjct: 452 YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN 511
Query: 829 GFELDQNP 836
F N
Sbjct: 512 TFTFGSNV 519
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 114 bits (288), Expect = 4e-30
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
EA+I +G LP LV L SD N+Q EAAWAL+N+++G + Q VV AG +P ++LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59
Query: 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
S V + A+WAL N+ + V+ G VP L++ + +N T + NL
Sbjct: 60 SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNL 118
Query: 202 CR 203
Sbjct: 119 AS 120
Score = 105 bits (263), Expect = 1e-26
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 420
+AVI AG LP +++ L N+Q EAAWAL+N+++G + Q VV AG +P +
Sbjct: 1 EAVIQAGGLPALVSLLSS-----SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV 55
Query: 421 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV 480
+LL S V + A+WAL N+ + V+ G VP L++ + +N T
Sbjct: 56 QLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGA 114
Query: 481 IVNLCR 486
+ NL
Sbjct: 115 LSNLAS 120
Score = 99.3 bits (248), Expect = 1e-24
Identities = 32/99 (32%), Positives = 54/99 (54%)
Query: 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315
+ + WALS L+ G ND IQ V+++G +P+L+ LL ++ +V A+L A+ N+ G +
Sbjct: 22 NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81
Query: 316 EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
+ ++L + LL E I K A LSN+ +
Sbjct: 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 94.3 bits (235), Expect = 7e-23
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 277 QMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336
+ VI +G +P+L+ LLS + VQ + A+ N+ G ++ Q ++ L LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396
E++ K A+W L N+ AG + V++AG +PK++ L ++Q A AL
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGAL 115
Query: 397 TNIAS 401
+N+AS
Sbjct: 116 SNLAS 120
Score = 78.9 bits (195), Expect = 2e-17
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V + +Q A + L S+ N I+A++ +G LP LV+ L+ D + A
Sbjct: 12 LVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAA 69
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159
WAL N+A+G V+ AG VP + LL S + ++ + A AL N+
Sbjct: 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
Score = 73.5 bits (181), Expect = 1e-15
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 706 QGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNM 765
+ Q+EAAWA+SNL+ +GN D + +V+ G +P LL +D +V++ L + N+
Sbjct: 18 SSDENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76
Query: 766 LKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
E ++ E GG+ K+ L + N +I K A + S
Sbjct: 77 AAG----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 68.1 bits (167), Expect = 1e-13
Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
Query: 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPALNIL 224
+ VI G +P L+S + + R W + NL + ++E LPAL L
Sbjct: 1 EAVIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQA--VVEAGGLPALVQL 57
Query: 225 IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284
+ D V +WAL L G D +V+++G
Sbjct: 58 LKSEDEEVVKA-------------------------ALWALRNLAAGPEDNKLIVLEAGG 92
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVT 312
VP L+ LL +Q + A+ N+ +
Sbjct: 93 VPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 59.3 bits (144), Expect = 1e-10
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 571 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630
G ++ Q ++ L LL E++ K A+W L N+ AG + V++AG +PK+
Sbjct: 37 GNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL 96
Query: 631 IANLQKRSCKILNKYLD 647
+ L + I
Sbjct: 97 VNLLDSSNEDIQKNATG 113
Score = 55.4 bits (134), Expect = 3e-09
Identities = 31/165 (18%), Positives = 49/165 (29%), Gaps = 47/165 (28%)
Query: 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPALNIL 507
+ VI G +P L+S + + R W + NL + ++E LPAL L
Sbjct: 1 EAVIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQA--VVEAGGLPALVQL 57
Query: 508 IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMC 567
+ D V K L L+
Sbjct: 58 LKSEDEEVV----------------------KAALWALRNLAAGP--------------- 80
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
++ ++L + LL E I K A LSN+ +
Sbjct: 81 -----EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
Score = 53.1 bits (128), Expect = 2e-08
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 577 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636
+ ++ L +LL+ E + +EA W LSN++AGN +QAV++AG LP ++ L+
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 637 RSCKI 641
++
Sbjct: 61 EDEEV 65
>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain. This family
consists of the importin alpha (karyopherin alpha),
importin beta (karyopherin beta) binding domain. The
domain mediates formation of the importin alpha beta
complex; required for classical NLS import of proteins
into the nucleus, through the nuclear pore complex and
across the nuclear envelope. Also in the alignment is
the NLS of importin alpha which overlaps with the IBB
domain.
