RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12607
(175 letters)
>gnl|CDD|216834 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit. This
family includes the AC39 subunit from vacuolar ATP
synthase, and the C subunit from archaebacterial ATP
synthase. The family also includes subunit C from the
Sodium transporting ATP synthase from Enterococcus
hirae.
Length = 335
Score = 194 bits (494), Expect = 6e-62
Identities = 67/170 (39%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
L+L L+ DYG LA S +VS+I+ L L + +R A L +D +
Sbjct: 30 ILRLLLE-DDYGDELAELGSKFSVSLIEKALNRNLAKTYELLRRIAPGSLRKLIDLLLKR 88
Query: 65 YMIDNIILLITGTLHQRPISELIPKCHPLG-SFEQMEAIHVAATPAELYNAVLVDTPLAP 123
+ I NI LI G L RP E++ PLG FE+M+ + A T E+ N VL TP AP
Sbjct: 89 WDIWNIKTLIRGKLAGRPAEEVLELLIPLGEVFEKMKELADAKTIEEVVN-VLEGTPYAP 147
Query: 124 FFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
+SE DE NIEII NTLYK Y E F K GG A + E L
Sbjct: 148 PLQKALSE--YDETNIEIIENTLYKRYYEELLKFAKSRGGKEAKILREFL 195
>gnl|CDD|224444 COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase subunit C [Energy
production and conversion].
Length = 346
Score = 95.9 bits (239), Expect = 4e-24
Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 5 NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
L+ TDY L + S L +++ L KLV + + + + +D Y
Sbjct: 40 EFARVLEETDYKEDLDSLTS-LGPDLLEKALNRKLVDTYRLILRISPGSIKKLIDAYLYK 98
Query: 65 YMIDNIILLITGTLH--QRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLA 122
+ I+NI L+ L IS+L PLG FE + + A T E+ + T LA
Sbjct: 99 WDIENIKTLLRAKLAGDPEEISDL---LIPLGDFETLLTLAEAKTMEEVVETLEGTTYLA 155
Query: 123 PFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
P D +IE + N L KAY E G + + E L
Sbjct: 156 PLEEALRDY--EDTGDIEPLENALDKAYYEDLLRSVNSEKG--DELLREFL 202
>gnl|CDD|234917 PRK01198, PRK01198, V-type ATP synthase subunit C; Provisional.
Length = 352
Score = 33.3 bits (77), Expect = 0.047
Identities = 29/156 (18%), Positives = 45/156 (28%), Gaps = 23/156 (14%)
Query: 9 HLQGTDYGSFLANEPSPL-AVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMI 67
L+ T+Y + S +I+ L L + + + L +D + I
Sbjct: 46 FLEETEYKEEIDELGSRYSGPDLIEKALNRNLAKTYELLLEISPGRLKELVDVYLRKWDI 105
Query: 68 DNIILLITGTLHQRPISELIPKCHPLGSF-----------EQMEAIHVAATPAELYNAVL 116
NI L+ G + E+ P G + +E I E Y
Sbjct: 106 HNIKTLLRGKILGLDAEEIEELLIPAGELDLEKLKELLEAKSVEEIVKILEGTEYYE--- 162
Query: 117 VDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAYLE 152
L D DL + L K Y E
Sbjct: 163 ---VLEEALEDYEETGDLQPIENA-----LDKYYYE 190
>gnl|CDD|215798 pfam00218, IGPS, Indole-3-glycerol phosphate synthase.
Length = 254
Score = 30.7 bits (70), Expect = 0.30
Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 27 AVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMID-------NIILLITGTLH 79
A+SV+ + + +E++ AV DFI Y I + +LLI L
Sbjct: 84 AISVLTEPKYFQGSLEYLREVREAVSLPVLRKDFIIDEYQIYEARAYGADTVLLIVAVLS 143
Query: 80 QRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPL 121
+ EL LG ME + EL A+ + L
Sbjct: 144 DELLEELYEYARSLG----MEPLVEVHNEEELERALALGAKL 181
>gnl|CDD|130898 TIGR01839, PHA_synth_II, poly(R)-hydroxyalkanoic acid synthase,
class II. This model represents the class II subfamily
of poly(R)-hydroxyalkanoate synthases, which polymerizes
hydroxyacyl-CoAs, typically with six to fourteen carbons
in the hydroxyacyl backbone into aliphatic esters termed
poly(R)-hydroxyalkanoic acids. These polymers accumulate
as carbon and energy storage inclusions in many species
and can amount to 90 percent of the dry weight of cell
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 560
Score = 31.0 bits (70), Expect = 0.31
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 91 HPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKAY 150
PL S A H+AA +L N +L DT L P + D + N Y+ Y
Sbjct: 45 QPLHS-----AKHLAAFGGQLGNVLLGDTSLQP------NPDDRRFNDPAWSNNPFYRRY 93
Query: 151 LEAFYDFCKKL 161
L+A+ + K+L
Sbjct: 94 LQAYLAWQKQL 104
>gnl|CDD|234710 PRK00278, trpC, indole-3-glycerol-phosphate synthase; Reviewed.
