RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12605
(845 letters)
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 419 bits (1078), Expect = e-138
Identities = 186/463 (40%), Positives = 250/463 (53%), Gaps = 45/463 (9%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV---------- 50
+RRRR+ VELRK KR+E L KRRN + D E + V+ D
Sbjct: 32 LRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 91
Query: 51 -VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+ D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EA
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+ + P+L + S +R TW + NLCR K P P S + + LP L LI+ D
Sbjct: 212 LQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270
Query: 230 TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289
T + LVD WA+SYL+DG + IQ VID + L+
Sbjct: 271 T-------------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305
Query: 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFL 349
LLSH+ VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +
Sbjct: 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365
Query: 350 SNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG---TSAQ 406
SNITAGN Q+QAVIDA L+P ++ L+ + EA WA++N +SG
Sbjct: 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-----EYKTKKEACWAISNASSGGLQRPDI 420
Query: 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449
+ +V+ G + LL + + E + AL NI+ G +
Sbjct: 421 IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463
Score = 316 bits (812), Expect = 1e-98
Identities = 162/536 (30%), Positives = 234/536 (43%), Gaps = 101/536 (18%)
Query: 314 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKI 372
+ +Q L L + A I + ++ + VI AG++P++
Sbjct: 76 SADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRL 135
Query: 373 IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 432
+ +++ LQ EAAWALTNIASGTSAQT+ VV A AVPLF++LL + V E
Sbjct: 136 VEFMRENQP----EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191
Query: 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 492
QA+WALGN+ GD RDYV+ + P+L + S +R TW + NLCR K P P
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQP 250
Query: 493 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNS 552
S + + LP L LI+ DT + C + YLS
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTET---------------------LVDACWA-ISYLSD-- 286
Query: 553 GPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
G E Q +++ LL+H + A+ + NI
Sbjct: 287 ------------------GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328
Query: 613 GNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQ 665
GN Q Q VI+AG+LP + N++K +C ++ N+ N +V
Sbjct: 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS------NITAGNTEQIQAVIDA 382
Query: 666 NVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTIS 725
N+ ++ E++T+KEA WAISN +
Sbjct: 383 NLIPPLV-----------------------------KLLEVAEYKTKKEACWAISNASSG 413
Query: 726 G--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVET-------L 776
G D + LV +G I P CDLL D ++I+V LD + N+LKM +A E
Sbjct: 414 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINEN 473
Query: 777 ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED--NLGPQVTDGGF 830
A+ IE+ GG++KI Q +EN +IY+ AY IIE YF E ED + PQ F
Sbjct: 474 ADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTF 529
Score = 153 bits (388), Expect = 1e-39
Identities = 62/341 (18%), Positives = 126/341 (36%), Gaps = 43/341 (12%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
++ + E++ A+ + + + D + ++ + ++ S++P+L A
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNV-AGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTAT 236
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
W L+N+ G Q V + A+P +L+ S + A WA+ + + VI
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296
Query: 171 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 230
++ + L+ + + + N+ D + +LPAL +L+
Sbjct: 297 DVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355
Query: 231 SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290
+ I + W +S +T G +QIQ VID+ ++P L+
Sbjct: 356 N-------------------------IKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 390
Query: 291 LLSHKEVKVQTASLRAVGNIVTGTD---EQTQVILNCDALSHFPALLTHPKEKICKEAVW 347
LL E K + + A+ N +G + + +++ + LL +I + +
Sbjct: 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLD 450
Query: 348 FLSNI-----------TAGNQAQVQAVIDAGLLPKIIANLQ 377
L NI + AG + KI N Q
Sbjct: 451 ALENILKMGEADKEARGLNINENADFIEKAGGMEKIF-NCQ 490
Score = 129 bits (326), Expect = 1e-31
Identities = 58/295 (19%), Positives = 104/295 (35%), Gaps = 45/295 (15%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
L K P + + S LP L + + D +A WA++ ++ G Q V+
Sbjct: 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQEAIQAVIDVRI 300
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 192
+ LL + V A+ A+GNI+ VIN GV+P L + + +
Sbjct: 301 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE-NIKK 359
Query: 193 NVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250
W I N+ + +I+ L+P L L+ +
Sbjct: 360 EACWTISNITA--GNTEQIQAVIDANLIPPLVKLLEVAE--------------------- 396
Query: 251 LVSKMKILVDTVWALSYLTDGGN---DQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAV 307
K + WA+S + GG D I+ ++ G + L LL + ++ +L A+
Sbjct: 397 ----YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452
Query: 308 GNIV-----------TGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351
NI+ +E I + + +KI ++A +
Sbjct: 453 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 405 bits (1041), Expect = e-133
Identities = 188/475 (39%), Positives = 267/475 (56%), Gaps = 44/475 (9%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV---VEAARKD 57
R E K E ++ D Q ++ V V+ +
Sbjct: 10 GLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSN 69
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+AWALTNIA
Sbjct: 70 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 129
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + P
Sbjct: 130 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDP 189
Query: 178 LLSFIK----PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 233
LL+ + + +LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 190 LLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--- 246
Query: 234 IYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293
++L D+ WA+SYLTDG N++I+MV+ GVVP L+ LL
Sbjct: 247 ----------------------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284
Query: 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353
E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SNIT
Sbjct: 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
Query: 354 AGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVA 412
AG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT Q +V
Sbjct: 345 AGRQDQIQQVVNHGLVPFLVGVLSKA-----DFKTQKEAAWAITNYTSGGTVEQIVYLVH 399
Query: 413 AGAVPLFLRLLMSPHSNVCEQAVWALGNI------IGDGPQLRDYVINMGVVPPL 461
G + + LL + + + + + A+ NI +G+ +L + G + +
Sbjct: 400 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454
Score = 329 bits (845), Expect = e-104
Identities = 174/558 (31%), Positives = 257/558 (46%), Gaps = 97/558 (17%)
Query: 303 SLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ-VQ 361
L + D + ++ + + +A + + + +
Sbjct: 35 DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94
Query: 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421
+I AGL+PK ++ L K +QFE+AWALTNIASGTS QT+ VV GA+P F+
Sbjct: 95 NIIRAGLIPKFVSFLGKTDC----SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 422 LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK----PDIPISFLRNV 477
LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + + +LRN+
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 478 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 537
TW + NLCRNK+P P + + ++LP L L+HH+D V
Sbjct: 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV---------------------L 249
Query: 538 MKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE 597
C + YL+ G +E+ ++++ + LL +
Sbjct: 250 ADSCWA-ISYLTD--------------------GPNERIEMVVKKGVVPQLVKLLGATEL 288
Query: 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNN 650
I A+ + NI G Q Q VIDAG L + N+QK + ++ N
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS------N 342
Query: 651 MVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQ 710
+ V + ++ + +F+
Sbjct: 343 ITAGRQDQIQQVVNHGLVPFLV-----------------------------GVLSKADFK 373
Query: 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD 770
TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A+
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Query: 771 --AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVTD 827
+ E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS 493
Query: 828 GGFELDQNPSIPNEGFKF 845
GF F F
Sbjct: 494 EGFAFQVQDG-APGTFNF 510
Score = 186 bits (474), Expect = 3e-51
Identities = 89/407 (21%), Positives = 155/407 (38%), Gaps = 20/407 (4%)
Query: 261 TVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQ 319
T A L+ I +I +G++P + L + +Q S A+ NI +GT EQT+
Sbjct: 78 TQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137
Query: 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379
+++ A+ F +LL P I ++AVW L NI A VI G + ++A L
Sbjct: 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197
Query: 380 GRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439
L W L+N+ + +P +RLL V + WA+
Sbjct: 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 440 NIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 498
+ + + V+ GVVP L+ + ++PI + I N+ D
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPI--VTPALRAIGNIVTGTDEQTQKVIDA 315
Query: 499 ELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMS 556
L L+ + T++ W +S I Q V + + + + +
Sbjct: 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKT 374
Query: 557 CQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI------ 610
++ +I S GT EQ +++C + LL+ KI + + +SNI
Sbjct: 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434
Query: 611 TAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNN 650
+ + + G L KI A ++ K S ++ KY
Sbjct: 435 LGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481
Score = 143 bits (362), Expect = 2e-36
Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 34/301 (11%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
L +KNP ILP LV L +D P + ++ WA++ + G + + + VV G
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGV 275
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 192
VP ++LL + + A+ A+GNI+ + VI+ G + S + + +
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT-NIQK 334
Query: 193 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252
TW + N+ + L+P L ++ D
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF---------------------- 372
Query: 253 SKMKILVDTVWALSYLTDGG-NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI- 310
K + WA++ T GG +QI ++ G++ L+ LLS K+ K+ L A+ NI
Sbjct: 373 ---KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429
Query: 311 -----VTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365
+ T++ + +I C L AL H E + K ++ + + + + Q V+
Sbjct: 430 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 489
Query: 366 A 366
Sbjct: 490 E 490
Score = 128 bits (322), Expect = 3e-31
Identities = 62/290 (21%), Positives = 114/290 (39%), Gaps = 37/290 (12%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+V ++PE+ + + L + N IE ++ G++P LV+ L + +
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTP 293
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168
A A+ NI +GT QTQ+V+ AGA+ +F LL +P +N+ ++A W + NI
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIH 226
V+N G+VP L+ + + W I N + ++ ++ L L+
Sbjct: 354 VVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVE-QIVYLVHCGIIEPLMNLLS 411
Query: 227 HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG------NDQIQMVI 280
DT KI+ + A+S + M+
Sbjct: 412 AKDT-------------------------KIIQVILDAISNIFQAAEKLGETEKLSIMIE 446
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF 330
+ G + + L H+ V ASL + + +E+ Q ++ F
Sbjct: 447 ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGF 496
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 378 bits (971), Expect = e-123
Identities = 184/440 (41%), Positives = 244/440 (55%), Gaps = 35/440 (7%)
Query: 29 LADSTDEDDIEKMAQVNLDM-LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI-H 86
+ + + +MA + ++E +PE QL A Q RKLLS + NPPI+ +I
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
G++ VE L+R + LQFE+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
V EQAVWALGNI GD RDYV++ ++PPLL ++ RN W + NLCR K
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182
Query: 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266
PPP + + L L+ L+ D +L D WALS
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSD-------------------------TDVLADACWALS 217
Query: 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326
YL+DG ND+IQ VID+GV L+ LL H + KV + +LRAVGNIVTG D QTQVILNC A
Sbjct: 218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA 277
Query: 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP 386
L LL+ PKE I KEA W +SNITAGN+AQ+Q VIDA + P +I+ LQ
Sbjct: 278 LQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-----EF 332
Query: 387 NLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
+ EAAWA+TN S G++ Q + +V G + LL S + + A+ L NI+ G
Sbjct: 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392
Query: 446 PQLRDYVINMGVVPPLLSFI 465
Q N + P + I
Sbjct: 393 EQEAK--RNGTGINPYCALI 410
Score = 314 bits (805), Expect = 8e-99
Identities = 148/524 (28%), Positives = 232/524 (44%), Gaps = 97/524 (18%)
Query: 313 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI-TAGNQAQVQAVI-DAGLLP 370
++ S ++ + A + + + VI G++
Sbjct: 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNV 430
+ + L++ LQFE+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +V
Sbjct: 68 RFVEFLKRKEN----CTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123
Query: 431 CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 490
EQAVWALGNI GD RDYV++ ++PPLL ++ RN W + NLCR K P
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183
Query: 491 PPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSH 550
PP + + L L+ L+ DT V C L YLS
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDV---------------------LADACWA-LSYLSD 221
Query: 551 NSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 610
G +++ Q +++ LL H K+ A+ + NI
Sbjct: 222 --------------------GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261
Query: 611 TAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNNMVLHNVLLQMSVF 663
G+ Q Q +++ L ++ +++K +C ++ N+ N +V
Sbjct: 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS------NITAGNRAQIQTVI 315
Query: 664 LQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723
N+ +I EF+T+KEAAWAI+N T
Sbjct: 316 DANIFPALI-----------------------------SILQTAEFRTRKEAAWAITNAT 346
Query: 724 ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD-------AQVETL 776
G+ +Q+ LV+ G I P CDLL+ D++++QV L+G+ N+L++ + +
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPY 406
Query: 777 ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDN 820
+IEE GLDKIE LQ+HEN EIY+ A+D+IE YF +++ +
Sbjct: 407 CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSS 450
Score = 175 bits (446), Expect = 7e-48
Identities = 84/402 (20%), Positives = 153/402 (38%), Gaps = 32/402 (7%)
Query: 268 LTDGGNDQIQMVI-DSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325
L+ N I VI GVV + L + +Q S + NI +G QT++++
Sbjct: 48 LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107
Query: 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR 385
A+ F LL+ E + ++AVW L NI + V+D +LP ++ K R+ +
Sbjct: 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
N A WAL+N+ G S + + + + LL ++V A WAL +
Sbjct: 168 RN----AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223
Query: 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 505
VI+ GV L+ + + + + N+ D + L +L
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282
Query: 506 ILIHHHDTSV---SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQH 562
L+ S+ + + +I N + ++ + L + + + ++
Sbjct: 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA--LISILQTAEFRTRKEAAW 340
Query: 563 SIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI-----------T 611
+I S G+ EQ + ++ + LLT KI + A+ L NI
Sbjct: 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400
Query: 612 AGNQAQVQAVIDAGLLPKIIANLQ--------KRSCKILNKY 645
G + +A L KI LQ +++ ++ Y
Sbjct: 401 TGINPYCALIEEAYGLDKIE-FLQSHENQEIYQKAFDLIEHY 441
Score = 119 bits (300), Expect = 8e-29
Identities = 52/272 (19%), Positives = 101/272 (37%), Gaps = 20/272 (7%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
++ + ++ A + L S N I+A+I +G+ LVE L + +
Sbjct: 196 VLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSP 253
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168
A A+ NI +G QTQ ++ A+ L LL SP ++ ++A W + NI
Sbjct: 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT 313
Query: 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIH 226
VI+ + P L+S ++ + W I N + ++E + L L+
Sbjct: 314 VIDANIFPALISILQ-TAEFRTRKEAAWAITNATSGGSAE-QIKYLVELGCIKPLCDLLT 371
Query: 227 HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286
D+ + + L IL G N ++ ++ +
Sbjct: 372 VMDSKI--------------VQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLD 417
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318
+ L SH+ ++ + + + DE +
Sbjct: 418 KIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
Score = 30.6 bits (69), Expect = 2.3
Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 725 SGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECG 784
+ + + +++ K + +L + +I G
Sbjct: 7 EAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPN--PPIDEVISTPG 64
Query: 785 GLDK-IEMLQNHENVEIYKLAYDII 808
+ + +E L+ EN + + ++
Sbjct: 65 VVARFVEFLKRKENCTLQFESAWVL 89
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 262 bits (672), Expect = 2e-78
Identities = 81/517 (15%), Positives = 162/517 (31%), Gaps = 77/517 (14%)
Query: 32 STDEDDIEKMAQVN--LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI 89
S E + + + +V ++ E LS + A+ SG
Sbjct: 45 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG-TLHNLSHHREGL-LAIFKSGG 102
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+P LV+ L S ++ F A L N+ V AG + + LL +
Sbjct: 103 IPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
L + + + ++ G L++ ++ L + V+ L P
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 210 SMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSY 267
+ I+E + AL + + + + + +W L
Sbjct: 222 A---IVEAGGMQALGLHLTDPSQRL-------------------------VQNCLWTLRN 253
Query: 268 LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327
L+D Q M G++ +L+ LL ++ V T + + N+ + ++ +
Sbjct: 254 LSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
Query: 328 SHFPALL--THPKEKICKEAVWFLSNITAGNQ---AQVQAVIDAGLLPKIIANLQKVGRI 382
+ +E I + A+ L ++T+ +Q AV LP ++ L
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442
L +A L + A + GA+P ++LL+ H + +
Sbjct: 371 PLI-----KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425
Query: 443 GDG---------------------PQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWV 480
R + + +P + + P I R V
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI--QRVAAGV 483
Query: 481 IVNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSV 515
+ L ++K+ + I L L+H + V
Sbjct: 484 LCELAQDKE---AAEAIEAEGATAPLTELLHSRNEGV 517
Score = 230 bits (587), Expect = 2e-66
Identities = 71/561 (12%), Positives = 158/561 (28%), Gaps = 98/561 (17%)
Query: 268 LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327
+ + N Q + + +P L LL+ ++ V + V + + ++ + +
Sbjct: 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61
Query: 328 SHFPALLTHPKE-KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP 386
S + + + + + L N+ + ++ + A+ +G +P ++ L
