BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12607
         (175 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OHD|A Chain A, Crystal Structure Of Hypothetical Molybdenum Cofactor
          Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|B Chain B, Crystal Structure Of Hypothetical Molybdenum Cofactor
          Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|C Chain C, Crystal Structure Of Hypothetical Molybdenum Cofactor
          Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|D Chain D, Crystal Structure Of Hypothetical Molybdenum Cofactor
          Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|E Chain E, Crystal Structure Of Hypothetical Molybdenum Cofactor
          Biosynthesis Protein C From Sulfolobus Tokodaii
 pdb|2OHD|F Chain F, Crystal Structure Of Hypothetical Molybdenum Cofactor
          Biosynthesis Protein C From Sulfolobus Tokodaii
          Length = 151

 Score = 30.0 bits (66), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 21 NEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFL----DFITYSYMIDNIILLITG 76
           E   + +S  D  LRE +V  +I +R   +E +        D IT +           G
Sbjct: 2  TEAKIVDISSKDIVLREAVVEGYIKLRKETIEKIKNKEVEKGDVITVAKT--------AG 53

Query: 77 TLHQRPISELIPKCHPL 93
           L  +   ELIP CHP+
Sbjct: 54 ILAAKKTPELIPMCHPI 70


>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
           Fad In Glucooligosaccharide Oxidase From Acremonium
           Strictum
          Length = 503

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 85  ELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLD 135
           E   K +  G+ E+++AI     P +++  V+   P+A      ISE+DL+
Sbjct: 443 EEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQKLISEEDLN 493


>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
           Glucooligosaccharide Oxidase Reveals A Novel
           Flavinylation
 pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
           Acremonium Strictum: A Novel Flavinylation Of
           6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
          Length = 503

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 85  ELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLD 135
           E   K +  G+ E+++AI     P +++  V+   P+A      ISE+DL+
Sbjct: 443 EEAQKLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIAYLEQKLISEEDLN 493


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,063,948
Number of Sequences: 62578
Number of extensions: 192740
Number of successful extensions: 377
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 6
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)