Query psy12609
Match_columns 93
No_of_seqs 103 out of 194
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:39:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9m_A V-type ATP synthase sub 99.5 1.7E-14 5.9E-19 108.1 3.0 69 15-87 248-317 (323)
2 2ebw_A DNA repair protein REV1 57.8 4.3 0.00015 24.8 1.4 23 68-90 72-94 (97)
3 1wf6_A Similar to S.pombe -RAD 50.8 6.9 0.00024 25.7 1.7 25 68-92 103-127 (132)
4 3l3e_A DNA topoisomerase 2-bin 50.3 7.7 0.00026 24.3 1.8 25 68-92 79-103 (107)
5 4id3_A DNA repair protein REV1 50.2 6 0.00021 23.5 1.2 22 69-90 69-90 (92)
6 3pc6_A DNA repair protein XRCC 48.1 7.6 0.00026 25.3 1.5 21 71-91 74-94 (104)
7 2jw5_A DNA polymerase lambda; 43.3 9.2 0.00032 24.6 1.3 23 67-89 79-101 (106)
8 2dun_A POL MU, DNA polymerase 42.8 9.5 0.00032 26.5 1.4 20 67-86 82-101 (133)
9 1v9m_A V-type ATP synthase sub 38.1 35 0.0012 24.7 3.9 33 55-90 186-218 (323)
10 3u3z_A Microcephalin; DNA repa 36.5 13 0.00046 25.9 1.4 21 71-91 177-197 (199)
11 3pa6_A Microcephalin; BRCT dom 36.3 16 0.00055 23.6 1.6 23 68-90 72-94 (107)
12 2coe_A Deoxynucleotidyltransfe 33.4 17 0.00059 24.3 1.5 21 66-86 88-108 (120)
13 2cou_A ECT2 protein; BRCT doma 30.5 22 0.00076 22.5 1.6 24 68-91 73-96 (109)
14 2d8m_A DNA-repair protein XRCC 30.5 20 0.00068 23.3 1.4 25 67-91 82-106 (129)
15 1z56_C DNA ligase IV; DNA repa 30.3 19 0.00066 25.6 1.4 22 71-92 241-262 (264)
16 1t15_A Breast cancer type 1 su 27.9 23 0.00078 23.9 1.3 20 71-90 190-209 (214)
17 2ep8_A Pescadillo homolog 1; A 27.4 25 0.00086 22.4 1.4 19 71-89 81-99 (100)
18 2k21_A Potassium voltage-gated 25.4 54 0.0019 22.9 2.9 28 43-70 57-84 (138)
19 1l0b_A BRCA1; TANDEM-BRCT, thr 23.9 30 0.001 23.8 1.3 24 67-90 188-211 (229)
20 3pc7_A DNA ligase 3; DNA repai 22.5 28 0.00094 22.2 0.9 12 71-82 72-83 (88)
21 3m62_A Ubiquitin conjugation f 21.9 3.3E+02 0.011 24.3 7.7 35 50-85 268-304 (968)
22 2vxb_A DNA repair protein RHP9 21.5 33 0.0011 24.7 1.2 21 70-90 95-115 (241)
No 1
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=99.46 E-value=1.7e-14 Score=108.05 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=59.1
Q ss_pred chHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHhhhhhhhhhHhhhhcc-ccccc
Q psy12609 15 EYSALFEGAGNDPGDKTLEDKFFEHEVRLNVYAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKH-RTKID 87 (93)
Q Consensus 15 ~Y~~lfd~~~~~~g~ksLED~F~~~Ev~l~~~aF~qQF~~gvfYa~~KLKEQEiRNi~WIaECIaQ~q-k~ri~ 87 (93)
.|+.+++.. +..++|+.+....+++++.++.+||++|+++||+++||||+|||.||+||++++- ++.|.
