Query psy12607
Match_columns 175
No_of_seqs 109 out of 207
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:37:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9m_A V-type ATP synthase sub 100.0 2.5E-30 8.5E-35 220.1 12.1 159 3-174 33-193 (323)
2 1v9m_A V-type ATP synthase sub 98.1 9.5E-06 3.2E-10 68.3 8.6 130 4-151 134-270 (323)
3 3uv5_A Transcription initiatio 43.9 54 0.0018 26.6 6.4 134 13-158 45-199 (265)
4 1ekr_A Molybdenum cofactor bio 42.0 6.1 0.00021 31.0 0.3 22 74-95 60-81 (161)
5 2ohd_A Probable molybdenum cof 36.3 6.5 0.00022 30.6 -0.4 20 75-94 52-71 (151)
6 2iih_A Molybdenum cofactor bio 35.7 6.7 0.00023 30.6 -0.4 22 74-95 58-79 (157)
7 2eey_A Molybdopterin biosynthe 35.6 6.7 0.00023 30.8 -0.4 22 74-95 60-81 (162)
8 1wwp_A Hypothetical protein TT 31.5 39 0.0013 24.1 3.3 32 129-161 86-117 (119)
9 2ekn_A Probable molybdenum cof 30.6 8.7 0.0003 30.1 -0.5 20 75-94 61-80 (159)
10 3bts_E Regulatory protein GAL4 30.1 28 0.00097 19.1 1.7 20 104-123 4-23 (26)
11 3aad_A Transcription initiatio 28.1 2.4E+02 0.0082 23.1 8.0 44 116-159 182-233 (292)
12 3l9k_W Dynein intermediate cha 24.4 17 0.0006 21.8 0.2 31 3-38 3-33 (38)
13 3aq9_A Group 1 truncated hemog 23.5 1.1E+02 0.0036 21.4 4.4 22 106-127 19-40 (121)
14 1xrx_A SEQA protein; protein f 21.8 87 0.003 19.8 3.1 23 152-174 8-34 (50)
15 2ig3_A Group III truncated hae 20.2 88 0.003 22.7 3.4 22 108-129 15-36 (127)
No 1
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=99.97 E-value=2.5e-30 Score=220.09 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=139.7
Q ss_pred chhhhhhcCCCCchhhhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhcCCC
Q psy12607 3 NINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRP 82 (175)
Q Consensus 3 ~~dlk~~L~~TDYg~~L~~e~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~~~~ 82 (175)
-+|++.+|++|+||+++.+.+ +..|+.+|+.+++++|+.++++++++.++|+++++++|||+||+.+++|+.+|++
T Consensus 33 l~e~~~~L~~t~Y~~~l~~~~----~~~iE~~L~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~di~Nik~ilr~~~~~~~ 108 (323)
T 1v9m_A 33 FADFLRLLSETVYGGELAGQG----LPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRP 108 (323)
T ss_dssp HHHHHHHHHTSGGGGGCCCSS----HHHHHHHHHHHHHHHTTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCchHHHHhhcC----HHHHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 368999999999999998753 7899999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccCCCCchh--hhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHh
Q psy12607 83 ISELIPKCHPLGSFEQ--MEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKK 160 (175)
Q Consensus 83 ~~ell~~chPLG~F~~--l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yLE~fy~f~~~ 160 (175)
.+++. ||| |.|+. ++++..|+|++|++. +|.+|||++++..+... +.+.|++.+++.|+|+|+++++++|++
T Consensus 109 ~~~l~--~~~-g~~~~~~l~~l~~a~~~~el~~-~L~~t~y~~~l~~~~~~--~~~~~~~~~e~~Ldk~y~~~~~~~~~~ 182 (323)
T 1v9m_A 109 FEEVL--LLP-GTLREEVWRQAYEAQDPAGMAQ-VLAVPGHPLARALRAVL--RETQDLARVEALLAKRFFEDVAKAAKG 182 (323)
T ss_dssp GGGCC--CCS-CSSCHHHHHHHHHSSSHHHHHH-HHHTTTCHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHC----
T ss_pred ccccc--cCC-CCCCHHHHHHHHhCCCHHHHHH-HHhccccchHHHHHHHH--HHcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 99987 899 99995 999999999999995 69999999888877654 556699999999999999999999999
Q ss_pred cCCchHHHHHHhhc
Q psy12607 161 LGGTTADTMCEILS 174 (175)
Q Consensus 161 lgg~t~~vM~~iL~ 174 (175)
+|| ++|++++.
