Query psy12608
Match_columns 65
No_of_seqs 109 out of 1400
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 23:38:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.8 1.9E-19 6.4E-24 107.5 3.7 64 2-65 204-279 (303)
2 1okc_A ADP, ATP carrier protei 99.7 6.9E-19 2.3E-23 104.6 4.1 64 2-65 9-91 (297)
3 1okc_A ADP, ATP carrier protei 99.7 8.6E-19 2.9E-23 104.2 3.9 63 3-65 115-194 (297)
4 2lck_A Mitochondrial uncouplin 99.7 1.5E-18 5E-23 103.6 3.3 64 2-65 106-185 (303)
5 2d9d_A BAG family molecular ch 35.8 25 0.00084 17.4 1.8 35 22-56 14-48 (89)
6 2a3d_A Protein (de novo three- 31.5 30 0.001 15.9 1.6 16 17-32 7-22 (73)
7 2da7_A Zinc finger homeobox pr 26.3 52 0.0018 15.6 2.0 20 13-32 38-57 (71)
8 4b19_A PEPA1; toxin, toxin apo 25.2 32 0.0011 13.6 1.0 20 3-22 6-25 (30)
9 2z5i_I TM, tropomyosin alpha-1 18.7 46 0.0016 14.0 0.9 13 20-32 4-16 (40)
10 1xv5_A AGT, DNA alpha-glucosyl 18.4 27 0.00092 20.8 0.1 14 19-32 177-190 (401)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.77 E-value=1.9e-19 Score=107.49 Aligned_cols=64 Identities=25% Similarity=0.385 Sum_probs=59.1
Q ss_pred hhhhhhHHHHHHHHhhhccHHHHHHHHHhcc------------cchhccccccccccchHHHHhHHHhHhhhheeC
Q psy12608 2 SSDDAGASAGVVVDVVLYPLDTIKTRLQSQY------------GFWRSGGFKAIYKGLGPAAISSPIQEYTVIVVF 65 (65)
Q Consensus 2 ~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~------------~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y 65 (65)
.++++|++|+++++.+++|+|++|+|+|.+. +++++||++|||||+.|+++|.+|.++++|.+|
T Consensus 204 ~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~y 279 (303)
T 2lck_A 204 CHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHH
Confidence 3578999999999999999999999999874 378999999999999999999999999999876
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.75 E-value=6.9e-19 Score=104.63 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=58.8
Q ss_pred hhhhhhHHHHHHHHhhhccHHHHHHHHHhcc-------------------cchhccccccccccchHHHHhHHHhHhhhh
Q psy12608 2 SSDDAGASAGVVVDVVLYPLDTIKTRLQSQY-------------------GFWRSGGFKAIYKGLGPAAISSPIQEYTVI 62 (65)
Q Consensus 2 ~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~-------------------~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~ 62 (65)
+++++|++|++++.++++|+|++|+|+|.+. +++++||++|||||+.+++++.+|..+++|
T Consensus 9 ~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 88 (297)
T 1okc_A 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNF 88 (297)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999873 268999999999999999999999999999
Q ss_pred eeC
Q psy12608 63 VVF 65 (65)
Q Consensus 63 ~~y 65 (65)
.+|
T Consensus 89 ~~y 91 (297)
T 1okc_A 89 AFK 91 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.74 E-value=8.6e-19 Score=104.21 Aligned_cols=63 Identities=25% Similarity=0.470 Sum_probs=58.2
Q ss_pred hhhhhHHHHHHHHhhhccHHHHHHHHHhcc-----------------cchhccccccccccchHHHHhHHHhHhhhheeC
Q psy12608 3 SDDAGASAGVVVDVVLYPLDTIKTRLQSQY-----------------GFWRSGGFKAIYKGLGPAAISSPIQEYTVIVVF 65 (65)
Q Consensus 3 ~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~-----------------~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y 65 (65)
++++|++|++++..+++|+|++|+|+|++. +++++||++|||||+.++++|.+|.++++|.+|
T Consensus 115 ~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~y 194 (297)
T 1okc_A 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVY 194 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999873 278999999999999999999999999999875
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.73 E-value=1.5e-18 Score=103.60 Aligned_cols=64 Identities=28% Similarity=0.461 Sum_probs=59.0
