Query psy12609
Match_columns 93
No_of_seqs 103 out of 194
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 23:39:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2957|consensus 100.0 6.7E-43 1.5E-47 277.7 6.7 85 8-93 266-350 (350)
2 COG1527 NtpC Archaeal/vacuolar 99.2 8.9E-12 1.9E-16 100.0 5.1 64 29-92 279-345 (346)
3 PF01992 vATP-synt_AC39: ATP s 98.7 7.2E-09 1.6E-13 78.8 2.8 61 30-90 274-336 (337)
4 TIGR02923 AhaC ATP synthase A1 98.4 2.6E-07 5.7E-12 70.7 4.4 68 15-82 263-333 (343)
5 PRK01198 V-type ATP synthase s 97.6 0.0001 2.2E-09 56.6 4.4 53 30-82 288-341 (352)
6 TIGR02923 AhaC ATP synthase A1 61.8 15 0.00032 28.1 4.1 35 55-89 195-230 (343)
7 PRK01198 V-type ATP synthase s 56.3 40 0.00087 25.8 5.7 29 53-82 202-230 (352)
8 PF05566 Pox_vIL-18BP: Orthopo 30.3 15 0.00032 26.4 -0.3 27 46-72 3-29 (126)
9 PF09357 RteC: RteC protein; 28.4 1.4E+02 0.003 22.8 4.7 53 16-71 17-70 (218)
10 smart00292 BRCT breast cancer 27.0 35 0.00077 19.1 1.0 13 69-81 68-80 (80)
11 PF02060 ISK_Channel: Slow vol 24.3 1.2E+02 0.0027 21.9 3.5 28 43-70 48-75 (129)
12 PF06540 GMAP: Galanin message 22.2 55 0.0012 21.0 1.3 11 56-66 31-41 (62)
13 COG1541 PaaK Coenzyme F390 syn 20.3 46 0.001 28.2 0.8 27 9-35 38-65 (438)
No 1
>KOG2957|consensus
Probab=100.00 E-value=6.7e-43 Score=277.66 Aligned_cols=85 Identities=68% Similarity=1.151 Sum_probs=82.2
Q ss_pred ccccCccchHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHhhhhhhhhhHhhhhccccccc
Q psy12609 8 PFNIFPQEYSALFEGAGNDPGDKTLEDKFFEHEVRLNVYAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRTKID 87 (93)
Q Consensus 8 ~v~~~~~~Y~~lfd~~~~~~g~ksLED~F~~~Ev~l~~~aF~qQF~~gvfYa~~KLKEQEiRNi~WIaECIaQ~qk~ri~ 87 (93)
.||+.|++|+.+||..| ++|+|||||+||++||++|++||.|||||||||||+||||||||||+||||||+||||+|||
T Consensus 266 ~v~~~~~~Y~~~fd~~~-~~g~ktLed~f~e~Ev~~~~~aF~qqfh~gvfyay~KlKEQEiRNI~WIAECIaQnqr~ri~ 344 (350)
T KOG2957|consen 266 NVLSTYYEYKALFDKDG-GPGSKTLEDVFYEHEVKLNVLAFLQQFHFGVFYAYMKLKEQEIRNIVWIAECIAQNQRDRID 344 (350)
T ss_pred HHHHhhhhhHhHhhcCC-CCccccHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 48999999999999876 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCC
Q psy12609 88 NYIPIF 93 (93)
Q Consensus 88 ~yI~i~ 93 (93)
+||||+
T Consensus 345 ~~ipi~ 350 (350)
T KOG2957|consen 345 NYIPIM 350 (350)
T ss_pred ccccCC
Confidence 999985
No 2
>COG1527 NtpC Archaeal/vacuolar-type H+-ATPase subunit C [Energy production and conversion]
Probab=99.24 E-value=8.9e-12 Score=99.96 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHhHHhhhhhhhhhHhhhhcc-cccccCcccC
Q psy12609 29 DKTLEDKFFEHEVRLNVYAFLQQFHFG--VFYSYLKLKEQECRNIVWISECVAQKH-RTKIDNYIPI 92 (93)
Q Consensus 29 ~ksLED~F~~~Ev~l~~~aF~qQF~~g--vfYa~~KLKEQEiRNi~WIaECIaQ~q-k~ri~~yI~i 92 (93)
..++++.+...++..+..+|.+++.+| ++++|++.||+|++||.|||+|++|++ +++|.+.+++
T Consensus 279 ~~~~~e~~l~~~~~~~~~~~a~~~p~s~~~v~~yl~~KE~EV~NLr~Ia~~k~~~~~~e~i~~~~~~ 345 (346)
T COG1527 279 SIAVFEEALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEVKNLRWIAEGKANGLPREEIKELLVP 345 (346)
T ss_pred chhHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 478999999999999999999999999 999999999999999999999999999 8998776654
No 3