Length = 260
Score = 29.7 bits (68), Expect = 0.61
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 59 DFITYSYMID-------NIILLITGTLHQRPISELIPKCHPLGSFEQMEAI---HVAATP 108
DFI Y I + ILLI L + EL+ H LG ++ + H
Sbjct: 118 DFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG----LDVLVEVH---DE 170
Query: 109 AELYNAVLVDTPL 121
EL A+ + PL
Sbjct: 171 EELERALKLGAPL 183
>gnl|CDD|223212 COG0134, TrpC, Indole-3-glycerol phosphate synthase [Amino acid
transport and metabolism].
Length = 254
Score = 29.5 bits (67), Expect = 0.85
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 59 DFITYSYMID-------NIILLITGTLHQRPISELIPKCHPLGSFEQMEAI 102
DFI Y I + +LLI L + EL+ + H LG ME +
Sbjct: 114 DFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELG----MEVL 160
>gnl|CDD|235138 PRK03604, moaC, bifunctional molybdenum cofactor biosynthesis
protein MoaC/MogA; Provisional.
Length = 312
Score = 29.1 bits (66), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 84 SELIPKCHPLG------SFE-QMEAIHVAAT 107
SELIP CHPL FE + + I + AT
Sbjct: 66 SELIPLCHPLPLSWVDVEFEIEDDRIRIEAT 96
>gnl|CDD|202068 pfam01967, MoaC, MoaC family. Members of this family are
involved in molybdenum cofactor biosynthesis. However
their molecular function is not known.
Length = 136
Score = 28.0 bits (63), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 74 ITGTLHQRPISELIPKCHPLG 94
I G + + SELIP CHPL
Sbjct: 46 IAGIMAAKRTSELIPLCHPLP 66
>gnl|CDD|238203 cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an
enzyme in the tryptophan biosynthetic pathway,
catalyzing the ring closure reaction of
1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate
(CdRP) to indole-3-glycerol phosphate (IGP), accompanied
by the release of carbon dioxide and water. IGPS is
active as a separate monomer in most organisms, but is
also found fused to other enzymes as part of a
bifunctional or multifunctional enzyme involved in
tryptophan biosynthesis.
Length = 217
Score = 28.6 bits (65), Expect = 1.6
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 59 DFITYSYMID-------NIILLITGTLHQRPISELIPKCHPLGSFEQMEAI---HVAATP 108
DFI Y I + +LLI L + EL LG ME + H
Sbjct: 79 DFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELG----MEVLVEVH---DE 131
Query: 109 AEL 111
EL
Sbjct: 132 EEL 134
>gnl|CDD|238708 cd01420, MoaC_PE, MoaC family, prokaryotic and eukaryotic. Members
of this family are involved in molybdenum cofactor
(Moco) biosynthesis, an essential cofactor of a diverse
group of redox enzymes. MoaC, a small hexameric protein,
converts, together with MoaA, a guanosine derivative to
the precursor Z by inserting the carbon-8 of the purine
between the 2' and 3' ribose carbon atoms, which is the
first of three phases of Moco biosynthesis.
Length = 140
Score = 27.9 bits (63), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 84 SELIPKCHPLG------SFE---QMEAIHVAAT 107
SELIP CHPL FE + + + AT
Sbjct: 56 SELIPLCHPLPLTGVDVDFELDEETSGVRIEAT 88
>gnl|CDD|238707 cd01419, MoaC_A, MoaC family, archaeal. Members of this family
are involved in molybdenum cofactor (Moco)
biosynthesis, an essential cofactor of a diverse group
of redox enzymes. MoaC, a small hexameric protein,
converts, together with MoaA, a guanosine derivative to
the precursor Z by inserting the carbon-8 of the purine
between the 2' and 3' ribose carbon atoms, which is the
first of three phases of Moco biosynthesis.