Length = 97
Score = 75.1 bits (185), Expect = 2e-16
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNV--PLADSTD-EDDIEKMAQVNL----DMLVVEA 53
MRRRR EV VELRKNKREE L KRRNV P D + E +++ + + ++V+
Sbjct: 23 MRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSDADQLSLELPVMVQG 82
Query: 54 ARKDNPELQLLAVQS 68
D+PE QL A Q+
Sbjct: 83 VNSDDPENQLSATQA 97
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Approx. 40
amino acid repeat. Tandem repeats form super-helix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. CAUTION: This family does
not contain all known armadillo repeats.
Length = 41
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
+ Q V+ AGAVP ++LL SP V E+A WAL N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
+ Q V+ AGAVP ++LL SP V E+A WAL N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+A+I +G +P LV+ L S +Q EAAWAL+N+A+
Sbjct: 2 PENKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41
Score = 47.1 bits (113), Expect = 4e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 273 NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312
+ Q VI++G VP L+ LLS + +VQ + A+ N+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 314 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
+ E Q ++ A+ LL+ P E++ +EA W LSN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 572 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
+ E Q ++ A+ LL+ P E++ +EA W LSN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
Score = 40.5 bits (96), Expect = 6e-05
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401
+ QAVI+AG +P ++ L +Q EAAWAL+N+A+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSP-----DEEVQEEAAWALSNLAA 41
Score = 35.9 bits (84), Expect = 0.003
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203
P+ + VI G VPPL+ + W + NL
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLAA 41
Score = 35.9 bits (84), Expect = 0.003
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486
P+ + VI G VPPL+ + W + NL
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLAA 41
Score = 35.1 bits (82), Expect = 0.005
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 727 NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNM 765
+ + +++ G +PP LLS D +V + ++N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
Score = 27.0 bits (61), Expect = 4.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 709 FQTQKEAAWAISNLT 723
+ Q+EAAWA+SNL
Sbjct: 26 EEVQEEAAWALSNLA 40
Score = 26.3 bits (59), Expect = 7.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 614 NQAQVQAVIDAGLLPKIIANLQKRSCKIL 642
+ QAVI+AG +P ++ L ++
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQ 29
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats. Approx. 40
amino acid repeat. Tandem repeats form superhelix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. Involved in transducing
the Wingless/Wnt signal. In plakoglobin arm repeats bind
alpha-catenin and N-cadherin.
Length = 41
Score = 47.4 bits (114), Expect = 2e-07
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 77 KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+ +A++ +G LP LVE L+ D + EAAWAL+N++S
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41
Score = 47.0 bits (113), Expect = 3e-07
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
Q VV AG +P + LL S V ++A WAL N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
Score = 47.0 bits (113), Expect = 3e-07
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
Q VV AG +P + LL S V ++A WAL N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
Score = 46.3 bits (111), Expect = 5e-07
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 273 NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311
++ Q V+D+G +P+L+ LL ++ +V + A+ N+
Sbjct: 2 DENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
Score = 45.1 bits (108), Expect = 2e-06
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 314 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
DE Q +++ L LL E++ KEA W LSN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 45.1 bits (108), Expect = 2e-06
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 572 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
DE Q +++ L LL E++ KEA W LSN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
Score = 37.0 bits (87), Expect = 0.001
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401
+ QAV+DAG LP ++ L+ + EAAWAL+N++S
Sbjct: 1 DDENKQAVVDAGGLPALVELLK-----SEDEEVVKEAAWALSNLSS 41
Score = 34.7 bits (81), Expect = 0.008