Sbjct: 62 SAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPV-----D 115
Query: 387 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446
++ F A L N+ V AG + + LL + L +
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175
Query: 447 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPAL 504
+ + ++ G L++ ++ L + V+ L P+ I+E + AL
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQAL 232
Query: 505 NILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI 564
+ + + ++ C L LS
Sbjct: 233 GLHLTDPSQRL----------------------VQNCLWTLRNLS--------------- 255
Query: 565 YMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 624
D T+ L LL + A LSN+T N V
Sbjct: 256 --------DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 625 GLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRV 684
G + ++ + + + + + + +E + + V
Sbjct: 308 GGIEALVRTVLRAG---------DREDITEPAICALRHLTSRHQEAEMAQNA-------V 351
Query: 685 AATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFC 744
G L + +A + ++ A L ++G IP
Sbjct: 352 RLHYG--LPVVVKLLH-----PPSHWPLIKATVGLIRN-LALCPANHAPLREQGAIPRLV 403
Query: 745 DLLSCKDAQVIQVVLDGINNMLKMADAQVE--------TLANM---------IEECGGLD 787
LL + G + ++E L + I +
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463
Query: 788 KIEMLQNHENVEIYKLAYDII 808
L I ++A ++
Sbjct: 464 LFVQLLYSPIENIQRVAAGVL 484
Score = 223 bits (570), Expect = 4e-64
Identities = 82/572 (14%), Positives = 190/572 (33%), Gaps = 69/572 (12%)
Query: 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137
N +A + + +P L + L + + +AA + ++ +++ + + V +
Sbjct: 7 NYQDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65
Query: 138 RLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
R + + + L N+ + + G +P L+ + + S L
Sbjct: 66 RTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVD-SVLFYAIT 123
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 256
+ NL +++ + L + L++ + +K
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------------VK 158
Query: 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316
L T L L G + +++ SG +L+ ++ + + V +++
Sbjct: 159 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218
Query: 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 376
I+ + LT P +++ + +W L N++ Q GLL ++ L
Sbjct: 219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLL 275
Query: 377 QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN--VCEQA 434
N+ AA L+N+ V G + +R ++ + E A
Sbjct: 276 GSDD-----INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330
Query: 435 VWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 491
+ AL ++ + ++ V +P ++ + P ++ +I NL
Sbjct: 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-- 388
Query: 492 PSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLS 549
+ + + E +P L L+ + ++ + ++ C+ L+ L+
Sbjct: 389 -NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447
Query: 550 HNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609
+ VI + + F LL P E I + A L
Sbjct: 448 RD---------------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486
Query: 610 ITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641
+ A ++ +A+ G + L R+ +
Sbjct: 487 L-AQDKEAAEAIEAEGATAPLTELLHSRNEGV 517
Score = 192 bits (489), Expect = 6e-53
Identities = 75/555 (13%), Positives = 162/555 (29%), Gaps = 71/555 (12%)
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQV 320
+ L+ + ++ +V +++ + + +V+ + + N+ + E
Sbjct: 38 AVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLA 96
Query: 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVG 380
I + +L P + + A+ L N+ + AV AG L K++A L K
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-- 154
Query: 381 RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440
L +A G ++A+G + ++ + +
Sbjct: 155 ---TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 441 IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL 500
++ + ++ G + L + D ++N W + NL D + L
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLWTLRNLS---DAATKQEGMEGL 267
Query: 501 LPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558
L L L+ D +V LS + N +K++V ++ + +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327
Query: 559 KKQHSIYMCVSPGTDE---QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 615
+ ++ E + L LL P +A L A
Sbjct: 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387
Query: 616 AQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSS 675
A + + G +P+++ L + + ++M
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME-------------- 433
Query: 676 FQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLV 735
+ + A+ L + + +
Sbjct: 434 ----------------------------------EIVEGCTGALHIL--ARDVHNRIVIR 457
Query: 736 QEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH 795
IP F LL + +V + + AQ + A IE G + L +
Sbjct: 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCEL-----AQDKEAAEAIEAEGATAPLTELLHS 512
Query: 796 ENVEIYKLAYDIIER 810
N + A ++ R
Sbjct: 513 RNEGVATYAAAVLFR 527
Score = 168 bits (428), Expect = 8e-45
Identities = 71/524 (13%), Positives = 148/524 (28%), Gaps = 104/524 (19%)
Query: 306 AVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365
AV N++ + Q L A+ LL + + +A + ++ ++ +
Sbjct: 1 AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425
++ I+ +Q A L N+ S + +G +P +++L S
Sbjct: 58 PQMVSAIVRTMQNTND----VETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGS 112
Query: 426 PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485
P +V A+ L N++ + V G + +++ + FL T + L
Sbjct: 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILA 171
Query: 486 RNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSR 543
S I+ AL ++ + + SR
Sbjct: 172 YGN--QESKLIILASGGPQALVNIMRTYTYE---------------------KLLWTTSR 208
Query: 544 YLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 603
L LS I+ + LT P +++ +
Sbjct: 209 VLKVLSVC---------------------SSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 604 VWFLSNITAGNQAQVQAVIDAGLLPKII-------ANLQKRSCKILNKYLDNNNMVLHNV 656
+W L N++ Q GLL ++ N+ + IL+ N+ +N
Sbjct: 248 LWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILS------NLTCNNY 298
Query: 657 LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716
+M V E ++ + + + A
Sbjct: 299 KNKMMVCQVGGIEALV---------------------------RTVLRAGDREDITEPAI 331
Query: 717 WAISNLTISG--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVE 774
A+ +LT + +P LL + G+ L + A
Sbjct: 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 391
Query: 775 TLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDE 818
+ E G + ++ L + + + +
Sbjct: 392 ----PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431
Score = 148 bits (374), Expect = 8e-38
Identities = 58/373 (15%), Positives = 104/373 (27%), Gaps = 57/373 (15%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V R E L K+LS A++ +G + L L L
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCL 248
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
W L N++ T++ G + ++LL S NV A L N+ + + + V
Sbjct: 249 WTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305
Query: 171 NMGVVPPLLSFIKPDIPISFLR-NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+G + L+ + + + +L + L L +++
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV---- 361
Query: 230 TSVSIYLWLSIIEKNPQISKILVS-KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288
K+L L+ L + + G +P L
Sbjct: 362 -------------------KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 289 IPLLSHKEVKVQTASLRAVGNIVTGT---------------------DEQTQVILNCDAL 327
+ LL Q + VI + +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPN 387
F LL P E I + A L + A ++ +A+ G + L
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLT-ELLHSRN----EG 516
Query: 388 LQFEAAWALTNIA 400
+ AA L ++
Sbjct: 517 VATYAAAVLFRMS 529
Score = 129 bits (327), Expect = 8e-32
Identities = 50/329 (15%), Positives = 103/329 (31%), Gaps = 20/329 (6%)
Query: 32 STDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILP 91
S + + + + + L + + R L + G+L
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLG 269
Query: 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN--VCE 149
LV+ L D N+ AA L+N+ V G + +R ++ + E
Sbjct: 270 TLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328
Query: 150 QAVWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
A+ AL ++ + ++ V +P ++ + P ++ +I NL
Sbjct: 329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388
Query: 207 PPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264
+ + + E +P L L+ + + Q V +I+ A
Sbjct: 389 ---NHAPLREQGAIPRLVQLLVRAHQDT---QRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
L L ++ +P + LL +Q + + + E + I
Sbjct: 443 LHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAE 500
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNIT 353
A + LL E + A L ++
Sbjct: 501 GATAPLTELLHSRNEGVATYAAAVLFRMS 529
Score = 70.2 bits (172), Expect = 1e-12
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 6/132 (4%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +D + + VE R E+ + L N +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVR--MEEIVEGCTGALHILARDVHN--RIVIRG 458
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+P+ V+ L S N+Q AA L +A + + A GA LL S +
Sbjct: 459 LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG 516
Query: 147 VCEQAVWALGNI 158
V A L +
Sbjct: 517 VATYAAAVLFRM 528
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 259 bits (664), Expect = 3e-76
Identities = 80/516 (15%), Positives = 162/516 (31%), Gaps = 75/516 (14%)
Query: 32 STDEDDIEKMAQVN--LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI 89
S E + + + +V ++ E LS + A+ SG
Sbjct: 42 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG-TLHNLSHHREGL-LAIFKSGG 99
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+P LV+ L S ++ F A L N+ V AG + + LL +
Sbjct: 100 IPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
L + + + ++ G L++ ++ L + V+ L P
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218
Query: 210 SMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSY 267
I+E + AL + + + + + +W L
Sbjct: 219 ---AIVEAGGMQALGLHLTDPSQRL-------------------------VQNCLWTLRN 250
Query: 268 LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327
L+D Q G++ +L+ LL ++ V T + + N+ + ++ +
Sbjct: 251 LSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
Query: 328 SHFPALL--THPKEKICKEAVWFLSNITAGNQ---AQVQAVIDAGLLPKIIANLQKVGRI 382
+ +E I + A+ L ++T+ +Q AV LP ++ L
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN-- 440
L +A L + A + GA+P ++LL+ H + +
Sbjct: 368 PLI-----KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422
Query: 441 -------------------IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 481
I+ R + + +P + + I + R V+
Sbjct: 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVL 481
Query: 482 VNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSV 515
L ++K+ + I L L+H + V
Sbjct: 482 CELAQDKE---AAEAIEAEGATAPLTELLHSRNEGV 514
Score = 247 bits (633), Expect = 7e-72
Identities = 81/589 (13%), Positives = 192/589 (32%), Gaps = 76/589 (12%)
Query: 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137
N +A + + +P L + L + + +AA + ++ +++ + + V +
Sbjct: 4 NYQDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62
Query: 138 RLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
R + + + L N+ + + G +P L+ + + S L
Sbjct: 63 RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAIT 120
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 256
+ NL +++ + L + L++ +
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF------------------------ 156
Query: 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316
L T L L G + +++ SG +L+ ++ + + V +++
Sbjct: 157 -LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215
Query: 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 376
I+ + LT P +++ + +W L N++ + GLL ++ L
Sbjct: 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLL 272
Query: 377 QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN--VCEQA 434
N+ AA L+N+ V G + +R ++ + E A
Sbjct: 273 GSDD-----INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327
Query: 435 VWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 491
+ AL ++ + ++ V +P ++ + P ++ +I NL P
Sbjct: 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC---P 384
Query: 492 PSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLS 549
+ + + E +P L L+ + ++ + ++ C+ L+ L+
Sbjct: 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 444
Query: 550 HNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609
+ VI + + F LL P E I + A L
Sbjct: 445 RD---------------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483
Query: 610 ITAGNQAQVQAVIDAGLLPKIIANL-------QKRSCKILNKYLDNNNM 651
+ A ++ +A+ G + L + +L + ++
Sbjct: 484 L-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 531
Score = 193 bits (491), Expect = 2e-52
Identities = 84/610 (13%), Positives = 195/610 (31%), Gaps = 39/610 (6%)
Query: 245 PQISKILVSKMKILV-DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTA 302
P+++K+L + +++V + L+ + ++ +V +++ + + +V+
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76
Query: 303 SLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362
+ + N+ + E I + +L P + + A+ L N+ + A
Sbjct: 77 TAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 422
V AG L K++A L K L +A G ++A+G + +
Sbjct: 136 VRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190
Query: 423 LMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVI 481
+ + + ++ + ++ G + L + P + ++N W +
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL--VQNCLWTL 248
Query: 482 VNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMK 539
NL D + LL L L+ D +V LS + N +K++V ++
Sbjct: 249 RNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305
Query: 540 VCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDE---QTQVILNCDALSHFPALLTHPK 596
+ + + ++ E + L LL P
Sbjct: 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365
Query: 597 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNV 656
+A L A A + + G +P+++ L + +
Sbjct: 366 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425
Query: 657 LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716
++M ++ + + + + + LF QL++ Q+ AA
Sbjct: 426 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF-----VQLLY--SPIENIQRVAA 478
Query: 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETL 776
+ L + +++ + EG P +LL ++ V + M +
Sbjct: 479 GVLCEL--AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ----- 531
Query: 777 ANMIEECGGLDKIEMLQNHENVEIYKLAYDII----ERYFSEVEDEDNLGPQVTDGGFEL 832
++ ++ L E + + A + + +D GG+
Sbjct: 532 --DYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQ 589
Query: 833 DQNPSIPNEG 842
D P
Sbjct: 590 DALGMDPMME 599
Score = 165 bits (420), Expect = 4e-43
Identities = 64/413 (15%), Positives = 117/413 (28%), Gaps = 55/413 (13%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V R E L K+LS + A++ +G + L L L
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHL-TDPSQRLVQNCL 245
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
W L N++ T++ G + ++LL S NV A L N+ + + + V
Sbjct: 246 WTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 302
Query: 171 NMGVVPPLLSFIKPDIPISFLR-NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+G + L+ + + + +L + L L +++
Sbjct: 303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK--- 359
Query: 230 TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289
+ L+ L + + G +P L+
Sbjct: 360 -------------------LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 400
Query: 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFL 349
LL Q + + + I+ E
Sbjct: 401 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV---------------------EGCTGA 439
Query: 350 SNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE 409
+I A + + +P + L N+Q AA L +A +
Sbjct: 440 LHILARDVHNRIVIRGLNTIPLFV-QLLYSPI----ENIQRVAAGVLCELAQ-DKEAAEA 493
Query: 410 VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 462
+ A GA LL S + V A L + D PQ +++ + L
Sbjct: 494 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF 546
Score = 79.6 bits (196), Expect = 2e-15
Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 6/153 (3%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +D + + VE R E+ + L N +
Sbjct: 400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVR--MEEIVEGCTGALHILARDVHN--RIVIRG 455
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+P+ V+ L S N+Q AA L +A + + A GA LL S +
Sbjct: 456 LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG 513
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
V A L + D PQ +++ + L
Sbjct: 514 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF 546
Score = 56.9 bits (137), Expect = 2e-08
Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 6/122 (4%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V+ +Q +A +L + EA+ G L E L S + AA
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELAQDKEA--AEAIEAEGATAPLTELL-HSRNEGVATYAA 519
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
L ++ + Q+ +V L L + E A L P
Sbjct: 520 AVLFRMSED---KPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDD 576
Query: 171 NM 172
Sbjct: 577 PS 578
Score = 30.3 bits (68), Expect = 3.0
Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 734 LVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDK-IEML 792
+ IP LL+ +D V+ ++ + K ++ ++ + + +
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA----IMRSPQMVSAIVRTM 65
Query: 793 QNHENVEIYKLA 804
QN +VE +
Sbjct: 66 QNTNDVETARCT 77
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 258 bits (660), Expect = 1e-74
Identities = 101/820 (12%), Positives = 231/820 (28%), Gaps = 138/820 (16%)
Query: 30 ADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI 89
+ ++DD++ + ++ ++ + Q A + + G+
Sbjct: 49 KGNPEDDDVDNQVLYEWEQGFNQSFNQEQVAD--IDGQYAMTRAQRVRAAMFPETLDEGM 106
Query: 90 LPVLVECLERSDRPNLQF--EAAWALTNIASG-TSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+ + + N+Q E + L + + Q +A A+P +LL
Sbjct: 107 QIPSTQ-FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQV 165
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
V +A + + + + +V ++ ++ + R + + NL +++
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225
Query: 207 PPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264
I + +PAL ++ SV L +
Sbjct: 226 GL---LAIFKSGGIPALVNMLGSPVDSV-------------------------LFHAITT 257
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
L L V +G + ++ LL+ VK + + + G E +IL
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 317
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
++ + + + + + A+++AG + + +L
Sbjct: 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP----- 372
Query: 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444
L W L N++ T++ G + ++LL S NV A L N+ +
Sbjct: 373 SQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429
Query: 445 GPQLRDYVINMGVVPPLLSFIKPDIP-ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPA 503
+ + V +G + L+ + + +L + L
Sbjct: 430 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489
Query: 504 LNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHS 563
L +++ L P I K + L+
Sbjct: 490 LPVVVKL----------LHPPSHWPLI--------KATVGLIRNLALC------------ 519
Query: 564 IYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 623
+ A+ LL + + + +++ +++
Sbjct: 520 ---------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570
Query: 624 AGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLR 683
A + L + I N+ +
Sbjct: 571 ACT--GALHIL---ARDIHNR-------------------------------------IV 588
Query: 684 VAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPF 743
+ LF QL++ Q+ AA + L + +++ + EG P
Sbjct: 589 IRGLNTIPLFV-----QLLY--SPIENIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPL 639
Query: 744 CDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKL 803
+LL ++ V + M + + ++ E L + E + +E ++
Sbjct: 640 TELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV-ELTSSLFRTEPMTWNETGDLGLD 698
Query: 804 AYDIIERYFSEVEDEDNLGPQVTDGGFELDQNPSIPNEGF 843