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=98.72 E-value=7.2e-09 Score=78.78 Aligned_cols=61 Identities=25% Similarity=0.213 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHhHHhhhhhhhhhHhhhhccc-ccccCcc
Q psy12609 30 KTLEDKFFEHEVR-LNVYAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHR-TKIDNYI 90 (93)
Q Consensus 30 ksLED~F~~~Ev~-l~~~aF~qQF~~gvfYa~~KLKEQEiRNi~WIaECIaQ~qk-~ri~~yI 90 (93)
..+|+.+...-++ ..+.++..+|.+|+++||+.+||.|++||.||++|+..+.. ++|.+++
T Consensus 274 ~~~E~~~~~~~~~~~~~~~~~~~~~~~~i~aYl~~ke~Ei~nL~~I~~g~~~gl~~e~I~~~l 336 (337)
T PF01992_consen 274 SELERALDRYLLKKALRLSRRSPFSIGPILAYLILKEIEIRNLRTIIEGKRYGLSPEEIRERL 336 (337)
T ss_dssp HHHHHHHHHHHHH-HHHGGTT-SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhc
Confidence 4788888888888 88889999999999999999999999999999999999887 6666554
No 4
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=98.43 E-value=2.6e-07 Score=70.71 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=53.5
Q ss_pred chHHHhhccC--CCCCCCcHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHhHHhhhhhhhhhHhhhhcc
Q psy12609 15 EYSALFEGAG--NDPGDKTLEDKFFEHEVRLNVY-AFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKH 82 (93)
Q Consensus 15 ~Y~~lfd~~~--~~~g~ksLED~F~~~Ev~l~~~-aF~qQF~~gvfYa~~KLKEQEiRNi~WIaECIaQ~q 82 (93)
.|+..++++- ...+...+|..+-..-++.++. +...+|++|+++||+.+||.|++||.||++|+..+-
T Consensus 263 ~y~~~l~~~~~~~~~~~~~~E~~~d~~~~~~~~~~~~~~~~~~~~~~~yl~~ke~Ei~nlr~I~~gk~~~l 333 (343)
T TIGR02923 263 KYGEDISEVLSEEEKSVAVFERALDEYLIKMATKLSLRYPLSVGPVLGYILKKEREVRNLRAIARGKEEGL 333 (343)
T ss_pred cchHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555555321 1122358888888888888865 899999999999999999999999999999997654
No 5
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=97.57 E-value=0.0001 Score=56.57 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHhHHhhhhhhhhhHhhhhcc
Q psy12609 30 KTLEDKFFEHEVRLNV-YAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKH 82 (93)
Q Consensus 30 ksLED~F~~~Ev~l~~-~aF~qQF~~gvfYa~~KLKEQEiRNi~WIaECIaQ~q 82 (93)
..+|..+...-.+..+ .+....|+++++.+|+.+||+|++||.||++|+.++.
T Consensus 288 ~~~E~~~d~~~~~~~~~~~~~~~~~~~~~l~yl~~~e~Ei~NL~~I~~gk~~~~ 341 (352)
T PRK01198 288 SVFEKALDNYLLEYMKKLSKRYPFSVEPILGYILAKEREVKNLRIIARGKENGL 341 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5777777777777777 4566789999999999999999999999999988775
No 6
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=61.78 E-value=15 Score=28.14 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHhhhhhhhhhHhhhhcc-cccccCc
Q psy12609 55 GVFYSYLKLKEQECRNIVWISECVAQKH-RTKIDNY 89 (93)
Q Consensus 55 gvfYa~~KLKEQEiRNi~WIaECIaQ~q-k~ri~~y 89 (93)
..+.+++=.+|.|++||.||-.|..++. .+.|-++
T Consensus 195 ~~~l~~~~~~eiD~~Nl~~ilr~k~~~~~~e~i~~~ 230 (343)
T TIGR02923 195 TKLFTEFIKTEVDIRNLKTLLRLKAAGLSPDEIMPY 230 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhh
Confidence 4567777779999999999999998864 2344333
No 7
>PRK01198 V-type ATP synthase subunit C; Provisional
Probab=56.29 E-value=40 Score=25.79 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhHHhhhhhhhhhHhhhhcc
Q psy12609 53 HFGVFYSYLKLKEQECRNIVWISECVAQKH 82 (93)
Q Consensus 53 ~~gvfYa~~KLKEQEiRNi~WIaECIaQ~q 82 (93)
....+..|+. ++-|++||.||-.|+.++.