T Consensus 248 ~Y~~~~~~~----~~~~~E~~~~~~~~~~~~~~~~~~f~~~~~~ayl~~kE~Ei~nl~~I~~~~~~~l~~e~i~ 317 (323)
T 1v9m_A 248 PFSGLSGVR----DLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVE 317 (323)
T ss_dssp TTGGGTTCC----SHHHHHHHHHHHHHHHHGGGGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHhccC----CHHHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 476666653 2358999999999999999999999999999999999999999999999999984 34443
No 2
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=57.83 E-value=4.3 Score=24.77 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=17.7
Q ss_pred hhhhhhhhHhhhhcccccccCcc
Q psy12609 68 CRNIVWISECVAQKHRTKIDNYI 90 (93)
Q Consensus 68 iRNi~WIaECIaQ~qk~ri~~yI 90 (93)
|=+..||-+||.++.+--.+.|.
T Consensus 72 iV~p~Wl~dci~~~~~l~~~~Y~ 94 (97)
T 2ebw_A 72 VIRPEWIVESIKAGRLLSYIPYQ 94 (97)
T ss_dssp CBCTHHHHHHHHHTSCCCSGGGB
T ss_pred EeChHHHHHHHHcCCccCchHcE
Confidence 33478999999999876666664
No 3
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=50.82 E-value=6.9 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=19.9
Q ss_pred hhhhhhhhHhhhhcccccccCcccC
Q psy12609 68 CRNIVWISECVAQKHRTKIDNYIPI 92 (93)
Q Consensus 68 iRNi~WIaECIaQ~qk~ri~~yI~i 92 (93)
+=+..||-+||.++.+=.-+.|.|.
T Consensus 103 iV~~~Wv~dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 103 VVGAKWLLECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp EEEHHHHHHHHHHSSCCCSGGGBCC
T ss_pred EechHHHHHHHHcCCcCCHhhccCC
Confidence 3457899999999988777778664
No 4
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=50.33 E-value=7.7 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=19.6
Q ss_pred hhhhhhhhHhhhhcccccccCcccC
Q psy12609 68 CRNIVWISECVAQKHRTKIDNYIPI 92 (93)
Q Consensus 68 iRNi~WIaECIaQ~qk~ri~~yI~i 92 (93)
|=+.-|+-+|+.++.+---++|.+.
T Consensus 79 IV~~~Wl~~c~~~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 79 IVSEHWLLDCAQECKHLPESLYPHT 103 (107)
T ss_dssp EECHHHHHHHHHHTSCCCGGGCCTT
T ss_pred EecHHHHHHHHHhCCCCchhhCCCC
Confidence 3457799999999988777777654
No 5
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=50.23 E-value=6 Score=23.51 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=17.1
Q ss_pred hhhhhhhHhhhhcccccccCcc
Q psy12609 69 RNIVWISECVAQKHRTKIDNYI 90 (93)
Q Consensus 69 RNi~WIaECIaQ~qk~ri~~yI 90 (93)
=+-.||-+|+.++.+=-.++|.
T Consensus 69 V~~~Wi~dci~~~~~l~e~~Y~ 90 (92)
T 4id3_A 69 VSPDWIVDSVKEARLLPWQNYS 90 (92)
T ss_dssp ECTHHHHHHHHHTSCCCGGGGB
T ss_pred EcccHHHHHHHcCCcCChhhcc
Confidence 3467999999999876666664
No 6
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=48.09 E-value=7.6 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.2
Q ss_pred hhhhhHhhhhcccccccCccc
Q psy12609 71 IVWISECVAQKHRTKIDNYIP 91 (93)
Q Consensus 71 i~WIaECIaQ~qk~ri~~yI~ 91 (93)
-.||-+||.++..--.+.|..