E +D GG+ D P
Sbjct: 699 IGAQGEPLG--YRQDDPSYRSFHSGGYGQDAMGMDPMMEH 736
Score = 78.9 bits (194), Expect = 3e-15
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 6/154 (3%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +D + + VE R E+ + L N +
Sbjct: 536 VQLLVRAHQDTQRRTSMGGTQQQFVEGVR--MEEIVEACTGALHILARDIHN--RIVIRG 591
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+P+ V+ L S N+Q AA L +A + + A GA LL S +
Sbjct: 592 LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG 649
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
V A L + D PQ +++ + L
Sbjct: 650 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 223 bits (570), Expect = 3e-67
Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 7/244 (2%)
Query: 245 PQISKILVSK-MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
PQ+++ L S M+ + S + GN+QIQ VID+G +P+L+ LLS ++ +
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
L A+ NI +G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAV
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 423
IDAG LP ++ L + EA WAL+NIASG + Q Q V+ AGA+P ++LL
Sbjct: 135 IDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 424 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483
SP+ + ++A+WAL NI G + + V G + L + +
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEK 248
Query: 484 LCRN 487
L +
Sbjct: 249 LQSH 252
Score = 214 bits (548), Expect = 4e-64
Identities = 78/262 (29%), Positives = 126/262 (48%), Gaps = 28/262 (10%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
+ D+ + QL A + ++LS D N I+A+I +G LP LV+ L + + EA
Sbjct: 18 TQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQILQEAL 75
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 171 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 230
+ G +P L+ + L+ W + N+ + LPAL L+ +
Sbjct: 136 DAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 194
Query: 231 SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290
+IL + +WALS + GGN+Q Q V ++G + L
Sbjct: 195 -------------------------QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 229
Query: 291 LLSHKEVKVQTASLRAVGNIVT 312
L SH+ K+Q + A+ + +
Sbjct: 230 LQSHENEKIQKEAQEALEKLQS 251
Score = 184 bits (468), Expect = 6e-53
Identities = 81/276 (29%), Positives = 126/276 (45%), Gaps = 31/276 (11%)
Query: 81 IEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 140
H LP + + L SD Q A + I S + Q Q V+ AGA+P ++LL
Sbjct: 5 HHHHHHGSELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 200
SP+ + ++A+WAL NI G + VI+ G +P L+ + L+ W + N
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSN 122
Query: 201 LCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKIL 258
+ + +I+ LPAL L+ + + L
Sbjct: 123 IA--SGGNEQIQAVIDAGALPALVQLLSSPNEQI-------------------------L 155
Query: 259 VDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318
+ +WALS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI +G +EQ
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215
Query: 319 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
Q + AL L +H EKI KEA L + +
Sbjct: 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 179 bits (456), Expect = 2e-51
Identities = 73/294 (24%), Positives = 112/294 (38%), Gaps = 48/294 (16%)
Query: 319 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378
+ L L + A S I + Q+QAVIDAG LP ++ L
Sbjct: 6 HHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS 65
Query: 379 VGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438
+ EA WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL
Sbjct: 66 P-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 439 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 498
NI G + VI+ G +P L+ + L+ W + N+ +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDA 179
Query: 499 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558
LPAL L+ + + ++ L ++
Sbjct: 180 GALPALVQLLSSPNEQI----------------------LQEALWALSNIAS-------- 209
Query: 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
G +EQ Q + AL L +H EKI KEA L + +
Sbjct: 210 ------------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 140 bits (354), Expect = 1e-37
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 33/243 (13%)
Query: 571 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630
+EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG LP +
Sbjct: 42 DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101
Query: 631 IANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGF 690
+ L + +L + L N+ +S V G
Sbjct: 102 VQLLSSPN---------------EQILQEALWALSNI------ASGGNEQIQAVIDAGAL 140
Query: 691 TLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK 750
+ Q +EA WA+SN+ SG +Q+ ++ G +P LLS
Sbjct: 141 PAL-------VQLLSSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSP 192
Query: 751 DAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIER 810
+ Q++Q L ++N+ + Q ++E G L+K+E LQ+HEN +I K A + +E+
Sbjct: 193 NEQILQEALWALSNIASGGNEQ----KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248
Query: 811 YFS 813
S
Sbjct: 249 LQS 251
Score = 122 bits (309), Expect = 2e-31
Identities = 70/295 (23%), Positives = 115/295 (38%), Gaps = 59/295 (20%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
+ LP++ L Q A + I S + Q Q V+ AGA+
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSD-----DMQEQLSATRKFSQILSDGNEQIQAVIDAGAL 56
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 476
P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+ + L+
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQE 115
Query: 477 VTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 534
W + N+ + +I+ LPAL L+ + +
Sbjct: 116 ALWALSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQI------------------- 154
Query: 535 VSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH 594
+ L ++ G +EQ Q +++ AL LL+
Sbjct: 155 --LQEALWA-LSNIAS--------------------GGNEQIQAVIDAGALPALVQLLSS 191
Query: 595 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKIL 642
P E+I +EA+W LSNI +G Q QAV +AG L K+ +QK + + L
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 53.1 bits (128), Expect = 1e-07
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
Q Q A S + S +Q+ ++ G +P LLS + Q++Q L ++N+
Sbjct: 27 QEQLSATRKFSQIL-SDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85
Query: 770 DAQVETLANMIEECGGLDKIEMLQNHENVEIYKLA 804
+ Q++ + + G L + L + N +I + A
Sbjct: 86 NEQIQAVI----DAGALPALVQLLSSPNEQILQEA 116
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 200 bits (510), Expect = 2e-59
Identities = 76/198 (38%), Positives = 113/198 (57%), Gaps = 6/198 (3%)
Query: 245 PQISKILVSK-MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
PQ+ + L S + L + LS + GGN+QIQ VID+G +P+L+ LLS ++ +
Sbjct: 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
L A+ NI +G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAV
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 423
IDAG LP ++ L + EA WAL+NIASG + Q Q V AGA+ +L
Sbjct: 135 IDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 424 MSPHSNVCEQAVWALGNI 441
+ + ++A AL +
Sbjct: 190 SHENEKIQKEAQEALEKL 207
Score = 190 bits (485), Expect = 6e-56
Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 8/212 (3%)
Query: 277 QMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336
+P ++ L+ + + ++LR + I +G +EQ Q +++ AL LL+
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396
P E+I +EA+W LSNI +G Q+QAVIDAG LP ++ L + EA WAL
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWAL 120
Query: 397 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 456
+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + + V G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Query: 457 VVPPLLSFIK-PDIPISFLRNVTWVIVNLCRN 487
+ L + I + + L +
Sbjct: 181 ALEKLEQLQSHENEKI--QKEAQEALEKLQSH 210
Score = 150 bits (380), Expect = 2e-41
Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 31/233 (13%)
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
H LP +V+ L D A L+ IASG + Q Q V+ AGA+P ++LL
Sbjct: 6 HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64
Query: 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
SP+ + ++A+WAL NI G + VI+ G +P L+ + L+ W + N+
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNI 123
Query: 202 CRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
+ +I+ LPAL L+ + +IL
Sbjct: 124 A--SGGNEQIQAVIDAGALPALVQLLSSPNE-------------------------QILQ 156
Query: 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312
+ +WALS + GGN+Q Q V ++G + L L SH+ K+Q + A+ + +
Sbjct: 157 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 131 bits (333), Expect = 3e-35
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 5/183 (2%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V+ + + A++ ++S N I+A+I +G LP LV+ L S + EA
Sbjct: 18 VQQLNSPDQQELQSALRKLS-QIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEAL 75
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 171 NMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+ G +P L+ + P+ I L+ W + N+ + L L L H +
Sbjct: 136 DAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 230 TSV 232
+
Sbjct: 194 EKI 196
Score = 131 bits (333), Expect = 3e-35
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
+P ++ L SP + A+ L I G + VI+ G +P L+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 181 FIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLW 237
+ P+ I L+ W + N+ + + +I+ LPAL L+
Sbjct: 62 LLSSPNEQI--LQEALWALSNIASGGNE--QIQAVIDAGALPALVQLLSS---------- 107
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
+IL + +WALS + GGN+QIQ VID+G +P+L+ LLS
Sbjct: 108 ---------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
++ +L A+ NI +G +EQ Q + AL L +H EKI KEA L + +
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 130 bits (329), Expect = 1e-34
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 35/238 (14%)
Query: 577 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636
+ L L P ++ + A+ LS I +G Q+QAVIDAG LP ++ L
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFT-LFAF 695
+ +IL + L L N+ + Q + V G L
Sbjct: 66 PNEQILQEAL----WALSNIA--------------SGGNEQIQA---VIDAGALPALVQL 104
Query: 696 ISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVI 755
+S Q +EA WA+SN+ SG +Q+ ++ G +P LLS + Q++
Sbjct: 105 LSS--------PNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155
Query: 756 QVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
Q L ++N+ + Q + ++E G L+K+E LQ+HEN +I K A + +E+ S
Sbjct: 156 QEALWALSNIASGGNEQKQ----AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 115 bits (290), Expect = 2e-29
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 52/258 (20%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
+ LP+++ L + L+ A L+ IASG + Q Q V+ AGA+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQS-----ALRKLSQIASGGNEQIQAVIDAGAL 56
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 476
P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+ + L+
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQE 115
Query: 477 VTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 534
W + N+ + +I+ LPAL L+ + +
Sbjct: 116 ALWALSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQI------------------- 154
Query: 535 VSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH 594
++ L ++ G +EQ Q + AL L +H
Sbjct: 155 ---LQEALWALSNIAS--------------------GGNEQKQAVKEAGALEKLEQLQSH 191
Query: 595 PKEKICKEAVWFLSNITA 612
EKI KEA L + +
Sbjct: 192 ENEKIQKEAQEALEKLQS 209
Score = 113 bits (286), Expect = 6e-29
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627
++ G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG L
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 628 PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAAT 687
P ++ L N +L L +S E++ V
Sbjct: 99 PALVQLLS-----------SPNEQILQEALWALSNIASGGNEQIQA----------VIDA 137
Query: 688 GGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLL 747
G QL+ Q +EA WA+SN+ SG +Q + + G + L
Sbjct: 138 GALPALV-----QLLS--SPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQ 189
Query: 748 SCKDAQVIQVVLDGINNM 765
S ++ ++ + + + +
Sbjct: 190 SHENEKIQKEAQEALEKL 207
Score = 91.9 bits (229), Expect = 3e-21
Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 49/244 (20%)
Query: 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 463
+P ++ L SP + A+ L I G + VI+ G +P L+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 464 FIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLW 520
+ P+ I L+ W + N+ + + +I+ LPAL L+ + +
Sbjct: 62 LLSSPNEQI--LQEALWALSNIASGGN--EQIQAVIDAGALPALVQLLSSPNEQI----- 112
Query: 521 LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVIL 580
++ L ++ G +EQ Q ++
Sbjct: 113 -----------------LQEALWALSNIAS--------------------GGNEQIQAVI 135
Query: 581 NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCK 640
+ AL LL+ P E+I +EA+W LSNI +G Q QAV +AG L K+ + K
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195
Query: 641 ILNK 644
I +
Sbjct: 196 IQKE 199
Score = 78.1 bits (193), Expect = 2e-16
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
++S N I+A+I +G LP LV+ L + + EA WAL+NIASG + Q Q V AGA
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGA 181
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNI 158
+ +L + + ++A AL +
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 30.7 bits (70), Expect = 1.4
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 724 ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEEC 783
+ G+ +P L+ D Q +Q L ++ + + Q++ + +
Sbjct: 1 MRGSHHHH---HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVI----DA 53
Query: 784 GGLDK-IEMLQNHENVEI 800
G L +++L N +I
Sbjct: 54 GALPALVQLLS-SPNEQI 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 176 bits (446), Expect = 6e-47
Identities = 73/445 (16%), Positives = 150/445 (33%), Gaps = 41/445 (9%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V + + L S L S K P LP ++ L ++ AA
Sbjct: 11 VPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAML-GFRLDAVKSNAA 69
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLRDYV 169
L ++ +V +P+ + LL P V A AL NI G + +
Sbjct: 70 AYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
N VP L+ ++ + +T + NL + + + L AL +
Sbjct: 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI--VDHALHALTDEVIIPH 187
Query: 230 TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID-SGVVPSL 288
+ E N + +L +T L ++ ++ + + + G+V +L
Sbjct: 188 SG-------WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL 240
Query: 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC----DALSHFPALLTHPKEKICKE 344
I ++ + D ++++ NC LS+ E+ +
Sbjct: 241 IFIV---------------QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404
A +N + + ++ I+ L++ P + +A A+ N+ +G
Sbjct: 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESK----TPAILEASAGAIQNLCAGRW 341
Query: 405 AQTQE----VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 460
+ + A+ LL + H V + A AL N+ D + ++ +I +P
Sbjct: 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD-ARNKE-LIGKHAIPN 399
Query: 461 LLSFIKPDIPISFLRNVTWVIVNLC 485
L+ + S ++++
Sbjct: 400 LVKNLPGGQQNSSWNFSEDTVISIL 424
Score = 125 bits (314), Expect = 4e-30
Identities = 64/478 (13%), Positives = 145/478 (30%), Gaps = 49/478 (10%)
Query: 10 VELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSA 69
+ + R+ P + + ++ ++ + ++ A +
Sbjct: 22 AQHERGSLASLDSLRKGGPPPPNWRQPELPEV---------IAMLGFRLDAVKSNAA-AY 71
Query: 70 RKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ-EVV 128
+ L + + +PVLV L + + A AL NI+ G + +
Sbjct: 72 LQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKIAIK 130
Query: 129 AAGAVPLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-- 185
VP +RLL ++ E L N+ ++ +++ + I P
Sbjct: 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSG 189
Query: 186 --------------IPISFLRNVTWVIVNLCR----NKDPPPSMSTIIELLPAL--NILI 225
S L N + N+ + +++ L + +
Sbjct: 190 WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIG 249
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND-QIQMVIDSGV 284
S + + ++ + + + + ++ T +++ V
Sbjct: 250 QKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEV 309
Query: 285 VPSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQT----QVILNCDALSHFPALLTHPKE 339
V I LL + + AS A+ N+ G + ALS LLT+ E
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHE 369
Query: 340 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL---QKVGRIVLRPNLQFEAAWAL 396
++ K A L N+ A+ + +I +P ++ NL Q+ + +
Sbjct: 370 RVVKAASGALRNLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427
Query: 397 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS--NVCEQAVWALGNIIGDGPQLRDYV 452
+ + +++ + + + S + A L I G +
Sbjct: 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE 485
Score = 75.8 bits (185), Expect = 3e-14
Identities = 44/455 (9%), Positives = 120/455 (26%), Gaps = 46/455 (10%)
Query: 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 426
G +I + P Q E + + +P + +L
Sbjct: 1 GSPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR 60
Query: 427 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486
V A L ++ +++ V + +P L+ + + N+
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK-EVHLGACGALKNISF 119
Query: 487 NKDPPPSMSTI----IELLPALNILIHHHDTSV-----SIYLWLSIIEKNPQISKILVSK 537
+D ++ + L + +L D + LS + I+
Sbjct: 120 GRDQDNKIAIKNCDGVPAL--VRLLRKARDMDLTEVITGTLWNLSSHDSIKME--IVDHA 175
Query: 538 MKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE 597
+ + + + H+ + ++ + N + +
Sbjct: 176 LHALTDEV-IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD 234
Query: 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVL 657
+ ++ + + + V + + L+ S ++ +
Sbjct: 235 GLVDALIFIVQAEIGQKDSDSKLVENC------VCLLRNLSYQVHREIPQAERYQEAAPN 288
Query: 658 LQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717
+ + + + L+ + + +A
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYI----------------SLLKESKTP-AILEASAG 331
Query: 718 AISNLTISGNRDQV---AKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVE 774
AI NL + L QE + DLL+ + +V++ + N+ A
Sbjct: 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNL-----AVDA 386
Query: 775 TLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIE 809
+I + + ++ L + + + D +
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 166 bits (421), Expect = 2e-45
Identities = 54/379 (14%), Positives = 119/379 (31%), Gaps = 49/379 (12%)
Query: 14 KNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLL 73
+ + A + ++ + +D AV KL
Sbjct: 2 GHHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDK-NPMPAPVEHQICPAVCVLMKLS 60
Query: 74 SSDKNPPIEALIHSGILPVLVECLERSDR----------PNLQFEAAWALTNIASGTSAQ 123
+++ A+ G L + E L+ L+ A ALTN+ G A
Sbjct: 61 FDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN 118
Query: 124 TQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSF 181
+ + G + + L S ++ + L N+ + + +G V L+
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178
Query: 182 IKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
S L++V + NL NK ++ + L + L + T+
Sbjct: 179 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VGTLTYRSQTN------ 230
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMVIDSGVVPSLIPLLSH 294
+ I+ L ++ D Q++ ++ + +L+ L
Sbjct: 231 ----------------TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274
Query: 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
+ + + + + N+ + + + + A+S L+ + I + L N+ A
Sbjct: 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334
Query: 355 GNQAQVQA---VIDAGLLP 370
A+ + + LP
Sbjct: 335 NRPAKYKDANIMSPGSSLP 353
Score = 164 bits (416), Expect = 1e-44
Identities = 53/357 (14%), Positives = 115/357 (32%), Gaps = 58/357 (16%)
Query: 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 145
H + + + + A L ++ + + G + LL
Sbjct: 30 HEPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCE 87
Query: 146 -----------NVCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIKPDIPISFLRN 193
+ A AL N+ + + +M G + L++ +K + +
Sbjct: 88 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQV 146