T Consensus 183 ~~~---~~l~~~~~ 193 (323)
T 1v9m_A 183 LDQ---PALRDYLA 193 (323)
T ss_dssp ------CHHHHHHH
T ss_pred cCh---HHHHHHHH
Confidence 887 67887763
No 2
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=98.10 E-value=9.5e-06 Score=68.35 Aligned_cols=130 Identities=8% Similarity=0.037 Sum_probs=94.4
Q ss_pred hhhhhhcCCCCchhhhhCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHHHhc
Q psy12607 4 INLKLHLQGTDYGSFLANE----PSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLH 79 (175)
Q Consensus 4 ~dlk~~L~~TDYg~~L~~e----~~~~~~~~I~~~l~~kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g~~~ 79 (175)
+++.-.|++|.||.+++.- .. .+...++-+|++..-+.+....+...+ ..+-+|+..+-++.|+..+++++..
T Consensus 134 ~el~~~L~~t~y~~~l~~~~~~~~~-~~~~~~e~~Ldk~y~~~~~~~~~~~~~--~~l~~~~~~~iD~~Ni~~~lr~~~~ 210 (323)
T 1v9m_A 134 AGMAQVLAVPGHPLARALRAVLRET-QDLARVEALLAKRFFEDVAKAAKGLDQ--PALRDYLALEVDAENLRTAFKLQGS 210 (323)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhccccchHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677789999888776551 12 278889999998887777544433333 5677778889999999999999999
Q ss_pred CCCchhhhhhccCCCC-ch--hhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccccccccHHHHHHHHHHHHH
Q psy12607 80 QRPISELIPKCHPLGS-FE--QMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYL 151 (175)
Q Consensus 80 ~~~~~ell~~chPLG~-F~--~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~l~e~nieiir~~L~K~yL 151 (175)
|.+ +...++|-|. ++ .+.+++.+.+ ++... |.+|||+++|... ++..++..+++..+
T Consensus 211 ~~~---i~~~li~~G~~l~~~~l~~l~~~~~--~~~~~-l~~t~Y~~~~~~~---------~~~~~E~~~~~~~~ 270 (323)
T 1v9m_A 211 GLA---PDAFFLKGGRFVDRVRFARLMEGDY--AVLDE-LSGTPFSGLSGVR---------DLKALERGLRCVLL 270 (323)
T ss_dssp CCC---GGGTCCSSCSSCCHHHHHHHHTTCG--GGGGS-CTTSTTGGGTTCC---------SHHHHHHHHHHHHH
T ss_pred CCC---HHHhccCCCCccCHHHHHHHHhCcH--HHHHH-HcCCCHHHHhccC---------CHHHHHHHHHHHHH
Confidence 986 6667789997 76 7899998888 77744 8999999988664 44455555554443
No 3
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=43.94 E-value=54 Score=26.64 Aligned_cols=134 Identities=13% Similarity=0.217 Sum_probs=68.5
Q ss_pred CCchhhhhCCCCCCCHHHHHHHHHH-------HHHHHHHHHHhcCccchHHHHHHHhhhhhHHHHHHHHHH----HhcCC
Q psy12607 13 TDYGSFLANEPSPLAVSVIDDKLRE-------KLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITG----TLHQR 81 (175)
Q Consensus 13 TDYg~~L~~e~~~~~~~~I~~~l~~-------kL~~ef~~lr~~a~~~l~~fld~~~~~~mIdNv~~Li~g----~~~~~ 81 (175)
+||...+. .|++.++|++++.. .++.+++.|..++-. |-..+..|-.....+.. .+...