T Consensus 74 P~WI~~Ci~~~klvp~~~y~~ 94 (104)
T 3pc6_A 74 PRWIYSCNEKQKLLPHQLYGV 94 (104)
T ss_dssp HHHHHHHHHHTSCCCGGGGBC
T ss_pred cHHHHHHHhcCccCCccccee
Confidence 469999999998887777753
No 7
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=43.32 E-value=9.2 Score=24.57 Aligned_cols=23 Identities=13% Similarity=0.557 Sum_probs=16.9
Q ss_pred hhhhhhhhhHhhhhcccccccCc
Q psy12609 67 ECRNIVWISECVAQKHRTKIDNY 89 (93)
Q Consensus 67 EiRNi~WIaECIaQ~qk~ri~~y 89 (93)
.+=|.-|+.|||.++..=-.+.|
T Consensus 79 ~iV~~~Wv~dci~~~~llde~~y 101 (106)
T 2jw5_A 79 QLVKSAWLSLCLQERRLVDVAGF 101 (106)
T ss_dssp EEEEHHHHHHHHHTCSCCCGGGT
T ss_pred EEecCchHHHHHhcCcccCcccc
Confidence 45589999999998876444444
No 8
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=42.84 E-value=9.5 Score=26.48 Aligned_cols=20 Identities=15% Similarity=0.459 Sum_probs=16.4
Q ss_pred hhhhhhhhhHhhhhcccccc
Q psy12609 67 ECRNIVWISECVAQKHRTKI 86 (93)
Q Consensus 67 EiRNi~WIaECIaQ~qk~ri 86 (93)
++=+|.|++||+..++.-.+
T Consensus 82 ~lLdisWltecm~~g~pV~~ 101 (133)
T 2dun_A 82 ALLDISWLTESLGAGQPVPV 101 (133)
T ss_dssp EEEEHHHHHHHHHHTSCCCC
T ss_pred EEeccHHHHHHHhcCCcCCc
Confidence 45689999999999887555
No 9
>1v9m_A V-type ATP synthase subunit C; VOV1-ATPase, V-type ATPase, the C subunit, thermus thermophi riken structural genomics/proteomics initiative; 1.85A {Thermus thermophilus} SCOP: f.40.1.1 PDB: 1r5z_A 3j0j_M*
Probab=38.07 E-value=35 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHHHhHHhhhhhhhhhHhhhhcccccccCcc
Q psy12609 55 GVFYSYLKLKEQECRNIVWISECVAQKHRTKIDNYI 90 (93)
Q Consensus 55 gvfYa~~KLKEQEiRNi~WIaECIaQ~qk~ri~~yI 90 (93)
.++..|+. .|-+++||.|+-.|..++. + +.+++
T Consensus 186 ~~l~~~~~-~~iD~~Ni~~~lr~~~~~~-~-i~~~l 218 (323)
T 1v9m_A 186 PALRDYLA-LEVDAENLRTAFKLQGSGL-A-PDAFF 218 (323)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHTTTSCC-C-GGGTC
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHcCC-C-HHHhc
Confidence 67777765 6789999999999999886 4 65444
No 10
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=36.46 E-value=13 Score=25.90 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.0
Q ss_pred hhhhhHhhhhcccccccCccc
Q psy12609 71 IVWISECVAQKHRTKIDNYIP 91 (93)
Q Consensus 71 i~WIaECIaQ~qk~ri~~yI~ 91 (93)
-.||-+||.++..--.++|.+
T Consensus 177 p~Wi~DsI~~~~llp~~~Y~~ 197 (199)
T 3u3z_A 177 EKWVLDSITQHKVCAPENYLL 197 (199)
T ss_dssp HHHHHHHHHHTSCCCGGGGBC
T ss_pred hhHHHHHHHcCCcCChHhccC
Confidence 469999999999888888875
No 11
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=36.27 E-value=16 Score=23.57 Aligned_cols=23 Identities=9% Similarity=0.390 Sum_probs=17.8
Q ss_pred hhhhhhhhHhhhhcccccccCcc
Q psy12609 68 CRNIVWISECVAQKHRTKIDNYI 90 (93)
Q Consensus 68 iRNi~WIaECIaQ~qk~ri~~yI 90 (93)
|=+..|+-+|+.++.+---..|.