Query: 194 VTWVIVNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 251
+ V+ NL D S T+ E+ + AL
Sbjct: 147 IASVLRNLSWRADVN-SKKTLREVGSVKALMECALE------------------------ 181
Query: 252 VSKMKILVDTVWALSYLT-DGGNDQIQMVIDSGVVPSLIPLLSHKE-------VKVQTAS 303
V K L + AL L+ ++ + G + L+ L+++ ++
Sbjct: 182 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
LR V +++ ++ Q++ + L L I A L N++A N +A+
Sbjct: 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE---VVAAGAVP 417
D G + + + + +A AL N+ + A+ ++ + ++P
Sbjct: 302 WDMGAVSMLKNLIHSK-----HKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
Score = 141 bits (356), Expect = 9e-37
Identities = 59/362 (16%), Positives = 111/362 (30%), Gaps = 56/362 (15%)
Query: 293 SHKEVKVQTASLRAVGNIVTGTD-EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351
H + L + I + + + + P E AV L
Sbjct: 3 HHHHHHM----LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 58
Query: 352 ITAGNQAQVQAVIDAGLLPKIIANLQ------KVGRIVLRPNLQFEAAWALTNIASGTSA 405
++ + + A+ + G L I LQ + L+ A ALTN+ G A
Sbjct: 59 LSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117
Query: 406 QTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLS 463
+ + G + + L S ++ + L N+ + + +G V L+
Sbjct: 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177
Query: 464 FIKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 519
S L++V + NL NK ++ + L + L + T+
Sbjct: 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VGTLTYRSQTN----- 230
Query: 520 WLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVI 579
L+IIE L +S + ++ Q++
Sbjct: 231 TLAIIES--------------GGGILRNVSS-----------------LIATNEDHRQIL 259
Query: 580 LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSC 639
+ L L I A L N++A N +A+ D G + + + +
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319
Query: 640 KI 641
I
Sbjct: 320 MI 321
Score = 116 bits (293), Expect = 2e-28
Identities = 51/372 (13%), Positives = 110/372 (29%), Gaps = 33/372 (8%)
Query: 145 SNVCEQAVW-ALGNIIGDGPQLRDYVI-NMGVVPPLLSFIK-PDIPISFLRNVTWVIVNL 201
+ + L I ++ + + + + P + V++ L
Sbjct: 2 GHHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQ--ICPAVCVLMKL 59
Query: 202 CRNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
+++ + EL L A+ L+ + +
Sbjct: 60 SFDEEHRH---AMNELGGLQAIAELLQVDCEMYG--------------LTNDHYSITLRR 102
Query: 260 DTVWALSYLTDGGNDQIQMVI-DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318
AL+ LT G + G + +L+ L + +Q + N+ D +
Sbjct: 103 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162
Query: 319 QV-ILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQA-QVQAVIDAGLLPKIIAN 375
+ + ++ KE K + L N++A + G L ++
Sbjct: 163 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222
Query: 376 LQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 432
L + + L N++S Q + + L+ L S +
Sbjct: 223 LTYRSQTNTLA-IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281
Query: 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 492
A L N+ P+ ++ + +MG V L + I + NL N+
Sbjct: 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAALRNLMANRPAKY 340
Query: 493 SMSTIIELLPAL 504
+ I+ +L
Sbjct: 341 KDANIMSPGSSL 352
Score = 94.1 bits (234), Expect = 8e-21
Identities = 51/398 (12%), Positives = 108/398 (27%), Gaps = 82/398 (20%)
Query: 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 463
+ + + + +P + AV L + D + R + +G + +
Sbjct: 22 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80
Query: 464 FIKPDIP----------ISFLRNVTWVIVNLCRNKDPPPSMSTIIEL---LPALNILIHH 510
++ D I+ R + NL + +T+ + + AL +
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--NKATLCSMKGCMRALVAQLKS 138
Query: 511 HDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
+ + L LS + + +K
Sbjct: 139 ESEDLQQV----------------------IASVLRNLSWRADV-NSKKT---------- 165
Query: 571 GTDEQTQVILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQA-QVQAVIDAGLLP 628
+ ++ KE K + L N++A + G L
Sbjct: 166 --------LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 217
Query: 629 KIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688
++ L RS +++ +L NV S+ N + R I +
Sbjct: 218 FLVGTLTYRSQTNTLAIIESGGGILRNV---SSLIATNEDHRQI-----------LRENN 263
Query: 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLS 748
L + Q + A + NL+ + N L G + +L+
Sbjct: 264 C--LQTLL---QHLK--SHSLTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLIH 315
Query: 749 CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGL 786
K + + N++ AN++ L
Sbjct: 316 SKHKMIAMGSAAALRNLMA-NRPAKYKDANIMSPGSSL 352
Score = 52.2 bits (125), Expect = 4e-07
Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 42/243 (17%)
Query: 571 GTDEQTQVILNCDALSHFPALL-----------THPKEKICKEAVWFLSNITAGNQAQVQ 619
+E + L LL H + + A L+N+T G+ A
Sbjct: 61 FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120
Query: 620 AVI-DAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQK 678
+ G + ++A L+ S + VL N+ + +V +
Sbjct: 121 TLCSMKGCMRALVAQLKSESEDLQQVIA----SVLRNL-----SWRADVNSKKT------ 165
Query: 679 TSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEG 738
+ G + + T K A+ NL+ ++ +G
Sbjct: 166 -----LREVGS------VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 214
Query: 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLK---MADAQVETLANMIEECGGLDK-IEMLQN 794
+ L+ + +++ +L+ A E ++ E L ++ L++
Sbjct: 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274
Query: 795 HEN 797
H
Sbjct: 275 HSL 277
Score = 49.1 bits (117), Expect = 4e-06
Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 35/236 (14%)
Query: 575 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI-DAGLLPKIIAN 633
+ + + A L E + + L N++ + + + G + ++
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178
Query: 634 LQKRSCKILNKYLDNNNMVLHNV---LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGF 690
+ L +V L +S + + A G
Sbjct: 179 ALEVK----------KESTLKSVLSALWNLSAHCTENKADI------------CAVDGAL 216
Query: 691 TLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT--ISGNRDQVAKLVQEGVIPPFCDLLS 748
AF+ + + N++ I+ N D L + + L
Sbjct: 217 ---AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 749 CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLA 804
++ + N+ A+ + + G + ++ L + ++ I +
Sbjct: 274 SHSLTIVSNACGTLWNLS----ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 325
Score = 43.3 bits (102), Expect = 2e-04
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 712 QKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA 771
++ A A++NLT ++ +G + L + + QV+ + N+ AD
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 160
Query: 772 QVETLANMIEECGGLDK-IEMLQNHENVEIYKLA 804
+ + E G + +E + K
Sbjct: 161 NSK---KTLREVGSVKALMECALEVKKESTLKSV 191
Score = 41.4 bits (97), Expect = 8e-04
Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 17/120 (14%)
Query: 712 QKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA 771
A + L S + + + + G + +LL + + A
Sbjct: 49 ICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYA-- 104
Query: 772 QVETLANM-----------IEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDN 820
L N+ G + + E+ ++ ++ ++ R S D ++
Sbjct: 105 -GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL-RNLSWRADVNS 162
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 165 bits (417), Expect = 4e-44
Identities = 62/418 (14%), Positives = 126/418 (30%), Gaps = 34/418 (8%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+P V+ L S Q A+ + + + Q+V G + + LL SP+ NV +
Sbjct: 4 IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
A AL N++ + + +S ++ + +T ++ NL +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
+ AL +L + + S V ++ + L L+
Sbjct: 123 ELIA-----DALPVLAD------RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS 171
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329
+ M SG++ SL+ + + + + + ++
Sbjct: 172 SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231
Query: 330 FPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNL 388
+ + + + N + + PK L I NL
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291
Query: 389 ---------QFEAAWALTNIASG-----TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 434
A AL N+ + + + +P RLL S +S+V
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351
Query: 435 VWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF-----LRNVTWVIVNLCRN 487
L N+ P L + N P + + + L + + + NL +
Sbjct: 352 ASLLSNMSRH-PLLHRVMGNQV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS 407
Score = 104 bits (261), Expect = 6e-24
Identities = 60/420 (14%), Positives = 124/420 (29%), Gaps = 51/420 (12%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V+ R N +Q A A + L + V L R+ +Q +
Sbjct: 50 VDLLRSPNQNVQQAAA-GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT 108
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN----------------VCEQAVWA 154
L N++S + +E + A A+P+ ++ P S V A
Sbjct: 109 GLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC 166
Query: 155 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF-----LRNVTWVIVNLCRNKDPPP 209
L N+ + G++ L+++++ + S + N V+ NL D
Sbjct: 167 LRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA-- 224
Query: 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
+ T L + +S + S N L
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLP---------------EE 269
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSH------KEVKVQTASLRAVGNIVTGTDEQTQVILN 323
+ + S + + + L+ E + + + L
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329
Query: 324 CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL-QKVGRI 382
L LL + + LSN++ + V+ + P++ L G
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNT 387
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS-NVCEQAVWALGNI 441
++ A + + N+ + ++ ++ + + L S S E A L ++
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
Score = 98.7 bits (245), Expect = 7e-22
Identities = 55/414 (13%), Positives = 120/414 (28%), Gaps = 47/414 (11%)
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321
+ + + Q V G + L+ LL VQ A+ A+ N+V +
Sbjct: 23 AYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82
Query: 322 LNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL---- 376
+ + +LL +I K+ L N+++ ++ ++ + A LP + +
Sbjct: 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIADALPVLADRVIIPF 140
Query: 377 -------QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
+ R V+ P + F A L N++S + + +G + L +
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDS-LMAYVQNCVA 199
Query: 430 VCEQAVWALGNIIGDGPQLRDYV-INMGVVPPLLSFIKPDIPI--------------SFL 474
++ N + L + + L + +
Sbjct: 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMN 259
Query: 475 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV-----SIYLWLSIIEKNP- 528
N + N + + LN++ + L+ +
Sbjct: 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319
Query: 529 -QISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSH 587
+S+++ K K + L + + M ++
Sbjct: 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS----RHPLLHRVMGNQVFPE 375
Query: 588 FPALL------THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635
LL T E I A + + N+ A + + +L II +
Sbjct: 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
Score = 98.4 bits (244), Expect = 1e-21
Identities = 62/498 (12%), Positives = 140/498 (28%), Gaps = 90/498 (18%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344
+P + LS ++ K Q + + + Q + + LL P + + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404
A L N+ + + + ++ L++ G +Q + L N++S
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN----AEIQKQLTGLLWNLSST-- 117
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSN----------------VCEQAVWALGNIIGDGPQL 448
+ +E + A A+P+ ++ P S V A L N+
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177
Query: 449 RDYVINMGVVPPLLSFIKPDIPISF-----LRNVTWVIVNLCRNKDPPPSMSTIIELLPA 503
+ G++ L+++++ + S + N V+ NL D E+
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD--------AEVPTR 229
Query: 504 LNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHS 563
L ++ +N K S +
Sbjct: 230 YRQLEYNA--------------RNAYTEKSSTGCFSNKS------------DKMMNNNYD 263
Query: 564 IYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV-WFLSNITAGNQAQVQAVI 622
+ + + + + DA+ + L+ K+ EA L N+TA +
Sbjct: 264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323
Query: 623 DAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNV----LLQMSVFLQNVEERMIYSSFQK 678
L +++ + + L + N + L MS
Sbjct: 324 QLIGL-------KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV--------- 367
Query: 679 TSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEG 738
+ + ++ + A + + NL S +
Sbjct: 368 -----MGNQVFPEVTRLLTSHTGNTSNSED--ILSSACYTVRNLMAS-QPQLAKQYFSSS 419
Query: 739 VIPPFCDLLSCKDAQVIQ 756
++ +L +
Sbjct: 420 MLNNIINLCRSSASPKAA 437
Score = 96.1 bits (238), Expect = 5e-21
Identities = 57/396 (14%), Positives = 113/396 (28%), Gaps = 40/396 (10%)
Query: 29 LADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN---------P 79
L + + +E Q + V R N E+Q L S+D+ P
Sbjct: 71 LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALP 130
Query: 80 PIEALI---HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136
+ + SG P + F A L N++S + + +G +
Sbjct: 131 VLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDS- 189
Query: 137 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
L + ++ N + L + VP ++ + ++ +
Sbjct: 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD--AEVPTRYRQLEYNARNAYTEKSST 247
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 256
+ +K + + S +I +L+++ K+ K
Sbjct: 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--------KKDA 299
Query: 257 ILVDTVWALSYLTDGGND-----QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311
L AL LT + + +P + LL V + + N+
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359
Query: 312 TGTDEQTQVILNCDALSHFPALL------THPKEKICKEAVWFLSNITAGNQAQVQAVID 365
++ LL T E I A + + N+ A +
Sbjct: 360 --RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417
Query: 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401
+ +L II + P A L+++ S
Sbjct: 418 SSMLNNIINLCRSSA----SPKAAEAARLLLSDMWS 449
Score = 70.2 bits (171), Expect = 1e-12
Identities = 48/422 (11%), Positives = 126/422 (29%), Gaps = 84/422 (19%)
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
+P ++ L S + + + + V +G + L+ ++ + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ-NVQQ 62
Query: 476 NVTWVIVNLC----RNKDPPPSMSTIIELLPALNILIHHHDTSV-----SIYLWLSIIEK 526
+ NL NK + I E + L + + + LS ++
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR---RTGNAEIQKQLTGLLWNLSSTDE 119
Query: 527 NPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALS 586
+ ++ + V + + + + +
Sbjct: 120 LKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVD--------------------- 156
Query: 587 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ--KRSCKILNK 644
++ A L N+++ + + +GL+ ++A +Q + + +K
Sbjct: 157 ----------PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206
Query: 645 YLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFF 704
++N VLHN+ ++ + ++ Y++ + ++
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266
Query: 705 P--------------------------QGEFQTQKEAA-WAISNLTISGNR----DQVAK 733
P + + EA A+ NLT S
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326
Query: 734 LVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQ 793
++E +P LL ++ V++ ++NM ++ L ++ + +L
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNM-----SRHPLLHRVMGNQVFPEVTRLLT 381
Query: 794 NH 795
+H
Sbjct: 382 SH 383
Score = 41.0 bits (95), Expect = 0.001
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 707 GEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNML 766
+ + Q A+ I + + ++ Q G I DLL + V Q + N++
Sbjct: 14 QDEKYQAIGAYYIQHTC-FQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72
Query: 767 KMADAQVETLANMIEECGGLDK-IEMLQNHENVEIYKLAYDII 808
+ G+ + + +L+ N EI K ++
Sbjct: 73 FRSTTNKLETR----RQNGIREAVSLLRRTGNAEIQKQLTGLL 111
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 160 bits (406), Expect = 1e-42
Identities = 57/379 (15%), Positives = 118/379 (31%), Gaps = 58/379 (15%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPEL 61
R RR + L + R + + D M
Sbjct: 118 RGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM-------------PAPVEHQ 164
Query: 62 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER----------SDRPNLQFEAAW 111
AV KL +++ A+ G L + E L+ L+ A
Sbjct: 165 ICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222
Query: 112 ALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYV 169
ALTN+ G A + + G + + L S ++ + L N+ + +
Sbjct: 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 282
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALNILI 225
+G V L+ S L++V + NL NK ++ + L + L
Sbjct: 283 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VGTLT 340
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMVIDS 282
+ T+ + I+ L ++ D Q++ ++
Sbjct: 341 YRSQTN----------------------TLAIIESGGGILRNVSSLIATNEDHRQILREN 378
Query: 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKIC 342
+ +L+ L + + + + + N+ + + + + A+S L+ + I
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438
Query: 343 KEAVWFLSNITAGNQAQVQ 361
+ L N+ A A+ +
Sbjct: 439 MGSAAALRNLMANRPAKYK 457
Score = 150 bits (380), Expect = 4e-39
Identities = 67/438 (15%), Positives = 139/438 (31%), Gaps = 88/438 (20%)
Query: 67 QSARKLLSSDKNPPI-EALIHSGILPVLVECLERSDR-----------PNLQFEAAWALT 114
+R LL+ + ++ SG LP+L++ L +D+ + A+ AL
Sbjct: 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107
Query: 115 NIASGTSAQTQEVVAAGAVPL------------------------FLRLLMSPHSNVCEQ 150
NI + + L + +P +
Sbjct: 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICP 167
Query: 151 AVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFL----------RNVTWVIVN 200
AV L + D + R + +G + + ++ D + L R + N
Sbjct: 168 AVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226
Query: 201 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVS-KMKILV 259
L + +T+ + + L+ L S +
Sbjct: 227 LTFGDVA--NKATLCSMKGCMRALVA-----------------------QLKSESEDLQQ 261
Query: 260 DTVWALSYLTDGGNDQIQMVI-DSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDE- 316
L L+ + + + + G V +L+ K+ + L A+ N+ E
Sbjct: 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321
Query: 317 QTQVILNCDALSHFPALLTHP----KEKICKEAVWFLSNIT---AGNQAQVQAVIDAGLL 369
+ + AL+ LT+ I + L N++ A N+ Q + + L
Sbjct: 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 381
Query: 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
++ +L+ + A L N+++ + + GAV + L+ S H
Sbjct: 382 QTLLQHLKSH-----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 436
Query: 430 VCEQAVWALGNIIGDGPQ 447
+ + AL N++ + P
Sbjct: 437 IAMGSAAALRNLMANRPA 454
Score = 146 bits (370), Expect = 9e-38
Identities = 53/403 (13%), Positives = 123/403 (30%), Gaps = 51/403 (12%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +S + A L ++ ++ + ++ + + H
Sbjct: 87 VLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS- 145
+ + + + A L ++ + + G + LL
Sbjct: 147 EPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEM 204
Query: 146 ----------NVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194
+ A AL N+ GD G + L++ +K + + +
Sbjct: 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 263
Query: 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254
V+ NL D + + + ++ L+ K
Sbjct: 264 ASVLRNLSWRADV--NSKKTLREVGSVKALMECALEV---------------------KK 300
Query: 255 MKILVDTVWALSYLTDGGND-QIQMVIDSGVVPSLIPLLSHKE-------VKVQTASLRA 306
L + AL L+ + + + G + L+ L+++ ++ LR
Sbjct: 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
Query: 307 VGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366
V +++ ++ Q++ + L L I A L N++A N +A+ D
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420
Query: 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE 409
G + + + + +A AL N+ + A+ ++
Sbjct: 421 GAVSMLKNLIHSK-----HKMIAMGSAAALRNLMANRPAKYKD 458
Score = 133 bits (337), Expect = 2e-33
Identities = 74/493 (15%), Positives = 147/493 (29%), Gaps = 91/493 (18%)