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 727 NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNM 765
+ + +V G +P +LL +D +V++ ++N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
Score = 26.6 bits (60), Expect = 5.1
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203
+ + V++ G +P L+ +K + ++ W + NL
Sbjct: 2 DENKQAVVDAGGLPALVELLKSEDE-EVVKEAAWALSNLSS 41
Score = 26.6 bits (60), Expect = 5.1
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486
+ + V++ G +P L+ +K + ++ W + NL
Sbjct: 2 DENKQAVVDAGGLPALVELLKSEDE-EVVKEAAWALSNLSS 41
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 47.1 bits (112), Expect = 5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
++ AA AL +A G + V +P L LL V E A WALG I
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
Score = 47.1 bits (112), Expect = 5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
++ AA AL +A G + V +P L LL V E A WALG I
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
Score = 33.6 bits (77), Expect = 0.023
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI 310
AL L GG + ++ + ++P+L+PLL + +V+ A+ A+G I
Sbjct: 8 ALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
Score = 30.9 bits (70), Expect = 0.28
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352
V+ A+ A+G + G E + + + L LL +++ + A W L I
Sbjct: 3 VREAAALALGALAGGGPELLRPAVP-ELLPALLPLLKDDDDEVREAAAWALGRI 55
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 45.0 bits (107), Expect = 5e-06
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
L L+E L P ++ AA AL + A+P L LL P V
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRR 49
Query: 150 QAVWALGNI 158
A ALG +
Sbjct: 50 AAAEALGKL 58
Score = 35.8 bits (83), Expect = 0.011
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 25/112 (22%)
Query: 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNL 105
L+ L+ +PE++ A ++ + L LP L+E L+ D P +
Sbjct: 1 LEALLEALLSDPDPEVRAAAARA------------LGELGDPEALPALLELLKDPD-PEV 47
Query: 106 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC-EQAVWALG 156
+ AA AL + A+P L LL V A AL
Sbjct: 48 RRAAAEALGKLGD-----------PEALPALLELLQDDDDAVVRAAAASALA 88
Score = 35.0 bits (81), Expect = 0.018
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
P ++ AA AL + A+P L LL P V A ALG +
Sbjct: 14 PEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAAAEALGKL 58
Score = 28.1 bits (63), Expect = 4.6
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D +P+L+ LL + +V+ A+ A+G + G E +L LL +
Sbjct: 29 DPEALPALLELLKDPDPEVRRAAAEALGKL--GDPEALPALL---------ELLQDDDDA 77
Query: 341 ICKEAV 346
+ + A
Sbjct: 78 VVRAAA 83
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and
conversion].
Length = 335
Score = 38.0 bits (88), Expect = 0.019
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICK 343
VP L LLS ++ +V+ A+ A+G + G E ++ L E +
Sbjct: 75 AVPLLRELLSDEDPRVRDAAADALGEL--GDPEAVPPLV--------ELLENDENEGVRA 124
Query: 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403
A L + G++ + +++A L + +++ AA AL +
Sbjct: 125 AAARALGKL--GDERALDPLLEA--LQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176
Query: 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
E A+PL + LL ++V A ALG + + + D
Sbjct: 177 --GDPE-----AIPLLIELLEDEDADVRRAAASALGQLGSENVEAAD 216
Score = 30.7 bits (69), Expect = 3.3
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 21/119 (17%)
Query: 323 NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI 382
+ D + L+ A+ L+ + D ++ L+
Sbjct: 4 DADVVRSAAVLVLLSYGSEAAAALQALAELDDLILELAPEAADE-----LLKLLEDE--- 55
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
++ AA AL + S AVPL LL V + A ALG +
Sbjct: 56 --DLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAADALGEL 101
Score = 29.1 bits (65), Expect = 9.5
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 41/143 (28%)
Query: 65 AVQSARKLLSSDKNPPI-----EALIHSGI---LPVLVECLERSDRPNLQFEAAWALTNI 116
AV R+LLS D++P + +AL G +P LVE LE + ++ AA AL +
Sbjct: 75 AVPLLRELLS-DEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKL 133
Query: 117 ASGTSA-------QTQEVVAAG-------------------------AVPLFLRLLMSPH 144
+ Q ++ +A A+PL + LL
Sbjct: 134 GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDED 193
Query: 145 SNVCEQAVWALGNIIGDGPQLRD 167
++V A ALG + + + D
Sbjct: 194 ADVRRAAASALGQLGSENVEAAD 216
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 37.4 bits (87), Expect = 0.039
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 81 IEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 140
I ++ +G + L++ L + + +++ EAA AL ++S + Q + AG +P +