T Consensus 72 iV~~~Wv~~C~~~~~~vdE~~Y~ 94 (107)
T 3pa6_A 72 LVSVLWVEKCRTAGAHIDESLFP 94 (107)
T ss_dssp EECHHHHHHHHHHTSCCCGGGSB
T ss_pred EECHHHHHHHHHhCccCChhccc
Confidence 44688999999999876656664
No 12
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.42 E-value=17 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.635 Sum_probs=16.2
Q ss_pred HhhhhhhhhhHhhhhcccccc
Q psy12609 66 QECRNIVWISECVAQKHRTKI 86 (93)
Q Consensus 66 QEiRNi~WIaECIaQ~qk~ri 86 (93)
..+=++.|+.||+..++.--.
T Consensus 88 ~~lv~i~Wl~esmk~g~lv~e 108 (120)
T 2coe_A 88 PELLDVSWLIECIGAGKPVEM 108 (120)
T ss_dssp CEEEEHHHHHHHHHTTSCCCC
T ss_pred cEEeecHHHHHHHHcCCccCc
Confidence 366789999999988876444
No 13
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.49 E-value=22 Score=22.49 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=18.4
Q ss_pred hhhhhhhhHhhhhcccccccCccc
Q psy12609 68 CRNIVWISECVAQKHRTKIDNYIP 91 (93)
Q Consensus 68 iRNi~WIaECIaQ~qk~ri~~yI~ 91 (93)
|=+.-|+-+||.++.+-.-+.|.+
T Consensus 73 IV~~~Wl~dsi~~g~~ldE~~Y~~ 96 (109)
T 2cou_A 73 VVKQEWFWGSIQMDARAGETMYLY 96 (109)
T ss_dssp EECHHHHHHHHHTTSCCCGGGTBC
T ss_pred EecHHHHHHHHHcCCcCChhccCC
Confidence 445789999999998766666643
No 14
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.48 E-value=20 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=18.9
Q ss_pred hhhhhhhhhHhhhhcccccccCccc
Q psy12609 67 ECRNIVWISECVAQKHRTKIDNYIP 91 (93)
Q Consensus 67 EiRNi~WIaECIaQ~qk~ri~~yI~ 91 (93)
-|=+.-||-+|+.++.+-..+.|..
T Consensus 82 ~IV~~~Wl~d~~~~~~~l~e~~Y~l 106 (129)
T 2d8m_A 82 RIVRKEWVLDCHRMRRRLPSQRYLM 106 (129)
T ss_dssp EEEETHHHHHHHHTTSCCCGGGGBC
T ss_pred cEecHHHHHHHHHhCCcCChHhccc
Confidence 3445789999999988776677653
No 15
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=30.34 E-value=19 Score=25.60 Aligned_cols=22 Identities=5% Similarity=0.376 Sum_probs=15.7
Q ss_pred hhhhhHhhhhcccccccCcccC
Q psy12609 71 IVWISECVAQKHRTKIDNYIPI 92 (93)
Q Consensus 71 i~WIaECIaQ~qk~ri~~yI~i 92 (93)
-.||-+||.++.+=--+.|.|+
T Consensus 241 ~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 241 PEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp THHHHHHHTTSCCCSSCCC---
T ss_pred HHHHHHHHHcCCcCCHHHcCCC
Confidence 3599999999987776777654
No 16
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=27.92 E-value=23 Score=23.92 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=17.0
Q ss_pred hhhhhHhhhhcccccccCcc
Q psy12609 71 IVWISECVAQKHRTKIDNYI 90 (93)
Q Consensus 71 i~WIaECIaQ~qk~ri~~yI 90 (93)
..||-+||.++..--.++|.