T Consensus 45 pdY~~iI~---~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~-------yN~~~s~i~~~A~~l~~~~~~~~~~~ 114 (265)
T 3uv5_A 45 KDYYKIIT---RPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT-------YNGPKHSLTQISQSMLDLCDEKLKEK 114 (265)
T ss_dssp TTHHHHCS---SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHhC---CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhh-------cCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 56777764 46899999999986 466666666665420 00111111111111111 11110
Q ss_pred --CchhhhhhccCCCCchhhhHhhhcCCHHHHHHHHhhcCCCchHhhhhccccc-------ccc-ccHHHHHHHHHHHHH
Q psy12607 82 --PISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQD-------LDE-MNIEIIRNTLYKAYL 151 (175)
Q Consensus 82 --~~~ell~~chPLG~F~~l~al~~a~~~~el~~~vL~dTpl~~yf~~~l~~~~-------l~e-~nieiir~~L~K~yL 151 (175)
...+..+.++|+..-+...++.. -..++...-+..-|.+.+|..-.+... .+. +++..|+..|.+..|
T Consensus 115 ~~~~~~~ek~i~p~~dd~~~~~~~~--il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y 192 (265)
T 3uv5_A 115 EDKLARLEKAINPLLDDDDQVAFSF--ILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKY 192 (265)
T ss_dssp HHHHHHHHHHHSTTTTCHHHHHHHH--HHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCC
T ss_pred hhhhhhhhhhhhhccccchhhHHHH--HHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCC
Confidence 12233444566653332211111 123333333556677777776655433 334 899999999988665
Q ss_pred HHHHHHH
Q psy12607 152 EAFYDFC 158 (175)
Q Consensus 152 E~fy~f~ 158 (175)
..+-.|+
T Consensus 193 ~~~~~f~ 199 (265)
T 3uv5_A 193 QSRESFL 199 (265)
T ss_dssp SSHHHHH
T ss_pred CCHHHHH
Confidence 5554443
No 4
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=42.05 E-value=6.1 Score=30.98 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=16.0
Q ss_pred HHHHhcCCCchhhhhhccCCCC
Q psy12607 74 ITGTLHQRPISELIPKCHPLGS 95 (175)
Q Consensus 74 i~g~~~~~~~~ell~~chPLG~ 95 (175)
|.|...=....+|+++||||..
T Consensus 60 iAgImaAK~T~~LIPlCHpl~l 81 (161)
T 1ekr_A 60 IAGIQAAKRTWDLIPLCHPLML 81 (161)
T ss_dssp HHHHHHHHTHHHHSTTCCCCCC
T ss_pred HHHHHHHHhhhhhCcccCcCcc
Confidence 4444444567899999999983
No 5
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=36.27 E-value=6.5 Score=30.56 Aligned_cols=20 Identities=45% Similarity=0.926 Sum_probs=14.2
Q ss_pred HHHhcCCCchhhhhhccCCC
Q psy12607 75 TGTLHQRPISELIPKCHPLG 94 (175)
Q Consensus 75 ~g~~~~~~~~ell~~chPLG 94 (175)
.|...=....||+++||||.
T Consensus 52 AgImaaK~T~~LIPlCHpl~ 71 (151)
T 2ohd_A 52 AGILAAKKTPELIPMCHPIP 71 (151)
T ss_dssp HHHHHHHHHHHHSTTCCCCC
T ss_pred HHHHHhhhHhhhCcccCcCc
Confidence 34443345679999999987
No 6
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=35.67 E-value=6.7 Score=30.64 Aligned_cols=22 Identities=41% Similarity=0.857 Sum_probs=15.1
Q ss_pred HHHHhcCCCchhhhhhccCCCC
Q psy12607 74 ITGTLHQRPISELIPKCHPLGS 95 (175)
Q Consensus 74 i~g~~~~~~~~ell~~chPLG~ 95 (175)
|.|...=....+|++.||||..