T Consensus 202 ~~~~l~~~~~-~~iD~~Ni~~ilr~k~~~~ 230 (352)
T PRK01198 202 DEKLLLEYVR-TEIDITNIKTLLRLKAQGL 230 (352)
T ss_pred chHHHHHHHH-HHhhHHHHHHHHHHHHcCC
Confidence 3458999999 9999999999999998765
No 8
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=30.32 E-value=15 Score=26.40 Aligned_cols=27 Identities=37% Similarity=0.696 Sum_probs=2.4
Q ss_pred HHHHHhhhhHHHHHHHHHhHHhhhhhh
Q psy12609 46 YAFLQQFHFGVFYSYLKLKEQECRNIV 72 (93)
Q Consensus 46 ~aF~qQF~~gvfYa~~KLKEQEiRNi~ 72 (93)
.-|.--|.||+.++|+---|+++.||.
T Consensus 3 Ilfliaf~~gC~~~~~n~~e~kc~nl~ 29 (126)
T PF05566_consen 3 ILFLIAFMFGCVHSYVNADEHKCPNLD 29 (126)
T ss_dssp ------------------S---S---E
T ss_pred EeehhHHHhcccccccccccccCCCee
Confidence 347778999999999999999999974
No 9
>PF09357 RteC: RteC protein; InterPro: IPR018534 Human colonic Bacteroides species harbour a family of large conjugative transposons, called tetracycline resistance (Tcr) elements. Activities of these elements are enhanced by pregrowth of bacteria in medium containing tetracycline, indicating that at least some Tcr element genes are regulated by tetracycline. An insertional disruption in the rteC gene abolished self-transfer of the Tcr element to Bacteroides recipients, indicating that the gene was essential for self-transfer [].
Probab=28.42 E-value=1.4e+02 Score=22.76 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=40.0
Q ss_pred hHHHhh-ccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHhhhhh
Q psy12609 16 YSALFE-GAGNDPGDKTLEDKFFEHEVRLNVYAFLQQFHFGVFYSYLKLKEQECRNI 71 (93)
Q Consensus 16 Y~~lfd-~~~~~~g~ksLED~F~~~Ev~l~~~aF~qQF~~gvfYa~~KLKEQEiRNi 71 (93)
|.++|. .++...|+...-..+|..|++..+.-|.+ -.-||.|.+...+.....
T Consensus 17 y~~iy~ie~~~p~g~~~~~~~y~~~el~~l~~~f~~---n~~fy~Yyrs~~t~lD~~ 70 (218)
T PF09357_consen 17 YNKIYRIETNKPNGSLEAQKKYFEKELKKLKRFFDD---NLDFYQYYRSGATHLDEY 70 (218)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHhCCccccHh
Confidence 555665 33343456778889999999999999988 778999999888766553
No 10
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=26.95 E-value=35 Score=19.09 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=9.5
Q ss_pred hhhhhhhHhhhhc
Q psy12609 69 RNIVWISECVAQK 81 (93)
Q Consensus 69 RNi~WIaECIaQ~ 81 (93)
=+..||-+|+..+
T Consensus 68 V~~~Wi~~~~~~~ 80 (80)
T smart00292 68 VTEDWLLDCLKAG 80 (80)
T ss_pred ccHHHHHHHHHCc
Confidence 3467999998753
No 11
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=24.25 E-value=1.2e+02 Score=21.92 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHHhhhh
Q psy12609 43 LNVYAFLQQFHFGVFYSYLKLKEQECRN 70 (93)
Q Consensus 43 l~~~aF~qQF~~gvfYa~~KLKEQEiRN 70 (93)
|-...|-.-|..|+.-+|+|.|-.|-++
T Consensus 48 L~vmgfFgff~~gImlsyvRSKK~E~s~ 75 (129)
T PF02060_consen 48 LVVMGFFGFFTVGIMLSYVRSKKREHSH 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4567899999999999999999998876
No 12
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=22.15 E-value=55 Score=20.97 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=8.9
Q ss_pred HHHHHHHHhHH
Q psy12609 56 VFYSYLKLKEQ 66 (93)
Q Consensus 56 vfYa~~KLKEQ 66 (93)
-|-+|++|||-
T Consensus 31 EFLtfLhLKEa 41 (62)
T PF06540_consen 31 EFLTFLHLKEA 41 (62)
T ss_pred HHHHHHHHHHh
Confidence 46789999985
No 13
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=20.27 E-value=46 Score=28.20 Aligned_cols=27 Identities=44% Similarity=0.513 Sum_probs=21.8
Q ss_pred cccCccchHHHhhccCCCCCC-CcHHHH
Q psy12609 9 FNIFPQEYSALFEGAGNDPGD-KTLEDK 35 (93)
Q Consensus 9 v~~~~~~Y~~lfd~~~~~~g~-ksLED~ 35 (93)
|-++.|-|+..|++.+..++. ++|||.
T Consensus 38 ~yeNsPfYr~~f~~~~v~p~~i~~l~Dl 65 (438)
T COG1541 38 VYENSPFYRKKFKEAGVDPDDIKTLEDL 65 (438)
T ss_pred HHhcCHHHHHHHHHcCCChHHhhCHHHH
Confidence 567889999999988776664 699985
Done!