RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12609
         (93 letters)



>gnl|CDD|216834 pfam01992, vATP-synt_AC39, ATP synthase (C/AC39) subunit.  This
           family includes the AC39 subunit from vacuolar ATP
           synthase, and the C subunit from archaebacterial ATP
           synthase. The family also includes subunit C from the
           Sodium transporting ATP synthase from Enterococcus
           hirae.
          Length = 335

 Score = 83.9 bits (208), Expect = 6e-21
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 14  QEYSALFEGAGNDPGD-KTLEDKFFEHEV-RLNVYAFLQQFHFGVFYSYLKLKEQECRNI 71
               AL E AG   G  K LE    +  + R++  AF+     G   SY+KLKEQE RN+
Sbjct: 255 AYGEALSEAAGEYGGSLKALERALDKVLLERISKLAFVYPLSVGPVLSYIKLKEQEVRNL 314

Query: 72  VWISECVAQKHRT-KIDNYIP 91
             I+    Q  +   I+  I 
Sbjct: 315 RAIARGKEQGLKPEAIEEEIV 335


>gnl|CDD|224444 COG1527, NtpC, Archaeal/vacuolar-type H+-ATPase subunit C [Energy
           production and conversion].
          Length = 346

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 15  EYSALFEGAGNDPGDKTLEDKFFEHEVRLNVYAFLQQFHFGVF--YSYLKLKEQECRNIV 72
           EY   +E  G+      + ++     +      F Q +   V    +YL  KE E +N+ 
Sbjct: 269 EYREEYEEGGS----IAVFEEALRKALLKRAKEFAQYYPLSVGPVLAYLLRKEIEVKNLR 324

Query: 73  WISECVAQK-HRTKIDNYIPI 92
           WI+E  A    R +I   +  
Sbjct: 325 WIAEGKANGLPREEIKELLVP 345


>gnl|CDD|185242 PRK15344, PRK15344, type III secretion system needle protein
          SsaG; Provisional.
          Length = 71

 Score = 24.9 bits (54), Expect = 3.1
 Identities = 11/48 (22%), Positives = 17/48 (35%)

Query: 17 SALFEGAGNDPGDKTLEDKFFEHEVRLNVYAFLQQFHFGVFYSYLKLK 64
          S +   AG    DK   +     E  +     LQQ+   + Y    +K
Sbjct: 11 SHMAHQAGQAINDKMNGNDLLNPESMIKAQFALQQYSTFINYESSLIK 58


>gnl|CDD|166397 PLN02756, PLN02756, S-methyl-5-thioribose kinase.
          Length = 418

 Score = 26.0 bits (57), Expect = 3.5
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 1   MLNTIEIPFNIFPQEYSALFEGAGNDPGDKTLEDKFFEHEVRLNV 45
           +L TIE  +N+F ++++AL++   +  G+  L + +   E+   V
Sbjct: 297 ILKTIEQTWNLFHKKFTALWDEHKDGSGEAYLPEIYNNPELLQLV 341


>gnl|CDD|226699 COG4248, COG4248, Uncharacterized protein with protein kinase and
           helix-hairpin-helix DNA-binding domains [General
           function prediction only].
          Length = 637

 Score = 25.7 bits (56), Expect = 4.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 5   IEIPFNIFPQEYSALFEGAGNDPGDKTL 32
             IP ++ P +  ALF+ A  + G  T 
Sbjct: 259 RSIPLSMLPPDVQALFQQAFTESGVATP 286


>gnl|CDD|153305 cd07621, BAR_SNX5_6, The Bin/Amphiphysin/Rvs (BAR) domain of
          Sorting Nexins 5 and 6.  BAR domains are dimerization,
          lipid binding and curvature sensing modules found in
          many different proteins with diverse functions. Sorting
          nexins (SNXs) are Phox homology (PX) domain containing
          proteins that are involved in regulating membrane
          traffic and protein sorting in the endosomal system.
          SNXs differ from each other in their lipid-binding
          specificity, subcellular localization and specific
          function in the endocytic pathway. A subset of SNXs
          also contain BAR domains. The PX-BAR structural unit
          determines the specific membrane targeting of SNXs.
          Members of this subfamily include SNX5, SNX6, the
          mammalian SNX32, and similar proteins. SNX5 and SNX6
          may be components of the retromer complex, a membrane
          coat multimeric complex required for endosomal
          retrieval of lysosomal hydrolase receptors to the
          Golgi, acting as a mammalian equivalent of yeast
          Vsp17p. The function of SNX32 is still unknown. BAR
          domains form dimers that bind to membranes, induce
          membrane bending and curvature, and may also be
          involved in protein-protein interactions.
          Length = 219

 Score = 25.4 bits (56), Expect = 4.6
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 17/59 (28%)

Query: 34 DKFFEHEVRLNVYAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRTKIDNYIPI 92
          D+FFE E       FL ++H        ++K+   +     ++ + +KH+   D+YI I
Sbjct: 23 DEFFEQEKN-----FLVEYH-------NRIKDATAK-----ADKMTRKHKDVADSYIKI 64


>gnl|CDD|218955 pfam06247, Plasmod_Pvs28, Plasmodium ookinete surface protein
           Pvs28.  This family consists of several ookinete surface
           protein (Pvs28) from several species of Plasmodium.
           Pvs25 and Pvs28 are expressed on the surface of
           ookinetes. These proteins are potential candidates for
           vaccine and induce antibodies that block the infectivity
           of Plasmodium vivax in immunised animals.
          Length = 196

 Score = 25.1 bits (55), Expect = 5.2
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 61  LKLKEQE-CRNIVWISECVAQ 80
           LK KE E C+ +    ECV +
Sbjct: 136 LKCKENEECKLVGGYYECVCK 156


>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease.  This family is a
           bifunctional nuclease, with both DNase and RNase
           activity. It forms a wedge-shaped dimer, with each
           monomer being triangular in shape. A large groove at the
           thick end of the wedge contains a possible active site.
          Length = 132

 Score = 24.8 bits (55), Expect = 5.7
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 13/44 (29%)

Query: 55  GVFYSYLKLKEQE-----CRNIVWISECVAQKHRTKIDNYIPIF 93
           G FY+ L L++        R     S+ +A   RT      PI+
Sbjct: 80  GTFYARLVLRDGGEEEIDAR----PSDAIALALRTG----APIY 115


>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase;
          Provisional.
          Length = 342

 Score = 25.2 bits (56), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 28 GDKTLEDKFFEHEVRLN 44
          GD    D+FF  E RLN
Sbjct: 77 GDPLAADRFFREEYRLN 93


>gnl|CDD|149865 pfam08930, DUF1912, Domain of unknown function (DUF1912).  This
          domain has no known function. It is found in various
          Streptococcal proteins.
          Length = 84

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 28 GDKTLEDKFFEHEVRLNVYAFLQ 50
          GD+  +D +  +E +L+ Y FLQ
Sbjct: 37 GDERAKDAYIRYESKLDAYEFLQ 59


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.143    0.446 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,829,937
Number of extensions: 392724
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 13
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)