Query: 160 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL-- 217
+ +V LLS + +++ ++ + ++D S ++ +
Sbjct: 19 SHMRLTSHLGTKVEMVYSLLSMLGTHDK----DDMSRTLLAMSSSQD---SCISMRQSGC 71
Query: 218 LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ 277
LP L L+H +D + ++ AL + D +
Sbjct: 72 LPLLIQLLHGNDKDSVLLGNSRGSKE-------------ARARASAALHNIIHSQPDDKR 118
Query: 278 MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP 337
+ V+ L +RA + + + P
Sbjct: 119 GRREIRVLHLL-------------EQIRAYCETC-----WEWQEAHEPGMDQDKNPMPAP 160
Query: 338 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR------PNLQFE 391
E AV L + + ++ A+ + G L I LQ + L+
Sbjct: 161 VEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY 219
Query: 392 AAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLR 449
A ALTN+ G A + + G + + L S ++ + L N+ +
Sbjct: 220 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSK 279
Query: 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALN 505
+ +G V L+ S L++V + NL NK ++ + L +
Sbjct: 280 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VG 337
Query: 506 ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIY 565
L + T+ L+IIE L +S
Sbjct: 338 TLTYRSQTN-----TLAIIES--------------GGGILRNVSS--------------- 363
Query: 566 MCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG 625
+ ++ Q++ + L L I A L N++A N +A+ D G
Sbjct: 364 --LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421
Query: 626 LLPKIIANLQKRS 638
+ + + +
Sbjct: 422 AVSMLKNLIHSKH 434
Score = 92.7 bits (230), Expect = 6e-20
Identities = 58/410 (14%), Positives = 112/410 (27%), Gaps = 98/410 (23%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL---------- 334
V + LLS + R + + + + + + L LL
Sbjct: 31 VEMVYSLLSMLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLL 89
Query: 335 --THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP---KIIANLQKVGRIVLR---- 385
+ ++ A L NI + + +L +I A +
Sbjct: 90 GNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149
Query: 386 ------------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS----- 428
+ A L ++ + + G + LL
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLT 208
Query: 429 ------NVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 481
+ A AL N+ GD G + L++ +K + + + V+
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVL 267
Query: 482 VNLCRNKDPPPSMSTIIEL--LPAL-NILIHHHDTSVSIYLWLSIIEKNPQISKILVSKM 538
NL D S T+ E+ + AL + S +
Sbjct: 268 RNLSWRADVN-SKKTLREVGSVKALMECALEVKKEST----------------------L 304
Query: 539 KVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP--- 595
K L+ LS + T+ + + AL+ LT+
Sbjct: 305 KSVLSALWNLSAHC-------------------TENKADICAVDGALAFLVGTLTYRSQT 345
Query: 596 -KEKICKEAVWFLSNIT---AGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641
I + L N++ A N+ Q + + L ++ +L+ S I
Sbjct: 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395
Score = 66.1 bits (161), Expect = 2e-11
Identities = 49/467 (10%), Positives = 120/467 (25%), Gaps = 110/467 (23%)
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN------------V 430
+L + + + + L + S + + +G +PL ++LL +
Sbjct: 40 MLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98
Query: 431 CEQAVWALGNIIGDGP-----------------------QLRDYVINMGVVPPLLSFIKP 467
+A AL NII P ++ P
Sbjct: 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMP 158
Query: 468 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIE 525
+ V++ L +++ + EL L A+ L+ L+
Sbjct: 159 APVEHQICPAVCVLMKLSFDEE---HRHAMNELGGLQAIAELLQVDCEMYG----LTNDH 211
Query: 526 KNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDAL 585
+ + + L L+ + + +
Sbjct: 212 YSITLRRY-------AGMALTNLTFGD-------------------VANKATLCSMKGCM 245
Query: 586 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI-DAGLLPKIIANLQKRSCKILNK 644
A L E + + L N++ + + + G + ++ +
Sbjct: 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-------- 297
Query: 645 YLDNNNMVLHNV---LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQL 701
L +V L +S + + A G
Sbjct: 298 --VKKESTLKSVLSALWNLSAHCTENKADI------------CAVDGALAFLV-----GT 338
Query: 702 MFFPQGEFQT--QKEAAWAISNLT--ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQV 757
+ + + + N++ I+ N D L + + L ++
Sbjct: 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398
Query: 758 VLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLA 804
+ N+ A+ + + G + ++ L + ++ I +
Sbjct: 399 ACGTLWNLS----ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 441
Score = 46.9 bits (111), Expect = 2e-05
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 25 RNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEAL 84
RNV +T+ED + + + N +++ + + + A + L + + EAL
Sbjct: 359 RNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEAL 417
Query: 85 IHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126
G + +L + S + +A AL N+ + A+ ++
Sbjct: 418 WDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPAKYKD 458
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 155 bits (391), Expect = 5e-39
Identities = 70/580 (12%), Positives = 165/580 (28%), Gaps = 46/580 (7%)
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+A ++ + +A I + + L D + A+T + +
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPD-MESKVRVTVAITALLN 276
Query: 119 GTSAQTQEVVAA-GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
G +VVA G + + L + + A L + + G V
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK-AKALCEQG-VDI 334
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
L + L ++ +
Sbjct: 335 LKRLYHSKND-GIRVRALVGLCKLGSYGGQDAAIRPFGDGAA------------------ 375
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
L + E + I L+YLT + +++ D + +L+ L
Sbjct: 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
+ N+ ++Q L L K+ I +E +
Sbjct: 436 SCLYGVVTTFVNLCNAYEKQEM-------LPEMIELAKFAKQHIPEEHEL---DDVDFIN 485
Query: 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 417
++ + + G+ + A + N Q A L + + +VV G V
Sbjct: 486 KRITVLANEGITTALCALAK-----TESHNSQELIARVLNAVCGLKELR-GKVVQEGGVK 539
Query: 418 LFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLR-DYVINMGVVPPLLSFIKPDIPISFLR 475
LR+ + A AL I I P++ ++ V+ PLL+ ++ D
Sbjct: 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISK 532
+ NL + + + + + + + +++ I
Sbjct: 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+ +V ++L L + + ++ + S +++ L L+
Sbjct: 660 FEGNNDRV--KFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 632
+P + + + N+ + + + + ++ +
Sbjct: 718 ANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSG 757
Score = 149 bits (378), Expect = 2e-37
Identities = 58/441 (13%), Positives = 124/441 (28%), Gaps = 69/441 (15%)
Query: 35 EDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLV 94
+ K+A+ L+ + +++ A L+ D + + + L+
Sbjct: 372 DGAALKLAEACRRFLIKPG---KDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALM 427
Query: 95 ECLERSDRPNLQFEAAWALTNIASGTSAQTQE---------------------------- 126
+ R + + N+ + Q
Sbjct: 428 DLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486
Query: 127 ----VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 182
+ G L + N E L + G +LR V+ G V LL
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMA 545
Query: 183 KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI--IELLPALNILIHHHDTSVSIYLWLSI 240
R+ T + + +P S S ++++ L L+ T++ +
Sbjct: 546 LEGTEKG-KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF----- 599
Query: 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQ 300
+++ AL+ L Q +I V + L + +
Sbjct: 600 -------------------ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640
Query: 301 TASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360
A+ + + N+V D N D + L E+ L+ IT+ +
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700
Query: 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 420
+ ++ I+ L P +Q + N+ + +++ + L
Sbjct: 701 EKILAIASWLDILHTLIANP----SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLS 756
Query: 421 RLLMSPHSNVCEQAVWALGNI 441
L P + A +
Sbjct: 757 GLGQLPDDTRAKAREVATQCL 777
Score = 149 bits (376), Expect = 3e-37
Identities = 68/485 (14%), Positives = 148/485 (30%), Gaps = 28/485 (5%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+++ A D+ Q + L+++ + + +L L S ++
Sbjct: 294 MILAMATTDDELQQR---VACECLIAASSKKDKAKALCEQGVDILKR-LYHSKNDGIRVR 349
Query: 109 AAWALTNIASGTSAQTQEVVAAGA-----VPLFLRLLMSPHSN--VCEQAVWALGNIIGD 161
A L + S R L+ P + + A L + D
Sbjct: 350 ALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD 409
Query: 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPAL 221
+ + + L+ + S L V VNLC + + +IEL
Sbjct: 410 AECKEKLIEDKASIHALMDLARGGNQ-SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFA 468
Query: 222 NILI---HHHDTSVSIYLWLSIIEKN---PQISKILVSK-MKILVDTVWALSYLTDGGND 274
I H D I ++++ + + ++ L+ + G +
Sbjct: 469 KQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKE 527
Query: 275 QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQV--ILNCDALSHFPA 332
V+ G V +L+ + K + + +A+ I + + + D +
Sbjct: 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN 587
Query: 333 LLTHPKEKICK-EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFE 391
LL + E++ L+N+ + N++ Q +I + KI L + L
Sbjct: 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-----HLYLTRA 642
Query: 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451
AA L N+ V L AL I + +
Sbjct: 643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEK 702
Query: 452 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511
++ + +L + + + +I+N+ + +++ L+ L
Sbjct: 703 ILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762
Query: 512 DTSVS 516
D + +
Sbjct: 763 DDTRA 767
Score = 133 bits (336), Expect = 2e-32
Identities = 99/786 (12%), Positives = 233/786 (29%), Gaps = 73/786 (9%)
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
E L + + + ++ + + + +T+ V+ VP F+R+L
Sbjct: 43 ELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLD 102
Query: 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
H N A + L I+ L++ + + +T ++ ++
Sbjct: 103 QKHENCVSTAQFCLQTILNALSGLKNKPDSKPD-----KELCTRNNREIDTLLTCLVYSI 157
Query: 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV--------- 252
+ +IEL+ +H+ ++ ++E + ++L
Sbjct: 158 TDRTISGAARDGVIELITRN---VHYT----ALEWAERLVEIRG-LCRLLDVCSELEDYK 209
Query: 253 --SKMKILVDTVWALSYLT-----DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLR 305
S M I + S + D+ + + + L +++ +
Sbjct: 210 YESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTV 269
Query: 306 AVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365
A+ ++ G + ++ + + + +++ + + + + +A+ +
Sbjct: 270 AITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCE 329
Query: 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGA-----VPLFL 420
G+ I+ L ++ A L + S
Sbjct: 330 QGV--DILKRLYHSKN----DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACR 383
Query: 421 RLLMSPHSN--VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT 478
R L+ P + + A L + D + + + L+ + S L V
Sbjct: 384 RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ-SCLYGVV 442
Query: 479 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKM 538
VNLC + + +IEL H + I K +++
Sbjct: 443 TTFVNLCNAYEKQEMLPEMIELAKFAK----QHIPEEHELDDVDFINKR----ITVLANE 494
Query: 539 KVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEK 598
+ + L L+ S + + G E ++ + + EK
Sbjct: 495 GITTA-LCALAKTESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEK 551
Query: 599 ICKEAVWFLSN--ITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDN--NNMVLH 654
+ A L+ IT + ++ ++ LQ+ + N N+
Sbjct: 552 GKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611
Query: 655 NVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQG------- 707
N ++ + + ++ Y + L AA MF
Sbjct: 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671
Query: 708 ------EFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDG 761
+ +T A A++ +T + L + L++ V +
Sbjct: 672 LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731
Query: 762 INNMLKMADAQVETL--ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED 819
I NM+ + + L +++E GL ++ + E+ ERY ++
Sbjct: 732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDN 791
Query: 820 NLGPQV 825
P V
Sbjct: 792 AEIPDV 797
Score = 97.2 bits (241), Expect = 7e-21
Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 30/304 (9%)
Query: 10 VELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQS- 68
L K + + + V A ++ K+ Q ++ A + + + A Q+
Sbjct: 501 CALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560
Query: 69 ARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV 128
AR ++ + ++ L+ L++ FE+ ALTN+AS + Q ++
Sbjct: 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRII 620
Query: 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIP 187
V LM H + A L N++ ++ + N V L + D
Sbjct: 621 KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE 680
Query: 188 ISFLRNVTWVIVNLCRNKDPPPSMSTIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246
+ + + I L L+ LI + +V
Sbjct: 681 TA--TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG---------- 728
Query: 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRA 306
+ + + + G + + + ++ ++ L L + A A
Sbjct: 729 ---------------IVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773
Query: 307 VGNI 310
+
Sbjct: 774 TQCL 777
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 125 bits (316), Expect = 4e-32
Identities = 36/255 (14%), Positives = 80/255 (31%), Gaps = 27/255 (10%)
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
S +P E++ + A L ++ +G L R L + +
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
+ +A +G + +++ V+ +G + LL + D + + I L R ++
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266
++ L + K+ V + + L
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQ-------------------------KLKVKSAFLLQ 192
Query: 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326
L G + + G+V L+ L+ + L A+ ++VT + + +
Sbjct: 193 NLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EP 250
Query: 327 LSHFPALLTHPKEKI 341
LL H + +
Sbjct: 251 ELGLEELLRHRCQLL 265
Score = 97.8 bits (243), Expect = 2e-22
Identities = 32/242 (13%), Positives = 83/242 (34%), Gaps = 7/242 (2%)
Query: 275 QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL 334
V+ + P+ + + + +L + ++ D L
Sbjct: 32 SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91
Query: 335 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAW 394
+ A + + A + V+ G L K++ L + +R A +
Sbjct: 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK----ALF 147
Query: 395 ALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN 454
A++ + A + + + +R + + ++ + L N++ P+ + + +
Sbjct: 148 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207
Query: 455 MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 514
MG+V L++ ++ + F +V + +L + P + E L L+ H
Sbjct: 208 MGMVQQLVALVRTEHS-PFHEHVLGALCSLVTDF--PQGVRECREPELGLEELLRHRCQL 264
Query: 515 VS 516
+
Sbjct: 265 LQ 266
Score = 96.6 bits (240), Expect = 4e-22
Identities = 38/240 (15%), Positives = 91/240 (37%), Gaps = 14/240 (5%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVP-----LADSTDE-DDIEKMAQVNLDMLVVEAA 54
+R + + ++ Q+R L ++ D D +++ ++L LV
Sbjct: 34 LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHL--LVGRYL 91
Query: 55 RKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERSDRPNLQFEAAWAL 113
L+ A Q I E ++ G L L+ L+R ++ +A +A+
Sbjct: 92 EAGAAGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 149
Query: 114 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173
+ + A + + + +R + + ++ + L N++ P+ + + +MG
Sbjct: 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209
Query: 174 VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 233
+V L++ ++ + F +V + +L + P + E L L+ H +
Sbjct: 210 MVQQLVALVRTEHS-PFHEHVLGALCSLVTDF--PQGVRECREPELGLEELLRHRCQLLQ 266
Score = 91.6 bits (227), Expect = 2e-20
Identities = 27/262 (10%), Positives = 70/262 (26%), Gaps = 42/262 (16%)
Query: 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
A L ++ +G L R L + + + +A +G + +++
Sbjct: 59 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 118
Query: 451 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 510
V+ +G + LL + D + + I L R ++ ++ L +
Sbjct: 119 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178
Query: 511 HDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
+ K+K L +
Sbjct: 179 QVQKL---------------------KVKSAFLLQNLLVGHP------------------ 199
Query: 571 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630
E + + + AL+ + + L ++ V+ + L +
Sbjct: 200 ---EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEE 256
Query: 631 IANLQKRSCKILNKYLDNNNMV 652
+ + + + +Y +
Sbjct: 257 LLRHRCQLLQQHEEYQEELEFC 278
Score = 78.5 bits (193), Expect = 6e-16
Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 31/232 (13%)
Query: 591 LLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNN 650
L + A + + A + V+ G L K++ L + D +
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR----------DACD 139
Query: 651 MVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQ 710
V L +S ++ E L+ GF++ + M Q +
Sbjct: 140 TVRVKALFAISCLVREQEA----------GLLQFLRLDGFSVLM-----RAMQ--QQVQK 182
Query: 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD 770
+ ++A+ + NL + G+ + L G++ L+ + + + VL + +++
Sbjct: 183 LKVKSAFLLQNL-LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241
Query: 771 AQVETLANMIEECGGL--DKIEMLQNHE-NVEIYKLAYDIIERYFSEVEDED 819
V L + ++LQ HE E + +++ FS D+
Sbjct: 242 QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDS 293
Score = 78.1 bits (192), Expect = 7e-16
Identities = 27/245 (11%), Positives = 75/245 (30%), Gaps = 19/245 (7%)
Query: 143 PHSNVCEQAVWALGNIIGDGPQLRDYV-INMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
HS+ + G+ Q++ + + +PP + ++ +L
Sbjct: 8 HHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADL 67
Query: 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISKILV------ 252
C N D + + + + + + L + + I + ++
Sbjct: 68 CENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR 127
Query: 253 ---------SKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
+ + V ++A+S L + + L+ + + K++ S
Sbjct: 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
+ N++ G E + + + AL+ + + L ++ V+
Sbjct: 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247
Query: 364 IDAGL 368
+ L
Sbjct: 248 REPEL 252
Score = 53.1 bits (127), Expect = 2e-07
Identities = 26/223 (11%), Positives = 74/223 (33%), Gaps = 10/223 (4%)
Query: 426 PHSNVCEQAVWALGNIIGDGPQLRDYV-INMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 484
HS+ + G+ Q++ + + +PP + ++ +L
Sbjct: 8 HHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADL 67
Query: 485 CRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISKILVSKMKVC 541
C N D + + + + + + L + + I + V +
Sbjct: 68 CENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI-QEQVLGLGAL 126
Query: 542 SRYLYYLSHNSGPMSCQKKQHSIYM--CVSPGTDEQTQVILNCDALSHFPALLTHPKEKI 599
+ L L ++ + + K +++ C+ + L D S + +K+
Sbjct: 127 RKLLRLLDRDA-CDTVRVK--ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183
Query: 600 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKIL 642
++ + L N+ G+ + G++ +++A ++
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFH 226
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 108 bits (270), Expect = 1e-26
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 14/224 (6%)
Query: 90 LPVLVECLERSDR-PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 148
L V LE P+ AA + + S + V + L+LL + +V
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 149 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208
AL N++ + + V + VP LL +K + + +T ++ NL N
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268
M + AL L + I + S + + I + L +
Sbjct: 130 NLM-----ITEALLTLTEN------IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178
Query: 269 TDGGNDQIQMVID-SGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311
+ G D + + G++ SL+ + Q +A N V
Sbjct: 179 SSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221
Score = 83.8 bits (207), Expect = 3e-18
