RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12607
         (175 letters)



>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus
           thermophilus [TaxId: 274]}
          Length = 319

 Score = 91.6 bits (227), Expect = 3e-23
 Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 17/172 (9%)

Query: 5   NLKLHLQGTDYGSFLANEPSPLAVSVIDDKLREKLVIEFIHMRNHAVEPLSTFLDFITYS 64
           +    L  T YG  LA +  P     +D  +          +           +  +   
Sbjct: 31  DFLRLLSETVYGGELAGQGLPD----VDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLR 86

Query: 65  YMIDNIILLITGTLHQRPISELIPKCHPLGSF--EQMEAIHVAATPAELYNAVLV-DTPL 121
             + N+  L+      RP  E++      G+   E     + A  PA +   + V   PL
Sbjct: 87  NDLHNLQALLRAKATGRPFEEVL---LLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPL 143

Query: 122 APFFVDCISEQDLDEMNIEIIRNTLYKAYLEAFYDFCKKLGGTTADTMCEIL 173
           A            +  ++  +   L K + E      K   G     + + L
Sbjct: 144 ARAL----RAVLRETQDLARVEALLAKRFFEDVAKAAK---GLDQPALRDYL 188


>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase
           (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}
          Length = 332

 Score = 26.1 bits (56), Expect = 2.9
 Identities = 6/89 (6%), Positives = 18/89 (20%)

Query: 82  PISELIPKCHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEI 141
           P    I            +++    + +   ++    +              +       
Sbjct: 23  PDEADIKSFMQSEKQNGYQSVKKNLSNSGSSSSSSNSSSGKGELFAPQMGGQMLLAETPP 82

Query: 142 IRNTLYKAYLEAFYDFCKKLGGTTADTMC 170
                   +   F  FC  +   T +   
Sbjct: 83  KEAQEKDEFFYFFNHFCFYIINETKEYAL 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 662,641
Number of extensions: 29936
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 7
Length of query: 175
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,322,926
Effective search space: 127000896
Effective search space used: 127000896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.2 bits)