Sbjct: 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINAT 283
Query: 141 MSPHSNVC----------EQAVWALGNIIG 160
++P S E A+ AL NI G
Sbjct: 284 VAP-SKEFMQGEFAQALQENAMGALANICG 312
Score = 37.0 bits (86), Expect = 0.047
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 69 ARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV 128
A + L + A + +G + +LV+ L S + Q AA L + + +V+
Sbjct: 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLS-SGNSDAQANAASLLARLMMAFESSISKVL 228
Query: 129 AAGAVPLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
AGAV L+LL + +V +A AL + + + + + G +P L++
Sbjct: 229 DAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281
Score = 30.5 bits (69), Expect = 5.2
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421
A ++AG + I+ L G + Q AA L + + +V+ AGAV L+
Sbjct: 184 ATLEAGGV-DILVKLLSSGN----SDAQANAASLLARLMMAFESSISKVLDAGAVKQLLK 238
Query: 422 LLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 463
LL + +V +A AL + + + + + G +P L++
Sbjct: 239 LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNII 159
+PL L LL P V E A ALG +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALA 28
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNII 442
+PL L LL P V E A ALG +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALA 28
Score = 27.1 bits (61), Expect = 3.6
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 284 VVPSLIPLLSHKEVKVQTASLRAVGNIV 311
++P L+ LL+ + +V+ A+ A+G +
Sbjct: 1 LLPLLLELLNDPDPEVREAAAEALGALA 28
>gnl|CDD|221732 pfam12719, Cnd3, Nuclear condensing complex subunits, C-term
domain. The Cnd1-3 proteins are the three non-SMC
(structural maintenance of chromosomes) proteins that go
to make up the mitotic condensation complex along with
the two SMC protein families, XCAP-C and XCAP-E, (or in
the case of fission yeast, Cut3 and Cut14). The
five-member complex seems to be conserved from yeasts to
vertebrates. This domain is the C-terminal,
cysteine-rich domain of Cnd3. The complex shuttles
between the nucleus, during mitosis, and the cytoplasm
during the rest of the cycle. Thus this family is made
up of the C-termini of XCAP-Gs, Ycg1 and Ycs5 members.
Length = 302
Score = 32.6 bits (75), Expect = 0.67
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 29 LADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI 85
DED E + V+L ++ + ++PE+Q +A + KLL + + L+
Sbjct: 101 FDSEGDEDSTEDVDSVSLLKILYKFLDSEDPEVQAIAAEGLCKLLLAGRLTDEPDLL 157
>gnl|CDD|170047 PRK09687, PRK09687, putative lyase; Provisional.
Length = 280
Score = 30.9 bits (70), Expect = 2.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 114 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172
TN+ + + A+PL + LL P+ +V A +AL + D P +R+ + M
Sbjct: 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAM 200
Score = 30.9 bits (70), Expect = 2.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 397 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
TN+ + + A+PL + LL P+ +V A +AL + D P +R+ + M
Sbjct: 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAM 200
>gnl|CDD|218574 pfam05389, MecA, Negative regulator of genetic competence (MecA).
This family contains several bacterial MecA proteins.
The development of competence in Bacillus subtilis is
regulated by growth conditions and several regulatory
genes. In complex media competence development is poor,
and there is little or no expression of late competence
genes. Mec mutations permit competence development and
late competence gene expression in complex media,
bypassing the requirements for many of the competence
regulatory genes. The mecA gene product acts negatively
in the development of competence. Null mutations in mecA
allow expression of a late competence gene comG, under
conditions where it is not normally expressed, including
in complex media and in cells mutant for several
competence regulatory genes. Overexpression of MecA
inhibits comG transcription.
Length = 212
Score = 30.2 bits (69), Expect = 3.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 14/56 (25%)
Query: 785 GLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDNL---GP---QVT--DGGFEL 832
G+ + ++L N E +E + Y +++ EV++E GP QVT G E+
Sbjct: 24 GITREDLLGNREKIE--EFFYSMMD----EVDEEHGFALDGPLTFQVTPNPQGLEV 73
>gnl|CDD|176111 cd08419, PBP2_CbbR_RubisCO_like, The C-terminal substrate binding
of LysR-type transcriptional regulator (CbbR) of
RubisCO operon, which is involved in the carbon dioxide
fixation, contains the type 2 periplasmic binding fold.
