RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12608
         (65 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
          heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 48.6 bits (114), Expect = 3e-09
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 6  AGASAGVVVDVVLYPLDTIKTRLQSQYGFWRSGGFKAIYKGLGPAAISSPIQEY 59
          AG  A  +    + P++ +K  LQ Q    +    +  YKG+    +  P ++ 
Sbjct: 12 AGGVAAAISKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQG 64



 Score = 28.5 bits (62), Expect = 0.041
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 17/61 (27%)

Query: 12  VVVDVVLYPLDTIKTRLQSQYGF-----------------WRSGGFKAIYKGLGPAAISS 54
            V  +V YP DT++ R+  Q G                   +  G KA +KG     +  
Sbjct: 220 AVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG 279

Query: 55  P 55
            
Sbjct: 280 M 280



 Score = 27.4 bits (59), Expect = 0.11
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 1   MSSDDAGASAGVVVDVVLYPLDTIKTRLQSQY 32
             +  +G +AG      +YPLD  +TRL +  
Sbjct: 112 AGNLASGGAAGATSLCFVYPLDFARTRLAADV 143


>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major
          capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
          Length = 103

 Score = 23.4 bits (50), Expect = 1.9
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 7  GASAGVVVDVVLYPLDTIKTRLQSQYGFWRSGGFK 41
          G  AG  V +++ PL+  +T L     +++SG F 
Sbjct: 43 GQKAGSAVGILVLPLEGTETALT----YYKSGTFA 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,084
Number of extensions: 8326
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)