RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12607
(175 letters)
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C
subunit, thermus thermophi riken structural
genomics/proteomics initiative; 1.85A {Thermus
thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Length = 323
Score = 100 bits (249), Expect = 5e-26
Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 10/154 (6%)
Query: 9 HLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMID 68
L T YG LA + P +D + + + + +
Sbjct: 39 LLSETVYGGELAGQGLPD----VDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLH 94
Query: 69 NIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVD-TPLAPFFVD 127
N+ L+ RP E++ L E + A PA + + V PLA
Sbjct: 95 NLQALLRAKATGRPFEEVLLLPGTL-REEVWRQAYEAQDPAGMAQVLAVPGHPLARALRA 153
Query: 128 CISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKL 161
+ E ++ + L K + E K L
Sbjct: 154 VLRE----TQDLARVEALLAKRFFEDVAKAAKGL 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 2e-04
Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 63/193 (32%)
Query: 17 SFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITY------------- 63
F P P DD+ E + FL +++
Sbjct: 36 QFNKILPEPTEGFAADDEP------------TTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 64 ----------SYMIDNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAE--- 110
Y+ N I + L Q + L+ + ++ + A +A P +
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKS 141
Query: 111 ---LYNAVLVDTPLAPFFVDCI------SEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKL 161
L+ A V A I ++ +E+ R+ LY+ Y D K
Sbjct: 142 NSALFRA--VGEGNAQLVA--IFGGQGNTDDYFEEL-----RD-LYQTYHVLVGDLIK-- 189
Query: 162 GGTTADTMCEILS 174
+A+T+ E++
Sbjct: 190 --FSAETLSELIR 200
Score = 38.1 bits (88), Expect = 0.001
Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 68/203 (33%)
Query: 10 LQGTDYGSFLANEPSPLAVSVIDDKLREKLVIE-FIHMRNHAVEPLS------------- 55
L+G D + A L ++ K +I+ +I R A P
Sbjct: 96 LEGNDIHALAAK----LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 56 ----------------TFLD-----FITYSYMIDNIILLITGTLHQRPISEL-IPKCHPL 93
+ + + TY ++ ++I TL + + L K
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 94 GSFEQMEAI-HVAATPAELYNAVLVDTPLA-PFFVDCISEQDLDEMNIEIIRNTLYKAYL 151
G +E + + + TP + Y L+ P++ P I +I+ L
Sbjct: 212 G-LNILEWLENPSNTPDKDY---LLSIPISCPL--------------IGVIQ-------L 246
Query: 152 EAFYDFCKKLGGTTADTMCEILS 174
+ K LG T + + L
Sbjct: 247 AHYVVTAKLLGFTPGE-LRSYLK 268
Score = 30.8 bits (69), Expect = 0.26
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 29/100 (29%)
Query: 11 QGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMR--------NH------------- 49
G +A P +A S + L+ V+E + R N+
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQY--VVERVGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Query: 50 -AVEPLSTFLDFITYSYMIDNI-ILLITGTLHQRPISELI 87
A++ ++ L+FI + I I+ + +L + +
Sbjct: 1860 RALDTVTNVLNFI----KLQKIDIIELQKSLSLEEVEGHL 1895
>3uy7_A KEMP eliminase KE59 R1 7/10H; structural genomics, israel
structural proteomics center, is barrel, lyase; 1.45A
{Escherichia coli} PDB: 3uxd_A* 3uxa_A* 3nyz_A 3nz1_A*
3uy8_A 3uyc_A 3uzj_A 3uz5_A 1igs_A 1juk_A 1jul_A* 3tc7_A
3tc6_A 1a53_A* 1lbf_A* 1lbl_A* 3nl8_A* 3nxf_A* 3o6y_X
3ud6_A* ...