Length = 141
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 74 ITGTLHQRPISELIPKCHPL 93
I G L + ELIP CHP+
Sbjct: 46 IAGILAVKKTPELIPMCHPI 65
>gnl|CDD|238293 cd00528, MoaC, MoaC family. Members of this family are involved in
molybdenum cofactor (Moco) biosynthesis, an essential
cofactor of a diverse group of redox enzymes. MoaC, a
small hexameric protein, converts, together with MoaA, a
guanosine derivative to the precursor Z by inserting the
carbon-8 of the purine between the 2' and 3' ribose
carbon atoms, which is the first of three phases of Moco
biosynthesis.
Length = 136
Score = 27.9 bits (63), Expect = 2.0
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 74 ITGTLHQRPISELIPKCHPLG------SFE---QMEAIHVAAT 107
I G + + SELIP CHPL FE + + AT
Sbjct: 46 IAGIMAAKRTSELIPLCHPLPLTGVDVDFELDEDTSGVRIRAT 88
>gnl|CDD|223392 COG0315, MoaC, Molybdenum cofactor biosynthesis enzyme [Coenzyme
metabolism].
Length = 157
Score = 28.0 bits (63), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 74 ITGTLHQRPISELIPKCHPL 93
I G + + SELIP CHPL
Sbjct: 60 IAGIMAAKRTSELIPLCHPL 79
>gnl|CDD|236483 PRK09364, moaC, molybdenum cofactor biosynthesis protein MoaC;
Provisional.
Length = 159
Score = 27.8 bits (63), Expect = 2.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 84 SELIPKCHPL 93
S+LIP CHPL
Sbjct: 70 SDLIPLCHPL 79
>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase.
Length = 577
Score = 28.1 bits (63), Expect = 2.6
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 7 KLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLD 59
L QG D +P + +I DK +K+ H H + PL F++
Sbjct: 101 ALEKQGVDV------QPKSSTIRIIQDKYAQKV-----HFSKHGI-PLPEFME 141
>gnl|CDD|129670 TIGR00581, moaC, molybdenum cofactor biosynthesis protein MoaC.
MoaC catalyzes an early step in molybdenum cofactor
biosynthesis in E. coli. The Arabidopsis homolog Cnx3
complements MoaC deficiency in E. coli (MUID:95197640).
Eukarotic members of this family branch within the
bacterial branch, with the archaeal members as an
apparent outgroup. This protein is absent in a number of
the pathogens with smaller genomes, including
Mycoplasmas, Chlamydias, and spirochetes, but is found
in most other complete genomes to date. The homolog form
Synechocystis sp. is fused to a MobA-homologous region
and is an outlier to all other bacterial forms by both
neighbor-joining and UPGMA analyses. Members of this
family are well-conserved. The seed for this model
excludes both archaeal sequences and the most divergent
bacterial sequences, but still finds all candidate MoaC
sequences easily between trusted and noise cutoffs. We
suggest that sequences branching outside the set that
contains all seed members be regarded only as putative
functional equivalents of MoaC unless and until a member
of the archaeal outgroup is shown to have equivalent
function [Biosynthesis of cofactors, prosthetic groups,
and carriers, Molybdopterin].
Length = 147
Score = 27.0 bits (60), Expect = 3.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 74 ITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAEL 111
I G + + +LIP CHPL + + V T E
Sbjct: 57 IAGIMAAKRTGDLIPLCHPLP----LSKVEVELTVRED 90
>gnl|CDD|232985 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This model models just the
eukaryotic cytosolic and archaeal forms of the enzyme.
In some eukaryotes, the glutamyl-tRNA synthetase is part
of a longer, multifunctional aminoacyl-tRNA ligase. In
many species, the charging of tRNA(gln) proceeds first
through misacylation with Glu and then transamidation.
For this reason, glutamyl-tRNA synthetases, including
all known archaeal enzymes (as of 2010) may act on both
tRNA(gln) and tRNA(glu) [Protein synthesis, tRNA
aminoacylation].
Length = 556
Score = 27.1 bits (60), Expect = 6.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 123 PFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKL 161
P D I E DL+ + ++ +E +YD+ +KL
Sbjct: 142 PEAYDMILE-DLEWLGVKWDEVVYQSDRIETYYDYTRKL 179
>gnl|CDD|237734 PRK14500, PRK14500, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MoaC/MobA;
Provisional.
Length = 346
Score = 26.4 bits (58), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 73 LITGTLHQRPISELIPKCHPL 93
+I GT+ + ++LIP CH L
Sbjct: 59 IIAGTMAVKRTADLIPFCHTL 79
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.412
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,138,392
Number of extensions: 859570
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 32
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)