Identities = 26/196 (13%), Positives = 65/196 (33%), Gaps = 17/196 (8%)
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321
+ + ++ + V + L+ LL + VQ A A+ N+V ++ +
Sbjct: 31 ATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90
Query: 322 LNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAG--LLPKIIANLQK 378
+ + +L + K+ L N+++ ++ + + +A L II
Sbjct: 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSG 150
Query: 379 VGRIVLR-------PNLQFEAAWALTNIASGTSAQTQEVVAA-GAVPLFLRLLMSPHSNV 430
++ + L N++S + + + G + + + ++
Sbjct: 151 WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY 210
Query: 431 C------EQAVWALGN 440
E V L N
Sbjct: 211 QPDDKATENCVCILHN 226
Score = 83.1 bits (205), Expect = 6e-18
Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 30/215 (13%)
Query: 271 GGNDQIQMVIDSGVVPSLIPLL--SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328
G N ++M + + +L H +A+ + + E + + +
Sbjct: 1 GSNADMEMTL-----ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGIL 55
Query: 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNL 388
LL E + + L N+ + V + +P+++ L++
Sbjct: 56 KLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR----DLET 111
Query: 389 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS----------------NVCE 432
+ + L N++S + ++ A+ ++ P S ++
Sbjct: 112 KKQITGLLWNLSSNDKL--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169
Query: 433 QAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIK 466
L N+ G R + G++ L+ +++
Sbjct: 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
Score = 81.5 bits (201), Expect = 2e-17
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 369 LPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 428
L + ++ L+ + P+ AA + + S + V + L+LL +
Sbjct: 10 LERAVSMLEADHML---PSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 429 NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488
+V AL N++ + + V + VP LL +K + + +T ++ NL N
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 489 D 489
Sbjct: 127 K 127
Score = 77.3 bits (190), Expect = 5e-16
Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 24/197 (12%)
Query: 336 HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395
H A F+ + + V + K++ L+ ++Q A
Sbjct: 21 HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-----NEDVQRAVCGA 75
Query: 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVIN 454
L N+ + EV VP L++L +Q L N+ + ++
Sbjct: 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK--LKNLMI 133
Query: 455 MGVVPPLLSFI---------------KPDIPISFLRNVTWVIVNLCR-NKDPPPSMSTII 498
+ L I + NVT + N+ D +M
Sbjct: 134 TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD 193
Query: 499 ELLPALNILIHHHDTSV 515
L+ +L +
Sbjct: 194 GLIDSLVHYVRGTIADY 210
Score = 55.0 bits (132), Expect = 2e-08
Identities = 20/151 (13%), Positives = 54/151 (35%), Gaps = 22/151 (14%)
Query: 51 VEAARKDNPELQLLAVQSARKL-LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
++ + N ++Q + R L + N + +P L++ L+++ + +
Sbjct: 58 LQLLKVQNEDVQRAVCGALRNLVFEDNDN--KLEVAELNGVPRLLQVLKQTRDLETKKQI 115
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS----------------NVCEQAVW 153
L N++S + ++ A+ ++ P S ++
Sbjct: 116 TGLLWNLSSNDKL--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG 173
Query: 154 ALGNIIGDGPQLRDYVINM-GVVPPLLSFIK 183
L N+ G R + G++ L+ +++
Sbjct: 174 CLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
Score = 52.6 bits (126), Expect = 1e-07
Identities = 16/180 (8%), Positives = 47/180 (26%), Gaps = 13/180 (7%)
Query: 569 SPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP 628
E + + + LL E + + L N+ + V + +P
Sbjct: 38 CFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVP 97
Query: 629 KIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688
+++ L++ + + + N + + + + +
Sbjct: 98 RLLQVLKQTR----------DLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIP 147
Query: 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLS 748
+F + N++ +G + A +G+I +
Sbjct: 148 FSGWPEGDYPKAN---GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
Score = 43.8 bits (103), Expect = 8e-05
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 700 QLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVL 759
++ AA I + + ++ Q I LL ++ V + V
Sbjct: 15 SMLEADHMLPSRISAAATFIQHECF-QKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVC 73
Query: 760 DGINNMLKMADAQVETLANMIEECGGLDK-IEMLQNHENVEIYKLA 804
+ N++ + + E G+ + +++L+ ++E K
Sbjct: 74 GALRNLVFEDNDNKLE----VAELNGVPRLLQVLKQTRDLETKKQI 115
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 73.9 bits (181), Expect = 9e-14
Identities = 59/417 (14%), Positives = 130/417 (31%), Gaps = 48/417 (11%)
Query: 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 102
+ L D P ++ A + + +++ I +P+ ++
Sbjct: 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI----IPMFSNLA-SDEQ 216
Query: 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162
+++ A A NIA E + A +P + V +
Sbjct: 217 DSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ--- 270
Query: 163 PQLRDYVINMGVVPPLLSFIK---PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLP 219
+ + +VP + +K ++ + V NL + MS ++LP
Sbjct: 271 KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS---QILP 327
Query: 220 ALNILIHHHDTSV------SIYLWLSIIEKNPQISKILVSKMKILVDTVW-----ALSYL 268
+ L+ + V I I+ K+ I +L + L D +S L
Sbjct: 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL 387
Query: 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328
+ ++P+++ L + +V+ A + + + + + S
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNS 444
Query: 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ---KVGRIVLR 385
A L I + A L + + ++PK++A + R+
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT---IIPKVLAMSGDPNYLHRMT-- 499
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442
+ + ++ Q++ +P LR+ P +NV +L I
Sbjct: 500 ------TLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
Score = 30.8 bits (69), Expect = 2.1
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 148
+LP ++ N++F A +L I + + P+ +L +V
Sbjct: 520 MLPTVLRMA-GDPVANVRFNVAKSLQKIGPILD---NSTLQSEVKPILEKLTQDQDVDVK 575
Query: 149 EQAVWALGNI 158
A AL +
Sbjct: 576 YFAQEALTVL 585
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 68.7 bits (168), Expect = 8e-13
Identities = 42/351 (11%), Positives = 83/351 (23%), Gaps = 98/351 (27%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
L L+ + +A L AV L + + +
Sbjct: 25 DDELFRLLD-DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRD 72
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
+ LG I + D V L + D C+
Sbjct: 73 IGAFILGQ-IKICKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS 126
Query: 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
+++ I T+V T +A+S +
Sbjct: 127 P-----KIVEQSQITAFDKSTNVRRA-------------------------TAFAISVIN 156
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329
D +P LI LL V+ + A+ +
Sbjct: 157 -----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDC 196
Query: 330 FPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQ 389
F +L E++ EA+ LS ++ + + D + + +
Sbjct: 197 FVEMLQDKNEEVRIEAIIGLSYR--KDKRVLSVLCDE----------------LKKNTVY 238
Query: 390 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALG 439
+ A + +P+ +L + + A+ L
Sbjct: 239 DDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278
Score = 57.9 bits (140), Expect = 3e-09
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 26/175 (14%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
V I S K + +G I + V + L++ L
Sbjct: 52 GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVF---NILNN--MALNDKSAC 106
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400
+ A+ + + + ++ + N++ A+A++ I
Sbjct: 107 VRATAIEST-----AQRCKKNPIYSPKIVEQSQITAFDK-----STNVRRATAFAISVIN 156
Query: 401 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
+PL + LL P+ +V A +A+ D +RD + M
Sbjct: 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEM 200
Score = 48.3 bits (115), Expect = 4e-06
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 31/140 (22%)
Query: 52 EAAR-----KDNPELQLLAVQSARKLLSSDKNPP-----IEALIHSG---------ILPV 92
A K + + + +DK+ IE+ I+
Sbjct: 73 IGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQ 132
Query: 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 152
N++ A+A++ I +PL + LL P+ +V A
Sbjct: 133 SQITAFDKS-TNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAA 180
Query: 153 WALGNIIGDGPQLRDYVINM 172
+A+ D +RD + M
Sbjct: 181 FAININKYDNSDIRDCFVEM 200
Score = 45.6 bits (108), Expect = 3e-05
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 55 RKDNPELQLLAVQSARKLLSSDKNPP-----IEALIHSG---ILPVLVECLERSDRPNLQ 106
K NP V+ ++ DK+ A+ +P+L+ L+ + +++
Sbjct: 119 CKKNPIYSPKIVEQSQITAF-DKSTNVRRATAFAISVINDKATIPLLINLLKDPN-GDVR 176
Query: 107 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AA+A+ S F+ +L + V +A+ L
Sbjct: 177 NWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR 219
Score = 28.6 bits (64), Expect = 9.1
Identities = 6/51 (11%), Positives = 10/51 (19%), Gaps = 9/51 (17%)
Query: 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
+A+ RLL +S + L
Sbjct: 9 KASKEYGLYNQC---------KKLNDDELFRLLDDHNSLKRISSARVLQLR 50
>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.50A {Homo sapiens}
Length = 44
Score = 62.1 bits (151), Expect = 1e-12
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNV 27
MRRRR EV VELRK K+++ + KRRNV
Sbjct: 17 MRRRRIEVNVELRKAKKDDQMLKRRNV 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 1e-11
Identities = 110/710 (15%), Positives = 206/710 (29%), Gaps = 220/710 (30%)
Query: 39 EKMAQVNLDMLVVEAARKDNPEL--QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVEC 96
+ + V D V KD ++ +L+ + ++ S + + L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK--DAVSGTL------RLFWT 70
Query: 97 LERSDR--------PNLQFEAAWALTNIAS---GTSAQTQEVVAA-----GAVPLFLRLL 140
L L+ + ++ I + S T+ + +F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---- 126
Query: 141 MSPHSNVC-EQAVWALGNIIGDGPQLRD--YVI--NMG------VVPPLLSFIKPDIPIS 189
+ + NV Q L + +LR V+ + V + K +
Sbjct: 127 -AKY-NVSRLQPYLKLRQAL---LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 190 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-----HDTSVSIYLWLSIIEKN 244
F + W+ + C + + T++E+L L I D S +I L + I+
Sbjct: 182 F--KIFWLNLKNCNSPE------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA- 232
Query: 245 PQISKILVSKMK----ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQ 300
++ ++L SK +++ V ++ + + +
Sbjct: 233 -ELRRLLKSKPYENCLLVLLNVQ-----------------NAKAWNAF-------NLSCK 267
Query: 301 ---TASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
T + V + ++ T + L+ H LT E L +
Sbjct: 268 ILLTTRFKQVTDFLSAA-TTTHISLD-----HHSMTLTPD------EVKSLLLKY-LDCR 314
Query: 358 AQ---VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414
Q + + IIA + G N + LT I
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTI--------------- 358
Query: 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFL 474
+ L +L + + R + V PP IP L
Sbjct: 359 -IESSLNVL--------------------EPAEYRKMFDRLSVFPP-----SAHIPTILL 392
Query: 475 RNVTW---------VIVNLCRN-----KDPPPSMSTI----IELLPALNILIHHHDTSVS 516
++ W V+VN K P S +I +EL L H + V
Sbjct: 393 -SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 517 IYLWLSIIEKNPQISKILVSKMKVCSRYLY-YLSHNSGPMSCQKKQHSIYMCVSPGTDEQ 575
Y +I + I +Y Y ++ H H +
Sbjct: 452 HY---NIPKTFDSDDLIPPYL----DQYFYSHIGH-----------HLKNIEHPERMTLF 493
Query: 576 TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635
V L+ L ++KI ++ TA N + +L + L
Sbjct: 494 RMVFLDFRFL----------EQKIRHDS-------TAWNAS-------GSILN-TLQQL- 527
Query: 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVA 685
K Y+ +N+ ++ + FL +EE +I S + T LR+A
Sbjct: 528 ----KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY--TDLLRIA 571
Score = 60.6 bits (146), Expect = 2e-09
Identities = 100/675 (14%), Positives = 201/675 (29%), Gaps = 190/675 (28%)
Query: 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVW- 263
KD +I+ +I++ S ++ L+ +++ K ++ + V ++ + ++ +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 264 --ALSYLTDGGNDQIQMVIDS-----GVVPSLIPLL---SHKEVKVQTA--SLRAVGNIV 311
+ + +M I+ +K++ A LR N++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 312 ----TGTDEQT---QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364
G+ + V L+ + W + N + V+
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDF-----------KIFW----LNLKNCNSPETVL 199
Query: 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424
+ LQK+ + PN + ++ +S + + A RLL
Sbjct: 200 E---------MLQKLLYQ-IDPNWT-----SRSDHSSNIKLRIHSIQAE-----LRRLLK 239
Query: 425 S---PHS-----NVCEQAVW-ALGN-----IIGDGPQLRDYVINMGVVPPLLSFIK---- 466
S + NV W A + Q+ D++ L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 467 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEK 526
PD S L CR +D P + T LSII +
Sbjct: 300 PDEVKSLLLKYLD-----CRPQDLPREVLTTNPRR-------------------LSIIAE 335
Query: 527 NPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCV---SPGTDEQTQVILNCD 583
+ + + + N C K I + P E ++ D
Sbjct: 336 -------SIRDGL--ATWDNWKHVN-----CDKLTTIIESSLNVLEP--AEYRKMF---D 376
Query: 584 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILN 643
LS FP P + +W V+ ++ L K S +
Sbjct: 377 RLSVFPPSAHIPTILLSL--IW--------FDVIKSDVMV------VVNKLHKYSL--VE 418
Query: 644 KYLDNNNMVLHNVLLQMSVFLQN--------VEERMIYSSFQKTSPLRVAATGGFTLFAF 695
K + + + ++ L++ V L+N V+ I +F + F ++
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSH 476
Query: 696 ISR-------------FQLMF--FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVI 740
I F+++F F F QK I D A ++
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDF---RFLEQK----------I--RHDSTAWNASGSIL 521
Query: 741 PPFCDLLS-----CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH 795
L C + + +++ I + L ++E N+I D + +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLP----KIEE--NLIC-SKYTDLLRIALMA 574
Query: 796 ENVEIYKLAYDIIER 810
E+ I++ A+ ++R
Sbjct: 575 EDEAIFEEAHKQVQR 589
Score = 45.2 bits (106), Expect = 8e-05
Identities = 45/271 (16%), Positives = 84/271 (30%), Gaps = 75/271 (27%)
Query: 31 DSTDEDDIEKMAQVNLDMLVVEAARKD---NPELQLLAVQSA-RKLLSSDKNPPIEALI- 85
++ E +E + ++ + +R D N +L++ ++Q+ R+LL S L+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLV 249
Query: 86 -----HSGILPVL-VEC----LERSDRPNLQFEAAWALTNIASG------TSAQTQEVV- 128
++ + C R + F +A T+I+ T + + ++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 129 -------------AAGAVPLFLRL---LMSPHSNVCEQ----AVWALGNIIG------DG 162
P L + + + L II +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW---------VIVNLCRN-----KDPP 208
+ R + V PP IP L ++ W V+VN K P
Sbjct: 369 AEYRKMFDRLSVFPP-----SAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 209 PSMSTI----IELLPALNILIHHHDTSVSIY 235
S +I +EL L H + V Y
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Score = 31.4 bits (70), Expect = 1.9
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 19/81 (23%)
Query: 741 PPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKI--EMLQNHENV 798
F D CKD V D ++L +++ + + G ++ +L E
Sbjct: 27 DAFVDNFDCKD------VQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSKQEE- 77
Query: 799 EIYKLAYDIIERYFSEVEDED 819
+++++ EV +
Sbjct: 78 --------MVQKFVEEVLRIN 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 1e-09
Identities = 69/449 (15%), Positives = 128/449 (28%), Gaps = 167/449 (37%)
Query: 35 EDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI-LPVL 93
D I+ A+ L L+ + Q L + L + P + L+ I P++
Sbjct: 185 GDLIKFSAET-LSELIRTTLDAEKVFTQGLNILEW--LENPSNTPDKDYLLSIPISCPLI 241
Query: 94 VECLERSDRPNLQFEAAWALT------------NIASGTSAQTQEVVAAGAV-------- 133
+ +Q A + +T + G + +Q +V A A+
Sbjct: 242 --GV-------IQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 134 -----PLFLRLLMS---------PHSNVCEQAVW-ALGNIIGDG---PQLRDYVINMGVV 175
+ +L P++++ + +L N +G P L + N+
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN--NEGVPSPMLS--ISNLT-Q 346
Query: 176 PPLLSFIK------P---DIPISFLRN------VTWVIVNLCRNKDPPPSMSTIIELLPA 220
+ ++ P + IS L N V+ PP S L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVS----------GPPQS-------LYG 388
Query: 221 LNILIHHHDTSVSIYLWLSIIEKNP----QISKILVSKMKILVDTVWAL--------SYL 268
LN+ + K P Q S+I S+ K+ + L L
Sbjct: 389 LNLTLRK--------------AKAPSGLDQ-SRIPFSERKLKFSNRF-LPVASPFHSHLL 432
Query: 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLR-AVGNIVTGTDEQTQVILNCDAL 327
+ L V ++ V + G+D +V+ +
Sbjct: 433 VP-------------ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD--LRVLSGSISE 477
Query: 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPN 387
++ P W Q + ++D G P +G + R N
Sbjct: 478 RIVDCIIRLP-------VKW-----ETTTQFKATHILDFG--P---GGASGLGVLTHR-N 519
Query: 388 LQFEAAWALTNIASGTSAQTQEVVAAGAV 416
GT + V+ AG +
Sbjct: 520 KD------------GTGVR---VIVAGTL 533
Score = 60.1 bits (145), Expect = 3e-09
Identities = 112/679 (16%), Positives = 185/679 (27%), Gaps = 260/679 (38%)
Query: 287 SLIPL-LSHKEVKV-------------Q-----TASLRAVGNIVTGTDEQTQVILNCDAL 327
S PL LSH ++ Q L DE T + +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA---ELV 61
Query: 328 SHFPALLTHPKEK--------ICKEAVW-FLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378
F ++ E + + F + GN + A+ A LL + L K
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--IHALA-AKLLQENDTTLVK 118
Query: 379 VGRIVLRPNLQFEAAWALTNIASGTSAQTQ--EVVAAGAVPLF---------------LR 421
++ + A + + + V G L LR
Sbjct: 119 TKELIK----NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 422 LL-MSPHSNV---CEQAVWALGNII----------GDGPQLRDYVINMGVVPP---LLSF 464
L + H V + + L +I G + +++ N P LLS
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS- 233
Query: 465 IKPDIPISF-LRNVT----WVIVNLCRNKDPPPSMSTIIELLPALN-ILIHHHDTSVSIY 518
IPIS L V +V+ + P EL L H ++
Sbjct: 234 ----IPISCPLIGVIQLAHYVVT--AKLLGFTPG-----ELRSYLKGATGHSQGLVTAVA 282
Query: 519 L-----WLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTD 573
+ W S + K + L+++ G + C + P T
Sbjct: 283 IAETDSWESFFV---SVRKAI--------TVLFFI----G-VRCYE--------AYPNT- 317
Query: 574 EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 633
+L P++L E LS I+ Q QVQ ++
Sbjct: 318 ----------SLP--PSILEDSLENNEGVPSPMLS-ISNLTQEQVQDYVNK--------- 355
Query: 634 LQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGF--T 691
N +L Q+ + L N + ++ V+ G +
Sbjct: 356 --------TNSHLPAGK--------QVEISLVNGAKNLV-----------VS---GPPQS 385
Query: 692 LFAFISRFQLMFFPQGEFQTQK---EAAWAISN--LTISGNRDQVAKLVQEGVIPPF-CD 745
L+ + P G Q++ E SN L ++ PF
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS---------------PFHSH 430
Query: 746 LLS------CKDAQVIQVVL-------------DGINNMLKMADAQVETLANMI------ 780
LL KD V DG +++ ++ + E + + I
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSISERIVDCIIRLPVK 489
Query: 781 -EEC-------------GGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDNLGPQVT 826
E GG + +L H N + G +V
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVL-THRNKD--------------------GTGVRVI 528
Query: 827 DGGFELDQNPSIPNE-GFK 844
G LD NP ++ GFK
Sbjct: 529 VAG-TLDINPD--DDYGFK 544
Score = 46.6 bits (110), Expect = 3e-05
Identities = 42/306 (13%), Positives = 87/306 (28%), Gaps = 112/306 (36%)
Query: 516 SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQ 575
SI L I+ NP I H G + +++ M D +
Sbjct: 1660 SI---LDIVINNPVNLTI----------------HFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 576 TQVILNCDALSHFPALLT--HPKEKICKEAVWFLSNITAGNQ--------AQVQAVIDAG 625
+ ++ T K + + T Q A + + G
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLL---------SATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 626 LLPKIIANLQKRSCKILNKYLDNNNMVL--HNVLLQMSVFLQNVEERMIYSSFQKTSPLR 683
L+P + H S+ E Y++ L
Sbjct: 1752 LIPA--------------------DATFAGH------SL-----GE---YAA------L- 1770
Query: 684 VAATGGFTLFAFIS----RFQLM--FFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQE 737
+ ++ + + R M P+ E AI N +VA +
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-------NPGRVAASFSQ 1823
Query: 738 GVIPPFCDLLSCKDAQVIQVVLDGIN-NMLKMADAQ---------VETLANMIEECGGLD 787