CbbR, a LysR-type transcriptional regulator, is
required to activate expression of RubisCO, one of two
unique enzymes in the Calvin-Benson-Bassham (CBB) cycle
pathway. All plants, cyanobacteria, and many
autotrophic bacteria use the CBB cycle to fix carbon
dioxide. Thus, this cycle plays an essential role in
assimilating CO2 into organic carbon on earth. The key
CBB cycle enzyme is ribulose 1,5-bisphosphate
carboxylase/oxygenase (RubisCO), which catalyzes the
actual CO2 fixation reaction. The CO2 concentration
affects the expression of RubisCO genes. It has also
shown that NADPH enhances the DNA-binding ability of
the CbbR. RubisCO is composed of eight large (CbbL) and
eight small subunits (CbbS). The topology of this
substrate-binding domain is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 197
Score = 30.2 bits (69), Expect = 3.7
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPEL 61
RR V V LR RE+ L++ LAD+ EDD+ M + D+ +V DNP
Sbjct: 22 CRRHPGVEVSLRVGNREQVLER-----LADN--EDDLAIMGRPPEDLDLVAEPFLDNP-- 72
Query: 62 QLLAVQSARKLLSSDKNPPIEAL 84
L+ + L+ K P+E L
Sbjct: 73 -LVVIAPPDHPLAGQKRIPLERL 94
>gnl|CDD|183581 PRK12542, PRK12542, RNA polymerase sigma factor; Provisional.
Length = 185
Score = 29.6 bits (66), Expect = 4.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 1 MRRRRNEVTVELRKNKREETL---QKRRNVPLADSTDED-DIEKMAQVNLDMLVVE 52
+R +N+ RKNKR ET +R ++ D E+ + KM++V +D L+ E
Sbjct: 67 LRVAKNKAIDSYRKNKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDTLLKE 122
>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and
modification].
Length = 975
Score = 30.7 bits (69), Expect = 4.2
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 30/123 (24%)
Query: 208 PPSMSTIIELL--PALNILIHHHDTSVSI------------------YLWLSIIEKNPQI 247
+STI++LL ++ I D S+ L+ ++ E P++
Sbjct: 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEV 662
Query: 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAV 307
++ + + +Q I SG++PSL P+L +K KV ++ V
Sbjct: 663 LGSILKAICSIYSVH---------RFRSMQPPI-SGILPSLTPILRNKHQKVVANTIALV 712
Query: 308 GNI 310
G I
Sbjct: 713 GTI 715
>gnl|CDD|227624 COG5308, NUP170, Nuclear pore complex subunit [Intracellular
trafficking and secretion].
Length = 1263
Score = 30.3 bits (68), Expect = 5.3
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 721 NLTISGNRDQVAKLVQEGVIPPFC---DLL------SCKDAQVIQVVLDGINNMLKMADA 771
N+ G+ + + K + E FC D+L A+ +V L+ +NN LK A
Sbjct: 764 NIQSGGSIEYLIKTLSERC-GSFCSAEDVLYFRALEHLNKAKSREVDLESLNNHLKNAVQ 822
Query: 772 QVETLANMIEECG 784
E+L E G
Sbjct: 823 LNESLVAKYNEEG 835
>gnl|CDD|221513 pfam12296, HsbA, Hydrophobic surface binding protein A. This
protein is found in eukaryotes. Proteins in this family
are typically between 171 to 275 amino acids in length.
Although the HsbA amino acid sequence suggests that HsbA
may be hydrophilic, HsbA adsorbed to hydrophobic PBSA
(Polybutylene succinate-co-adipate) surfaces in the
presence of NaCl or CaCl2. When HsbA was adsorbed on the
hydrophobic PBSA surfaces, it promoted PBSA degradation
via the CutL1 polyesterase. CutL1 interacts directly
with HsbA attached to the hydrophobic QCM electrode
surface. These results suggest that when HsbA is
adsorbed onto the PBSA surface, it recruits CutL1, and
that when CutL1 is accumulated on the PBSA surface, it
stimulates PBSA degradation.
