RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12608
         (65 letters)



>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
           transporter, nucleotide translocation, membrane protein,
           transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
           f.42.1.1 PDB: 2c3e_A*
          Length = 297

 Score = 49.2 bits (118), Expect = 4e-09
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 17/61 (27%)

Query: 6   AGASAGVVVDVVLYPLDTIKTRLQSQYGF-----------------WRSGGFKAIYKGLG 48
           +G +AG      +YPLD  +TRL +  G                  ++S G + +Y+G  
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177

Query: 49  P 49
            
Sbjct: 178 V 178



 Score = 40.7 bits (96), Expect = 4e-06
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 17/61 (27%)

Query: 6   AGASAGVVVDVVLYPLDTIKTRLQSQYGF-----------------WRSGGFKAIYKGLG 48
              +   V  +V YP DT++ R+  Q G                   +  G KA +KG  
Sbjct: 215 IAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAW 274

Query: 49  P 49
            
Sbjct: 275 S 275



 Score = 38.0 bits (89), Expect = 4e-05
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 19/63 (30%)

Query: 6  AGASAGVVVDVVLYPLDTIKTRLQSQYGF-------------------WRSGGFKAIYKG 46
          AG  A  +    + P++ +K  LQ Q+                      +  GF + ++G
Sbjct: 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG 72

Query: 47 LGP 49
             
Sbjct: 73 NLA 75


>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
          translocator, mitochondrial carrier transport protein,
          structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 22/67 (32%)

Query: 6  AGASAGVVVDVVLYPLDTIKTRLQSQ----------------------YGFWRSGGFKAI 43
             +A  + D++ +PLDT K RLQ Q                          R+ G +++
Sbjct: 7  GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSL 66

Query: 44 YKGLGPA 50
          Y GL   
Sbjct: 67 YNGLVAG 73



 Score = 46.1 bits (110), Expect = 6e-08
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 12/57 (21%)

Query: 6   AGASAGVVVDVVLYPLDTIKTRLQSQ----Y-GFW-------RSGGFKAIYKGLGPA 50
           +   AG    V+  P+D +KTR  +     Y           R  G +A YKG  P+
Sbjct: 208 SAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPS 264



 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 16/63 (25%)

Query: 6   AGASAGVVVDVVLYPLDTIKTRLQSQ----------------YGFWRSGGFKAIYKGLGP 49
           AG++ G +   V  P D +K R Q+Q                    R  G + ++KG  P
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169

Query: 50  AAI 52
              
Sbjct: 170 NVA 172


>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
           helicase, acetyltransferase, GCN5 acetyltransferase;
           HET: ACO ADP; 2.35A {Escherichia coli K12}
          Length = 671

 Score = 28.5 bits (63), Expect = 0.10
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 32  YGFWRSGGFKAIYKGLGPAAISSPIQEYTVIVV 64
           + FW+  GF  +  G    A S     YT + +
Sbjct: 501 WRFWQRCGFVLVRMGNHREASSG---CYTAMAL 530


>2yyn_A Transcription intermediary factor 1-alpha; bromo domain,
          structural genomics, NPPSFA; 2.50A {Homo sapiens}
          Length = 135

 Score = 24.6 bits (54), Expect = 2.2
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 15 DVVLYPLD--TIKTRLQSQYGFWRS 37
           ++  P+D  TIK RLQ  Y  +  
Sbjct: 54 KIIKNPMDLSTIKKRLQEDYSMYSK 78


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,019,618
Number of extensions: 46811
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 8
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)