+ + + + ++++V N N + + Q ++T+ N++ L
Sbjct: 1824 EALQYVVERVGKRTGWLVEIV----NYN---VENQQYVAAGDLRALDTVTNVLNFI-KLQ 1875
Query: 788 KIEMLQ 793
KI++++
Sbjct: 1876 KIDIIE 1881
Score = 34.3 bits (78), Expect = 0.25
Identities = 41/263 (15%), Positives = 67/263 (25%), Gaps = 106/263 (40%)
Query: 233 SIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ------IQMVIDSGVVP 286
SI L I+ NP L+ G + M+ ++ V
Sbjct: 1660 SI---LDIVINNPV-----------------NLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ------TQVILNCDALSHFPALLTHPK-- 338
L KE+ + S TQ PAL K
Sbjct: 1700 KLKTEKIFKEINEHSTSY-----TFRSEKGLLSATQFTQ-----------PALTLMEKAA 1743
Query: 339 -EKICKEAVWFLSNITAG----------NQAQVQAVIDA-------GLL-----PKIIAN 375
E + + + AG + A V ++ G+ P+
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 376 LQKVGRIVLRPN---LQFEAAWALTNIASGTSAQT-------------QEVVAAGAVPLF 419
G I + P F AL + +T Q+ VAAG +
Sbjct: 1804 RSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL--- 1859
Query: 420 LRLLMSPHSNVCEQAVWALGNII 442
+A+ + N++
Sbjct: 1860 -------------RALDTVTNVL 1869
Score = 30.0 bits (67), Expect = 4.5
Identities = 30/219 (13%), Positives = 58/219 (26%), Gaps = 93/219 (42%)
Query: 1 MRRRRNEVTVE--LRKNKREETLQKRRNVPLADSTDEDDIEKM-----AQVNLDMLVVEA 53
+R + + E + + E + K N T + + Q + ++E
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA--LTLMEK 1741
Query: 54 ARKDNPELQLLAVQSARKLLSSDKNPPIEALI--HS-----------GILPV-----LV- 94
A A + L S P +A HS ++ + +V
Sbjct: 1742 A--------------AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 95 -------ECLERSD-----------RPN---LQFEAAWALTNIASGTSAQT--------- 124
+ R + P F AL + +T
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIVNY 1846
Query: 125 ----QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159
Q+ VAAG + +A+ + N++
Sbjct: 1847 NVENQQYVAAGDL----------------RALDTVTNVL 1869
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 57.8 bits (140), Expect = 2e-09
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ ++ A+G I G + + ++ L
Sbjct: 79 DERAVEPLIKALKDEDGWVRQSAAVALGQI--GDERAVEPLI---------KALKDEDWF 127
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ A + L I G++ V+ +I A L+ ++ AA AL
Sbjct: 128 VRIAAAFALGEI--GDERAVEPLIKA-----------------LKDEDGWVRQSAADALG 168
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I +L + + AV L
Sbjct: 169 EIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201
Score = 57.0 bits (138), Expect = 3e-09
Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ A+ A+G I G + A+ L
Sbjct: 48 DERAVEPLIKALKDEDAWVRRAAADALGQI--GDER---------AVEPLIKALKDEDGW 96
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA+AL
Sbjct: 97 VRQSAAVALGQI--GDERAVEPLIKA-----------------LKDEDWFVRIAAAFALG 137
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V + A ALG I
Sbjct: 138 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 53.9 bits (130), Expect = 3e-08
Identities = 49/271 (18%), Positives = 79/271 (29%), Gaps = 84/271 (30%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+ + ++ L+ D ++ AA+AL I AV ++ L + V
Sbjct: 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPP 208
A ALG IGD V PL+ +K D ++R V L + D
Sbjct: 69 AAADALGQ-IGDER----------AVEPLIKALKDED---GWVRQ--SAAVALGQIGDE- 111
Query: 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268
+ L + D V I +AL +
Sbjct: 112 -------RAVEPLIKALKDEDWFVRIA-------------------------AAFALGEI 139
Query: 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328
D V LI L ++ V+ ++ A+G I G + +
Sbjct: 140 G-----------DERAVEPLIKALKDEDGWVRQSAADALGEI--GGER---------VRA 177
Query: 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
L K AV +L + N
Sbjct: 178 AMEKLAETGTGFARKVAVNYLETHKSFNHHH 208
Score = 52.4 bits (126), Expect = 9e-08
Identities = 34/164 (20%), Positives = 51/164 (31%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V I L V+ A+ A+G I G + A+ L
Sbjct: 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKI--GDER---------AVEPLIKALKDEDAW 65
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA AL
Sbjct: 66 VRRAAADALGQI--GDERAVEPLIKA-----------------LKDEDGWVRQSAAVALG 106
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V A +ALG I
Sbjct: 107 QIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139
Score = 48.9 bits (117), Expect = 2e-06
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 65 AVQSARKLLSSDKNPPI-----EALIHSG---ILPVLVECLERSDRPNLQFEAAWALTNI 116
AV+ K L D++ + +AL G + L++ L+ D ++ AA AL I
Sbjct: 51 AVEPLIKALK-DEDAWVRRAAADALGQIGDERAVEPLIKALKDED-GWVRQSAAVALGQI 108
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AV ++ L V A +ALG I
Sbjct: 109 GD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139
Score = 45.4 bits (108), Expect = 2e-05
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 31/127 (24%)
Query: 51 VEAARKDNPELQLLAVQSARKL-----------LSSDKNPP-----IEALIHSG---ILP 91
++A + ++ ++ A + ++ D++ AL G +
Sbjct: 56 IKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVE 115
Query: 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 151
L++ L+ D ++ AA+AL I AV ++ L V + A
Sbjct: 116 PLIKALKDED-WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSA 163
Query: 152 VWALGNI 158
ALG I
Sbjct: 164 ADALGEI 170
Score = 43.9 bits (104), Expect = 8e-05
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 24/110 (21%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+++A + ++ +++ A + ++ + + L++ L+ D ++
Sbjct: 116 PLIKALKDEDWFVRIAAAFALGEI----GDERA--------VEPLIKALKDED-GWVRQS 162
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AA AL I +L + + AV L
Sbjct: 163 AADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 57.3 bits (139), Expect = 2e-09
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ ++ A+G I G + + ++ L
Sbjct: 74 DERAVEPLIKALKDEDGWVRQSAAVALGQI--GDERAVEPLI---------KALKDEDWF 122
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ A + L I G++ V+ +I A L+ ++ AA AL
Sbjct: 123 VRIAAAFALGEI--GDERAVEPLIKA-----------------LKDEDGWVRQSAADALG 163
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I +L + + AV L
Sbjct: 164 EIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196
Score = 55.8 bits (135), Expect = 6e-09
Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ A+ A+G I G + A+ L
Sbjct: 43 DERAVEPLIKALKDEDAWVRRAAADALGQI--GDER---------AVEPLIKALKDEDGW 91
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA+AL
Sbjct: 92 VRQSAAVALGQI--GDERAVEPLIKA-----------------LKDEDWFVRIAAAFALG 132
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V + A ALG I
Sbjct: 133 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 53.5 bits (129), Expect = 4e-08
Identities = 34/164 (20%), Positives = 51/164 (31%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V I L V+ A+ A+G I G + A+ L
Sbjct: 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKI--GDER---------AVEPLIKALKDEDAW 60
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA AL
Sbjct: 61 VRRAAADALGQI--GDERAVEPLIKA-----------------LKDEDGWVRQSAAVALG 101
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V A +ALG I
Sbjct: 102 QIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134
Score = 50.8 bits (122), Expect = 3e-07
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 32/145 (22%)
Query: 29 LADSTDEDDIEKMAQV--NLDMLVVEAA-----RKDNPELQLLAVQSARKLLSSDKNPPI 81
TD + +E + + V AA + + AV+ K L D++ +
Sbjct: 7 HHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER----AVEPLIKALK-DEDAWV 61
Query: 82 -----EALIHSG---ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 133
+AL G + L++ L+ D ++ AA AL I AV
Sbjct: 62 RRAAADALGQIGDERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAV 109
Query: 134 PLFLRLLMSPHSNVCEQAVWALGNI 158
++ L V A +ALG I
Sbjct: 110 EPLIKALKDEDWFVRIAAAFALGEI 134
Score = 44.2 bits (105), Expect = 6e-05
Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+++A + ++ +++ A + ++ + A+ L++ L+ D ++
Sbjct: 111 PLIKALKDEDWFVRIAAAFALGEI----GDE--RAV------EPLIKALKDED-GWVRQS 157
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AA AL I +L + + AV L
Sbjct: 158 AADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196
Score = 43.8 bits (104), Expect = 7e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+ L++ L+ D ++ AA+AL I AV ++ L V +
Sbjct: 109 VEPLIKALKDED-WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQ 156
Query: 150 QAVWALGNI 158
A ALG I
Sbjct: 157 SAADALGEI 165
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 55.9 bits (134), Expect = 1e-08
Identities = 42/248 (16%), Positives = 85/248 (34%), Gaps = 27/248 (10%)
Query: 18 EETLQKRRNVPLADSTDEDDIE-KMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSD 76
EE R + + ++ I K + L L+ E D + A+ + +
Sbjct: 5 EEEFDIREALANGEHLEKILIMAKYDESVLKKLI-ELLDDDLWTVVKNAISIIMVI--AK 61
Query: 77 KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136
+ + +L L L++S+ L E A A +A + +P+
Sbjct: 62 TREDL----YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE-----LVKSMIPVL 112
Query: 137 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
+AL I P L ++ +LS + ++ L
Sbjct: 113 FANYRIGDEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL----N 166
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISKILVS 253
I + N S + LP + L+H D V ++ + + N ++ K+++
Sbjct: 167 FIEAMGEN-----SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK 221
Query: 254 KMKILVDT 261
+++ L DT
Sbjct: 222 RLEELNDT 229
Score = 45.1 bits (106), Expect = 4e-05
Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 38/198 (19%)
Query: 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICK 343
V+ LI LL V ++ + I ++ + +L L F L + +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML--KKL--FSLLKKSEAIPLTQ 88
Query: 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL------------------- 384
E + V+++I L +K V
Sbjct: 89 EIAKAFGQMAKEKPELVKSMIPV-LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 385 ---------RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 435
+ A + + + +P + LL V AV
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEIVRASAV 202
Query: 436 WALGNIIGDGPQLRDYVI 453
AL ++ +LR VI
Sbjct: 203 EALVHLATLNDKLRKVVI 220
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 55.2 bits (132), Expect = 7e-08
Identities = 34/267 (12%), Positives = 78/267 (29%), Gaps = 27/267 (10%)
Query: 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI-- 182
+ ++ + R + + N +Q V + NI + G V +L ++
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLAN 509
Query: 183 KPDIPISFLRNVTWVIVNLCRNKDPP--PSMSTIIELLPALNILIHHHDTSVSIYLWLSI 240
K DI + + +P + + +P L L+ L
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569
Query: 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ-----MVIDSGVVPSLIPLLSHK 295
K + L+ AL+ L + +V ++ L+ +
Sbjct: 570 QIKLTDNYEALL-----------ALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618
Query: 296 EVKVQTASLRAVGNIVTGTDEQTQVILN------CDALSHFPALLTHPKEKICKEAVWFL 349
V +Q ++L + N+++ N + LL + +
Sbjct: 619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678
Query: 350 SNITAGNQAQVQAVIDAGLLPKIIANL 376
+NI + ++ L + +
Sbjct: 679 ANIATTIPLIAKELLTKKELIENAIQV 705
Score = 41.7 bits (97), Expect = 0.001
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 18/184 (9%)
Query: 277 QMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN--CDALSHFPALL 334
+ ++ + ++ L + + + +R + NI + Q+ + + A
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK 510
Query: 335 THPKEKICKEAVWFLSNI-------TAGNQAQVQAVID--AGLLPKIIANLQKVGRIVLR 385
E I L+ + + I LLP+ +
Sbjct: 511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570
Query: 386 PNL--QFEAAWALTNIASGTSAQTQEVV-----AAGAVPLFLRLLMSPHSNVCEQAVWAL 438
L +EA ALTN+AS ++ +EV L++ + + + +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630
Query: 439 GNII 442
N++
Sbjct: 631 SNMM 634
Score = 40.2 bits (93), Expect = 0.003
Identities = 23/172 (13%), Positives = 57/172 (33%), Gaps = 22/172 (12%)
Query: 10 VELRKNKREETLQKRRNVPLADSTDEDDIEKMAQ---VNLDMLVVEAARKDNPELQLLAV 66
N Q+ + + ++ I ++AQ V + + + + +++L
Sbjct: 463 KREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522
Query: 67 QS-ARKLLSSDKN------------PPIEALIHSGILPVLVECLERSDRPNLQ-FEAAWA 112
++ R L+ ++ P + L+ +EA A
Sbjct: 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLA 582
Query: 113 LTNIASGTSAQTQEVV-----AAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159
LTN+AS ++ +EV L++ + + + + N++
Sbjct: 583 LTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634
Score = 35.5 bits (81), Expect = 0.090
Identities = 23/202 (11%), Positives = 54/202 (26%), Gaps = 42/202 (20%)
Query: 615 QAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYS 674
+ ++ L+ + + S N + ++ ++ ++
Sbjct: 447 LFNEKYILRTELISFLKREMHNLS--------PNCKQQVVRIIYNIT---RSKNFIP--- 492
Query: 675 SFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQV-AK 733
++A G + L + A++ + I N + K
Sbjct: 493 --------QLAQQGAVKIILEY----LANKQDIGEPIRILGCRALTRMLIFTNPGLIFKK 540
Query: 734 LVQEGVIPPFCDLLSCKDAQVIQVV--------------LDGINNMLKMADAQVETLA-N 778
IP +LL + L + N+ + E + +
Sbjct: 541 YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600
Query: 779 MIEECGGLDKIEMLQNHENVEI 800
++ IE L ENV +
Sbjct: 601 IVSTKVYWSTIENLMLDENVPL 622
Score = 34.4 bits (78), Expect = 0.17
Identities = 12/102 (11%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 708 EFQTQKEAAWAISNLTISGNRDQVAKLV--QEGVIPPFCDLLS--CKDAQVIQVVLDGIN 763
+ ++Q+ A +N+ + +AK + ++ +I + + D ++ Q +L
Sbjct: 667 DVESQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724
Query: 764 NMLKMADAQVET-LANMIEECGGLDKI--EMLQNHENVEIYK 802
+ ++ + +++E L L+ ++ +
Sbjct: 725 GLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFS 766
>1qgr_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
Length = 27
Score = 47.7 bits (113), Expect = 1e-07
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNV 27
RRRR EV VELRK K+++ + KRRNV
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNV 26
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 53.3 bits (127), Expect = 3e-07
Identities = 63/454 (13%), Positives = 141/454 (31%), Gaps = 34/454 (7%)
Query: 89 ILPVLVECLER---SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 145
+LP ++ L+ ++ L IA G + +P ++ L +
Sbjct: 356 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLIQCLSDKKA 414
Query: 146 NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205
V W L ++ LL I L
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRV-QEAACSAFATLEEEA 473
Query: 206 DPP--PSMSTIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTV 262
P ++ I++ L+ A + + H + +Y + + + +++L+ +
Sbjct: 474 CTELVPYLAYILDTLVFAFS--KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531
Query: 263 WALSYLTDGGNDQIQMVID--SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQV 320
+ + + +++ S V +L V + V +
Sbjct: 532 IQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 591
Query: 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVG 380
+A P + A+ LS + G ++ ++ + ++ +
Sbjct: 592 PDQYEA----------PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK 641
Query: 381 RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440
P ++ + L ++ + +A +P+ L +VC A WA+G
Sbjct: 642 ----MPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGE 696
Query: 441 IIGD-GPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDP--PPSMST 496
I G +++ Y+ V+ L+ I P+ P + L N I L P +
Sbjct: 697 ISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ 754
Query: 497 IIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQ 529
I +L + + + + ++I NP
Sbjct: 755 FIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788
Score = 39.4 bits (91), Expect = 0.005
Identities = 66/507 (13%), Positives = 150/507 (29%), Gaps = 50/507 (9%)
Query: 34 DEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVL 93
D D +++ + + + + + +P+++ AV + + S + + + L
Sbjct: 164 DSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENL 220
Query: 94 VECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVW 153
L + P ++ AL + V L+ NV +A
Sbjct: 221 F-ALAGDEEPEVRKNVCRALVMLLE-VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACE 278
Query: 154 ALGNIIGDGPQLRDYVINMG--VVPPLLSFIK--PDIPISFLRNVTWVIVNLCRNKDPPP 209
+ + P +D ++ ++P L++ +K I +V D
Sbjct: 279 FWLTLA-EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337
Query: 210 SMSTII-----------ELLPALNILIHHHDTS-------VSIYLWLSIIEK-----NPQ 246
+ ELLP + L+ I + +I E P
Sbjct: 338 RKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY 397
Query: 247 ISKILVSKMKILVD--------TVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVK 298
+ +++ ++ L D T W LS Q ++ L+ + +
Sbjct: 398 LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKR 457
Query: 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI-TAGNQ 357
VQ A+ A + + L L + + K + + +
Sbjct: 458 VQEAACSAFATLEEEACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516
Query: 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 417
+ L+P +I + F L+++A+ Q P
Sbjct: 517 HLNKPEYIQMLMPPLIQKWNMLKD---EDKDLFPLLECLSSVATA----LQSGFLPYCEP 569
Query: 418 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 477
++ R + + + + + P ++ + ++ L + +I R+
Sbjct: 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN 629
Query: 478 TWVIVNLCRNKDPPPSMSTIIELLPAL 504
++ C P + LL L
Sbjct: 630 ILTLMYQCMQDKMPEVRQSSFALLGDL 656
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 49.2 bits (118), Expect = 3e-07
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 20/101 (19%)
Query: 65 AVQSARKLLSSDKNPPI-----EAL--IHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
+ ++ D+N + AL + L+E L ++ ++ AAW + N
Sbjct: 13 GLVPRGSHMA-DENKWVRRDVSTALSRMGDEAFEPLLESLS-NEDWRIRGAAAWIIGNFQ 70
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AV ++LL V A +L I
Sbjct: 71 D-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 48.4 bits (116), Expect = 6e-07
Identities = 20/162 (12%), Positives = 42/162 (25%), Gaps = 45/162 (27%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
S + ++ + V+ A+ + +A L++ +
Sbjct: 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM------------GDEAFEPLLESLSNEDWR 57
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
I A W + N ++ V+ +I L ++ AA +L
Sbjct: 58 IRGAAAWIIGNF--QDERAVEPLIKL-----------------LEDDSGFVRSGAARSLE 98
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439
I +L + + AV L
Sbjct: 99 QIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129
Score = 43.1 bits (102), Expect = 4e-05
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 34/120 (28%)
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
L + + + + ++ LS + G++A + ++++ L
Sbjct: 12 SGLVPRGSHMADENKWVRRDVSTALSRM--GDEA-FEPLLES-----------------L 51
Query: 385 R---PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
++ AAW + N AV ++LL V A +L I
Sbjct: 52 SNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100
Score = 42.3 bits (100), Expect = 7e-05
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 12/67 (17%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+ L++ LE ++ AA +L I +L + +
Sbjct: 75 VEPLIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARK 122
Query: 150 QAVWALG 156
AV L
Sbjct: 123 VAVNYLE 129
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 52.1 bits (124), Expect = 7e-07
Identities = 66/454 (14%), Positives = 137/454 (30%), Gaps = 70/454 (15%)
Query: 89 ILPVLVECLE---RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 145
IL ++E +E +D + A A +I G + A+P L L+
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425
Query: 146 NVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204
V E W +G I + GVV L ++ ++ N +W I+NL
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQ 483
Query: 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264
++ LI + ++ A
Sbjct: 484 LAEATPSPIYNFYPALVDGLIGAANRI--------------------DNEFNARASAFSA 523
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
L+ + + D + S + ++ L ++ N +T D Q+ L
Sbjct: 524 LTTMVEYATDTVAETSAS-ISTFVMDKLGQ--------TMSVDENQLTLEDAQSLQELQS 574
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
+ L+ A++ + + ++ ++
Sbjct: 575 NILTVLAAVIRKSPSSV------------------------EPVADMLMGLFFRLLEKKD 610