Length = 124
Score = 28.4 bits (64), Expect = 8.1
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPAL-LTHPKEKICKEAVWFLSNITAGNQAQVQA 362
L A +++ + T LS +L L + + + + L + A +
Sbjct: 38 LSASTTLISAIKQATTDAQASAPLSDEESLALLAAVQTLTPQILDALDALIA----KKPL 93
Query: 363 VIDAGLLPKIIANLQK 378
AGL ++A+LQK
Sbjct: 94 FDAAGLGSTVLASLQK 109
>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP). This family
consists of several eukaryotic kinesin-associated (KAP)
proteins. Kinesins are intracellular multimeric
transport motor proteins that move cellular cargo on
microtubule tracks. It has been shown that the sea
urchin KRP85/95 holoenzyme associates with a KAP115
non-motor protein, forming a heterotrimeric complex in
vitro, called the Kinesin-II.
Length = 708
Score = 29.4 bits (66), Expect = 8.8
Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 22/186 (11%)
Query: 6 NEVTVELRKNK--REETLQKRRNV---PLADSTDEDDIEKMAQVNLDMLVVEAARKDNPE 60
N + EL++ + EE +K++ P+ E+ ++K+ +K +
Sbjct: 211 NVIEHELKRYEFWIEELDKKKKMNEEKPILKKDYEETLKKLKG---------LIKK---Q 258
Query: 61 LQLLAVQSARKLLSSDKNPPIE-ALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
QLL V + LL+ ++ +E + I+ +LV+ L+R + L ++ S
Sbjct: 259 EQLLRV-AFYLLLNLAEDIKVELKMRRKNIVALLVKALDRDNSELLILVVSFLKK--LSI 315
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
E+ G + L+L H ++ + L N+ D LR ++N G++P L+
Sbjct: 316 FDENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDT-GLRPKMVNGGLLPKLV 374
Query: 180 SFIKPD 185
S + D
Sbjct: 375 SLLDND 380
>gnl|CDD|129513 TIGR00419, tim, triosephosphate isomerase. Triosephosphate
isomerase (tim/TPIA) is the glycolytic enzyme that
catalyzes the reversible interconversion of
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate. The active site of the enzyme is located
between residues 240-258 of the model
([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the
active site residue. There is a slight deviation from
this sequence within the archeal members of this family
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 205
Score = 29.0 bits (65), Expect = 8.9
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 717 WAISNLTISGNRDQVAKLVQE---------GVIPPFCDLLSCKDAQVIQVVLDGINNMLK 767
W N + +VAK+ +E V PPF DL K I V ++ +L
Sbjct: 6 WKTYNESRGMRALEVAKIAEEVASEAGVAVAVAPPFVDLPMIKREVEIPVYAQHVDAVLS 65
Query: 768 MADAQVETLANMIEECG 784
A E A M+++ G
Sbjct: 66 GAHTG-EISAEMLKDIG 81
>gnl|CDD|204897 pfam12380, Peptidase_C62, Gill-associated viral 3C-like peptidase.
a positive-stranded RNA virus of prawns, that has been
called yellow head virus protease and gill-associated
virus 3C-like peptidase. The GAV cysteine protease is
predicted to be the key enzyme in the processing of the
GAV replicase polyprotein precursors, pp1a and pp1ab.
This protease employs a Cys(2968)-His(2879) catalytic
dyad.
Length = 284
Score = 29.2 bits (65), Expect = 9.7
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 597 EKICKEAVWFLSNITAGNQA--QVQAVI-DAGLLPKIIANLQKRSCKILNKYLDNNNMV 652
EK+ VW + ITA + Q+ V DA PK+ N Q C+ L++Y++ N+V
Sbjct: 196 EKVDPPKVWPVEPITALSTILNQLNYVTGDAFTTPKLPTNYQLIGCETLDQYVNACNLV 254
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0877 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 43,492,196
Number of extensions: 4369671
Number of successful extensions: 4078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3995
Number of HSP's successfully gapped: 87
Length of query: 845
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 740
Effective length of database: 6,280,432
Effective search space: 4647519680
Effective search space used: 4647519680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.8 bits)