Length = 252
Score = 31.4 bits (72), Expect = 0.095
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 59 DFITYSYMID-------NIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAEL 111
DFI ID + + LI L +R + L+ G ME V +L
Sbjct: 111 DFIVKESQIDDAYNLGADTVSLIVKILTERELESLLEYARSYG----MEPAIVINDEEDL 166
Query: 112 YNAVLVDTPL 121
A+ + +
Sbjct: 167 DIALRIGARI 176
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T
structural genomics consortium, TBSGC, lyase; 1.29A
{Mycobacterium tuberculosis}
Length = 272
Score = 31.4 bits (72), Expect = 0.10
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 59 DFITYSYMI--------DNIILLITGTLHQRPISELIPKCHPLGSFEQMEAIHVAATPAE 110
DF+ Y I D ++LLI L Q + ++ + LG M A+ T E
Sbjct: 120 DFVVQPYQIHEARAHGAD-MLLLIVAALEQSVLVSMLDRTESLG----MTALVEVHTEQE 174
Query: 111 LYNAVLVDTPL 121
A+ +
Sbjct: 175 ADRALKAGAKV 185
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B*
2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Length = 637
Score = 29.3 bits (66), Expect = 0.75
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 18 FLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLD 59
+L+ D EKL+ + M V+ LS+ LD
Sbjct: 593 YLSGAFKEFGD---DAAEAEKLIDGRLFMGMDVVDTLSSTLD 631
>2eey_A Molybdopterin biosynthesis; molybdenium precursor bosynthesis,
structural genomics; 1.94A {Geobacillus kaustophilus}
Length = 162
Score = 27.9 bits (63), Expect = 1.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 84 SELIPKCHPL 93
++LIP CHPL
Sbjct: 70 ADLIPMCHPL 79
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum
cofactor (MOCO), MOCO biosynthesis, MOCO DE
translation; 2.00A {Escherichia coli} SCOP: d.58.21.1
PDB: 1eks_A*
Length = 161
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 84 SELIPKCHPL 93
+LIP CHPL
Sbjct: 70 WDLIPLCHPL 79
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum
cofactor (MOCO), MOCO biosynthesis, structu genomics,
NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A
3jqk_A 3jqm_A*
Length = 157
Score = 27.9 bits (63), Expect = 1.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 84 SELIPKCHPL 93
++LIP CHPL
Sbjct: 68 ADLIPLCHPL 77
>2ekn_A Probable molybdenum cofactor biosynthesis protein; structural
genomic NPPSFA, national project on protein structural
and function analyses; HET: FLC; 2.05A {Pyrococcus
horikoshii}
Length = 159
Score = 28.0 bits (63), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 84 SELIPKCHPLG------SFE-QMEAIHVAAT 107
ELIP CHP+ +F+ + I V
Sbjct: 70 PELIPLCHPIPITGVDITFDFGEDYIEVTCE 100
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta,
biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Length = 151
Score = 27.6 bits (62), Expect = 1.4
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 84 SELIPKCHPLG------SFE-QMEAIHVAAT 107
ELIP CHP+ + + E + V +T
Sbjct: 61 PELIPMCHPIPLEFVDVEIKIEEEGLRVIST 91
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.4
Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 49/134 (36%)
Query: 24 SPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYSYMIDNIILLITGTLHQRPI 83
+P +S+I + +R+ D + D +
Sbjct: 326 NPRRLSIIAESIRD--------GLAT--------WDNWKH-VNCDK-------------L 355
Query: 84 SELIPKCHPLGSFEQMEAIHVAATPAE---LYNAVLV---DTPLAPFFVDCISEQDLDEM 137
+ +I S +E PAE +++ + V + P + + D+ +
Sbjct: 356 TTIIES-----SLNVLE-------PAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKS 402
Query: 138 NIEIIRNTLYKAYL 151
++ ++ N L+K L
Sbjct: 403 DVMVVVNKLHKYSL 416
>2hhi_A Antigen MPT64, immunogenic protein MPT64; secreted antigen,
residual dipolar COUP solution structure, beta-grAsp,
unknown function; NMR {Mycobacterium tuberculosis}
Length = 204
Score = 26.5 bits (58), Expect = 4.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 156 DFCKKLGGTTADTMCEI 172
+C++L GT C+I
Sbjct: 3 TYCEELKGTDTGQACQI 19
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A
{Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1
b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A*
2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A*
Length = 848
Score = 26.6 bits (58), Expect = 5.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 132 QDLDEMNIEIIRNTLYKAYL-EAFYDFCKKLG 162
+D+ E N+ ++R Y FYD + G
Sbjct: 359 RDMKEANMNMVRIWGGGTYENNLFYDLADENG 390
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 26.3 bits (58), Expect = 6.2
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 125 FVDCISEQDLD--------EMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEILSK 175
+ + I ++ + M I+ + T Y + FY+ K +T D +L+
Sbjct: 380 YNEWIVKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDKKSYSTIDKFLNLLNN 438
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.412
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,720,918
Number of extensions: 158863
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 25
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)