T Consensus 190 ~~Wi~dsi~~~~~l~~~~Y~ 209 (214)
T 1t15_A 190 REWVLDSVALYQCQELDTYL 209 (214)
T ss_dssp HHHHHHHHHHTSCCCSGGGB
T ss_pred ccHHHHhHhhcCcCCCccee
Confidence 68999999999887777774
No 17
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.42 E-value=25 Score=22.41 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=14.5
Q ss_pred hhhhhHhhhhcccccccCc
Q psy12609 71 IVWISECVAQKHRTKIDNY 89 (93)
Q Consensus 71 i~WIaECIaQ~qk~ri~~y 89 (93)
-.||-+||.++..=..+.|
T Consensus 81 PqWV~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 81 PQWVFDSVNARLLLPVAEY 99 (100)
T ss_dssp THHHHHHHHHTSCCCTTTC
T ss_pred chHHHHHHhcCCcCChhhc
Confidence 4699999998876555555
No 18
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=25.39 E-value=54 Score=22.95 Aligned_cols=28 Identities=36% Similarity=0.634 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhHHhhhh
Q psy12609 43 LNVYAFLQQFHFGVFYSYLKLKEQECRN 70 (93)
Q Consensus 43 l~~~aF~qQF~~gvfYa~~KLKEQEiRN 70 (93)
|-...|-.-|..|+.-+|+|.|-.|-++
T Consensus 57 L~vmgffgff~~GImLsYiRSKk~E~s~ 84 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYIRSKKLEHSN 84 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhccccC
Confidence 5568899999999999999999999887
No 19
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=23.87 E-value=30 Score=23.80 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=19.2
Q ss_pred hhhhhhhhhHhhhhcccccccCcc
Q psy12609 67 ECRNIVWISECVAQKHRTKIDNYI 90 (93)
Q Consensus 67 EiRNi~WIaECIaQ~qk~ri~~yI 90 (93)
.|=...||-+||.+++.-..++|.
T Consensus 188 ~iVs~~WlldsI~~~~~~~~~~Y~ 211 (229)
T 1l0b_A 188 RLVMWDWVLDSISVYRCRDLDAYL 211 (229)
T ss_dssp CEEETHHHHHHHHTTSCCCGGGGB
T ss_pred eEeehhHHHHHHhcCCcCCccceE
Confidence 455588999999999877777775
No 20
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=22.51 E-value=28 Score=22.18 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=9.6
Q ss_pred hhhhhHhhhhcc
Q psy12609 71 IVWISECVAQKH 82 (93)
Q Consensus 71 i~WIaECIaQ~q 82 (93)
-.||-+||.++.
T Consensus 72 p~WI~dcI~k~~ 83 (88)
T 3pc7_A 72 PEWIWACIRKRR 83 (88)
T ss_dssp HHHHHHHHHHTS
T ss_pred hHHHHHHHhCCc
Confidence 469999998764
No 21
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=21.90 E-value=3.3e+02 Score=24.33 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=25.6
Q ss_pred HhhhhHHHHHHHHHhHHhhhh--hhhhhHhhhhccccc
Q psy12609 50 QQFHFGVFYSYLKLKEQECRN--IVWISECVAQKHRTK 85 (93)
Q Consensus 50 qQF~~gvfYa~~KLKEQEiRN--i~WIaECIaQ~qk~r 85 (93)
+.--|.++.+.+|. ..|.|+ +.|+|.||..|++.|
T Consensus 268 ~~~L~~I~~~llr~-s~etR~~~L~w~a~~ln~N~~R~ 304 (968)
T 3m62_A 268 IDRLFFIVDKLVRG-SLNSRTDMISYFAHIANKNHLRR 304 (968)
T ss_dssp HHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTCGGGG
T ss_pred HHHHHHHHHHHHhC-CcchHHHHHHHHHHHHHhCcHHH
Confidence 34456888887662 345555 999999999998744
No 22
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=21.54 E-value=33 Score=24.67 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=15.4
Q ss_pred hhhhhhHhhhhcccccccCcc
Q psy12609 70 NIVWISECVAQKHRTKIDNYI 90 (93)
Q Consensus 70 Ni~WIaECIaQ~qk~ri~~yI 90 (93)
+-.||-+|+.++..--.++|+
T Consensus 95 ~~~Wi~dc~~~~~~~~~~~yl 115 (241)
T 2vxb_A 95 HPQFIKQCLKMNRVVDFSPYL 115 (241)
T ss_dssp CTHHHHHHHHHTSCCCSGGGB
T ss_pred cHHHHHHHHHcCCcCChhhcc
Confidence 357999999998765555554
Done!