T Consensus 58 iAgImaAK~T~~LIPlCHpl~l 79 (157)
T 2iih_A 58 LAGILAAKKTADLIPLCHPLPL 79 (157)
T ss_dssp HHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHhhCcccCcccc
Confidence 3344444456799999999873
No 7
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis, structural genomics; 1.94A {Geobacillus kaustophilus}
Probab=35.65 E-value=6.7 Score=30.78 Aligned_cols=22 Identities=36% Similarity=0.834 Sum_probs=15.3
Q ss_pred HHHHhcCCCchhhhhhccCCCC
Q psy12607 74 ITGTLHQRPISELIPKCHPLGS 95 (175)
Q Consensus 74 i~g~~~~~~~~ell~~chPLG~ 95 (175)
|.|...=....+|++.||||..
T Consensus 60 iAgImaAK~T~~LIPlCHpl~l 81 (162)
T 2eey_A 60 VAGVMAAKKTADLIPMCHPLML 81 (162)
T ss_dssp HHHHHHHHHHHHHSTTCCCCCC
T ss_pred HHHHHHHHHHHhhCcccCcccc
Confidence 3444444456799999999873
No 8
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=31.49 E-value=39 Score=24.08 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=27.4
Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHhc
Q psy12607 129 ISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKL 161 (175)
Q Consensus 129 l~~~~l~e~nieiir~~L~K~yLE~fy~f~~~l 161 (175)
+...++++.+.+.+-+.+.+ |+.+|.+|++.+
T Consensus 86 ~~vH~Y~~~~~~~v~~~i~~-~l~~~~~l~~~i 117 (119)
T 1wwp_A 86 LTVHTYNEPLARAIFRRLPD-YARLMEQVLGRL 117 (119)
T ss_dssp HGGGTTSHHHHHHHHHHHHH-HHHHHHHHHHHT
T ss_pred HhcccccHhhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34556999999999999988 999999998875
No 9
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural genomic NPPSFA, national project on protein structural and function analyses; HET: FLC; 2.05A {Pyrococcus horikoshii}
Probab=30.62 E-value=8.7 Score=30.06 Aligned_cols=20 Identities=45% Similarity=0.888 Sum_probs=14.3
Q ss_pred HHHhcCCCchhhhhhccCCC
Q psy12607 75 TGTLHQRPISELIPKCHPLG 94 (175)
Q Consensus 75 ~g~~~~~~~~ell~~chPLG 94 (175)
.|...=....||+++||||.
T Consensus 61 AgImaaK~T~~LIPlCHpl~ 80 (159)
T 2ekn_A 61 AGILAVKRTPELIPLCHPIP 80 (159)
T ss_dssp HHHHHHHHHHHHSTTCCCCC
T ss_pred HHHHHhhhHHhhCcccCccc
Confidence 34443345679999999987
No 10
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=30.07 E-value=28 Score=19.07 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.5
Q ss_pred hcCCHHHHHHHHhhcCCCch
Q psy12607 104 VAATPAELYNAVLVDTPLAP 123 (175)
Q Consensus 104 ~a~~~~el~~~vL~dTpl~~ 123 (175)
-.++|.|+|+.+..|-..+|
T Consensus 4 NTTTMDDvyNylFdd~d~~p 23 (26)
T 3bts_E 4 NTTTMDDVYNYLFDDEDTXX 23 (26)
T ss_pred ccccHHHHHHHhcCcccccc
Confidence 46799999999877766555
No 11
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=28.14 E-value=2.4e+02 Score=23.12 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=29.4
Q ss_pred hhcCCCchHhhhhccccc-------ccc-ccHHHHHHHHHHHHHHHHHHHHH
Q psy12607 116 LVDTPLAPFFVDCISEQD-------LDE-MNIEIIRNTLYKAYLEAFYDFCK 159 (175)
Q Consensus 116 L~dTpl~~yf~~~l~~~~-------l~e-~nieiir~~L~K~yLE~fy~f~~ 159 (175)
|-.-|.+.+|..-.+..+ .+. +++..|+..|.+.+|..+-.|+.
