BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12609
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
           Tyrosine Receptor Phosphatase Beta
 pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
           Tyrosine Receptor Phosphatase Beta
          Length = 295

 Score = 28.9 bits (63), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 65  EQECRNIVWISECVAQKHRTKIDNYIP 91
           EQ   NIV +++CV +K R K D+Y P
Sbjct: 116 EQNVHNIVMVTQCV-EKGRVKCDHYWP 141


>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With Inhibitors
 pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With Inhibitors
 pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With Inhibitors
 pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
           Phosphatase Hptpbeta
 pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
           Phosphatase Hptpbeta
 pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With Inhibitors
 pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With Inhibitors
 pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With Inhibitors
 pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With A Sulfamic Acid
           (Soaking Experiment)
 pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain Co-Crystallized With A Sulfamic Acid
           Inhibitor
 pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
           Crystallization Properties
 pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
           Crystallization Properties
          Length = 313

 Score = 28.9 bits (63), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 65  EQECRNIVWISECVAQKHRTKIDNYIP 91
           EQ   NIV +++CV +K R K D+Y P
Sbjct: 132 EQNVHNIVMVTQCV-EKGRVKCDHYWP 157


>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
           Catalytic Domain In Complex With Inhibitors
 pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
           Phosphatase Hptpbeta.
 pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
           Domain
          Length = 291

 Score = 28.9 bits (63), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 65  EQECRNIVWISECVAQKHRTKIDNYIP 91
           EQ   NIV +++CV +K R K D+Y P
Sbjct: 113 EQNVHNIVMVTQCV-EKGRVKCDHYWP 138


>pdb|2PYW|A Chain A, Structure Of A. Thaliana 5-Methylthioribose Kinase In
           Complex With Adp And Mtr
 pdb|2PYW|B Chain B, Structure Of A. Thaliana 5-Methylthioribose Kinase In
           Complex With Adp And Mtr
          Length = 420

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 1   MLNTIEIPFNIFPQEYSALFEGAGNDPGDKTLEDKFFEHEV 41
           +L TIE  +N+F + + AL++   + PG+  L D +   EV
Sbjct: 299 ILRTIEQTWNLFNKRFIALWDQNKDGPGEAYLADIYNNTEV 339


>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site.
 pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
           Phosphate Bound In The Active Site
          Length = 879

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 32  LEDKFFEHEV-RLNVYAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRTKI 86
           L+D  F+ +V R++ Y   Q   FG+ Y YL +K    +N   I E VA+K+  K+
Sbjct: 597 LDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNM-LKNGASIEE-VARKYPRKV 650


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.143    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,012,548
Number of Sequences: 62578
Number of extensions: 112290
Number of successful extensions: 290
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 5
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)