Query: 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII-G 443
++ + +A++ +A+ ++ + P L+ L S V AV + +I
Sbjct: 611 SAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 444 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT-WVIVNLCRN--KDPPPSMSTIIEL 500
R Y ++ L I L+ V ++ N D P ++ I+ L
Sbjct: 670 LEEDFRRYSDA--MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727
Query: 501 L-PALNILIHHHDTSVSIY---LWLSIIEKNPQI 530
A N + Y + ++++ I
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGI 761
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 47.0 bits (110), Expect = 3e-05
Identities = 93/703 (13%), Positives = 203/703 (28%), Gaps = 62/703 (8%)
Query: 18 EETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSS-- 75
++T + + D+ ++ + + +V+A K E + Q +L+
Sbjct: 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV 462
Query: 76 DKNPPIEALIHSGILPVLVECL-ERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134
+ P ++P ++ L ++S NL+ +A L I S Q VP
Sbjct: 463 NVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 522
Query: 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194
+ + P + +A+ ++ V+ PL D
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVK-------------VIRPLDQPSSFDATPYIKDLF 569
Query: 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254
T I L I + + + + S +E+ L
Sbjct: 570 TCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT-- 627
Query: 255 MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314
TV AL+ + + VP L L + ++ +L A+ ++
Sbjct: 628 ------TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681
Query: 315 DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 374
+ + L P L++ + + A+ FL+ + + + + + +L ++I
Sbjct: 682 SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGS-ILNELI- 739
Query: 375 NLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN----- 429
+V P LQ A A+ + + LR+L P +
Sbjct: 740 ------GLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY---MDLLRMLTGPVYSQSTAL 790
Query: 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489
+Q+ +++ + + V + S + + + D
Sbjct: 791 THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID 850
Query: 490 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCS--RYLYY 547
+ +L A + ++ S L + P+ ++ ++ +YL
Sbjct: 851 LSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLL 910
Query: 548 LSHNSGPMSCQKKQHSIY--------MCVSPGTDEQT-QVILNC----------DALSHF 588
S S Y + +E T V+ C L
Sbjct: 911 HSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRL 970
Query: 589 PALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDN 648
L V + + + + ++ + + L+ + L
Sbjct: 971 KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN-CIGDFLKTLEDPDLNVRRVALVT 1029
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFT 691
N HN + L V + + + +R G F
Sbjct: 1030 FNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFK 1072
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 44.9 bits (105), Expect = 1e-04
Identities = 61/460 (13%), Positives = 140/460 (30%), Gaps = 53/460 (11%)
Query: 84 LIHSGILPVLVECLE---RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 140
I+P ++ ++ ++ + A A I G + + A+P + L+
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417
Query: 141 MSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199
P V + A W +G I + V ++ L+ + + ++ NV W
Sbjct: 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVA--SNVCWAFS 475
Query: 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
+L ++ E PA L + V L + + + + S + L+
Sbjct: 476 SLAEAAYEAADVADDQE-EPATYCLSSSFELIVQK-LLETTDRPDGHQNNLRSSAYESLM 533
Query: 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQ 319
+ V + D V ++ L L+ +I + +D
Sbjct: 534 EIV------KNSAKDCYPAVQK--TTLVIMERLQQ--------VLQMESHIQSTSDRIQF 577
Query: 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379
L + +L + + + + + + L+
Sbjct: 578 NDLQSLLCATLQNVLRKVQHQDALQISDVV----------------------MASLLRMF 615
Query: 380 GRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439
+Q +A A++ + + + + A L + L VC AV +G
Sbjct: 616 QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVG 675
Query: 440 NI-IGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRN--KDPPPSMS 495
++ + + V+ LL + ++ S + V ++ + +
Sbjct: 676 DLCRALQSNIIPFCDE--VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE 733
Query: 496 TIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 534
++ L A + D + YL + I+
Sbjct: 734 VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIV 773
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 39.7 bits (92), Expect = 0.004
Identities = 52/382 (13%), Positives = 119/382 (31%), Gaps = 48/382 (12%)
Query: 113 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172
L + G SA Q A L R+ S + AV AL ++ + R V
Sbjct: 4 LRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSL---SKKYRLEVGIQ 60
Query: 173 GVVPPLLSFIKPDIP-ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231
+ L+ ++ D + + N+ N + + ++ +
Sbjct: 61 AM-EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTR--QSEDLGSQFTE-- 115
Query: 232 VSIYLWLSIIEKNPQISKILVS-----KMKILVDTVWALSYLTDGGNDQIQMVIDS--GV 284
I K + +L+S + V L+ L Q+Q +I
Sbjct: 116 --------IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMG 167
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK---- 340
V L+ LL+ ++ + + + +++ +A F LL E+
Sbjct: 168 VSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENA---FERLLDIITEEGNSD 224
Query: 341 ---ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL- 396
+ ++ + L N+ N + + + ++ + + +
Sbjct: 225 GGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284
Query: 397 ---------TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS--NVCEQAVWALGNIIGDG 445
N TS+ + + G + +LM+ ++ + + + +I
Sbjct: 285 QLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGC 344
Query: 446 PQLRDYVINMGV--VPPLLSFI 465
+DY ++ PP + +
Sbjct: 345 QVNQDYFASVNAPSNPPRPAIV 366
Score = 30.1 bits (67), Expect = 3.6
Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 112 ALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS--NVCEQAVWALGNIIGDGPQLRDYV 169
+ N TS+ + + G + +LM+ ++ + + + +I +DY
Sbjct: 292 SPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYF 351
Query: 170 INMGV--VPPLLSFI 182
++ PP + +
Sbjct: 352 ASVNAPSNPPRPAIV 366
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 39.8 bits (92), Expect = 0.004
Identities = 37/264 (14%), Positives = 72/264 (27%), Gaps = 53/264 (20%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT--DEQTQVILNCDALSHFPALLTHPK 338
+ V +L +L + A+ +G + GT E +
Sbjct: 470 NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY--------SQETQH 521
Query: 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398
I + L+ I G Q +I L L++ A+ +
Sbjct: 522 GNITRGLAVGLALINYGRQELADDLITKMLASDE-------------SLLRYGGAFTIAL 568
Query: 399 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 458
+GT + L + + +V AV ALG ++ V
Sbjct: 569 AYAGTGNNSA------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT---------V 613
Query: 459 PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518
P ++ + + + C K + L+ L V
Sbjct: 614 PRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQA 666
Query: 519 LWLSI--------IEKNPQISKIL 534
+++ + NPQ++ I
Sbjct: 667 AMIALSMILIQQTEKLNPQVADIN 690
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 36.7 bits (84), Expect = 0.032
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 81 IEALIHSGILPVLVECLE---RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137
+ I+P ++ ++ ++ + A A I G + + A+P +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414
Query: 138 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 182
L+ P V + A W +G I P+ IN + PLL +
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCL 456
Score = 32.5 bits (73), Expect = 0.64
Identities = 58/382 (15%), Positives = 116/382 (30%), Gaps = 59/382 (15%)
Query: 89 ILPVLVECLERSDRPNLQFEAAW-ALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN- 146
++P LV + + E+ A+ I + + + + ++ + +
Sbjct: 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN 188
Query: 147 -VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205
V A AL N L F K + R+ I+ +
Sbjct: 189 NVKLAATNALLN--------------------SLEFTKANFDKESERHF---IMQVVCEA 225
Query: 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVW-- 263
P + L L ++ + + Y+ P + I + MK +D V
Sbjct: 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYM-------GPALFAITIEAMKSDIDEVALQ 278
Query: 264 ALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323
+ + ++ ++++ + I++ E Q Q V +
Sbjct: 279 GIEFWSNVCDEEMDLAIEAS------------EAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 324 CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIV 383
L+ CK A L + + + +LP I +++
Sbjct: 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH----VLPFIKEHIKNP---- 378
Query: 384 LRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443
+ A A I G + + A+P + L+ P V + A W +G I
Sbjct: 379 -DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437
Query: 444 DGPQLRDYVINMGVVPPLLSFI 465
P+ IN + PLL +
Sbjct: 438 LLPEA---AINDVYLAPLLQCL 456
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 35.7 bits (82), Expect = 0.080
Identities = 65/504 (12%), Positives = 150/504 (29%), Gaps = 68/504 (13%)
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115
N EL L + + L+S +NP L I V + + +
Sbjct: 103 NSNSELIRLINNAIKNDLAS-RNPTFMGLALHCIANVGSREMAEAFAGEIP--------- 152
Query: 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA--LGNIIGDGPQLRDYVINMG 173
+ T + V A LRL + ++ W + +++ D + +
Sbjct: 153 -KILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLND----QHLGVVTA 206
Query: 174 VVPPLLSFIK--PDIPISFLRNVTWVIVNLCRNKDPPPSMSTI---------IELLPALN 222
+ + + P+ + + + + + T ++LL L
Sbjct: 207 ATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ 266
Query: 223 ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID- 281
D +V L + + + SK + A+ + +
Sbjct: 267 CYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL 326
Query: 282 -SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
L L H+E ++ +L ++ + + V + + + + L T
Sbjct: 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINA--LKTERDVS 384
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400
+ + AV L + + AQ ++ ++++ L+ +++ E + +A
Sbjct: 385 VRQRAVDLLYAMCDRSNAQQ-------IVAEMLSYLETA-----DYSIREEIVLKVAILA 432
Query: 401 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 460
V V L L+ V E+ + + I+ + ++ Y
Sbjct: 433 E-----KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTV---- 483
Query: 461 LLSFIKPDIPISFLRNVTWVI---VNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI 517
+ P + ++ +++ NL S+ + L+ H
Sbjct: 484 FEALQAPACHENLVKVGGYILGEFGNLIAGDPR----SSPLIQFNLLHSKFHLCSVPTRA 539
Query: 518 YLWLSII-------EKNPQISKIL 534
L + I E I +L
Sbjct: 540 LLLSTYIKFVNLFPEVKATIQDVL 563
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 35.5 bits (82), Expect = 0.085
Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 27/220 (12%)
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEAL-------IHS-GILPVLVECLER---SDRPN 104
K P++ ++AV S K D NP I AL I I L E L + + P
Sbjct: 78 KSQPDMAIMAVNSFVKDC-EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPY 136
Query: 105 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ 164
++ AA + + Q V G + L+ + V AV AL I P
Sbjct: 137 VRKTAAVCVAKLH---DINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193
Query: 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNIL 224
+N + LL+ + + + I++ P + +
Sbjct: 194 SNLLDLNPQNINKLLTALN--ECTEWGQI---FILDCLS-NYNPKDDREAQSICERVTPR 247
Query: 225 IHHHDTSV------SIYLWLSIIEKNPQISKILVSKMKIL 258
+ H +++V + +L ++ K+ +L+ K+
Sbjct: 248 LSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPP 287
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 34.1 bits (78), Expect = 0.23
Identities = 64/497 (12%), Positives = 153/497 (30%), Gaps = 95/497 (19%)
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEAL-------IHS-GILPVLVECLER---SDRPN 104
+ ++ LL + L+ ++ L + S + L +E+ +
Sbjct: 99 DERQDVHLLMTNCIKNDLNH-STQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSY 157
Query: 105 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ 164
L+ +AA ++ + + +P LL + V +V L + P
Sbjct: 158 LRKKAALCAVHVI-----RKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212
Query: 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVT-------WVIVNLCR--NKDPPPSMSTII 215
+ + + VP L+ +K I + ++ V + R +
Sbjct: 213 MLAHFRKL--VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE 270
Query: 216 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ 275
+ L + + +TS ++ + + + D ++
Sbjct: 271 AMNDILAQVATNTETSKNVGNAILYE----------------------TVLTIMDIKSES 308
Query: 276 IQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT----DEQTQVILNCDALSHFP 331
V+ + L L + + ++ +L ++ V I++C
Sbjct: 309 GLRVL---AINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDC------- 358
Query: 332 ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFE 391
L I + A+ + GN + ++ +++ L P + +
Sbjct: 359 --LKDLDVSIKRRAMELSFALVNGNNIRG-------MMKELLYFLDSC-----EPEFKAD 404
Query: 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451
A + A + + +R+L + S V + AV L +I + ++ Y
Sbjct: 405 CASGIFLAA-----EKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY 459
Query: 452 VINMGVVPPLLSFIKPD-IPISFLRNVTWVI------VNLCRNKDPPPSMSTIIELLPAL 504
V L I D ++ W I + + ++ P T E+L L
Sbjct: 460 -----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDIL 514
Query: 505 NILIHHHDTSVSIYLWL 521
++ + ++ +
Sbjct: 515 ESVLISNMSTSVTRGYA 531
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase,
protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Length = 695
Score = 33.3 bits (77), Expect = 0.40
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 544 YLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALS 586
+Y K+ +I G Q +V+L+ + S
Sbjct: 81 RFFY-VRTHKD-----KEKAIL-YWRQGESGQEKVLLDPNGWS 116
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 32.5 bits (73), Expect = 0.47
Identities = 29/193 (15%), Positives = 66/193 (34%), Gaps = 12/193 (6%)
Query: 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQF 107
L++E A +D+ +L A + ++L + + ++ L V + L + + +
Sbjct: 36 FLILELAGEDDETTRLRAFVALGEILK-RADSDLRMMVLERHLDVFINALSQEN-EKVTI 93
Query: 108 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG--NIIGDGPQL 165
+A AL + ++ + A + LL SP + + + L + D +
Sbjct: 94 KALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV 151
Query: 166 RDYVINMGVVPPL------LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLP 219
R Y+ + V P L + S +I++ + + + L
Sbjct: 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALD 211
Query: 220 ALNILIHHHDTSV 232
L +
Sbjct: 212 VLEKALSFPLLEN 224
Score = 32.1 bits (72), Expect = 0.60
Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 6/186 (3%)
Query: 261 TVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQV 320
AL + + ++M++ + I LS + KV +LRA+G +V ++
Sbjct: 53 AFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112
Query: 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVG 380
L A +LL P + + E + LS + +++ L+ + G
Sbjct: 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAG 170
Query: 381 RIVLR----PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVW 436
+ + + + E + A+ + + L P + +
Sbjct: 171 FCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL 230
Query: 437 ALGNII 442
+ I+
Sbjct: 231 KISRIV 236
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 31.3 bits (71), Expect = 0.94
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 8 VTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQ 67
+ +E+R+ ++ + RNV D+TD D E++ LV+ A + + A++
Sbjct: 67 LGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM--PHHQGNQTALE 124
Query: 68 SARKL 72
++
Sbjct: 125 QLQRR 129
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 31.0 bits (70), Expect = 1.5
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 15/134 (11%)
Query: 29 LADSTDEDDIEKMAQVNLDMLV-VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS 87
+AD + +E+MA + D LV ++ P D++ + L+
Sbjct: 118 VADRLPLEQLEQMAA-DRDYLVRAYVVQRIPPGR--------LFRFMRDEDRQVRKLVAK 168
Query: 88 GILPVLVECLERSDRPNLQFEAAWALTN-----IASGTSAQTQEVVAAGAVPLFLRLLMS 142
+ + + + P ++ A L + + A LR L
Sbjct: 169 RLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDE 228
Query: 143 PHSNVCEQAVWALG 156
P V LG
Sbjct: 229 PDPEVRLAIAGRLG 242
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 30.6 bits (70), Expect = 2.3
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 546 YYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALS 586
Y+ +N+G Q+ + V + + +V L+ + LS
Sbjct: 86 YFYFYNTG------LQNQRVLYVQDSLEGEARVFLDPNILS 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 60 ELQLLA-VQSARKLLSSDKNPPIEAL-IHSGI 89
E Q L +Q++ KL + D P AL I + +
Sbjct: 18 EKQALKKLQASLKLYADDSAP---ALAIKATM 46
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 30.3 bits (68), Expect = 2.8
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 259 VDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315
D + L G QI V D+G+ H+ + + +L A+G D
Sbjct: 10 ADVAQSSYGLY--GQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNAND 64
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 29.7 bits (66), Expect = 3.9
Identities = 28/267 (10%), Positives = 82/267 (30%), Gaps = 43/267 (16%)
Query: 106 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165
A+ + T + + + + ++ +V A+ + +++ +
Sbjct: 118 DSYRGPAVRALCQITDSTMLQAI----ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV 173
Query: 166 RDYVI----------NMGVVP---PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212
+ N+ V LL ++ + ++ + ++ + ++
Sbjct: 174 VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSP------F 227
Query: 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK-MKILVDTVWALSYLTDG 271
++ + + D S L+ I L +K ++ + A+ L
Sbjct: 228 AYCMMIRVASRQLEDEDGSRDSPLF-------DFIESCLRNKHEMVVYEAASAIVNLPGC 280
Query: 272 GNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFP 331
++ + V L S + ++ A++R + + + + C
Sbjct: 281 SAKEL-----APAVSVLQLFCSSPKAALRYAAVRTLNKVA---MKHPSAVTAC--NLDLE 330
Query: 332 ALLTHPKEKICKEAVWFLSNITAGNQA 358
L+T I A+ L G++
Sbjct: 331 NLVTDANRSIATLAITTLLKT--GSEG 355
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 29.6 bits (66), Expect = 5.9
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
E++ A + K + N IE I P L++C+ P E L
Sbjct: 189 KEVKAAATAAMTKATETVDNKDIERFI-----PSLIQCIA---DPTEVPETVHLL----G 236
Query: 119 GTS--AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
T+ A+ + VPL R L + + ++ + N+
Sbjct: 237 ATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNM 278
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 28.9 bits (64), Expect = 6.1
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVT--GTDEQTQVILNCDALSHFPALLTHPKEKI 341
V +IP K K+ A+ V ++ G + L H P L H +
Sbjct: 140 SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNV 199
Query: 342 CKEAVWFLSNI---TAGNQAQVQAVIDAGLLPKIIANLQK 378
+ + + I T N ++ ++ L P + +L K
Sbjct: 200 RSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHK 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 28.9 bits (65), Expect = 7.8
Identities = 7/73 (9%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 751 DAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIER 810
V+ L +L+ + T N +++ E + +I+
Sbjct: 34 YQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEE--NVVGKLQEILCD 91
Query: 811 YFSEVEDEDNLGP 823
+
Sbjct: 92 MLPSADKWQEPIH 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0509 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,946,626
Number of extensions: 800161
Number of successful extensions: 2672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1758
Number of HSP's successfully gapped: 227
Length of query: 845
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 743
Effective length of database: 3,853,851
Effective search space: 2863411293
Effective search space used: 2863411293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)