T Consensus 182 l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~ 233 (292)
T 3aad_A 182 MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLD 233 (292)
T ss_dssp GGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHH
T ss_pred hhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHH
Confidence 455677777776554332 344 89999999998876655555543
No 12
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=24.36 E-value=17 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.6
Q ss_pred chhhhhhcCCCCchhhhhCCCCCCCHHHHHHHHHHH
Q psy12607 3 NINLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREK 38 (175)
Q Consensus 3 ~~dlk~~L~~TDYg~~L~~e~~~~~~~~I~~~l~~k 38 (175)
.++....+.+.|+..|+.. +...|++||.+.
T Consensus 3 eEEk~~I~~S~~F~~F~~r-----sskviERAL~e~ 33 (38)
T 3l9k_W 3 EEQKQMIILSENFQRFVVR-----AGRVIERALSEN 33 (38)
T ss_dssp HHHHHHHHTSHHHHHHHHH-----HHHHHHHHHHHS
T ss_pred HHHHHHHhcCHHHHHHHHH-----HHHHHHHHHccc
Confidence 4566667788899999965 678899998753
No 13
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=23.49 E-value=1.1e+02 Score=21.38 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=16.9
Q ss_pred CCHHHHHHHHhhcCCCchHhhh
Q psy12607 106 ATPAELYNAVLVDTPLAPFFVD 127 (175)
Q Consensus 106 ~~~~el~~~vL~dTpl~~yf~~ 127 (175)
.=++..|..|..|--++++|.+
T Consensus 19 ~lv~~FY~~v~~dp~l~~~F~~ 40 (121)
T 3aq9_A 19 AAVPLFYKKVLADERVKHFFKN 40 (121)
T ss_dssp HHHHHHHHHHTTCTTTGGGGTT
T ss_pred HHHHHHHHHHHcCHHHHHhhCC
Confidence 3467788888888888888754
No 14
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=21.81 E-value=87 Score=19.76 Aligned_cols=23 Identities=17% Similarity=0.583 Sum_probs=17.8
Q ss_pred HHHHHHHHh----cCCchHHHHHHhhc
Q psy12607 152 EAFYDFCKK----LGGTTADTMCEILS 174 (175)
Q Consensus 152 E~fy~f~~~----lgg~t~~vM~~iL~ 174 (175)
|++|+|..+ +|..-.++.+.+|+
T Consensus 8 delY~YIas~t~~igEsaSdiLRRll~ 34 (50)
T 1xrx_A 8 DELYSYIASHTKHIGESASDILRRMLK 34 (50)
T ss_dssp HHHHHHHHTTCSSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHhchhhccCHHHHHHHHHc
Confidence 578888765 78888888888874
No 15
>2ig3_A Group III truncated haemoglobin; truncated hemoglobin, 2-ON-2 globin, oxygen storage-transpor; HET: HEM; 2.15A {Campylobacter jejuni}
Probab=20.20 E-value=88 Score=22.66 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCCCchHhhhhc
Q psy12607 108 PAELYNAVLVDTPLAPFFVDCI 129 (175)
Q Consensus 108 ~~el~~~vL~dTpl~~yf~~~l 129 (175)
|+.-|..|..|--++|+|....
T Consensus 15 V~~FY~~v~~Dp~l~p~F~~~~ 36 (127)
T 2ig3_A 15 MEIFYEKVRKDKDLGPIFNNAI 36 (127)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHhChhHHHHHhccc
Confidence 5667888889988999987653
Done!