Q ss_pred hhhhhhHHHHHHHHhhhccHHHHHHHHHhcc----------------cchhccccccccccchHHHHhHHHhHhhhheeC
Q psy12608 2 SSDDAGASAGVVVDVVLYPLDTIKTRLQSQY----------------GFWRSGGFKAIYKGLGPAAISSPIQEYTVIVVF 65 (65)
Q Consensus 2 ~~~~~g~~a~~~~~~~~~P~d~ik~~~q~~~----------------~i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~y 65 (65)
..+++|++|++++..+++|+|++|+|+|.+. +++++||++|||||+.+++++.+|..+++|.+|
T Consensus 106 ~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~y 185 (303)
T 2lck_A 106 SRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTY 185 (303)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999874 278999999999999999999999999999876
No 5
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.78 E-value=25 Score=17.42 Aligned_cols=35 Identities=6% Similarity=-0.044 Sum_probs=25.5
Q ss_pred HHHHHHHHhcccchhccccccccccchHHHHhHHH
Q psy12608 22 DTIKTRLQSQYGFWRSGGFKAIYKGLGPAAISSPI 56 (65)
Q Consensus 22 d~ik~~~q~~~~i~~~~G~~~ly~G~~~~~~~~~~ 56 (65)
|+.|.-.+.++.+.+.+|.+-.|.|....+-+.+.
T Consensus 14 ~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~ 48 (89)
T 2d9d_A 14 KVLKRMREIKNELLQAQNPSELYLSSKTELQGLIG 48 (89)
T ss_dssp HHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHH
Confidence 44455556666788999999999998887766543
No 6
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=31.50 E-value=30 Score=15.88 Aligned_cols=16 Identities=44% Similarity=0.341 Sum_probs=12.2
Q ss_pred hhccHHHHHHHHHhcc
Q psy12608 17 VLYPLDTIKTRLQSQY 32 (65)
Q Consensus 17 ~~~P~d~ik~~~q~~~ 32 (65)
+-+-+..||+|+|.-.
T Consensus 7 fkqrlaaiktrlqalg 22 (73)
T 2a3d_A 7 FKQRLAAIKTRLQALG 22 (73)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456778999999865
No 7
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.27 E-value=52 Score=15.64 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=15.6
Q ss_pred HHHhhhccHHHHHHHHHhcc
Q psy12608 13 VVDVVLYPLDTIKTRLQSQY 32 (65)
Q Consensus 13 ~~~~~~~P~d~ik~~~q~~~ 32 (65)
++..+..|.|+||+..|..+
T Consensus 38 LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 38 ISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp HHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHhhcc
Confidence 45567789999999988754
No 8
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=25.24 E-value=32 Score=13.61 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=12.9
Q ss_pred hhhhhHHHHHHHHhhhccHH
Q psy12608 3 SDDAGASAGVVVDVVLYPLD 22 (65)
Q Consensus 3 ~~~~g~~a~~~~~~~~~P~d 22 (65)
++++-.++|+..+.+++-++
T Consensus 6 ~iia~visGcivalF~hWL~ 25 (30)
T 4b19_A 6 HIIAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp SSTTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777654
No 9
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=18.67 E-value=46 Score=13.99 Aligned_cols=13 Identities=31% Similarity=0.486 Sum_probs=9.4
Q ss_pred cHHHHHHHHHhcc
Q psy12608 20 PLDTIKTRLQSQY 32 (65)
Q Consensus 20 P~d~ik~~~q~~~ 32 (65)
.+|.||-+||.-.
T Consensus 4 ~MdAIKKKMq~lK 16 (40)
T 2z5i_I 4 SMDAIKKKMQMLK 16 (40)
T ss_dssp -CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4688999998643
No 10
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=18.36 E-value=27 Score=20.78 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=11.6
Q ss_pred ccHHHHHHHHHhcc
Q psy12608 19 YPLDTIKTRLQSQY 32 (65)
Q Consensus 19 ~P~d~ik~~~q~~~ 32 (65)
-|+|.+|+|---..
T Consensus 177 ppmdivkvrstywk 190 (401)
T 1xv5_A 177 PPMDIVKVRSTYWK 190 (401)
T ss_dssp CCBCHHHHHHHHCC
T ss_pred CCceeeeeehhhhc
Confidence 48999999988765
Done!